Bindings for protocols::protein_interface_design::filters namespace

Classes
		rosetta.protocols.filters.Filter(builtins.object) AtomicContactCountFilter AverageDegreeFilter BindingStrainFilter BoltzmannFilter ClashWithTargetFilter DesignableResiduesFilter DisulfideFilter FNatFilter FilterScanFilter HbondsToAtomFilter HbondsToResidueFilter IRmsdFilter InterfaceHolesFilter LRmsdFilter RelativeSegmentFilter RmsdFilter RmsdSimpleFilter SSamountFilter SequenceRecoveryFilter SpecificResiduesNearInterfaceFilter StubScoreFilter Torsion rosetta.protocols.filters.FilterCreator(builtins.object) AtomicContactCountFilterCreator AverageDegreeFilterCreator BindingStrainFilterCreator BoltzmannFilterCreator ClashWithTargetFilterCreator DesignableResiduesFilterCreator DisulfideFilterCreator FNatFilterCreator FilterScanFilterCreator HbondsToAtomFilterCreator HbondsToResidueFilterCreator IRmsdFilterCreator InterfaceHolesFilterCreator LRmsdFilterCreator RelativeSegmentFilterCreator RmsdFilterCreator RmsdSimpleFilterCreator SSamountFilterCreator SequenceRecoveryFilterCreator SpecificResiduesNearInterfaceFilterCreator StubScoreFilterCreator StubScoreLoopsFilterCreator TorsionCreator rosetta.protocols.simple_filters.ConstraintScoreCutoffFilter(rosetta.protocols.filters.Filter) StubScoreLoopsFilter   class AtomicContactCountFilter(rosetta.protocols.filters.Filter)       Method resolution order: AtomicContactCountFilter rosetta.protocols.filters.Filter builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, distance_cutoff : float) -> NoneType   3. __init__(handle, rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilter) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilter,  : rosetta.core.pose.Pose) -> bool   Returns true if the given pose passes the filter, false otherwise. clone(...) from builtins.PyCapsule clone(rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilter) -> rosetta.protocols.filters.Filter compute(...) from builtins.PyCapsule compute(self : rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilter,  : rosetta.core.pose.Pose) -> float fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilter) -> rosetta.protocols.filters.Filter initialize_all_atoms(...) from builtins.PyCapsule initialize_all_atoms(*args, **kwargs) Overloaded function.   1. initialize_all_atoms(rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilter) -> NoneType   2. initialize_all_atoms(self : rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilter, task_factoryA : rosetta.core.pack.task.TaskFactory) -> NoneType   3. initialize_all_atoms(self : rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilter, task_factoryA : rosetta.core.pack.task.TaskFactory, individual_tasks : bool) -> NoneType   4. initialize_all_atoms(self : rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilter, task_factoryA : rosetta.core.pack.task.TaskFactory, individual_tasks : bool, task_factoryB : rosetta.core.pack.task.TaskFactory) -> NoneType   5. initialize_all_atoms(self : rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilter, task_factoryA : rosetta.core.pack.task.TaskFactory, individual_tasks : bool, task_factoryB : rosetta.core.pack.task.TaskFactory, normalize_by_carbon_count : bool) -> NoneType initialize_cross_chain(...) from builtins.PyCapsule initialize_cross_chain(*args, **kwargs) Overloaded function.   1. initialize_cross_chain(rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilter) -> NoneType   2. initialize_cross_chain(self : rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilter, task_factoryA : rosetta.core.pack.task.TaskFactory) -> NoneType   3. initialize_cross_chain(self : rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilter, task_factoryA : rosetta.core.pack.task.TaskFactory, normalize_by_sasa : bool) -> NoneType   4. initialize_cross_chain(self : rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilter, task_factoryA : rosetta.core.pack.task.TaskFactory, normalize_by_sasa : bool, detect_chains_for_interface_by_task : bool) -> NoneType   5. initialize_cross_chain(self : rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilter, task_factoryA : rosetta.core.pack.task.TaskFactory, normalize_by_sasa : bool, detect_chains_for_interface_by_task : bool, individual_tasks : bool) -> NoneType   6. initialize_cross_chain(self : rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilter, task_factoryA : rosetta.core.pack.task.TaskFactory, normalize_by_sasa : bool, detect_chains_for_interface_by_task : bool, individual_tasks : bool, task_factoryB : rosetta.core.pack.task.TaskFactory) -> NoneType   7. initialize_cross_chain(self : rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilter, task_factoryA : rosetta.core.pack.task.TaskFactory, normalize_by_sasa : bool, detect_chains_for_interface_by_task : bool, individual_tasks : bool, task_factoryB : rosetta.core.pack.task.TaskFactory, normalize_by_carbon_count : bool) -> NoneType initialize_cross_jump(...) from builtins.PyCapsule initialize_cross_jump(*args, **kwargs) Overloaded function.   1. initialize_cross_jump(rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilter) -> NoneType   2. initialize_cross_jump(self : rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilter, jump : int) -> NoneType   3. initialize_cross_jump(self : rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilter, jump : int, sym_dof_name : str) -> NoneType   4. initialize_cross_jump(self : rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilter, jump : int, sym_dof_name : str, task_factoryA : rosetta.core.pack.task.TaskFactory) -> NoneType   5. initialize_cross_jump(self : rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilter, jump : int, sym_dof_name : str, task_factoryA : rosetta.core.pack.task.TaskFactory, normalize_by_sasa : bool) -> NoneType   6. initialize_cross_jump(self : rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilter, jump : int, sym_dof_name : str, task_factoryA : rosetta.core.pack.task.TaskFactory, normalize_by_sasa : bool, individual_tasks : bool) -> NoneType   7. initialize_cross_jump(self : rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilter, jump : int, sym_dof_name : str, task_factoryA : rosetta.core.pack.task.TaskFactory, normalize_by_sasa : bool, individual_tasks : bool, task_factoryB : rosetta.core.pack.task.TaskFactory) -> NoneType   8. initialize_cross_jump(self : rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilter, jump : int, sym_dof_name : str, task_factoryA : rosetta.core.pack.task.TaskFactory, normalize_by_sasa : bool, individual_tasks : bool, task_factoryB : rosetta.core.pack.task.TaskFactory, normalize_by_carbon_count : bool) -> NoneType name(...) from builtins.PyCapsule name(rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilter) -> str report_sm(...) from builtins.PyCapsule report_sm(self : rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilter, pose : rosetta.core.pose.Pose) -> float Methods inherited from rosetta.protocols.filters.Filter: clear(...) from builtins.PyCapsule clear(rosetta.protocols.filters.Filter) -> NoneType   used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.filters.Filter) -> str get_user_defined_name(...) from builtins.PyCapsule get_user_defined_name(rosetta.protocols.filters.Filter) -> str score(...) from builtins.PyCapsule score(self : rosetta.protocols.filters.Filter, pose : rosetta.core.pose.Pose) -> float set_user_defined_name(...) from builtins.PyCapsule set_user_defined_name(self : rosetta.protocols.filters.Filter, name : str) -> NoneType   class AtomicContactCountFilterCreator(rosetta.protocols.filters.FilterCreator)       Method resolution order: AtomicContactCountFilterCreator rosetta.protocols.filters.FilterCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilterCreator,  : rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilterCreator) -> rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilterCreator create_filter(...) from builtins.PyCapsule create_filter(rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilterCreator) -> rosetta.protocols.filters.Filter keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.protein_interface_design.filters.AtomicContactCountFilterCreator) -> str   class AverageDegreeFilter(rosetta.protocols.filters.Filter)       Method resolution order: AverageDegreeFilter rosetta.protocols.filters.Filter builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.protein_interface_design.filters.AverageDegreeFilter) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.protein_interface_design.filters.AverageDegreeFilter, pose : rosetta.core.pose.Pose) -> bool   Constructor with a single target residue clone(...) from builtins.PyCapsule clone(rosetta.protocols.protein_interface_design.filters.AverageDegreeFilter) -> rosetta.protocols.filters.Filter compute(...) from builtins.PyCapsule compute(self : rosetta.protocols.protein_interface_design.filters.AverageDegreeFilter, pose : rosetta.core.pose.Pose) -> float distance_threshold(...) from builtins.PyCapsule distance_threshold(*args, **kwargs) Overloaded function.   1. distance_threshold(rosetta.protocols.protein_interface_design.filters.AverageDegreeFilter) -> float   2. distance_threshold(self : rosetta.protocols.protein_interface_design.filters.AverageDegreeFilter, d : float) -> NoneType fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.protein_interface_design.filters.AverageDegreeFilter) -> rosetta.protocols.filters.Filter report_sm(...) from builtins.PyCapsule report_sm(self : rosetta.protocols.protein_interface_design.filters.AverageDegreeFilter, pose : rosetta.core.pose.Pose) -> float task_factory(...) from builtins.PyCapsule task_factory(*args, **kwargs) Overloaded function.   1. task_factory(rosetta.protocols.protein_interface_design.filters.AverageDegreeFilter) -> rosetta.core.pack.task.TaskFactory   2. task_factory(self : rosetta.protocols.protein_interface_design.filters.AverageDegreeFilter, task_factory : rosetta.core.pack.task.TaskFactory) -> NoneType threshold(...) from builtins.PyCapsule threshold(*args, **kwargs) Overloaded function.   1. threshold(rosetta.protocols.protein_interface_design.filters.AverageDegreeFilter) -> float   2. threshold(self : rosetta.protocols.protein_interface_design.filters.AverageDegreeFilter, threshold : float) -> NoneType Methods inherited from rosetta.protocols.filters.Filter: clear(...) from builtins.PyCapsule clear(rosetta.protocols.filters.Filter) -> NoneType   used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.filters.Filter) -> str get_user_defined_name(...) from builtins.PyCapsule get_user_defined_name(rosetta.protocols.filters.Filter) -> str name(...) from builtins.PyCapsule name(rosetta.protocols.filters.Filter) -> str score(...) from builtins.PyCapsule score(self : rosetta.protocols.filters.Filter, pose : rosetta.core.pose.Pose) -> float set_user_defined_name(...) from builtins.PyCapsule set_user_defined_name(self : rosetta.protocols.filters.Filter, name : str) -> NoneType   class AverageDegreeFilterCreator(rosetta.protocols.filters.FilterCreator)       Method resolution order: AverageDegreeFilterCreator rosetta.protocols.filters.FilterCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.protein_interface_design.filters.AverageDegreeFilterCreator,  : rosetta.protocols.protein_interface_design.filters.AverageDegreeFilterCreator) -> rosetta.protocols.protein_interface_design.filters.AverageDegreeFilterCreator create_filter(...) from builtins.PyCapsule create_filter(rosetta.protocols.protein_interface_design.filters.AverageDegreeFilterCreator) -> rosetta.protocols.filters.Filter keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.protein_interface_design.filters.AverageDegreeFilterCreator) -> str   class BindingStrainFilter(rosetta.protocols.filters.Filter)       Method resolution order: BindingStrainFilter rosetta.protocols.filters.Filter builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.protein_interface_design.filters.BindingStrainFilter) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.protein_interface_design.filters.BindingStrainFilter, pose : rosetta.core.pose.Pose) -> bool   Constructor with a single target residue clone(...) from builtins.PyCapsule clone(rosetta.protocols.protein_interface_design.filters.BindingStrainFilter) -> rosetta.protocols.filters.Filter compute(...) from builtins.PyCapsule compute(self : rosetta.protocols.protein_interface_design.filters.BindingStrainFilter, pose : rosetta.core.pose.Pose) -> float fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.protein_interface_design.filters.BindingStrainFilter) -> rosetta.protocols.filters.Filter jump(...) from builtins.PyCapsule jump(*args, **kwargs) Overloaded function.   1. jump(rosetta.protocols.protein_interface_design.filters.BindingStrainFilter) -> int   2. jump(self : rosetta.protocols.protein_interface_design.filters.BindingStrainFilter, j : int) -> NoneType relax_mover(...) from builtins.PyCapsule relax_mover(*args, **kwargs) Overloaded function.   1. relax_mover(rosetta.protocols.protein_interface_design.filters.BindingStrainFilter) -> rosetta.protocols.moves.Mover   2. relax_mover(self : rosetta.protocols.protein_interface_design.filters.BindingStrainFilter, mover : rosetta.protocols.moves.Mover) -> NoneType report_sm(...) from builtins.PyCapsule report_sm(self : rosetta.protocols.protein_interface_design.filters.BindingStrainFilter, pose : rosetta.core.pose.Pose) -> float scorefxn(...) from builtins.PyCapsule scorefxn(*args, **kwargs) Overloaded function.   1. scorefxn(rosetta.protocols.protein_interface_design.filters.BindingStrainFilter) -> rosetta.core.scoring.ScoreFunction   2. scorefxn(self : rosetta.protocols.protein_interface_design.filters.BindingStrainFilter, scorefxn : rosetta.core.scoring.ScoreFunction) -> NoneType task_factory(...) from builtins.PyCapsule task_factory(*args, **kwargs) Overloaded function.   1. task_factory(rosetta.protocols.protein_interface_design.filters.BindingStrainFilter) -> rosetta.core.pack.task.TaskFactory   2. task_factory(self : rosetta.protocols.protein_interface_design.filters.BindingStrainFilter, task : rosetta.core.pack.task.TaskFactory) -> NoneType threshold(...) from builtins.PyCapsule threshold(*args, **kwargs) Overloaded function.   1. threshold(rosetta.protocols.protein_interface_design.filters.BindingStrainFilter) -> float   2. threshold(self : rosetta.protocols.protein_interface_design.filters.BindingStrainFilter, t : float) -> NoneType Methods inherited from rosetta.protocols.filters.Filter: clear(...) from builtins.PyCapsule clear(rosetta.protocols.filters.Filter) -> NoneType   used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.filters.Filter) -> str get_user_defined_name(...) from builtins.PyCapsule get_user_defined_name(rosetta.protocols.filters.Filter) -> str name(...) from builtins.PyCapsule name(rosetta.protocols.filters.Filter) -> str score(...) from builtins.PyCapsule score(self : rosetta.protocols.filters.Filter, pose : rosetta.core.pose.Pose) -> float set_user_defined_name(...) from builtins.PyCapsule set_user_defined_name(self : rosetta.protocols.filters.Filter, name : str) -> NoneType   class BindingStrainFilterCreator(rosetta.protocols.filters.FilterCreator)       Method resolution order: BindingStrainFilterCreator rosetta.protocols.filters.FilterCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.protein_interface_design.filters.BindingStrainFilterCreator,  : rosetta.protocols.protein_interface_design.filters.BindingStrainFilterCreator) -> rosetta.protocols.protein_interface_design.filters.BindingStrainFilterCreator create_filter(...) from builtins.PyCapsule create_filter(rosetta.protocols.protein_interface_design.filters.BindingStrainFilterCreator) -> rosetta.protocols.filters.Filter keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.protein_interface_design.filters.BindingStrainFilterCreator) -> str   class BoltzmannFilter(rosetta.protocols.filters.Filter)       Method resolution order: BoltzmannFilter rosetta.protocols.filters.Filter builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.protein_interface_design.filters.BoltzmannFilter) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. add_negative_filter(...) from builtins.PyCapsule add_negative_filter(self : rosetta.protocols.protein_interface_design.filters.BoltzmannFilter, f : rosetta.protocols.filters.Filter) -> NoneType add_positive_filter(...) from builtins.PyCapsule add_positive_filter(self : rosetta.protocols.protein_interface_design.filters.BoltzmannFilter, f : rosetta.protocols.filters.Filter) -> NoneType anchors(...) from builtins.PyCapsule anchors(*args, **kwargs) Overloaded function.   1. anchors(self : rosetta.protocols.protein_interface_design.filters.BoltzmannFilter, anchors : rosetta.utility.vector1_double) -> NoneType   2. anchors(rosetta.protocols.protein_interface_design.filters.BoltzmannFilter) -> rosetta.utility.vector1_double apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.protein_interface_design.filters.BoltzmannFilter, pose : rosetta.core.pose.Pose) -> bool   Constructor with a single target residue clone(...) from builtins.PyCapsule clone(rosetta.protocols.protein_interface_design.filters.BoltzmannFilter) -> rosetta.protocols.filters.Filter compute(...) from builtins.PyCapsule compute(self : rosetta.protocols.protein_interface_design.filters.BoltzmannFilter, pose : rosetta.core.pose.Pose) -> float fitness_threshold(...) from builtins.PyCapsule fitness_threshold(*args, **kwargs) Overloaded function.   1. fitness_threshold(rosetta.protocols.protein_interface_design.filters.BoltzmannFilter) -> float   2. fitness_threshold(self : rosetta.protocols.protein_interface_design.filters.BoltzmannFilter, f : float) -> NoneType fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.protein_interface_design.filters.BoltzmannFilter) -> rosetta.protocols.filters.Filter get_negative_filters(...) from builtins.PyCapsule get_negative_filters(rosetta.protocols.protein_interface_design.filters.BoltzmannFilter) -> rosetta.utility.vector1_std_shared_ptr_protocols_filters_Filter_t get_positive_filters(...) from builtins.PyCapsule get_positive_filters(rosetta.protocols.protein_interface_design.filters.BoltzmannFilter) -> rosetta.utility.vector1_std_shared_ptr_protocols_filters_Filter_t norm_neg(...) from builtins.PyCapsule norm_neg(*args, **kwargs) Overloaded function.   1. norm_neg(rosetta.protocols.protein_interface_design.filters.BoltzmannFilter) -> bool   2. norm_neg(self : rosetta.protocols.protein_interface_design.filters.BoltzmannFilter, n : bool) -> NoneType report_sm(...) from builtins.PyCapsule report_sm(self : rosetta.protocols.protein_interface_design.filters.BoltzmannFilter, pose : rosetta.core.pose.Pose) -> float temperature(...) from builtins.PyCapsule temperature(*args, **kwargs) Overloaded function.   1. temperature(self : rosetta.protocols.protein_interface_design.filters.BoltzmannFilter, temp : float) -> NoneType   2. temperature(rosetta.protocols.protein_interface_design.filters.BoltzmannFilter) -> float triage_threshold(...) from builtins.PyCapsule triage_threshold(*args, **kwargs) Overloaded function.   1. triage_threshold(self : rosetta.protocols.protein_interface_design.filters.BoltzmannFilter, t : float) -> NoneType   2. triage_threshold(rosetta.protocols.protein_interface_design.filters.BoltzmannFilter) -> float Methods inherited from rosetta.protocols.filters.Filter: clear(...) from builtins.PyCapsule clear(rosetta.protocols.filters.Filter) -> NoneType   used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.filters.Filter) -> str get_user_defined_name(...) from builtins.PyCapsule get_user_defined_name(rosetta.protocols.filters.Filter) -> str name(...) from builtins.PyCapsule name(rosetta.protocols.filters.Filter) -> str score(...) from builtins.PyCapsule score(self : rosetta.protocols.filters.Filter, pose : rosetta.core.pose.Pose) -> float set_user_defined_name(...) from builtins.PyCapsule set_user_defined_name(self : rosetta.protocols.filters.Filter, name : str) -> NoneType   class BoltzmannFilterCreator(rosetta.protocols.filters.FilterCreator)       Method resolution order: BoltzmannFilterCreator rosetta.protocols.filters.FilterCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.protein_interface_design.filters.BoltzmannFilterCreator,  : rosetta.protocols.protein_interface_design.filters.BoltzmannFilterCreator) -> rosetta.protocols.protein_interface_design.filters.BoltzmannFilterCreator create_filter(...) from builtins.PyCapsule create_filter(rosetta.protocols.protein_interface_design.filters.BoltzmannFilterCreator) -> rosetta.protocols.filters.Filter keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.protein_interface_design.filters.BoltzmannFilterCreator) -> str   class ClashWithTargetFilter(rosetta.protocols.filters.Filter)       Method resolution order: ClashWithTargetFilter rosetta.protocols.filters.Filter builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.protein_interface_design.filters.ClashWithTargetFilter) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.protein_interface_design.filters.ClashWithTargetFilter, pose : rosetta.core.pose.Pose) -> bool clone(...) from builtins.PyCapsule clone(rosetta.protocols.protein_interface_design.filters.ClashWithTargetFilter) -> rosetta.protocols.filters.Filter compute(...) from builtins.PyCapsule compute(self : rosetta.protocols.protein_interface_design.filters.ClashWithTargetFilter, pose : rosetta.core.pose.Pose) -> int fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.protein_interface_design.filters.ClashWithTargetFilter) -> rosetta.protocols.filters.Filter report_sm(...) from builtins.PyCapsule report_sm(self : rosetta.protocols.protein_interface_design.filters.ClashWithTargetFilter, pose : rosetta.core.pose.Pose) -> float Methods inherited from rosetta.protocols.filters.Filter: clear(...) from builtins.PyCapsule clear(rosetta.protocols.filters.Filter) -> NoneType   used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.filters.Filter) -> str get_user_defined_name(...) from builtins.PyCapsule get_user_defined_name(rosetta.protocols.filters.Filter) -> str name(...) from builtins.PyCapsule name(rosetta.protocols.filters.Filter) -> str score(...) from builtins.PyCapsule score(self : rosetta.protocols.filters.Filter, pose : rosetta.core.pose.Pose) -> float set_user_defined_name(...) from builtins.PyCapsule set_user_defined_name(self : rosetta.protocols.filters.Filter, name : str) -> NoneType   class ClashWithTargetFilterCreator(rosetta.protocols.filters.FilterCreator)       Method resolution order: ClashWithTargetFilterCreator rosetta.protocols.filters.FilterCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.protein_interface_design.filters.ClashWithTargetFilterCreator,  : rosetta.protocols.protein_interface_design.filters.ClashWithTargetFilterCreator) -> rosetta.protocols.protein_interface_design.filters.ClashWithTargetFilterCreator create_filter(...) from builtins.PyCapsule create_filter(rosetta.protocols.protein_interface_design.filters.ClashWithTargetFilterCreator) -> rosetta.protocols.filters.Filter keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.protein_interface_design.filters.ClashWithTargetFilterCreator) -> str   class DesignableResiduesFilter(rosetta.protocols.filters.Filter)       Method resolution order: DesignableResiduesFilter rosetta.protocols.filters.Filter builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.protein_interface_design.filters.DesignableResiduesFilter) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.protein_interface_design.filters.DesignableResiduesFilter, pose : rosetta.core.pose.Pose) -> bool   Constructor with a single target residue clone(...) from builtins.PyCapsule clone(rosetta.protocols.protein_interface_design.filters.DesignableResiduesFilter) -> rosetta.protocols.filters.Filter compute(...) from builtins.PyCapsule compute(self : rosetta.protocols.protein_interface_design.filters.DesignableResiduesFilter, pose : rosetta.core.pose.Pose) -> int designable(...) from builtins.PyCapsule designable(*args, **kwargs) Overloaded function.   1. designable(rosetta.protocols.protein_interface_design.filters.DesignableResiduesFilter) -> bool   2. designable(self : rosetta.protocols.protein_interface_design.filters.DesignableResiduesFilter, d : bool) -> NoneType fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.protein_interface_design.filters.DesignableResiduesFilter) -> rosetta.protocols.filters.Filter lower_threshold(...) from builtins.PyCapsule lower_threshold(*args, **kwargs) Overloaded function.   1. lower_threshold(rosetta.protocols.protein_interface_design.filters.DesignableResiduesFilter) -> int   2. lower_threshold(self : rosetta.protocols.protein_interface_design.filters.DesignableResiduesFilter, l : int) -> NoneType packable(...) from builtins.PyCapsule packable(*args, **kwargs) Overloaded function.   1. packable(rosetta.protocols.protein_interface_design.filters.DesignableResiduesFilter) -> bool   2. packable(self : rosetta.protocols.protein_interface_design.filters.DesignableResiduesFilter, p : bool) -> NoneType report_sm(...) from builtins.PyCapsule report_sm(self : rosetta.protocols.protein_interface_design.filters.DesignableResiduesFilter, pose : rosetta.core.pose.Pose) -> float task_factory(...) from builtins.PyCapsule task_factory(*args, **kwargs) Overloaded function.   1. task_factory(rosetta.protocols.protein_interface_design.filters.DesignableResiduesFilter) -> rosetta.core.pack.task.TaskFactory   2. task_factory(self : rosetta.protocols.protein_interface_design.filters.DesignableResiduesFilter, task_factory : rosetta.core.pack.task.TaskFactory) -> NoneType upper_threshold(...) from builtins.PyCapsule upper_threshold(*args, **kwargs) Overloaded function.   1. upper_threshold(rosetta.protocols.protein_interface_design.filters.DesignableResiduesFilter) -> int   2. upper_threshold(self : rosetta.protocols.protein_interface_design.filters.DesignableResiduesFilter, u : int) -> NoneType Methods inherited from rosetta.protocols.filters.Filter: clear(...) from builtins.PyCapsule clear(rosetta.protocols.filters.Filter) -> NoneType   used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.filters.Filter) -> str get_user_defined_name(...) from builtins.PyCapsule get_user_defined_name(rosetta.protocols.filters.Filter) -> str name(...) from builtins.PyCapsule name(rosetta.protocols.filters.Filter) -> str score(...) from builtins.PyCapsule score(self : rosetta.protocols.filters.Filter, pose : rosetta.core.pose.Pose) -> float set_user_defined_name(...) from builtins.PyCapsule set_user_defined_name(self : rosetta.protocols.filters.Filter, name : str) -> NoneType   class DesignableResiduesFilterCreator(rosetta.protocols.filters.FilterCreator)       Method resolution order: DesignableResiduesFilterCreator rosetta.protocols.filters.FilterCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.protein_interface_design.filters.DesignableResiduesFilterCreator,  : rosetta.protocols.protein_interface_design.filters.DesignableResiduesFilterCreator) -> rosetta.protocols.protein_interface_design.filters.DesignableResiduesFilterCreator create_filter(...) from builtins.PyCapsule create_filter(rosetta.protocols.protein_interface_design.filters.DesignableResiduesFilterCreator) -> rosetta.protocols.filters.Filter keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.protein_interface_design.filters.DesignableResiduesFilterCreator) -> str   class DisulfideFilter(rosetta.protocols.filters.Filter)     Filters for structures which could form a disulfide bond across the docking interface.     Use this filter when you are trying to design one docking member so that it forms a disulfide bond to one or more target residues of the other docking partner. The filter does not consider the indentities of the residues involved, only their Cb position.   This filter only applies to centroid poses. Calling it with a full atom pose will result in everything failing.     Spencer Bliven <blivens.washington.edu>     Method resolution order: DisulfideFilter rosetta.protocols.filters.Filter builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.protein_interface_design.filters.DisulfideFilter) -> NoneType   3. __init__(self : handle, targetResidue : int) -> NoneType   4. __init__(self : handle, targetResidues : rosetta.utility.vector1_unsigned_long) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.protein_interface_design.filters.DisulfideFilter, pose : rosetta.core.pose.Pose) -> bool clone(...) from builtins.PyCapsule clone(rosetta.protocols.protein_interface_design.filters.DisulfideFilter) -> rosetta.protocols.filters.Filter fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.protein_interface_design.filters.DisulfideFilter) -> rosetta.protocols.filters.Filter report_sm(...) from builtins.PyCapsule report_sm(self : rosetta.protocols.protein_interface_design.filters.DisulfideFilter, pose : rosetta.core.pose.Pose) -> float Methods inherited from rosetta.protocols.filters.Filter: clear(...) from builtins.PyCapsule clear(rosetta.protocols.filters.Filter) -> NoneType   used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.filters.Filter) -> str get_user_defined_name(...) from builtins.PyCapsule get_user_defined_name(rosetta.protocols.filters.Filter) -> str name(...) from builtins.PyCapsule name(rosetta.protocols.filters.Filter) -> str score(...) from builtins.PyCapsule score(self : rosetta.protocols.filters.Filter, pose : rosetta.core.pose.Pose) -> float set_user_defined_name(...) from builtins.PyCapsule set_user_defined_name(self : rosetta.protocols.filters.Filter, name : str) -> NoneType   class DisulfideFilterCreator(rosetta.protocols.filters.FilterCreator)       Method resolution order: DisulfideFilterCreator rosetta.protocols.filters.FilterCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.protein_interface_design.filters.DisulfideFilterCreator,  : rosetta.protocols.protein_interface_design.filters.DisulfideFilterCreator) -> rosetta.protocols.protein_interface_design.filters.DisulfideFilterCreator create_filter(...) from builtins.PyCapsule create_filter(rosetta.protocols.protein_interface_design.filters.DisulfideFilterCreator) -> rosetta.protocols.filters.Filter keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.protein_interface_design.filters.DisulfideFilterCreator) -> str   class FNatFilter(rosetta.protocols.filters.Filter)       Method resolution order: FNatFilter rosetta.protocols.filters.Filter builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, movable_jumps : rosetta.utility.vector1_int, threshold : float, reference_pose : rosetta.core.pose.Pose) -> NoneType   3. __init__(handle, rosetta.protocols.protein_interface_design.filters.FNatFilter) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.protein_interface_design.filters.FNatFilter, pose : rosetta.core.pose.Pose) -> bool clone(...) from builtins.PyCapsule clone(rosetta.protocols.protein_interface_design.filters.FNatFilter) -> rosetta.protocols.filters.Filter compute(...) from builtins.PyCapsule compute(self : rosetta.protocols.protein_interface_design.filters.FNatFilter, pose : rosetta.core.pose.Pose) -> float fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.protein_interface_design.filters.FNatFilter) -> rosetta.protocols.filters.Filter report_sm(...) from builtins.PyCapsule report_sm(self : rosetta.protocols.protein_interface_design.filters.FNatFilter, pose : rosetta.core.pose.Pose) -> float Methods inherited from rosetta.protocols.filters.Filter: clear(...) from builtins.PyCapsule clear(rosetta.protocols.filters.Filter) -> NoneType   used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.filters.Filter) -> str get_user_defined_name(...) from builtins.PyCapsule get_user_defined_name(rosetta.protocols.filters.Filter) -> str name(...) from builtins.PyCapsule name(rosetta.protocols.filters.Filter) -> str score(...) from builtins.PyCapsule score(self : rosetta.protocols.filters.Filter, pose : rosetta.core.pose.Pose) -> float set_user_defined_name(...) from builtins.PyCapsule set_user_defined_name(self : rosetta.protocols.filters.Filter, name : str) -> NoneType   class FNatFilterCreator(rosetta.protocols.filters.FilterCreator)       Method resolution order: FNatFilterCreator rosetta.protocols.filters.FilterCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.protein_interface_design.filters.FNatFilterCreator,  : rosetta.protocols.protein_interface_design.filters.FNatFilterCreator) -> rosetta.protocols.protein_interface_design.filters.FNatFilterCreator create_filter(...) from builtins.PyCapsule create_filter(rosetta.protocols.protein_interface_design.filters.FNatFilterCreator) -> rosetta.protocols.filters.Filter keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.protein_interface_design.filters.FNatFilterCreator) -> str   class FilterScanFilter(rosetta.protocols.filters.Filter)       Method resolution order: FilterScanFilter rosetta.protocols.filters.Filter builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.protein_interface_design.filters.FilterScanFilter) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.protein_interface_design.filters.FilterScanFilter, pose : rosetta.core.pose.Pose) -> bool   Constructor with a single target residue clone(...) from builtins.PyCapsule clone(rosetta.protocols.protein_interface_design.filters.FilterScanFilter) -> rosetta.protocols.filters.Filter delta(...) from builtins.PyCapsule delta(*args, **kwargs) Overloaded function.   1. delta(rosetta.protocols.protein_interface_design.filters.FilterScanFilter) -> bool   2. delta(self : rosetta.protocols.protein_interface_design.filters.FilterScanFilter, d : bool) -> NoneType delta_filter_thresholds(...) from builtins.PyCapsule delta_filter_thresholds(*args, **kwargs) Overloaded function.   1. delta_filter_thresholds(rosetta.protocols.protein_interface_design.filters.FilterScanFilter) -> rosetta.utility.vector1_double   2. delta_filter_thresholds(self : rosetta.protocols.protein_interface_design.filters.FilterScanFilter,  : rosetta.utility.vector1_double) -> NoneType delta_filters(...) from builtins.PyCapsule delta_filters(*args, **kwargs) Overloaded function.   1. delta_filters(rosetta.protocols.protein_interface_design.filters.FilterScanFilter) -> rosetta.utility.vector1_std_shared_ptr_protocols_simple_filters_DeltaFilter_t   2. delta_filters(self : rosetta.protocols.protein_interface_design.filters.FilterScanFilter, d : rosetta.utility.vector1_std_shared_ptr_protocols_simple_filters_DeltaFilter_t) -> NoneType dump_pdb(...) from builtins.PyCapsule dump_pdb(*args, **kwargs) Overloaded function.   1. dump_pdb(self : rosetta.protocols.protein_interface_design.filters.FilterScanFilter, d : bool) -> NoneType   2. dump_pdb(rosetta.protocols.protein_interface_design.filters.FilterScanFilter) -> bool dump_pdb_name(...) from builtins.PyCapsule dump_pdb_name(*args, **kwargs) Overloaded function.   1. dump_pdb_name(rosetta.protocols.protein_interface_design.filters.FilterScanFilter) -> str   2. dump_pdb_name(self : rosetta.protocols.protein_interface_design.filters.FilterScanFilter, s : str) -> NoneType filter(...) from builtins.PyCapsule filter(*args, **kwargs) Overloaded function.   1. filter(rosetta.protocols.protein_interface_design.filters.FilterScanFilter) -> rosetta.protocols.filters.Filter   2. filter(self : rosetta.protocols.protein_interface_design.filters.FilterScanFilter, filter : rosetta.protocols.filters.Filter) -> NoneType fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.protein_interface_design.filters.FilterScanFilter) -> rosetta.protocols.filters.Filter jump(...) from builtins.PyCapsule jump(*args, **kwargs) Overloaded function.   1. jump(rosetta.protocols.protein_interface_design.filters.FilterScanFilter) -> int   2. jump(self : rosetta.protocols.protein_interface_design.filters.FilterScanFilter, j : int) -> NoneType keep_native(...) from builtins.PyCapsule keep_native(*args, **kwargs) Overloaded function.   1. keep_native(rosetta.protocols.protein_interface_design.filters.FilterScanFilter) -> bool   2. keep_native(self : rosetta.protocols.protein_interface_design.filters.FilterScanFilter, k : bool) -> NoneType relax_mover(...) from builtins.PyCapsule relax_mover(*args, **kwargs) Overloaded function.   1. relax_mover(self : rosetta.protocols.protein_interface_design.filters.FilterScanFilter, mover : rosetta.protocols.moves.Mover) -> NoneType   2. relax_mover(rosetta.protocols.protein_interface_design.filters.FilterScanFilter) -> rosetta.protocols.moves.Mover report_all(...) from builtins.PyCapsule report_all(*args, **kwargs) Overloaded function.   1. report_all(rosetta.protocols.protein_interface_design.filters.FilterScanFilter) -> bool   2. report_all(self : rosetta.protocols.protein_interface_design.filters.FilterScanFilter, ra : bool) -> NoneType report_sm(...) from builtins.PyCapsule report_sm(self : rosetta.protocols.protein_interface_design.filters.FilterScanFilter, pose : rosetta.core.pose.Pose) -> float resfile_general_property(...) from builtins.PyCapsule resfile_general_property(*args, **kwargs) Overloaded function.   1. resfile_general_property(rosetta.protocols.protein_interface_design.filters.FilterScanFilter) -> str   2. resfile_general_property(self : rosetta.protocols.protein_interface_design.filters.FilterScanFilter,  : str) -> NoneType resfile_name(...) from builtins.PyCapsule resfile_name(*args, **kwargs) Overloaded function.   1. resfile_name(self : rosetta.protocols.protein_interface_design.filters.FilterScanFilter, resfile_name : str) -> NoneType   2. resfile_name(rosetta.protocols.protein_interface_design.filters.FilterScanFilter) -> str rtmin(...) from builtins.PyCapsule rtmin(*args, **kwargs) Overloaded function.   1. rtmin(rosetta.protocols.protein_interface_design.filters.FilterScanFilter) -> bool   2. rtmin(self : rosetta.protocols.protein_interface_design.filters.FilterScanFilter, r : bool) -> NoneType score_log_file(...) from builtins.PyCapsule score_log_file(*args, **kwargs) Overloaded function.   1. score_log_file(self : rosetta.protocols.protein_interface_design.filters.FilterScanFilter, score_log_file : str) -> NoneType   2. score_log_file(rosetta.protocols.protein_interface_design.filters.FilterScanFilter) -> str scorefxn(...) from builtins.PyCapsule scorefxn(*args, **kwargs) Overloaded function.   1. scorefxn(rosetta.protocols.protein_interface_design.filters.FilterScanFilter) -> rosetta.core.scoring.ScoreFunction   2. scorefxn(self : rosetta.protocols.protein_interface_design.filters.FilterScanFilter, scorefxn : rosetta.core.scoring.ScoreFunction) -> NoneType single_substitution(...) from builtins.PyCapsule single_substitution(self : rosetta.protocols.protein_interface_design.filters.FilterScanFilter, pose : rosetta.core.pose.Pose, resi : int, target_aa : rosetta.core.chemical.AA) -> NoneType task_factory(...) from builtins.PyCapsule task_factory(*args, **kwargs) Overloaded function.   1. task_factory(rosetta.protocols.protein_interface_design.filters.FilterScanFilter) -> rosetta.core.pack.task.TaskFactory   Undefined, commenting out to fix PyRosetta build  core::Real compute( core::pose::Pose const & pose ) const;   2. task_factory(self : rosetta.protocols.protein_interface_design.filters.FilterScanFilter, task_factory : rosetta.core.pack.task.TaskFactory) -> NoneType triage_filter(...) from builtins.PyCapsule triage_filter(*args, **kwargs) Overloaded function.   1. triage_filter(rosetta.protocols.protein_interface_design.filters.FilterScanFilter) -> rosetta.protocols.filters.Filter   2. triage_filter(self : rosetta.protocols.protein_interface_design.filters.FilterScanFilter, filter : rosetta.protocols.filters.Filter) -> NoneType unbound(...) from builtins.PyCapsule unbound(*args, **kwargs) Overloaded function.   1. unbound(rosetta.protocols.protein_interface_design.filters.FilterScanFilter) -> bool   2. unbound(self : rosetta.protocols.protein_interface_design.filters.FilterScanFilter, u : bool) -> NoneType Methods inherited from rosetta.protocols.filters.Filter: clear(...) from builtins.PyCapsule clear(rosetta.protocols.filters.Filter) -> NoneType   used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.filters.Filter) -> str get_user_defined_name(...) from builtins.PyCapsule get_user_defined_name(rosetta.protocols.filters.Filter) -> str name(...) from builtins.PyCapsule name(rosetta.protocols.filters.Filter) -> str score(...) from builtins.PyCapsule score(self : rosetta.protocols.filters.Filter, pose : rosetta.core.pose.Pose) -> float set_user_defined_name(...) from builtins.PyCapsule set_user_defined_name(self : rosetta.protocols.filters.Filter, name : str) -> NoneType   class FilterScanFilterCreator(rosetta.protocols.filters.FilterCreator)       Method resolution order: FilterScanFilterCreator rosetta.protocols.filters.FilterCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.protein_interface_design.filters.FilterScanFilterCreator,  : rosetta.protocols.protein_interface_design.filters.FilterScanFilterCreator) -> rosetta.protocols.protein_interface_design.filters.FilterScanFilterCreator create_filter(...) from builtins.PyCapsule create_filter(rosetta.protocols.protein_interface_design.filters.FilterScanFilterCreator) -> rosetta.protocols.filters.Filter keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.protein_interface_design.filters.FilterScanFilterCreator) -> str   class HbondsToAtomFilter(rosetta.protocols.filters.Filter)     returns true if the number of hbonding partners to a particular residue exceeds a certain value This filter is useful in conjunction with DesignMinimizeHbonds class     Method resolution order: HbondsToAtomFilter rosetta.protocols.filters.Filter builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, int, int) -> NoneType   doc   3. __init__(handle, int, int, float) -> NoneType   doc   4. __init__(handle, int, int, float, bool) -> NoneType   doc   5. __init__(self : handle, resnum : int, partners : int, energy_cutoff : float, backbone : bool, sidechain : bool) -> NoneType   6. __init__(handle, rosetta.protocols.protein_interface_design.filters.HbondsToAtomFilter) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.protein_interface_design.filters.HbondsToAtomFilter, pose : rosetta.core.pose.Pose) -> bool clone(...) from builtins.PyCapsule clone(rosetta.protocols.protein_interface_design.filters.HbondsToAtomFilter) -> rosetta.protocols.filters.Filter compute(...) from builtins.PyCapsule compute(self : rosetta.protocols.protein_interface_design.filters.HbondsToAtomFilter, pose : rosetta.core.pose.Pose) -> int fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.protein_interface_design.filters.HbondsToAtomFilter) -> rosetta.protocols.filters.Filter report_sm(...) from builtins.PyCapsule report_sm(self : rosetta.protocols.protein_interface_design.filters.HbondsToAtomFilter, pose : rosetta.core.pose.Pose) -> float Methods inherited from rosetta.protocols.filters.Filter: clear(...) from builtins.PyCapsule clear(rosetta.protocols.filters.Filter) -> NoneType   used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.filters.Filter) -> str get_user_defined_name(...) from builtins.PyCapsule get_user_defined_name(rosetta.protocols.filters.Filter) -> str name(...) from builtins.PyCapsule name(rosetta.protocols.filters.Filter) -> str score(...) from builtins.PyCapsule score(self : rosetta.protocols.filters.Filter, pose : rosetta.core.pose.Pose) -> float set_user_defined_name(...) from builtins.PyCapsule set_user_defined_name(self : rosetta.protocols.filters.Filter, name : str) -> NoneType   class HbondsToAtomFilterCreator(rosetta.protocols.filters.FilterCreator)       Method resolution order: HbondsToAtomFilterCreator rosetta.protocols.filters.FilterCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.protein_interface_design.filters.HbondsToAtomFilterCreator,  : rosetta.protocols.protein_interface_design.filters.HbondsToAtomFilterCreator) -> rosetta.protocols.protein_interface_design.filters.HbondsToAtomFilterCreator create_filter(...) from builtins.PyCapsule create_filter(rosetta.protocols.protein_interface_design.filters.HbondsToAtomFilterCreator) -> rosetta.protocols.filters.Filter keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.protein_interface_design.filters.HbondsToAtomFilterCreator) -> str   class HbondsToResidueFilter(rosetta.protocols.filters.Filter)     returns true if the number of hbonding partners to a particular residue exceeds a certain value This filter is useful in conjunction with DesignMinimizeHbonds class     Method resolution order: HbondsToResidueFilter rosetta.protocols.filters.Filter builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, int, int) -> NoneType   doc   3. __init__(handle, int, int, float) -> NoneType   doc   4. __init__(handle, int, int, float, bool) -> NoneType   doc   5. __init__(handle, int, int, float, bool, bool) -> NoneType   doc   6. __init__(handle, int, int, float, bool, bool, bool) -> NoneType   doc   7. __init__(handle, int, int, float, bool, bool, bool, bool) -> NoneType   doc   8. __init__(self : handle, resnum : int, partners : int, energy_cutoff : float, backbone : bool, sidechain : bool, bb_bb : bool, from_other_chains : bool, from_same_chain : bool) -> NoneType   9. __init__(handle, rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilter) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilter, pose : rosetta.core.pose.Pose) -> bool backbone(...) from builtins.PyCapsule backbone(rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilter) -> bool   Get whether to include backbone hydrogen bonds.      I'm not sure that this is implemented properly.  (VKM -- 6 July 2015). bb_bb(...) from builtins.PyCapsule bb_bb(rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilter) -> bool   Get whether to include backbone-backbone hydrogen bonds.      I'm not sure that this is implemented properly.  (VKM -- 6 July 2015). clone(...) from builtins.PyCapsule clone(rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilter) -> rosetta.protocols.filters.Filter compute(...) from builtins.PyCapsule compute(self : rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilter, pose : rosetta.core.pose.Pose, resnum_rosetta : int) -> int   Actually compute the number of hydrogen bonds to the target residue. energy_cutoff(...) from builtins.PyCapsule energy_cutoff(rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilter) -> float   Get the threshhold for the hbond score term at which two residues are counted as being hydrogen bonded. fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilter) -> rosetta.protocols.filters.Filter from_other_chains(...) from builtins.PyCapsule from_other_chains(rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilter) -> bool   Get whether hydrogen bonds from other chains should be counted. from_same_chain(...) from builtins.PyCapsule from_same_chain(rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilter) -> bool   Get whether hydrogen bonds from the same chain should be counted. partners(...) from builtins.PyCapsule partners(rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilter) -> int   Get the minimum number of H-bond partners that this residue must have for the filter to pass. report_sm(...) from builtins.PyCapsule report_sm(self : rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilter, pose : rosetta.core.pose.Pose) -> float resnum(...) from builtins.PyCapsule resnum(rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilter) -> str   Get the residue number (a string to be parsed at apply time). set_backbone(...) from builtins.PyCapsule set_backbone(self : rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilter, val : bool) -> NoneType   Set whether to include backbone hydrogen bonds.      I'm not sure that this is implemented properly.  (VKM -- 6 July 2015). set_bb_bb(...) from builtins.PyCapsule set_bb_bb(self : rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilter, val : bool) -> NoneType   Set whether to include backbone-backbone hydrogen bonds.      I'm not sure that this is implemented properly.  (VKM -- 6 July 2015). set_energy_cutoff(...) from builtins.PyCapsule set_energy_cutoff(self : rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilter, val : float) -> NoneType   Set the threshhold for the hbond score term at which two residues are counted as being hydrogen bonded. set_from_other_chains(...) from builtins.PyCapsule set_from_other_chains(self : rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilter, val : bool) -> NoneType   Set whether hydrogen bonds from other chains should be counted. set_from_same_chain(...) from builtins.PyCapsule set_from_same_chain(self : rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilter, val : bool) -> NoneType   Set whether hydrogen bonds from the same chain should be counted. set_partners(...) from builtins.PyCapsule set_partners(self : rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilter, val : int) -> NoneType   Set the minimum number of H-bond partners that this residue must have for the filter to pass. set_resnum(...) from builtins.PyCapsule set_resnum(*args, **kwargs) Overloaded function.   1. set_resnum(self : rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilter, input : str) -> NoneType   Set the residue number (as a string to be parsed at apply time).   2. set_resnum(self : rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilter, val : int) -> NoneType   Set the residue number (as an integer -- Rosetta numbering). set_scorefxn(...) from builtins.PyCapsule set_scorefxn(self : rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilter, sfxn_in : rosetta.core.scoring.ScoreFunction) -> NoneType   Set the scorefunction to use for hbond calculation. set_selector(...) from builtins.PyCapsule set_selector(self : rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilter, selector_in : rosetta.core.select.residue_selector.ResidueSelector) -> NoneType   Set the ResidueSelector to use.      Only hydrogen bonds between this residue and the residues selected by the ResidueSelector will be counted,  if a ResidueSelector is provided. set_sidechain(...) from builtins.PyCapsule set_sidechain(self : rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilter, val : bool) -> NoneType   Set whether to include backbone hydrogen bonds.      I'm not sure that this is implemented properly.  (VKM -- 6 July 2015). sidechain(...) from builtins.PyCapsule sidechain(rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilter) -> bool   Get whether to include backbone hydrogen bonds.      I'm not sure that this is implemented properly.  (VKM -- 6 July 2015). Methods inherited from rosetta.protocols.filters.Filter: clear(...) from builtins.PyCapsule clear(rosetta.protocols.filters.Filter) -> NoneType   used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.filters.Filter) -> str get_user_defined_name(...) from builtins.PyCapsule get_user_defined_name(rosetta.protocols.filters.Filter) -> str name(...) from builtins.PyCapsule name(rosetta.protocols.filters.Filter) -> str score(...) from builtins.PyCapsule score(self : rosetta.protocols.filters.Filter, pose : rosetta.core.pose.Pose) -> float set_user_defined_name(...) from builtins.PyCapsule set_user_defined_name(self : rosetta.protocols.filters.Filter, name : str) -> NoneType   class HbondsToResidueFilterCreator(rosetta.protocols.filters.FilterCreator)       Method resolution order: HbondsToResidueFilterCreator rosetta.protocols.filters.FilterCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilterCreator,  : rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilterCreator) -> rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilterCreator create_filter(...) from builtins.PyCapsule create_filter(rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilterCreator) -> rosetta.protocols.filters.Filter keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.protein_interface_design.filters.HbondsToResidueFilterCreator) -> str   class IRmsdFilter(rosetta.protocols.filters.Filter)       Method resolution order: IRmsdFilter rosetta.protocols.filters.Filter builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, movable_jumps : rosetta.utility.vector1_int, threshold : float, reference_pose : rosetta.core.pose.Pose) -> NoneType   3. __init__(handle, rosetta.protocols.protein_interface_design.filters.IRmsdFilter) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.protein_interface_design.filters.IRmsdFilter, pose : rosetta.core.pose.Pose) -> bool clone(...) from builtins.PyCapsule clone(rosetta.protocols.protein_interface_design.filters.IRmsdFilter) -> rosetta.protocols.filters.Filter compute(...) from builtins.PyCapsule compute(self : rosetta.protocols.protein_interface_design.filters.IRmsdFilter, pose : rosetta.core.pose.Pose) -> float fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.protein_interface_design.filters.IRmsdFilter) -> rosetta.protocols.filters.Filter report_sm(...) from builtins.PyCapsule report_sm(self : rosetta.protocols.protein_interface_design.filters.IRmsdFilter, pose : rosetta.core.pose.Pose) -> float Methods inherited from rosetta.protocols.filters.Filter: clear(...) from builtins.PyCapsule clear(rosetta.protocols.filters.Filter) -> NoneType   used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.filters.Filter) -> str get_user_defined_name(...) from builtins.PyCapsule get_user_defined_name(rosetta.protocols.filters.Filter) -> str name(...) from builtins.PyCapsule name(rosetta.protocols.filters.Filter) -> str score(...) from builtins.PyCapsule score(self : rosetta.protocols.filters.Filter, pose : rosetta.core.pose.Pose) -> float set_user_defined_name(...) from builtins.PyCapsule set_user_defined_name(self : rosetta.protocols.filters.Filter, name : str) -> NoneType   class IRmsdFilterCreator(rosetta.protocols.filters.FilterCreator)       Method resolution order: IRmsdFilterCreator rosetta.protocols.filters.FilterCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.protein_interface_design.filters.IRmsdFilterCreator,  : rosetta.protocols.protein_interface_design.filters.IRmsdFilterCreator) -> rosetta.protocols.protein_interface_design.filters.IRmsdFilterCreator create_filter(...) from builtins.PyCapsule create_filter(rosetta.protocols.protein_interface_design.filters.IRmsdFilterCreator) -> rosetta.protocols.filters.Filter keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.protein_interface_design.filters.IRmsdFilterCreator) -> str   class InterfaceHolesFilter(rosetta.protocols.filters.Filter)       Method resolution order: InterfaceHolesFilter rosetta.protocols.filters.Filter builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, rb_jump : int, threshold : float) -> NoneType   3. __init__(handle, rosetta.protocols.protein_interface_design.filters.InterfaceHolesFilter) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.protein_interface_design.filters.InterfaceHolesFilter, pose : rosetta.core.pose.Pose) -> bool clone(...) from builtins.PyCapsule clone(rosetta.protocols.protein_interface_design.filters.InterfaceHolesFilter) -> rosetta.protocols.filters.Filter compute(...) from builtins.PyCapsule compute(self : rosetta.protocols.protein_interface_design.filters.InterfaceHolesFilter, pose : rosetta.core.pose.Pose) -> float fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.protein_interface_design.filters.InterfaceHolesFilter) -> rosetta.protocols.filters.Filter report_sm(...) from builtins.PyCapsule report_sm(self : rosetta.protocols.protein_interface_design.filters.InterfaceHolesFilter, pose : rosetta.core.pose.Pose) -> float Methods inherited from rosetta.protocols.filters.Filter: clear(...) from builtins.PyCapsule clear(rosetta.protocols.filters.Filter) -> NoneType   used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.filters.Filter) -> str get_user_defined_name(...) from builtins.PyCapsule get_user_defined_name(rosetta.protocols.filters.Filter) -> str name(...) from builtins.PyCapsule name(rosetta.protocols.filters.Filter) -> str score(...) from builtins.PyCapsule score(self : rosetta.protocols.filters.Filter, pose : rosetta.core.pose.Pose) -> float set_user_defined_name(...) from builtins.PyCapsule set_user_defined_name(self : rosetta.protocols.filters.Filter, name : str) -> NoneType   class InterfaceHolesFilterCreator(rosetta.protocols.filters.FilterCreator)       Method resolution order: InterfaceHolesFilterCreator rosetta.protocols.filters.FilterCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.protein_interface_design.filters.InterfaceHolesFilterCreator,  : rosetta.protocols.protein_interface_design.filters.InterfaceHolesFilterCreator) -> rosetta.protocols.protein_interface_design.filters.InterfaceHolesFilterCreator create_filter(...) from builtins.PyCapsule create_filter(rosetta.protocols.protein_interface_design.filters.InterfaceHolesFilterCreator) -> rosetta.protocols.filters.Filter keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.protein_interface_design.filters.InterfaceHolesFilterCreator) -> str   class LRmsdFilter(rosetta.protocols.filters.Filter)       Method resolution order: LRmsdFilter rosetta.protocols.filters.Filter builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, movable_jumps : rosetta.utility.vector1_int, threshold : float, reference_pose : rosetta.core.pose.Pose) -> NoneType   3. __init__(handle, rosetta.protocols.protein_interface_design.filters.LRmsdFilter) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.protein_interface_design.filters.LRmsdFilter, pose : rosetta.core.pose.Pose) -> bool clone(...) from builtins.PyCapsule clone(rosetta.protocols.protein_interface_design.filters.LRmsdFilter) -> rosetta.protocols.filters.Filter compute(...) from builtins.PyCapsule compute(self : rosetta.protocols.protein_interface_design.filters.LRmsdFilter, pose : rosetta.core.pose.Pose) -> float fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.protein_interface_design.filters.LRmsdFilter) -> rosetta.protocols.filters.Filter report_sm(...) from builtins.PyCapsule report_sm(self : rosetta.protocols.protein_interface_design.filters.LRmsdFilter, pose : rosetta.core.pose.Pose) -> float Methods inherited from rosetta.protocols.filters.Filter: clear(...) from builtins.PyCapsule clear(rosetta.protocols.filters.Filter) -> NoneType   used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.filters.Filter) -> str get_user_defined_name(...) from builtins.PyCapsule get_user_defined_name(rosetta.protocols.filters.Filter) -> str name(...) from builtins.PyCapsule name(rosetta.protocols.filters.Filter) -> str score(...) from builtins.PyCapsule score(self : rosetta.protocols.filters.Filter, pose : rosetta.core.pose.Pose) -> float set_user_defined_name(...) from builtins.PyCapsule set_user_defined_name(self : rosetta.protocols.filters.Filter, name : str) -> NoneType   class LRmsdFilterCreator(rosetta.protocols.filters.FilterCreator)       Method resolution order: LRmsdFilterCreator rosetta.protocols.filters.FilterCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.protein_interface_design.filters.LRmsdFilterCreator,  : rosetta.protocols.protein_interface_design.filters.LRmsdFilterCreator) -> rosetta.protocols.protein_interface_design.filters.LRmsdFilterCreator create_filter(...) from builtins.PyCapsule create_filter(rosetta.protocols.protein_interface_design.filters.LRmsdFilterCreator) -> rosetta.protocols.filters.Filter keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.protein_interface_design.filters.LRmsdFilterCreator) -> str   class RelativeSegmentFilter(rosetta.protocols.filters.Filter)     returns the residues aligned to a segment on the input pdb to the source pdb     Method resolution order: RelativeSegmentFilter rosetta.protocols.filters.Filter builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.protein_interface_design.filters.RelativeSegmentFilter) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.protein_interface_design.filters.RelativeSegmentFilter, pose : rosetta.core.pose.Pose) -> bool clone(...) from builtins.PyCapsule clone(rosetta.protocols.protein_interface_design.filters.RelativeSegmentFilter) -> rosetta.protocols.filters.Filter fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.protein_interface_design.filters.RelativeSegmentFilter) -> rosetta.protocols.filters.Filter report_sm(...) from builtins.PyCapsule report_sm(self : rosetta.protocols.protein_interface_design.filters.RelativeSegmentFilter, pose : rosetta.core.pose.Pose) -> float source_pose(...) from builtins.PyCapsule source_pose(*args, **kwargs) Overloaded function.   1. source_pose(rosetta.protocols.protein_interface_design.filters.RelativeSegmentFilter) -> str   2. source_pose(self : rosetta.protocols.protein_interface_design.filters.RelativeSegmentFilter, s : str) -> NoneType start_res(...) from builtins.PyCapsule start_res(*args, **kwargs) Overloaded function.   1. start_res(rosetta.protocols.protein_interface_design.filters.RelativeSegmentFilter) -> int   2. start_res(self : rosetta.protocols.protein_interface_design.filters.RelativeSegmentFilter, s : int) -> NoneType stop_res(...) from builtins.PyCapsule stop_res(*args, **kwargs) Overloaded function.   1. stop_res(rosetta.protocols.protein_interface_design.filters.RelativeSegmentFilter) -> int   2. stop_res(self : rosetta.protocols.protein_interface_design.filters.RelativeSegmentFilter, s : int) -> NoneType Methods inherited from rosetta.protocols.filters.Filter: clear(...) from builtins.PyCapsule clear(rosetta.protocols.filters.Filter) -> NoneType   used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.filters.Filter) -> str get_user_defined_name(...) from builtins.PyCapsule get_user_defined_name(rosetta.protocols.filters.Filter) -> str name(...) from builtins.PyCapsule name(rosetta.protocols.filters.Filter) -> str score(...) from builtins.PyCapsule score(self : rosetta.protocols.filters.Filter, pose : rosetta.core.pose.Pose) -> float set_user_defined_name(...) from builtins.PyCapsule set_user_defined_name(self : rosetta.protocols.filters.Filter, name : str) -> NoneType   class RelativeSegmentFilterCreator(rosetta.protocols.filters.FilterCreator)       Method resolution order: RelativeSegmentFilterCreator rosetta.protocols.filters.FilterCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.protein_interface_design.filters.RelativeSegmentFilterCreator,  : rosetta.protocols.protein_interface_design.filters.RelativeSegmentFilterCreator) -> rosetta.protocols.protein_interface_design.filters.RelativeSegmentFilterCreator create_filter(...) from builtins.PyCapsule create_filter(rosetta.protocols.protein_interface_design.filters.RelativeSegmentFilterCreator) -> rosetta.protocols.filters.Filter keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.protein_interface_design.filters.RelativeSegmentFilterCreator) -> str   class RmsdFilter(rosetta.protocols.filters.Filter)       Method resolution order: RmsdFilter rosetta.protocols.filters.Filter builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, selection : rosetta.std.list_unsigned_long_std_allocator_unsigned_long_t, superimpose : bool, threshold : float, reference_pose : rosetta.core.pose.Pose) -> NoneType   3. __init__(handle, rosetta.protocols.protein_interface_design.filters.RmsdFilter) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.protein_interface_design.filters.RmsdFilter, pose : rosetta.core.pose.Pose) -> bool by_aln(...) from builtins.PyCapsule by_aln(*args, **kwargs) Overloaded function.   1. by_aln(self : rosetta.protocols.protein_interface_design.filters.RmsdFilter, s : bool) -> NoneType   2. by_aln(rosetta.protocols.protein_interface_design.filters.RmsdFilter) -> bool clone(...) from builtins.PyCapsule clone(rosetta.protocols.protein_interface_design.filters.RmsdFilter) -> rosetta.protocols.filters.Filter compute(...) from builtins.PyCapsule compute(self : rosetta.protocols.protein_interface_design.filters.RmsdFilter, pose : rosetta.core.pose.Pose) -> float fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.protein_interface_design.filters.RmsdFilter) -> rosetta.protocols.filters.Filter reference_pose(...) from builtins.PyCapsule reference_pose(self : rosetta.protocols.protein_interface_design.filters.RmsdFilter, ref : rosetta.core.pose.Pose) -> NoneType report_sm(...) from builtins.PyCapsule report_sm(self : rosetta.protocols.protein_interface_design.filters.RmsdFilter, pose : rosetta.core.pose.Pose) -> float selection(...) from builtins.PyCapsule selection(self : rosetta.protocols.protein_interface_design.filters.RmsdFilter, sele : rosetta.std.list_unsigned_long_std_allocator_unsigned_long_t) -> NoneType superimpose(...) from builtins.PyCapsule superimpose(*args, **kwargs) Overloaded function.   1. superimpose(self : rosetta.protocols.protein_interface_design.filters.RmsdFilter, s : bool) -> NoneType   2. superimpose(rosetta.protocols.protein_interface_design.filters.RmsdFilter) -> bool superimpose_on_all(...) from builtins.PyCapsule superimpose_on_all(*args, **kwargs) Overloaded function.   1. superimpose_on_all(self : rosetta.protocols.protein_interface_design.filters.RmsdFilter, b : bool) -> NoneType   2. superimpose_on_all(rosetta.protocols.protein_interface_design.filters.RmsdFilter) -> bool Methods inherited from rosetta.protocols.filters.Filter: clear(...) from builtins.PyCapsule clear(rosetta.protocols.filters.Filter) -> NoneType   used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.filters.Filter) -> str get_user_defined_name(...) from builtins.PyCapsule get_user_defined_name(rosetta.protocols.filters.Filter) -> str name(...) from builtins.PyCapsule name(rosetta.protocols.filters.Filter) -> str score(...) from builtins.PyCapsule score(self : rosetta.protocols.filters.Filter, pose : rosetta.core.pose.Pose) -> float set_user_defined_name(...) from builtins.PyCapsule set_user_defined_name(self : rosetta.protocols.filters.Filter, name : str) -> NoneType   class RmsdFilterCreator(rosetta.protocols.filters.FilterCreator)       Method resolution order: RmsdFilterCreator rosetta.protocols.filters.FilterCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.protein_interface_design.filters.RmsdFilterCreator,  : rosetta.protocols.protein_interface_design.filters.RmsdFilterCreator) -> rosetta.protocols.protein_interface_design.filters.RmsdFilterCreator create_filter(...) from builtins.PyCapsule create_filter(rosetta.protocols.protein_interface_design.filters.RmsdFilterCreator) -> rosetta.protocols.filters.Filter keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.protein_interface_design.filters.RmsdFilterCreator) -> str   class RmsdSimpleFilter(rosetta.protocols.filters.Filter)       Method resolution order: RmsdSimpleFilter rosetta.protocols.filters.Filter builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, threshold : float, reference_pose : rosetta.core.pose.Pose) -> NoneType   3. __init__(handle, rosetta.protocols.protein_interface_design.filters.RmsdSimpleFilter) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.protein_interface_design.filters.RmsdSimpleFilter, pose : rosetta.core.pose.Pose) -> bool clone(...) from builtins.PyCapsule clone(rosetta.protocols.protein_interface_design.filters.RmsdSimpleFilter) -> rosetta.protocols.filters.Filter compute(...) from builtins.PyCapsule compute(self : rosetta.protocols.protein_interface_design.filters.RmsdSimpleFilter, pose : rosetta.core.pose.Pose) -> float fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.protein_interface_design.filters.RmsdSimpleFilter) -> rosetta.protocols.filters.Filter report_sm(...) from builtins.PyCapsule report_sm(self : rosetta.protocols.protein_interface_design.filters.RmsdSimpleFilter, pose : rosetta.core.pose.Pose) -> float Methods inherited from rosetta.protocols.filters.Filter: clear(...) from builtins.PyCapsule clear(rosetta.protocols.filters.Filter) -> NoneType   used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.filters.Filter) -> str get_user_defined_name(...) from builtins.PyCapsule get_user_defined_name(rosetta.protocols.filters.Filter) -> str name(...) from builtins.PyCapsule name(rosetta.protocols.filters.Filter) -> str score(...) from builtins.PyCapsule score(self : rosetta.protocols.filters.Filter, pose : rosetta.core.pose.Pose) -> float set_user_defined_name(...) from builtins.PyCapsule set_user_defined_name(self : rosetta.protocols.filters.Filter, name : str) -> NoneType   class RmsdSimpleFilterCreator(rosetta.protocols.filters.FilterCreator)       Method resolution order: RmsdSimpleFilterCreator rosetta.protocols.filters.FilterCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.protein_interface_design.filters.RmsdSimpleFilterCreator,  : rosetta.protocols.protein_interface_design.filters.RmsdSimpleFilterCreator) -> rosetta.protocols.protein_interface_design.filters.RmsdSimpleFilterCreator create_filter(...) from builtins.PyCapsule create_filter(rosetta.protocols.protein_interface_design.filters.RmsdSimpleFilterCreator) -> rosetta.protocols.filters.Filter keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.protein_interface_design.filters.RmsdSimpleFilterCreator) -> str   class SSamountFilter(rosetta.protocols.filters.Filter)       Method resolution order: SSamountFilter rosetta.protocols.filters.Filter builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, upper_threshold : float, lower_threshold : float, target_chain : int, b_target_chain : bool, b_discard_lonely_SS : bool) -> NoneType   3. __init__(handle, rosetta.protocols.protein_interface_design.filters.SSamountFilter) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.protein_interface_design.filters.SSamountFilter, pose : rosetta.core.pose.Pose) -> bool clone(...) from builtins.PyCapsule clone(rosetta.protocols.protein_interface_design.filters.SSamountFilter) -> rosetta.protocols.filters.Filter compute(...) from builtins.PyCapsule compute(self : rosetta.protocols.protein_interface_design.filters.SSamountFilter, pose : rosetta.core.pose.Pose) -> float fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.protein_interface_design.filters.SSamountFilter) -> rosetta.protocols.filters.Filter report_sm(...) from builtins.PyCapsule report_sm(self : rosetta.protocols.protein_interface_design.filters.SSamountFilter, pose : rosetta.core.pose.Pose) -> float Methods inherited from rosetta.protocols.filters.Filter: clear(...) from builtins.PyCapsule clear(rosetta.protocols.filters.Filter) -> NoneType   used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.filters.Filter) -> str get_user_defined_name(...) from builtins.PyCapsule get_user_defined_name(rosetta.protocols.filters.Filter) -> str name(...) from builtins.PyCapsule name(rosetta.protocols.filters.Filter) -> str score(...) from builtins.PyCapsule score(self : rosetta.protocols.filters.Filter, pose : rosetta.core.pose.Pose) -> float set_user_defined_name(...) from builtins.PyCapsule set_user_defined_name(self : rosetta.protocols.filters.Filter, name : str) -> NoneType   class SSamountFilterCreator(rosetta.protocols.filters.FilterCreator)       Method resolution order: SSamountFilterCreator rosetta.protocols.filters.FilterCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.protein_interface_design.filters.SSamountFilterCreator,  : rosetta.protocols.protein_interface_design.filters.SSamountFilterCreator) -> rosetta.protocols.protein_interface_design.filters.SSamountFilterCreator create_filter(...) from builtins.PyCapsule create_filter(rosetta.protocols.protein_interface_design.filters.SSamountFilterCreator) -> rosetta.protocols.filters.Filter keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.protein_interface_design.filters.SSamountFilterCreator) -> str   class SequenceRecoveryFilter(rosetta.protocols.filters.Filter)       Method resolution order: SequenceRecoveryFilter rosetta.protocols.filters.Filter builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.protein_interface_design.filters.SequenceRecoveryFilter) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.protein_interface_design.filters.SequenceRecoveryFilter, pose : rosetta.core.pose.Pose) -> bool   Constructor with a single target residue clone(...) from builtins.PyCapsule clone(rosetta.protocols.protein_interface_design.filters.SequenceRecoveryFilter) -> rosetta.protocols.filters.Filter compute(...) from builtins.PyCapsule compute(self : rosetta.protocols.protein_interface_design.filters.SequenceRecoveryFilter, pose : rosetta.core.pose.Pose, write : bool) -> float fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.protein_interface_design.filters.SequenceRecoveryFilter) -> rosetta.protocols.filters.Filter mutation_threshold(...) from builtins.PyCapsule mutation_threshold(*args, **kwargs) Overloaded function.   1. mutation_threshold(rosetta.protocols.protein_interface_design.filters.SequenceRecoveryFilter) -> int   2. mutation_threshold(self : rosetta.protocols.protein_interface_design.filters.SequenceRecoveryFilter, mut : int) -> NoneType mutations(...) from builtins.PyCapsule mutations(*args, **kwargs) Overloaded function.   1. mutations(rosetta.protocols.protein_interface_design.filters.SequenceRecoveryFilter) -> bool   2. mutations(self : rosetta.protocols.protein_interface_design.filters.SequenceRecoveryFilter, muts : bool) -> NoneType rate_threshold(...) from builtins.PyCapsule rate_threshold(*args, **kwargs) Overloaded function.   1. rate_threshold(rosetta.protocols.protein_interface_design.filters.SequenceRecoveryFilter) -> float   2. rate_threshold(self : rosetta.protocols.protein_interface_design.filters.SequenceRecoveryFilter, rate : float) -> NoneType reference_pose(...) from builtins.PyCapsule reference_pose(*args, **kwargs) Overloaded function.   1. reference_pose(rosetta.protocols.protein_interface_design.filters.SequenceRecoveryFilter) -> rosetta.core.pose.Pose   2. reference_pose(self : rosetta.protocols.protein_interface_design.filters.SequenceRecoveryFilter, reference_pose : rosetta.core.pose.Pose) -> NoneType   3. reference_pose(self : rosetta.protocols.protein_interface_design.filters.SequenceRecoveryFilter, pose : rosetta.core.pose.Pose) -> NoneType report_sm(...) from builtins.PyCapsule report_sm(self : rosetta.protocols.protein_interface_design.filters.SequenceRecoveryFilter, pose : rosetta.core.pose.Pose) -> float scorefxn(...) from builtins.PyCapsule scorefxn(self : rosetta.protocols.protein_interface_design.filters.SequenceRecoveryFilter, sfx : rosetta.core.scoring.ScoreFunction) -> NoneType task_factory(...) from builtins.PyCapsule task_factory(*args, **kwargs) Overloaded function.   1. task_factory(rosetta.protocols.protein_interface_design.filters.SequenceRecoveryFilter) -> rosetta.core.pack.task.TaskFactory   2. task_factory(self : rosetta.protocols.protein_interface_design.filters.SequenceRecoveryFilter, task_factory : rosetta.core.pack.task.TaskFactory) -> NoneType verbose(...) from builtins.PyCapsule verbose(*args, **kwargs) Overloaded function.   1. verbose(rosetta.protocols.protein_interface_design.filters.SequenceRecoveryFilter) -> bool   2. verbose(self : rosetta.protocols.protein_interface_design.filters.SequenceRecoveryFilter, verb : bool) -> NoneType write2pdb(...) from builtins.PyCapsule write2pdb(*args, **kwargs) Overloaded function.   1. write2pdb(rosetta.protocols.protein_interface_design.filters.SequenceRecoveryFilter) -> bool   2. write2pdb(self : rosetta.protocols.protein_interface_design.filters.SequenceRecoveryFilter, write : bool) -> NoneType write_to_pdb(...) from builtins.PyCapsule write_to_pdb(self : rosetta.protocols.protein_interface_design.filters.SequenceRecoveryFilter, res_names1 : rosetta.std.map_unsigned_long_std_string, res_names2 : rosetta.std.map_unsigned_long_std_string) -> NoneType Methods inherited from rosetta.protocols.filters.Filter: clear(...) from builtins.PyCapsule clear(rosetta.protocols.filters.Filter) -> NoneType   used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.filters.Filter) -> str get_user_defined_name(...) from builtins.PyCapsule get_user_defined_name(rosetta.protocols.filters.Filter) -> str name(...) from builtins.PyCapsule name(rosetta.protocols.filters.Filter) -> str score(...) from builtins.PyCapsule score(self : rosetta.protocols.filters.Filter, pose : rosetta.core.pose.Pose) -> float set_user_defined_name(...) from builtins.PyCapsule set_user_defined_name(self : rosetta.protocols.filters.Filter, name : str) -> NoneType   class SequenceRecoveryFilterCreator(rosetta.protocols.filters.FilterCreator)       Method resolution order: SequenceRecoveryFilterCreator rosetta.protocols.filters.FilterCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.protein_interface_design.filters.SequenceRecoveryFilterCreator,  : rosetta.protocols.protein_interface_design.filters.SequenceRecoveryFilterCreator) -> rosetta.protocols.protein_interface_design.filters.SequenceRecoveryFilterCreator create_filter(...) from builtins.PyCapsule create_filter(rosetta.protocols.protein_interface_design.filters.SequenceRecoveryFilterCreator) -> rosetta.protocols.filters.Filter keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.protein_interface_design.filters.SequenceRecoveryFilterCreator) -> str   class SpecificResiduesNearInterfaceFilter(rosetta.protocols.filters.Filter)       Method resolution order: SpecificResiduesNearInterfaceFilter rosetta.protocols.filters.Filter builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.protein_interface_design.filters.SpecificResiduesNearInterfaceFilter) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.protein_interface_design.filters.SpecificResiduesNearInterfaceFilter, pose : rosetta.core.pose.Pose) -> bool clone(...) from builtins.PyCapsule clone(rosetta.protocols.protein_interface_design.filters.SpecificResiduesNearInterfaceFilter) -> rosetta.protocols.filters.Filter compute(...) from builtins.PyCapsule compute(self : rosetta.protocols.protein_interface_design.filters.SpecificResiduesNearInterfaceFilter, pose : rosetta.core.pose.Pose) -> int   Constructor with a single target residue fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.protein_interface_design.filters.SpecificResiduesNearInterfaceFilter) -> rosetta.protocols.filters.Filter report_sm(...) from builtins.PyCapsule report_sm(self : rosetta.protocols.protein_interface_design.filters.SpecificResiduesNearInterfaceFilter, pose : rosetta.core.pose.Pose) -> float task_factory(...) from builtins.PyCapsule task_factory(*args, **kwargs) Overloaded function.   1. task_factory(rosetta.protocols.protein_interface_design.filters.SpecificResiduesNearInterfaceFilter) -> rosetta.core.pack.task.TaskFactory   2. task_factory(self : rosetta.protocols.protein_interface_design.filters.SpecificResiduesNearInterfaceFilter, tf : rosetta.core.pack.task.TaskFactory) -> NoneType Methods inherited from rosetta.protocols.filters.Filter: clear(...) from builtins.PyCapsule clear(rosetta.protocols.filters.Filter) -> NoneType   used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.filters.Filter) -> str get_user_defined_name(...) from builtins.PyCapsule get_user_defined_name(rosetta.protocols.filters.Filter) -> str name(...) from builtins.PyCapsule name(rosetta.protocols.filters.Filter) -> str score(...) from builtins.PyCapsule score(self : rosetta.protocols.filters.Filter, pose : rosetta.core.pose.Pose) -> float set_user_defined_name(...) from builtins.PyCapsule set_user_defined_name(self : rosetta.protocols.filters.Filter, name : str) -> NoneType   class SpecificResiduesNearInterfaceFilterCreator(rosetta.protocols.filters.FilterCreator)       Method resolution order: SpecificResiduesNearInterfaceFilterCreator rosetta.protocols.filters.FilterCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.protein_interface_design.filters.SpecificResiduesNearInterfaceFilterCreator,  : rosetta.protocols.protein_interface_design.filters.SpecificResiduesNearInterfaceFilterCreator) -> rosetta.protocols.protein_interface_design.filters.SpecificResiduesNearInterfaceFilterCreator create_filter(...) from builtins.PyCapsule create_filter(rosetta.protocols.protein_interface_design.filters.SpecificResiduesNearInterfaceFilterCreator) -> rosetta.protocols.filters.Filter keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.protein_interface_design.filters.SpecificResiduesNearInterfaceFilterCreator) -> str   class StubScoreFilter(rosetta.protocols.filters.Filter)       Method resolution order: StubScoreFilter rosetta.protocols.filters.Filter builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.protein_interface_design.filters.StubScoreFilter) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.protein_interface_design.filters.StubScoreFilter, pose : rosetta.core.pose.Pose) -> bool   Constructor with a single target residue clone(...) from builtins.PyCapsule clone(rosetta.protocols.protein_interface_design.filters.StubScoreFilter) -> rosetta.protocols.filters.Filter compute(...) from builtins.PyCapsule compute(self : rosetta.protocols.protein_interface_design.filters.StubScoreFilter, pose : rosetta.core.pose.Pose) -> float fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.protein_interface_design.filters.StubScoreFilter) -> rosetta.protocols.filters.Filter report_sm(...) from builtins.PyCapsule report_sm(self : rosetta.protocols.protein_interface_design.filters.StubScoreFilter, pose : rosetta.core.pose.Pose) -> float stub_sets(...) from builtins.PyCapsule stub_sets(self : rosetta.protocols.protein_interface_design.filters.StubScoreFilter, stub_sets : rosetta.utility.vector1_std_pair_std_shared_ptr_protocols_hotspot_hashing_HotspotStubSet_std_pair_std_shared_ptr_protocols_hotspot_hashing_HotspotStub_unsigned_long_t) -> NoneType Methods inherited from rosetta.protocols.filters.Filter: clear(...) from builtins.PyCapsule clear(rosetta.protocols.filters.Filter) -> NoneType   used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.filters.Filter) -> str get_user_defined_name(...) from builtins.PyCapsule get_user_defined_name(rosetta.protocols.filters.Filter) -> str name(...) from builtins.PyCapsule name(rosetta.protocols.filters.Filter) -> str score(...) from builtins.PyCapsule score(self : rosetta.protocols.filters.Filter, pose : rosetta.core.pose.Pose) -> float set_user_defined_name(...) from builtins.PyCapsule set_user_defined_name(self : rosetta.protocols.filters.Filter, name : str) -> NoneType   class StubScoreFilterCreator(rosetta.protocols.filters.FilterCreator)       Method resolution order: StubScoreFilterCreator rosetta.protocols.filters.FilterCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.protein_interface_design.filters.StubScoreFilterCreator,  : rosetta.protocols.protein_interface_design.filters.StubScoreFilterCreator) -> rosetta.protocols.protein_interface_design.filters.StubScoreFilterCreator create_filter(...) from builtins.PyCapsule create_filter(rosetta.protocols.protein_interface_design.filters.StubScoreFilterCreator) -> rosetta.protocols.filters.Filter keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.protein_interface_design.filters.StubScoreFilterCreator) -> str   class StubScoreLoopsFilter(rosetta.protocols.simple_filters.ConstraintScoreCutoffFilter)       Method resolution order: StubScoreLoopsFilter rosetta.protocols.simple_filters.ConstraintScoreCutoffFilter rosetta.protocols.filters.Filter builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.protein_interface_design.filters.StubScoreLoopsFilter) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. clone(...) from builtins.PyCapsule clone(rosetta.protocols.protein_interface_design.filters.StubScoreLoopsFilter) -> rosetta.protocols.filters.Filter fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.protein_interface_design.filters.StubScoreLoopsFilter) -> rosetta.protocols.filters.Filter Methods inherited from rosetta.protocols.simple_filters.ConstraintScoreCutoffFilter: apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.simple_filters.ConstraintScoreCutoffFilter, pose : rosetta.core.pose.Pose) -> bool   Returns true if the given pose passes the filter, false otherwise.  In this case, the test is the result of the following comparison:  sc <= cutoff  Where cutoff is the cutoff set for this filter, and sc is the value of the  ScoreType from the Pose Energies object. cutoff(...) from builtins.PyCapsule cutoff(rosetta.protocols.simple_filters.ConstraintScoreCutoffFilter) -> float get_score(...) from builtins.PyCapsule get_score(self : rosetta.protocols.simple_filters.ConstraintScoreCutoffFilter, pose : rosetta.core.pose.Pose) -> float name(...) from builtins.PyCapsule name(rosetta.protocols.simple_filters.ConstraintScoreCutoffFilter) -> str set_constraints(...) from builtins.PyCapsule set_constraints(self : rosetta.protocols.simple_filters.ConstraintScoreCutoffFilter, cst_in : rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t) -> NoneType set_cutoff(...) from builtins.PyCapsule set_cutoff(*args, **kwargs) Overloaded function.   1. set_cutoff(self : rosetta.protocols.simple_filters.ConstraintScoreCutoffFilter, cutoff_in : float) -> NoneType   2. set_cutoff(self : rosetta.protocols.simple_filters.ConstraintScoreCutoffFilter, pose : rosetta.core.pose.Pose) -> NoneType set_score_type(...) from builtins.PyCapsule set_score_type(self : rosetta.protocols.simple_filters.ConstraintScoreCutoffFilter, scotype : rosetta.core.scoring.ScoreType) -> NoneType Methods inherited from rosetta.protocols.filters.Filter: clear(...) from builtins.PyCapsule clear(rosetta.protocols.filters.Filter) -> NoneType   used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.filters.Filter) -> str get_user_defined_name(...) from builtins.PyCapsule get_user_defined_name(rosetta.protocols.filters.Filter) -> str report_sm(...) from builtins.PyCapsule report_sm(self : rosetta.protocols.filters.Filter,  : rosetta.core.pose.Pose) -> float score(...) from builtins.PyCapsule score(self : rosetta.protocols.filters.Filter, pose : rosetta.core.pose.Pose) -> float set_user_defined_name(...) from builtins.PyCapsule set_user_defined_name(self : rosetta.protocols.filters.Filter, name : str) -> NoneType   class StubScoreLoopsFilterCreator(rosetta.protocols.filters.FilterCreator)       Method resolution order: StubScoreLoopsFilterCreator rosetta.protocols.filters.FilterCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.protein_interface_design.filters.StubScoreLoopsFilterCreator,  : rosetta.protocols.protein_interface_design.filters.StubScoreLoopsFilterCreator) -> rosetta.protocols.protein_interface_design.filters.StubScoreLoopsFilterCreator create_filter(...) from builtins.PyCapsule create_filter(rosetta.protocols.protein_interface_design.filters.StubScoreLoopsFilterCreator) -> rosetta.protocols.filters.Filter keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.protein_interface_design.filters.StubScoreLoopsFilterCreator) -> str   class Torsion(rosetta.protocols.filters.Filter)       Method resolution order: Torsion rosetta.protocols.filters.Filter builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.protein_interface_design.filters.Torsion) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.protein_interface_design.filters.Torsion, pose : rosetta.core.pose.Pose) -> bool   Constructor with a single target residue clone(...) from builtins.PyCapsule clone(rosetta.protocols.protein_interface_design.filters.Torsion) -> rosetta.protocols.filters.Filter compute(...) from builtins.PyCapsule compute(self : rosetta.protocols.protein_interface_design.filters.Torsion, pose : rosetta.core.pose.Pose) -> float fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.protein_interface_design.filters.Torsion) -> rosetta.protocols.filters.Filter lower(...) from builtins.PyCapsule lower(*args, **kwargs) Overloaded function.   1. lower(rosetta.protocols.protein_interface_design.filters.Torsion) -> float   2. lower(self : rosetta.protocols.protein_interface_design.filters.Torsion, l : float) -> NoneType report_sm(...) from builtins.PyCapsule report_sm(self : rosetta.protocols.protein_interface_design.filters.Torsion, pose : rosetta.core.pose.Pose) -> float resnum(...) from builtins.PyCapsule resnum(*args, **kwargs) Overloaded function.   1. resnum(rosetta.protocols.protein_interface_design.filters.Torsion) -> int   2. resnum(self : rosetta.protocols.protein_interface_design.filters.Torsion, r : int) -> NoneType task_factory(...) from builtins.PyCapsule task_factory(*args, **kwargs) Overloaded function.   1. task_factory(rosetta.protocols.protein_interface_design.filters.Torsion) -> rosetta.core.pack.task.TaskFactory   2. task_factory(self : rosetta.protocols.protein_interface_design.filters.Torsion, tf : rosetta.core.pack.task.TaskFactory) -> NoneType task_factory_set(...) from builtins.PyCapsule task_factory_set(*args, **kwargs) Overloaded function.   1. task_factory_set(self : rosetta.protocols.protein_interface_design.filters.Torsion, b : bool) -> NoneType   2. task_factory_set(rosetta.protocols.protein_interface_design.filters.Torsion) -> bool torsion(...) from builtins.PyCapsule torsion(*args, **kwargs) Overloaded function.   1. torsion(self : rosetta.protocols.protein_interface_design.filters.Torsion, t : str) -> NoneType   2. torsion(rosetta.protocols.protein_interface_design.filters.Torsion) -> str upper(...) from builtins.PyCapsule upper(*args, **kwargs) Overloaded function.   1. upper(rosetta.protocols.protein_interface_design.filters.Torsion) -> float   2. upper(self : rosetta.protocols.protein_interface_design.filters.Torsion, u : float) -> NoneType Methods inherited from rosetta.protocols.filters.Filter: clear(...) from builtins.PyCapsule clear(rosetta.protocols.filters.Filter) -> NoneType   used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.filters.Filter) -> str get_user_defined_name(...) from builtins.PyCapsule get_user_defined_name(rosetta.protocols.filters.Filter) -> str name(...) from builtins.PyCapsule name(rosetta.protocols.filters.Filter) -> str score(...) from builtins.PyCapsule score(self : rosetta.protocols.filters.Filter, pose : rosetta.core.pose.Pose) -> float set_user_defined_name(...) from builtins.PyCapsule set_user_defined_name(self : rosetta.protocols.filters.Filter, name : str) -> NoneType   class TorsionCreator(rosetta.protocols.filters.FilterCreator)       Method resolution order: TorsionCreator rosetta.protocols.filters.FilterCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.protein_interface_design.filters.TorsionCreator,  : rosetta.protocols.protein_interface_design.filters.TorsionCreator) -> rosetta.protocols.protein_interface_design.filters.TorsionCreator create_filter(...) from builtins.PyCapsule create_filter(rosetta.protocols.protein_interface_design.filters.TorsionCreator) -> rosetta.protocols.filters.Filter keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.protein_interface_design.filters.TorsionCreator) -> str

Functions
		Ca_coords(...) method of builtins.PyCapsule instance Ca_coords(pose : rosetta.core.pose.Pose, positions : rosetta.utility.vector1_unsigned_long) -> rosetta.utility.vector1_numeric_xyzVector_double_t atom_distance(...) method of builtins.PyCapsule instance atom_distance(r1 : rosetta.core.conformation.Residue, a1 : str, r2 : rosetta.core.conformation.Residue, a2 : str) -> float res_rmsd(...) method of builtins.PyCapsule instance res_rmsd(pose_res_for_rmsd : rosetta.utility.vector1_unsigned_long, template_res_for_rmsd : rosetta.utility.vector1_unsigned_long, copy_pose : rosetta.core.pose.Pose, template_pose : rosetta.core.pose.Pose) -> float