rosetta.protocols.pack_daemon
index
(built-in)

Bindings for protocols::pack_daemon namespace

 
Classes
       
builtins.object
DaemonSet
DaemonSetMessage
EntityCorrespondence
EntityFunc
MultistateAggregateFunction
DynamicAggregateFunction
DynamicAggregateFunctionDriver
NPDPropCalculator
NPDPropCalculatorCreator
PackDaemon
QuickRepacker
BasicSimAnnealerRepacker
RotamerSubsetRepacker
DenseIGRepacker
DoubleDenseIGRepacker
FASTER_IG_Repacker
StructureFileNames
TopEntitySet
rosetta.numeric.expression_parser.BinaryExpression(rosetta.numeric.expression_parser.Expression)
PowExpression
VectorFunction2
VMaxBy
VMinBy
rosetta.numeric.expression_parser.Expression(builtins.object)
VectorExpression
IterativeVectorExpression
VariableVectorExpression
rosetta.numeric.expression_parser.ExpressionCreator(rosetta.numeric.expression_parser.ASTVisitor)
EntityFuncExpressionCreator
VectorExpressionCreator
rosetta.numeric.expression_parser.UnaryExpression(rosetta.numeric.expression_parser.Expression)
ExpExpression
InSetExpression
LnExpression
VectorFunction
Mean
VMax
VMin
rosetta.numeric.expression_parser.VariableExpression(rosetta.numeric.expression_parser.Expression)
SurrogateVariableExpression
rosetta.protocols.genetic_algorithm.FitnessFunction(builtins.object)
MultistateFitnessFunction
MPIMultistateFitnessFunction

 
class BasicSimAnnealerRepacker(QuickRepacker)
    
Method resolution order:
BasicSimAnnealerRepacker
QuickRepacker
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(self : handle, pose : rosetta.core.pose.Pose, task : rosetta.core.pack.task.PackerTask, ig : rosetta.core.pack.interaction_graph.FixedBBInteractionGraph, rot_sets : rosetta.core.pack.rotamer_set.RotamerSets) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.BasicSimAnnealerRepacker,  : rosetta.protocols.pack_daemon.BasicSimAnnealerRepacker) -> rosetta.protocols.pack_daemon.BasicSimAnnealerRepacker
repack(...) from builtins.PyCapsule
repack(self : rosetta.protocols.pack_daemon.BasicSimAnnealerRepacker, rot_to_pack : rosetta.utility.vector0_int) -> (rosetta.utility.vector1_int, float)

 
class DaemonSet(builtins.object)
     Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(rosetta.protocols.pack_daemon.DaemonSet) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
activate_daemon_mode(...) from builtins.PyCapsule
activate_daemon_mode(rosetta.protocols.pack_daemon.DaemonSet) -> NoneType
 
receive and respond to remote repacking requests from node 0 until
 a spin-down signal is broadcast.  This function does not return until
 all MPI requests have completed.
add_npd_property_calculator_for_state(...) from builtins.PyCapsule
add_npd_property_calculator_for_state(self : rosetta.protocols.pack_daemon.DaemonSet, daemon_index : int, npd_property : str, npd_index : int) -> NoneType
add_npdpro_calculator_creator(...) from builtins.PyCapsule
add_npdpro_calculator_creator(self : rosetta.protocols.pack_daemon.DaemonSet,  : protocols::pack_daemon::NPDPropCalculatorCreator) -> NoneType
add_pack_daemon(...) from builtins.PyCapsule
add_pack_daemon(self : rosetta.protocols.pack_daemon.DaemonSet, daemon_index : int, pdb_name : str, correspondence_file_name : str, secondary_resfile : str) -> NoneType
 
Each daemon is associated with an index representing its position in
 some master list somewhere.  The DaemonSet is responsible for keeping this index.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.DaemonSet,  : rosetta.protocols.pack_daemon.DaemonSet) -> rosetta.protocols.pack_daemon.DaemonSet
compute_energy_for_assignment(...) from builtins.PyCapsule
compute_energy_for_assignment(self : rosetta.protocols.pack_daemon.DaemonSet, entity : rosetta.protocols.genetic_algorithm.Entity) -> (rosetta.std.list_std_pair_unsigned_long_double_std_allocator_std_pair_unsigned_long_double_t, rosetta.std.list_std_pair_unsigned_long_double_std_allocator_std_pair_unsigned_long_double_t)
 
Compute the state energies and, for those states requiring non-pairwise-decomposable-properties,
 the  non-pairwise decomposable properties as well.  Return them as a pair of lists.
daemons(...) from builtins.PyCapsule
daemons(rosetta.protocols.pack_daemon.DaemonSet) -> rosetta.utility.vector1_std_pair_unsigned_long_std_shared_ptr_const_protocols_pack_daemon_PackDaemon_t
entity_resfile(...) from builtins.PyCapsule
entity_resfile(rosetta.protocols.pack_daemon.DaemonSet) -> rosetta.core.pack.task.ResfileContents
entity_task(...) from builtins.PyCapsule
entity_task(rosetta.protocols.pack_daemon.DaemonSet) -> rosetta.core.pack.task.PackerTask
mark_entity_as_unimportant(...) from builtins.PyCapsule
mark_entity_as_unimportant(self : rosetta.protocols.pack_daemon.DaemonSet,  : rosetta.protocols.genetic_algorithm.Entity) -> NoneType
mark_last_entity_as_important(...) from builtins.PyCapsule
mark_last_entity_as_important(rosetta.protocols.pack_daemon.DaemonSet) -> NoneType
n_npd_properties(...) from builtins.PyCapsule
n_npd_properties(rosetta.protocols.pack_daemon.DaemonSet) -> int
ndaemons(...) from builtins.PyCapsule
ndaemons(rosetta.protocols.pack_daemon.DaemonSet) -> int
set_dlig_nmeg_limit(...) from builtins.PyCapsule
set_dlig_nmeg_limit(self : rosetta.protocols.pack_daemon.DaemonSet, setting : int) -> NoneType
 
restrict the amount of memory spent on storing Rotamer Pair Energies in the
 DoubleLazyInteractionGraph;
set_entity_resfile(...) from builtins.PyCapsule
set_entity_resfile(self : rosetta.protocols.pack_daemon.DaemonSet, resfile : str) -> NoneType
set_include_background_energies(...) from builtins.PyCapsule
set_include_background_energies(self : rosetta.protocols.pack_daemon.DaemonSet, setting : bool) -> NoneType
set_score_function(...) from builtins.PyCapsule
set_score_function(self : rosetta.protocols.pack_daemon.DaemonSet,  : rosetta.core.scoring.ScoreFunction) -> NoneType
set_task_factory(...) from builtins.PyCapsule
set_task_factory(self : rosetta.protocols.pack_daemon.DaemonSet, factory : rosetta.core.pack.task.TaskFactory) -> NoneType
setup_daemons(...) from builtins.PyCapsule
setup_daemons(rosetta.protocols.pack_daemon.DaemonSet) -> NoneType
 
call daemon->setup() on all daemons, which will trigger the
 precomputation of all rotamer pair energies.

 
class DaemonSetMessage(builtins.object)
     Methods defined here:
__eq__(...) from builtins.PyCapsule
__eq__(rosetta.protocols.pack_daemon.DaemonSetMessage, rosetta.protocols.pack_daemon.DaemonSetMessage) -> bool
__hash__(...) from builtins.PyCapsule
__hash__(rosetta.protocols.pack_daemon.DaemonSetMessage) -> int
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(rosetta.protocols.pack_daemon.DaemonSetMessage, int) -> NoneType
 
2. __init__(rosetta.protocols.pack_daemon.DaemonSetMessage, int) -> NoneType
__int__(...) from builtins.PyCapsule
__int__(rosetta.protocols.pack_daemon.DaemonSetMessage) -> int
__ne__(...) from builtins.PyCapsule
__ne__(rosetta.protocols.pack_daemon.DaemonSetMessage, rosetta.protocols.pack_daemon.DaemonSetMessage) -> bool
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
__repr__(...) from builtins.PyCapsule
__repr__(rosetta.protocols.pack_daemon.DaemonSetMessage) -> str

Data and other attributes defined here:
add_daemon = DaemonSetMessage.add_daemon
discard_old_entity = DaemonSetMessage.discard_old_entity
error_message = DaemonSetMessage.error_message
evaluate_entity = DaemonSetMessage.evaluate_entity
geneate_pose_from_old_state = DaemonSetMessage.geneate_pose_from_old_state
keep_rotamer_assignment_for_last_entity = DaemonSetMessage.keep_rotamer_assignment_for_last_entity
n_daemon_set_messages = DaemonSetMessage.n_daemon_set_messages
spin_down = DaemonSetMessage.spin_down
success_message = DaemonSetMessage.success_message

 
class DenseIGRepacker(RotamerSubsetRepacker)
    
Method resolution order:
DenseIGRepacker
RotamerSubsetRepacker
QuickRepacker
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(self : handle, pose : rosetta.core.pose.Pose, task : rosetta.core.pack.task.PackerTask, ig : rosetta.core.pack.interaction_graph.FixedBBInteractionGraph, rotsets : rosetta.core.pack.rotamer_set.RotamerSets) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.DenseIGRepacker,  : rosetta.protocols.pack_daemon.DenseIGRepacker) -> rosetta.protocols.pack_daemon.DenseIGRepacker
create_dense_pdig_from_rot_to_pack(...) from builtins.PyCapsule
create_dense_pdig_from_rot_to_pack(self : rosetta.protocols.pack_daemon.DenseIGRepacker, rot_to_pack : rosetta.utility.vector0_int, rot_subsets : rosetta.core.pack.rotamer_set.RotamerSubsets) -> rosetta.core.pack.interaction_graph.DensePDInteractionGraph
repack(...) from builtins.PyCapsule
repack(self : rosetta.protocols.pack_daemon.DenseIGRepacker, rot_to_pack : rosetta.utility.vector0_int) -> (rosetta.utility.vector1_int, float)
set_MCA(...) from builtins.PyCapsule
set_MCA(rosetta.protocols.pack_daemon.DenseIGRepacker) -> NoneType

Methods inherited from RotamerSubsetRepacker:
create_rotamer_subsets_from_rot_to_pack(...) from builtins.PyCapsule
create_rotamer_subsets_from_rot_to_pack(self : rosetta.protocols.pack_daemon.RotamerSubsetRepacker, rot_to_pack : rosetta.utility.vector0_int) -> rosetta.core.pack.rotamer_set.RotamerSubsets

 
class DoubleDenseIGRepacker(RotamerSubsetRepacker)
    
Method resolution order:
DoubleDenseIGRepacker
RotamerSubsetRepacker
QuickRepacker
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(self : handle, pose : rosetta.core.pose.Pose, task : rosetta.core.pack.task.PackerTask, ig : rosetta.core.pack.interaction_graph.FixedBBInteractionGraph, rotsets : rosetta.core.pack.rotamer_set.RotamerSets) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.DoubleDenseIGRepacker,  : rosetta.protocols.pack_daemon.DoubleDenseIGRepacker) -> rosetta.protocols.pack_daemon.DoubleDenseIGRepacker
create_dense_pdig_from_rot_to_pack(...) from builtins.PyCapsule
create_dense_pdig_from_rot_to_pack(self : rosetta.protocols.pack_daemon.DoubleDenseIGRepacker, rot_to_pack : rosetta.utility.vector0_int, rot_subsets : rosetta.core.pack.rotamer_set.RotamerSubsets) -> rosetta.core.pack.interaction_graph.DoubleDensePDInteractionGraph
repack(...) from builtins.PyCapsule
repack(self : rosetta.protocols.pack_daemon.DoubleDenseIGRepacker, rot_to_pack : rosetta.utility.vector0_int) -> (rosetta.utility.vector1_int, float)

Methods inherited from RotamerSubsetRepacker:
create_rotamer_subsets_from_rot_to_pack(...) from builtins.PyCapsule
create_rotamer_subsets_from_rot_to_pack(self : rosetta.protocols.pack_daemon.RotamerSubsetRepacker, rot_to_pack : rosetta.utility.vector0_int) -> rosetta.core.pack.rotamer_set.RotamerSubsets

 
class DynamicAggregateFunction(MultistateAggregateFunction)
    
Method resolution order:
DynamicAggregateFunction
MultistateAggregateFunction
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(handle) -> NoneType
 
2. __init__(handle, rosetta.protocols.pack_daemon.DynamicAggregateFunction) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
add_file_contents(...) from builtins.PyCapsule
add_file_contents(self : rosetta.protocols.pack_daemon.DynamicAggregateFunction, fname : str, contents : str) -> NoneType
 
Pair a file name with a string -- instead of opening a file
 when asked to read this file, the DAF will use the contents of the file
 as provided.  Useful for testing purposes.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.DynamicAggregateFunction,  : rosetta.protocols.pack_daemon.DynamicAggregateFunction) -> rosetta.protocols.pack_daemon.DynamicAggregateFunction
evaluate(...) from builtins.PyCapsule
evaluate(self : rosetta.protocols.pack_daemon.DynamicAggregateFunction,  : rosetta.utility.vector1_double, npd_properties : rosetta.utility.vector1_double,  : rosetta.protocols.genetic_algorithm.Entity) -> float
file_inputs_for_job(...) from builtins.PyCapsule
file_inputs_for_job(self : rosetta.protocols.pack_daemon.DynamicAggregateFunction, job_index : int) -> rosetta.protocols.pack_daemon.StructureFileNames
function_expression(...) from builtins.PyCapsule
function_expression(self : rosetta.protocols.pack_daemon.DynamicAggregateFunction, function : rosetta.numeric.expression_parser.FunctionToken, args : rosetta.utility.vector1_std_shared_ptr_const_numeric_expression_parser_Expression_t) -> rosetta.numeric.expression_parser.Expression
npd_variable_indices_for_state_begin(...) from builtins.PyCapsule
npd_variable_indices_for_state_begin(self : rosetta.protocols.pack_daemon.DynamicAggregateFunction, state_id : int) -> std::_List_const_iterator<std::pair<unsigned long, std::string> >
npd_variable_indices_for_state_end(...) from builtins.PyCapsule
npd_variable_indices_for_state_end(self : rosetta.protocols.pack_daemon.DynamicAggregateFunction, state_id : int) -> std::_List_const_iterator<std::pair<unsigned long, std::string> >
num_npd_properties(...) from builtins.PyCapsule
num_npd_properties(rosetta.protocols.pack_daemon.DynamicAggregateFunction) -> int
num_npd_properties_for_state(...) from builtins.PyCapsule
num_npd_properties_for_state(self : rosetta.protocols.pack_daemon.DynamicAggregateFunction, state_id : int) -> int
num_states(...) from builtins.PyCapsule
num_states(rosetta.protocols.pack_daemon.DynamicAggregateFunction) -> int
select_relevant_states(...) from builtins.PyCapsule
select_relevant_states(self : rosetta.protocols.pack_daemon.DynamicAggregateFunction, en : rosetta.utility.vector1_double, npd : rosetta.utility.vector1_double,  : rosetta.protocols.genetic_algorithm.Entity) -> rosetta.utility.vector1_unsigned_long
set_num_entity_elements(...) from builtins.PyCapsule
set_num_entity_elements(self : rosetta.protocols.pack_daemon.DynamicAggregateFunction, setting : int) -> NoneType
set_score_function(...) from builtins.PyCapsule
set_score_function(self : rosetta.protocols.pack_daemon.DynamicAggregateFunction, sfxn : rosetta.core.scoring.ScoreFunction) -> NoneType
state_name(...) from builtins.PyCapsule
state_name(self : rosetta.protocols.pack_daemon.DynamicAggregateFunction, state_index : int) -> str
variable_expression(...) from builtins.PyCapsule
variable_expression(self : rosetta.protocols.pack_daemon.DynamicAggregateFunction,  : rosetta.numeric.expression_parser.ArithmeticASTValue) -> rosetta.numeric.expression_parser.Expression

 
class DynamicAggregateFunctionDriver(DynamicAggregateFunction)
    
Method resolution order:
DynamicAggregateFunctionDriver
DynamicAggregateFunction
MultistateAggregateFunction
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(handle) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.DynamicAggregateFunctionDriver,  : rosetta.protocols.pack_daemon.DynamicAggregateFunctionDriver) -> rosetta.protocols.pack_daemon.DynamicAggregateFunctionDriver

Methods inherited from DynamicAggregateFunction:
add_file_contents(...) from builtins.PyCapsule
add_file_contents(self : rosetta.protocols.pack_daemon.DynamicAggregateFunction, fname : str, contents : str) -> NoneType
 
Pair a file name with a string -- instead of opening a file
 when asked to read this file, the DAF will use the contents of the file
 as provided.  Useful for testing purposes.
evaluate(...) from builtins.PyCapsule
evaluate(self : rosetta.protocols.pack_daemon.DynamicAggregateFunction,  : rosetta.utility.vector1_double, npd_properties : rosetta.utility.vector1_double,  : rosetta.protocols.genetic_algorithm.Entity) -> float
file_inputs_for_job(...) from builtins.PyCapsule
file_inputs_for_job(self : rosetta.protocols.pack_daemon.DynamicAggregateFunction, job_index : int) -> rosetta.protocols.pack_daemon.StructureFileNames
function_expression(...) from builtins.PyCapsule
function_expression(self : rosetta.protocols.pack_daemon.DynamicAggregateFunction, function : rosetta.numeric.expression_parser.FunctionToken, args : rosetta.utility.vector1_std_shared_ptr_const_numeric_expression_parser_Expression_t) -> rosetta.numeric.expression_parser.Expression
npd_variable_indices_for_state_begin(...) from builtins.PyCapsule
npd_variable_indices_for_state_begin(self : rosetta.protocols.pack_daemon.DynamicAggregateFunction, state_id : int) -> std::_List_const_iterator<std::pair<unsigned long, std::string> >
npd_variable_indices_for_state_end(...) from builtins.PyCapsule
npd_variable_indices_for_state_end(self : rosetta.protocols.pack_daemon.DynamicAggregateFunction, state_id : int) -> std::_List_const_iterator<std::pair<unsigned long, std::string> >
num_npd_properties(...) from builtins.PyCapsule
num_npd_properties(rosetta.protocols.pack_daemon.DynamicAggregateFunction) -> int
num_npd_properties_for_state(...) from builtins.PyCapsule
num_npd_properties_for_state(self : rosetta.protocols.pack_daemon.DynamicAggregateFunction, state_id : int) -> int
num_states(...) from builtins.PyCapsule
num_states(rosetta.protocols.pack_daemon.DynamicAggregateFunction) -> int
select_relevant_states(...) from builtins.PyCapsule
select_relevant_states(self : rosetta.protocols.pack_daemon.DynamicAggregateFunction, en : rosetta.utility.vector1_double, npd : rosetta.utility.vector1_double,  : rosetta.protocols.genetic_algorithm.Entity) -> rosetta.utility.vector1_unsigned_long
set_num_entity_elements(...) from builtins.PyCapsule
set_num_entity_elements(self : rosetta.protocols.pack_daemon.DynamicAggregateFunction, setting : int) -> NoneType
set_score_function(...) from builtins.PyCapsule
set_score_function(self : rosetta.protocols.pack_daemon.DynamicAggregateFunction, sfxn : rosetta.core.scoring.ScoreFunction) -> NoneType
state_name(...) from builtins.PyCapsule
state_name(self : rosetta.protocols.pack_daemon.DynamicAggregateFunction, state_index : int) -> str
variable_expression(...) from builtins.PyCapsule
variable_expression(self : rosetta.protocols.pack_daemon.DynamicAggregateFunction,  : rosetta.numeric.expression_parser.ArithmeticASTValue) -> rosetta.numeric.expression_parser.Expression

 
class EntityCorrespondence(builtins.object)
     Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(rosetta.protocols.pack_daemon.EntityCorrespondence) -> NoneType
 
2. __init__(self : rosetta.protocols.pack_daemon.EntityCorrespondence,  : rosetta.protocols.pack_daemon.EntityCorrespondence) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
add_resid_to_entity_list(...) from builtins.PyCapsule
add_resid_to_entity_list(self : rosetta.protocols.pack_daemon.EntityCorrespondence, EntityID : int, ResID : int) -> NoneType
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.EntityCorrespondence,  : rosetta.protocols.pack_daemon.EntityCorrespondence) -> rosetta.protocols.pack_daemon.EntityCorrespondence
entity_for_residue(...) from builtins.PyCapsule
entity_for_residue(self : rosetta.protocols.pack_daemon.EntityCorrespondence, resid : int) -> int
n_residues_for_entity(...) from builtins.PyCapsule
n_residues_for_entity(self : rosetta.protocols.pack_daemon.EntityCorrespondence, entity_id : int) -> int
num_entities(...) from builtins.PyCapsule
num_entities(rosetta.protocols.pack_daemon.EntityCorrespondence) -> int
num_residues(...) from builtins.PyCapsule
num_residues(rosetta.protocols.pack_daemon.EntityCorrespondence) -> int
residues_for_entity_begin(...) from builtins.PyCapsule
residues_for_entity_begin(self : rosetta.protocols.pack_daemon.EntityCorrespondence, entity_id : int) -> std::_List_const_iterator<unsigned long>
residues_for_entity_end(...) from builtins.PyCapsule
residues_for_entity_end(self : rosetta.protocols.pack_daemon.EntityCorrespondence, entity_id : int) -> std::_List_const_iterator<unsigned long>
set_num_entities(...) from builtins.PyCapsule
set_num_entities(self : rosetta.protocols.pack_daemon.EntityCorrespondence, num_entities : int) -> NoneType
set_pose(...) from builtins.PyCapsule
set_pose(self : rosetta.protocols.pack_daemon.EntityCorrespondence, pose : rosetta.core.pose.Pose) -> NoneType

 
class EntityFunc(builtins.object)
     Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(rosetta.protocols.pack_daemon.EntityFunc) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.EntityFunc,  : rosetta.protocols.pack_daemon.EntityFunc) -> rosetta.protocols.pack_daemon.EntityFunc
evaluate(...) from builtins.PyCapsule
evaluate(*args, **kwargs)
Overloaded function.
 
1. evaluate(self : rosetta.protocols.pack_daemon.EntityFunc, entity : rosetta.protocols.genetic_algorithm.Entity) -> float
 
2. evaluate(self : rosetta.protocols.pack_daemon.EntityFunc, entity : rosetta.protocols.genetic_algorithm.Entity, verbose : bool) -> float
function_expression(...) from builtins.PyCapsule
function_expression(self : rosetta.protocols.pack_daemon.EntityFunc, function : rosetta.numeric.expression_parser.FunctionToken, args : rosetta.utility.vector1_std_shared_ptr_const_numeric_expression_parser_Expression_t) -> rosetta.numeric.expression_parser.Expression
set_num_entity_elements(...) from builtins.PyCapsule
set_num_entity_elements(self : rosetta.protocols.pack_daemon.EntityFunc, num_ee : int) -> NoneType
variable_expression(...) from builtins.PyCapsule
variable_expression(self : rosetta.protocols.pack_daemon.EntityFunc,  : rosetta.numeric.expression_parser.ArithmeticASTValue) -> rosetta.numeric.expression_parser.Expression

 
class EntityFuncExpressionCreator(rosetta.numeric.expression_parser.ExpressionCreator)
    
Method resolution order:
EntityFuncExpressionCreator
rosetta.numeric.expression_parser.ExpressionCreator
rosetta.numeric.expression_parser.ASTVisitor
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(self : handle, owner : protocols::pack_daemon::EntityFunc) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
handle_function_expression(...) from builtins.PyCapsule
handle_function_expression(self : rosetta.protocols.pack_daemon.EntityFuncExpressionCreator, function : rosetta.numeric.expression_parser.FunctionToken, args : rosetta.utility.vector1_std_shared_ptr_const_numeric_expression_parser_Expression_t) -> rosetta.numeric.expression_parser.Expression
handle_variable_expression(...) from builtins.PyCapsule
handle_variable_expression(self : rosetta.protocols.pack_daemon.EntityFuncExpressionCreator,  : rosetta.numeric.expression_parser.ArithmeticASTValue) -> rosetta.numeric.expression_parser.Expression

Methods inherited from rosetta.numeric.expression_parser.ExpressionCreator:
assign(...) from builtins.PyCapsule
assign(self : rosetta.numeric.expression_parser.ExpressionCreator,  : rosetta.numeric.expression_parser.ExpressionCreator) -> rosetta.numeric.expression_parser.ExpressionCreator
create_expression_tree(...) from builtins.PyCapsule
create_expression_tree(self : rosetta.numeric.expression_parser.ExpressionCreator,  : rosetta.numeric.expression_parser.ArithmeticASTExpression) -> numeric::expression_parser::Expression
visit(...) from builtins.PyCapsule
visit(*args, **kwargs)
Overloaded function.
 
1. visit(self : rosetta.numeric.expression_parser.ExpressionCreator,  : rosetta.numeric.expression_parser.ArithmeticASTExpression) -> NoneType
 
2. visit(self : rosetta.numeric.expression_parser.ExpressionCreator,  : rosetta.numeric.expression_parser.ArithmeticASTFunction) -> NoneType
 
3. visit(self : rosetta.numeric.expression_parser.ExpressionCreator,  : rosetta.numeric.expression_parser.ArithmeticASTTerm) -> NoneType
 
4. visit(self : rosetta.numeric.expression_parser.ExpressionCreator,  : rosetta.numeric.expression_parser.ArithmeticASTFactor) -> NoneType
 
5. visit(self : rosetta.numeric.expression_parser.ExpressionCreator,  : rosetta.numeric.expression_parser.ArithmeticASTValue) -> NoneType
 
6. visit(self : rosetta.numeric.expression_parser.ExpressionCreator,  : rosetta.numeric.expression_parser.ArithmeticASTRestTerm) -> NoneType
 
7. visit(self : rosetta.numeric.expression_parser.ExpressionCreator,  : rosetta.numeric.expression_parser.ArithmeticASTRestExpression) -> NoneType
 
8. visit(self : rosetta.numeric.expression_parser.ExpressionCreator,  : rosetta.numeric.expression_parser.ArithmeticASTNode) -> NoneType

 
class ExpExpression(rosetta.numeric.expression_parser.UnaryExpression)
    
Method resolution order:
ExpExpression
rosetta.numeric.expression_parser.UnaryExpression
rosetta.numeric.expression_parser.Expression
builtins.object

Methods defined here:
__call__(...) from builtins.PyCapsule
__call__(rosetta.protocols.pack_daemon.ExpExpression) -> float
__init__(...) from builtins.PyCapsule
__init__(self : handle, ex : rosetta.numeric.expression_parser.Expression) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.ExpExpression,  : rosetta.protocols.pack_daemon.ExpExpression) -> rosetta.protocols.pack_daemon.ExpExpression
differentiate(...) from builtins.PyCapsule
differentiate(self : rosetta.protocols.pack_daemon.ExpExpression, varname : str) -> rosetta.numeric.expression_parser.Expression

Methods inherited from rosetta.numeric.expression_parser.UnaryExpression:
active_variables(...) from builtins.PyCapsule
active_variables(rosetta.numeric.expression_parser.UnaryExpression) -> rosetta.std.list_std_string_std_allocator_std_string_t
ex(...) from builtins.PyCapsule
ex(rosetta.numeric.expression_parser.UnaryExpression) -> rosetta.numeric.expression_parser.Expression
set_expression(...) from builtins.PyCapsule
set_expression(self : rosetta.numeric.expression_parser.UnaryExpression, ex : rosetta.numeric.expression_parser.Expression) -> NoneType

 
class FASTER_IG_Repacker(RotamerSubsetRepacker)
    
Method resolution order:
FASTER_IG_Repacker
RotamerSubsetRepacker
QuickRepacker
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(self : handle, pose : rosetta.core.pose.Pose, task : rosetta.core.pack.task.PackerTask, ig : rosetta.core.pack.interaction_graph.FixedBBInteractionGraph, rotsets : rosetta.core.pack.rotamer_set.RotamerSets) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.FASTER_IG_Repacker,  : rosetta.protocols.pack_daemon.FASTER_IG_Repacker) -> rosetta.protocols.pack_daemon.FASTER_IG_Repacker
create_faster_ig_from_rot_to_pack(...) from builtins.PyCapsule
create_faster_ig_from_rot_to_pack(self : rosetta.protocols.pack_daemon.FASTER_IG_Repacker, rot_to_pack : rosetta.utility.vector0_int, rot_subsets : rosetta.core.pack.rotamer_set.RotamerSubsets) -> rosetta.core.pack.interaction_graph.FASTERInteractionGraph
repack(...) from builtins.PyCapsule
repack(self : rosetta.protocols.pack_daemon.FASTER_IG_Repacker, rot_to_pack : rosetta.utility.vector0_int) -> (rosetta.utility.vector1_int, float)
set_ciBR_only(...) from builtins.PyCapsule
set_ciBR_only(self : rosetta.protocols.pack_daemon.FASTER_IG_Repacker, setting : bool) -> NoneType
set_num_sa(...) from builtins.PyCapsule
set_num_sa(self : rosetta.protocols.pack_daemon.FASTER_IG_Repacker, setting : int) -> NoneType
set_sa_scale(...) from builtins.PyCapsule
set_sa_scale(self : rosetta.protocols.pack_daemon.FASTER_IG_Repacker, setting : float) -> NoneType

Methods inherited from RotamerSubsetRepacker:
create_rotamer_subsets_from_rot_to_pack(...) from builtins.PyCapsule
create_rotamer_subsets_from_rot_to_pack(self : rosetta.protocols.pack_daemon.RotamerSubsetRepacker, rot_to_pack : rosetta.utility.vector0_int) -> rosetta.core.pack.rotamer_set.RotamerSubsets

 
class InSetExpression(rosetta.numeric.expression_parser.UnaryExpression)
    Returns "true" if the expression ex evaluates to one
of a set of indicated values.
 
 
Method resolution order:
InSetExpression
rosetta.numeric.expression_parser.UnaryExpression
rosetta.numeric.expression_parser.Expression
builtins.object

Methods defined here:
__call__(...) from builtins.PyCapsule
__call__(rosetta.protocols.pack_daemon.InSetExpression) -> float
__init__(...) from builtins.PyCapsule
__init__(self : handle, ex : rosetta.numeric.expression_parser.Expression) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.InSetExpression,  : rosetta.protocols.pack_daemon.InSetExpression) -> rosetta.protocols.pack_daemon.InSetExpression
differentiate(...) from builtins.PyCapsule
differentiate(self : rosetta.protocols.pack_daemon.InSetExpression, varname : str) -> rosetta.numeric.expression_parser.Expression
value_set(...) from builtins.PyCapsule
value_set(self : rosetta.protocols.pack_daemon.InSetExpression, values : rosetta.utility.vector1_double) -> NoneType

Methods inherited from rosetta.numeric.expression_parser.UnaryExpression:
active_variables(...) from builtins.PyCapsule
active_variables(rosetta.numeric.expression_parser.UnaryExpression) -> rosetta.std.list_std_string_std_allocator_std_string_t
ex(...) from builtins.PyCapsule
ex(rosetta.numeric.expression_parser.UnaryExpression) -> rosetta.numeric.expression_parser.Expression
set_expression(...) from builtins.PyCapsule
set_expression(self : rosetta.numeric.expression_parser.UnaryExpression, ex : rosetta.numeric.expression_parser.Expression) -> NoneType

 
class IterativeVectorExpression(VectorExpression)
    
Method resolution order:
IterativeVectorExpression
VectorExpression
rosetta.numeric.expression_parser.Expression
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(self : handle, name : str) -> NoneType
 
2. __init__(handle, rosetta.protocols.pack_daemon.IterativeVectorExpression) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
active_variables(...) from builtins.PyCapsule
active_variables(rosetta.protocols.pack_daemon.IterativeVectorExpression) -> rosetta.std.list_std_string_std_allocator_std_string_t
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.IterativeVectorExpression,  : rosetta.protocols.pack_daemon.IterativeVectorExpression) -> rosetta.protocols.pack_daemon.IterativeVectorExpression
initialize(...) from builtins.PyCapsule
initialize(self : rosetta.protocols.pack_daemon.IterativeVectorExpression, vector_varnames : rosetta.std.map_std_string_std_shared_ptr_const_protocols_pack_daemon_VectorExpression_t, expresion_ast : rosetta.numeric.expression_parser.ArithmeticASTExpression, expression_creator : protocols::pack_daemon::VectorExpressionCreator) -> NoneType
local_variable(...) from builtins.PyCapsule
local_variable(self : rosetta.protocols.pack_daemon.IterativeVectorExpression, varname : str) -> rosetta.numeric.expression_parser.VariableExpression
size(...) from builtins.PyCapsule
size(rosetta.protocols.pack_daemon.IterativeVectorExpression) -> int
vector_values(...) from builtins.PyCapsule
vector_values(rosetta.protocols.pack_daemon.IterativeVectorExpression) -> rosetta.utility.vector1_double

Methods inherited from VectorExpression:
__call__(...) from builtins.PyCapsule
__call__(rosetta.protocols.pack_daemon.VectorExpression) -> float
 
DO NOT CALL THIS FUNCTION.  Vector expressions return
 vectors of values instead of a singular value.
differentiate(...) from builtins.PyCapsule
differentiate(self : rosetta.protocols.pack_daemon.VectorExpression, varname : str) -> rosetta.numeric.expression_parser.Expression
 
DO NOT CALL THIS FUNCTION.  Vector expressions cannot
 be differentiated.
name(...) from builtins.PyCapsule
name(rosetta.protocols.pack_daemon.VectorExpression) -> str

 
class LnExpression(rosetta.numeric.expression_parser.UnaryExpression)
    
Method resolution order:
LnExpression
rosetta.numeric.expression_parser.UnaryExpression
rosetta.numeric.expression_parser.Expression
builtins.object

Methods defined here:
__call__(...) from builtins.PyCapsule
__call__(rosetta.protocols.pack_daemon.LnExpression) -> float
__init__(...) from builtins.PyCapsule
__init__(self : handle, ex : rosetta.numeric.expression_parser.Expression) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.LnExpression,  : rosetta.protocols.pack_daemon.LnExpression) -> rosetta.protocols.pack_daemon.LnExpression
differentiate(...) from builtins.PyCapsule
differentiate(self : rosetta.protocols.pack_daemon.LnExpression, varname : str) -> rosetta.numeric.expression_parser.Expression

Methods inherited from rosetta.numeric.expression_parser.UnaryExpression:
active_variables(...) from builtins.PyCapsule
active_variables(rosetta.numeric.expression_parser.UnaryExpression) -> rosetta.std.list_std_string_std_allocator_std_string_t
ex(...) from builtins.PyCapsule
ex(rosetta.numeric.expression_parser.UnaryExpression) -> rosetta.numeric.expression_parser.Expression
set_expression(...) from builtins.PyCapsule
set_expression(self : rosetta.numeric.expression_parser.UnaryExpression, ex : rosetta.numeric.expression_parser.Expression) -> NoneType

 
class MPIMultistateFitnessFunction(MultistateFitnessFunction)
    
Method resolution order:
MPIMultistateFitnessFunction
MultistateFitnessFunction
rosetta.protocols.genetic_algorithm.FitnessFunction
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(handle) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.MPIMultistateFitnessFunction,  : rosetta.protocols.pack_daemon.MPIMultistateFitnessFunction) -> rosetta.protocols.pack_daemon.MPIMultistateFitnessFunction
send_spin_down_signal(...) from builtins.PyCapsule
send_spin_down_signal(rosetta.protocols.pack_daemon.MPIMultistateFitnessFunction) -> NoneType
 
Spin down the other nodes.  No entity evaluation may follow
 the spin down call
set_num_npd_properties(...) from builtins.PyCapsule
set_num_npd_properties(self : rosetta.protocols.pack_daemon.MPIMultistateFitnessFunction, n_npd_properties : int) -> NoneType
 
Inform this MPIMultistateFitnessFunction how many non-pairwise decomposable
 properties will be computed for all states
set_num_pack_daemons(...) from builtins.PyCapsule
set_num_pack_daemons(self : rosetta.protocols.pack_daemon.MPIMultistateFitnessFunction, n_daemons : int) -> NoneType
 
Inform this MPIMultistateFitnessFunction how many PackDaemons
 are running on all nodes (counting this one) which it may be unaware of.

Methods inherited from MultistateFitnessFunction:
aggregate_function(...) from builtins.PyCapsule
aggregate_function(*args, **kwargs)
Overloaded function.
 
1. aggregate_function(self : rosetta.protocols.pack_daemon.MultistateFitnessFunction, func : rosetta.protocols.pack_daemon.MultistateAggregateFunction) -> NoneType
 
2. aggregate_function(rosetta.protocols.pack_daemon.MultistateFitnessFunction) -> rosetta.protocols.pack_daemon.MultistateAggregateFunction
clear_history(...) from builtins.PyCapsule
clear_history(rosetta.protocols.pack_daemon.MultistateFitnessFunction) -> NoneType
daemon_set(...) from builtins.PyCapsule
daemon_set(*args, **kwargs)
Overloaded function.
 
1. daemon_set(self : rosetta.protocols.pack_daemon.MultistateFitnessFunction, ds : protocols::pack_daemon::DaemonSet) -> NoneType
 
2. daemon_set(rosetta.protocols.pack_daemon.MultistateFitnessFunction) -> protocols::pack_daemon::DaemonSet
evaluate(...) from builtins.PyCapsule
evaluate(self : rosetta.protocols.pack_daemon.MultistateFitnessFunction, entity : rosetta.protocols.genetic_algorithm.Entity) -> float
npd_properties(...) from builtins.PyCapsule
npd_properties(rosetta.protocols.pack_daemon.MultistateFitnessFunction) -> rosetta.utility.vector1_double
set_history_size(...) from builtins.PyCapsule
set_history_size(self : rosetta.protocols.pack_daemon.MultistateFitnessFunction, history_size : int) -> NoneType
state_energies(...) from builtins.PyCapsule
state_energies(rosetta.protocols.pack_daemon.MultistateFitnessFunction) -> rosetta.utility.vector1_double

 
class Mean(VectorFunction)
    
Method resolution order:
Mean
VectorFunction
rosetta.numeric.expression_parser.UnaryExpression
rosetta.numeric.expression_parser.Expression
builtins.object

Methods defined here:
__call__(...) from builtins.PyCapsule
__call__(rosetta.protocols.pack_daemon.Mean) -> float
__init__(...) from builtins.PyCapsule
__init__(self : handle, ex : rosetta.protocols.pack_daemon.VectorExpression) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
active_variables(...) from builtins.PyCapsule
active_variables(rosetta.protocols.pack_daemon.Mean) -> rosetta.std.list_std_string_std_allocator_std_string_t
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.Mean,  : rosetta.protocols.pack_daemon.Mean) -> rosetta.protocols.pack_daemon.Mean
differentiate(...) from builtins.PyCapsule
differentiate(self : rosetta.protocols.pack_daemon.Mean, varname : str) -> rosetta.numeric.expression_parser.Expression

Methods inherited from rosetta.numeric.expression_parser.UnaryExpression:
ex(...) from builtins.PyCapsule
ex(rosetta.numeric.expression_parser.UnaryExpression) -> rosetta.numeric.expression_parser.Expression
set_expression(...) from builtins.PyCapsule
set_expression(self : rosetta.numeric.expression_parser.UnaryExpression, ex : rosetta.numeric.expression_parser.Expression) -> NoneType

 
class MultistateAggregateFunction(builtins.object)
     Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(rosetta.protocols.pack_daemon.MultistateAggregateFunction) -> NoneType
 
2. __init__(rosetta.protocols.pack_daemon.MultistateAggregateFunction, rosetta.protocols.pack_daemon.MultistateAggregateFunction) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.MultistateAggregateFunction,  : rosetta.protocols.pack_daemon.MultistateAggregateFunction) -> rosetta.protocols.pack_daemon.MultistateAggregateFunction
evaluate(...) from builtins.PyCapsule
evaluate(self : rosetta.protocols.pack_daemon.MultistateAggregateFunction,  : rosetta.utility.vector1_double,  : rosetta.utility.vector1_double,  : rosetta.protocols.genetic_algorithm.Entity) -> float
select_relevant_states(...) from builtins.PyCapsule
select_relevant_states(self : rosetta.protocols.pack_daemon.MultistateAggregateFunction,  : rosetta.utility.vector1_double,  : rosetta.utility.vector1_double,  : rosetta.protocols.genetic_algorithm.Entity) -> rosetta.utility.vector1_unsigned_long

 
class MultistateFitnessFunction(rosetta.protocols.genetic_algorithm.FitnessFunction)
    
Method resolution order:
MultistateFitnessFunction
rosetta.protocols.genetic_algorithm.FitnessFunction
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(handle) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
aggregate_function(...) from builtins.PyCapsule
aggregate_function(*args, **kwargs)
Overloaded function.
 
1. aggregate_function(self : rosetta.protocols.pack_daemon.MultistateFitnessFunction, func : rosetta.protocols.pack_daemon.MultistateAggregateFunction) -> NoneType
 
2. aggregate_function(rosetta.protocols.pack_daemon.MultistateFitnessFunction) -> rosetta.protocols.pack_daemon.MultistateAggregateFunction
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.MultistateFitnessFunction,  : rosetta.protocols.pack_daemon.MultistateFitnessFunction) -> rosetta.protocols.pack_daemon.MultistateFitnessFunction
clear_history(...) from builtins.PyCapsule
clear_history(rosetta.protocols.pack_daemon.MultistateFitnessFunction) -> NoneType
daemon_set(...) from builtins.PyCapsule
daemon_set(*args, **kwargs)
Overloaded function.
 
1. daemon_set(self : rosetta.protocols.pack_daemon.MultistateFitnessFunction, ds : protocols::pack_daemon::DaemonSet) -> NoneType
 
2. daemon_set(rosetta.protocols.pack_daemon.MultistateFitnessFunction) -> protocols::pack_daemon::DaemonSet
evaluate(...) from builtins.PyCapsule
evaluate(self : rosetta.protocols.pack_daemon.MultistateFitnessFunction, entity : rosetta.protocols.genetic_algorithm.Entity) -> float
npd_properties(...) from builtins.PyCapsule
npd_properties(rosetta.protocols.pack_daemon.MultistateFitnessFunction) -> rosetta.utility.vector1_double
set_history_size(...) from builtins.PyCapsule
set_history_size(self : rosetta.protocols.pack_daemon.MultistateFitnessFunction, history_size : int) -> NoneType
state_energies(...) from builtins.PyCapsule
state_energies(rosetta.protocols.pack_daemon.MultistateFitnessFunction) -> rosetta.utility.vector1_double

 
class NPDPropCalculator(builtins.object)
    /////////////////////////////////////////////
//////      NPDPropCalculator      //////////
/////////////////////////////////////////////
 
  Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(rosetta.protocols.pack_daemon.NPDPropCalculator) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.NPDPropCalculator,  : rosetta.protocols.pack_daemon.NPDPropCalculator) -> rosetta.protocols.pack_daemon.NPDPropCalculator
calculate(...) from builtins.PyCapsule
calculate(self : rosetta.protocols.pack_daemon.NPDPropCalculator, p : rosetta.core.pose.Pose) -> float
setup(...) from builtins.PyCapsule
setup(self : rosetta.protocols.pack_daemon.NPDPropCalculator, pose : rosetta.core.pose.Pose, task : rosetta.core.pack.task.PackerTask) -> NoneType

 
class NPDPropCalculatorCreator(builtins.object)
     Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(rosetta.protocols.pack_daemon.NPDPropCalculatorCreator) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.NPDPropCalculatorCreator,  : rosetta.protocols.pack_daemon.NPDPropCalculatorCreator) -> rosetta.protocols.pack_daemon.NPDPropCalculatorCreator
calculator_name(...) from builtins.PyCapsule
calculator_name(rosetta.protocols.pack_daemon.NPDPropCalculatorCreator) -> str
new_calculator(...) from builtins.PyCapsule
new_calculator(rosetta.protocols.pack_daemon.NPDPropCalculatorCreator) -> rosetta.protocols.pack_daemon.NPDPropCalculator

 
class PackDaemon(builtins.object)
     Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(rosetta.protocols.pack_daemon.PackDaemon) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.PackDaemon,  : rosetta.protocols.pack_daemon.PackDaemon) -> rosetta.protocols.pack_daemon.PackDaemon
assign_last_rotamers_to_pose(...) from builtins.PyCapsule
assign_last_rotamers_to_pose(self : rosetta.protocols.pack_daemon.PackDaemon, pose : rosetta.core.pose.Pose) -> NoneType
best_assignment(...) from builtins.PyCapsule
best_assignment(rosetta.protocols.pack_daemon.PackDaemon) -> (rosetta.utility.vector1_int, float)
compute_energy_for_assignment(...) from builtins.PyCapsule
compute_energy_for_assignment(self : rosetta.protocols.pack_daemon.PackDaemon,  : rosetta.protocols.genetic_algorithm.Entity) -> float
 
Repack the structure with the Entity
 This function proceeds in two steps: it creates a list of
 rotamer indices to be used during the repacking, and then
 it uses that list to repack the rotamers.  The first step
 is taken care of by the select_rotamer_subset method.
correspondence(...) from builtins.PyCapsule
correspondence(rosetta.protocols.pack_daemon.PackDaemon) -> rosetta.protocols.pack_daemon.EntityCorrespondence
ig(...) from builtins.PyCapsule
ig(rosetta.protocols.pack_daemon.PackDaemon) -> rosetta.core.pack.interaction_graph.FixedBBInteractionGraph
last_assignment(...) from builtins.PyCapsule
last_assignment(rosetta.protocols.pack_daemon.PackDaemon) -> (rosetta.utility.vector1_int, float)
mark_entity_as_unimportant(...) from builtins.PyCapsule
mark_entity_as_unimportant(self : rosetta.protocols.pack_daemon.PackDaemon,  : rosetta.protocols.genetic_algorithm.Entity) -> NoneType
mark_last_entity_as_important(...) from builtins.PyCapsule
mark_last_entity_as_important(rosetta.protocols.pack_daemon.PackDaemon) -> NoneType
pose(...) from builtins.PyCapsule
pose(rosetta.protocols.pack_daemon.PackDaemon) -> rosetta.core.pose.Pose
print_entity_history(...) from builtins.PyCapsule
print_entity_history(rosetta.protocols.pack_daemon.PackDaemon) -> NoneType
recreate_pose_for_entity(...) from builtins.PyCapsule
recreate_pose_for_entity(self : rosetta.protocols.pack_daemon.PackDaemon,  : rosetta.protocols.genetic_algorithm.Entity) -> rosetta.core.pose.Pose
rot_sets(...) from builtins.PyCapsule
rot_sets(rosetta.protocols.pack_daemon.PackDaemon) -> rosetta.core.pack.rotamer_set.RotamerSets
score_function(...) from builtins.PyCapsule
score_function(rosetta.protocols.pack_daemon.PackDaemon) -> rosetta.core.scoring.ScoreFunction
select_rotamer_subset(...) from builtins.PyCapsule
select_rotamer_subset(self : rosetta.protocols.pack_daemon.PackDaemon,  : rosetta.protocols.genetic_algorithm.Entity) -> rosetta.utility.vector0_int
set_dlig_nmeg_limit(...) from builtins.PyCapsule
set_dlig_nmeg_limit(self : rosetta.protocols.pack_daemon.PackDaemon, setting : int) -> NoneType
 
restrict the amount of memory spent on storing Rotamer Pair Energies in the
 DoubleLazyInteractionGraph;
set_entity_correspondence(...) from builtins.PyCapsule
set_entity_correspondence(self : rosetta.protocols.pack_daemon.PackDaemon,  : rosetta.protocols.pack_daemon.EntityCorrespondence) -> NoneType
set_include_background_energies(...) from builtins.PyCapsule
set_include_background_energies(self : rosetta.protocols.pack_daemon.PackDaemon, setting : bool) -> NoneType
set_pose_and_task(...) from builtins.PyCapsule
set_pose_and_task(self : rosetta.protocols.pack_daemon.PackDaemon,  : rosetta.core.pose.Pose,  : rosetta.core.pack.task.PackerTask) -> NoneType
set_score_function(...) from builtins.PyCapsule
set_score_function(self : rosetta.protocols.pack_daemon.PackDaemon,  : rosetta.core.scoring.ScoreFunction) -> NoneType
setup(...) from builtins.PyCapsule
setup(rosetta.protocols.pack_daemon.PackDaemon) -> NoneType
task(...) from builtins.PyCapsule
task(rosetta.protocols.pack_daemon.PackDaemon) -> rosetta.core.pack.task.PackerTask

 
class PowExpression(rosetta.numeric.expression_parser.BinaryExpression)
    
Method resolution order:
PowExpression
rosetta.numeric.expression_parser.BinaryExpression
rosetta.numeric.expression_parser.Expression
builtins.object

Methods defined here:
__call__(...) from builtins.PyCapsule
__call__(rosetta.protocols.pack_daemon.PowExpression) -> float
__init__(...) from builtins.PyCapsule
__init__(self : handle, base : rosetta.numeric.expression_parser.Expression, exponent : rosetta.numeric.expression_parser.Expression) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.PowExpression,  : rosetta.protocols.pack_daemon.PowExpression) -> rosetta.protocols.pack_daemon.PowExpression
differentiate(...) from builtins.PyCapsule
differentiate(self : rosetta.protocols.pack_daemon.PowExpression, varname : str) -> rosetta.numeric.expression_parser.Expression

Methods inherited from rosetta.numeric.expression_parser.BinaryExpression:
active_variables(...) from builtins.PyCapsule
active_variables(rosetta.numeric.expression_parser.BinaryExpression) -> rosetta.std.list_std_string_std_allocator_std_string_t
e1(...) from builtins.PyCapsule
e1(rosetta.numeric.expression_parser.BinaryExpression) -> rosetta.numeric.expression_parser.Expression
e2(...) from builtins.PyCapsule
e2(rosetta.numeric.expression_parser.BinaryExpression) -> rosetta.numeric.expression_parser.Expression
set_first_expression(...) from builtins.PyCapsule
set_first_expression(self : rosetta.numeric.expression_parser.BinaryExpression, e1 : rosetta.numeric.expression_parser.Expression) -> NoneType
set_second_expression(...) from builtins.PyCapsule
set_second_expression(self : rosetta.numeric.expression_parser.BinaryExpression, e2 : rosetta.numeric.expression_parser.Expression) -> NoneType

 
class QuickRepacker(builtins.object)
    /////////////////////////////////////////////
//////       QuickRepacker         //////////
/////////////////////////////////////////////
 
  Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(self : rosetta.protocols.pack_daemon.QuickRepacker, pose : rosetta.core.pose.Pose, task : rosetta.core.pack.task.PackerTask, ig : rosetta.core.pack.interaction_graph.FixedBBInteractionGraph, rot_sets : rosetta.core.pack.rotamer_set.RotamerSets) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.QuickRepacker,  : rosetta.protocols.pack_daemon.QuickRepacker) -> rosetta.protocols.pack_daemon.QuickRepacker
repack(...) from builtins.PyCapsule
repack(self : rosetta.protocols.pack_daemon.QuickRepacker, rot_to_pack : rosetta.utility.vector0_int) -> (rosetta.utility.vector1_int, float)

 
class RotamerSubsetRepacker(QuickRepacker)
    
Method resolution order:
RotamerSubsetRepacker
QuickRepacker
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(self : rosetta.protocols.pack_daemon.RotamerSubsetRepacker, pose : rosetta.core.pose.Pose, task : rosetta.core.pack.task.PackerTask, ig : rosetta.core.pack.interaction_graph.FixedBBInteractionGraph, rot_sets : rosetta.core.pack.rotamer_set.RotamerSets) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.RotamerSubsetRepacker,  : rosetta.protocols.pack_daemon.RotamerSubsetRepacker) -> rosetta.protocols.pack_daemon.RotamerSubsetRepacker
create_rotamer_subsets_from_rot_to_pack(...) from builtins.PyCapsule
create_rotamer_subsets_from_rot_to_pack(self : rosetta.protocols.pack_daemon.RotamerSubsetRepacker, rot_to_pack : rosetta.utility.vector0_int) -> rosetta.core.pack.rotamer_set.RotamerSubsets

Methods inherited from QuickRepacker:
repack(...) from builtins.PyCapsule
repack(self : rosetta.protocols.pack_daemon.QuickRepacker, rot_to_pack : rosetta.utility.vector0_int) -> (rosetta.utility.vector1_int, float)

 
class StructureFileNames(builtins.object)
     Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(rosetta.protocols.pack_daemon.StructureFileNames) -> NoneType
 
2. __init__(self : rosetta.protocols.pack_daemon.StructureFileNames,  : rosetta.protocols.pack_daemon.StructureFileNames) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.StructureFileNames,  : rosetta.protocols.pack_daemon.StructureFileNames) -> rosetta.protocols.pack_daemon.StructureFileNames

Data descriptors defined here:
correspondence_file_name_
pdb_name_
resfile_name_

 
class SurrogateVariableExpression(rosetta.numeric.expression_parser.VariableExpression)
    Stores the result of the surragate expression as if this
expression were a variable, but defers to the root expression for
questions of deriviatives and which variables are active
(this is not a real variable).
 
 
Method resolution order:
SurrogateVariableExpression
rosetta.numeric.expression_parser.VariableExpression
rosetta.numeric.expression_parser.Expression
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(self : handle,  : str) -> NoneType
 
2. __init__(self : handle,  : str, value : float) -> NoneType
 
3. __init__(handle, rosetta.protocols.pack_daemon.SurrogateVariableExpression) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
active_variables(...) from builtins.PyCapsule
active_variables(rosetta.protocols.pack_daemon.SurrogateVariableExpression) -> rosetta.std.list_std_string_std_allocator_std_string_t
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.SurrogateVariableExpression,  : rosetta.protocols.pack_daemon.SurrogateVariableExpression) -> rosetta.protocols.pack_daemon.SurrogateVariableExpression
differentiate(...) from builtins.PyCapsule
differentiate(self : rosetta.protocols.pack_daemon.SurrogateVariableExpression, varname : str) -> rosetta.numeric.expression_parser.Expression
root_expression(...) from builtins.PyCapsule
root_expression(self : rosetta.protocols.pack_daemon.SurrogateVariableExpression, setting : rosetta.numeric.expression_parser.Expression) -> NoneType

Methods inherited from rosetta.numeric.expression_parser.VariableExpression:
__call__(...) from builtins.PyCapsule
__call__(rosetta.numeric.expression_parser.VariableExpression) -> float
name(...) from builtins.PyCapsule
name(rosetta.numeric.expression_parser.VariableExpression) -> str
set_value(...) from builtins.PyCapsule
set_value(self : rosetta.numeric.expression_parser.VariableExpression, value : float) -> NoneType

 
class TopEntitySet(builtins.object)
     Methods defined here:
__getitem__(...) from builtins.PyCapsule
__getitem__(*args, **kwargs)
Overloaded function.
 
1. __getitem__(self : rosetta.protocols.pack_daemon.TopEntitySet, index : int) -> (rosetta.protocols.genetic_algorithm.Entity, (rosetta.utility.vector1_double, rosetta.utility.vector1_double))
 
2. __getitem__(self : rosetta.protocols.pack_daemon.TopEntitySet, index : int) -> (rosetta.protocols.genetic_algorithm.Entity, (rosetta.utility.vector1_double, rosetta.utility.vector1_double))
__init__(...) from builtins.PyCapsule
__init__(rosetta.protocols.pack_daemon.TopEntitySet) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.TopEntitySet,  : rosetta.protocols.pack_daemon.TopEntitySet) -> rosetta.protocols.pack_daemon.TopEntitySet
clear(...) from builtins.PyCapsule
clear(rosetta.protocols.pack_daemon.TopEntitySet) -> NoneType
desired_entity_history_size(...) from builtins.PyCapsule
desired_entity_history_size(*args, **kwargs)
Overloaded function.
 
1. desired_entity_history_size(self : rosetta.protocols.pack_daemon.TopEntitySet, setting : int) -> NoneType
 
2. desired_entity_history_size(rosetta.protocols.pack_daemon.TopEntitySet) -> int
index_of_entity(...) from builtins.PyCapsule
index_of_entity(self : rosetta.protocols.pack_daemon.TopEntitySet, ent : rosetta.protocols.genetic_algorithm.Entity) -> int
pop(...) from builtins.PyCapsule
pop(rosetta.protocols.pack_daemon.TopEntitySet) -> (rosetta.protocols.genetic_algorithm.Entity, (rosetta.utility.vector1_double, rosetta.utility.vector1_double))
 
remove the worst entity from the set and return it
size(...) from builtins.PyCapsule
size(rosetta.protocols.pack_daemon.TopEntitySet) -> int

 
class VMax(VectorFunction)
    
Method resolution order:
VMax
VectorFunction
rosetta.numeric.expression_parser.UnaryExpression
rosetta.numeric.expression_parser.Expression
builtins.object

Methods defined here:
__call__(...) from builtins.PyCapsule
__call__(rosetta.protocols.pack_daemon.VMax) -> float
__init__(...) from builtins.PyCapsule
__init__(self : handle, ex : rosetta.protocols.pack_daemon.VectorExpression) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
active_variables(...) from builtins.PyCapsule
active_variables(rosetta.protocols.pack_daemon.VMax) -> rosetta.std.list_std_string_std_allocator_std_string_t
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.VMax,  : rosetta.protocols.pack_daemon.VMax) -> rosetta.protocols.pack_daemon.VMax
differentiate(...) from builtins.PyCapsule
differentiate(self : rosetta.protocols.pack_daemon.VMax, varname : str) -> rosetta.numeric.expression_parser.Expression

Methods inherited from rosetta.numeric.expression_parser.UnaryExpression:
ex(...) from builtins.PyCapsule
ex(rosetta.numeric.expression_parser.UnaryExpression) -> rosetta.numeric.expression_parser.Expression
set_expression(...) from builtins.PyCapsule
set_expression(self : rosetta.numeric.expression_parser.UnaryExpression, ex : rosetta.numeric.expression_parser.Expression) -> NoneType

 
class VMaxBy(VectorFunction2)
    Take two vector expressions of equal length; returns the value from position i in
expression 2 where position i is the position with the largest value in expression 1
 
 
Method resolution order:
VMaxBy
VectorFunction2
rosetta.numeric.expression_parser.BinaryExpression
rosetta.numeric.expression_parser.Expression
builtins.object

Methods defined here:
__call__(...) from builtins.PyCapsule
__call__(rosetta.protocols.pack_daemon.VMaxBy) -> float
__init__(...) from builtins.PyCapsule
__init__(self : handle, ex1 : rosetta.protocols.pack_daemon.VectorExpression, ex2 : rosetta.protocols.pack_daemon.VectorExpression) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
active_variables(...) from builtins.PyCapsule
active_variables(rosetta.protocols.pack_daemon.VMaxBy) -> rosetta.std.list_std_string_std_allocator_std_string_t
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.VMaxBy,  : rosetta.protocols.pack_daemon.VMaxBy) -> rosetta.protocols.pack_daemon.VMaxBy
differentiate(...) from builtins.PyCapsule
differentiate(self : rosetta.protocols.pack_daemon.VMaxBy, varname : str) -> rosetta.numeric.expression_parser.Expression

Methods inherited from rosetta.numeric.expression_parser.BinaryExpression:
e1(...) from builtins.PyCapsule
e1(rosetta.numeric.expression_parser.BinaryExpression) -> rosetta.numeric.expression_parser.Expression
e2(...) from builtins.PyCapsule
e2(rosetta.numeric.expression_parser.BinaryExpression) -> rosetta.numeric.expression_parser.Expression
set_first_expression(...) from builtins.PyCapsule
set_first_expression(self : rosetta.numeric.expression_parser.BinaryExpression, e1 : rosetta.numeric.expression_parser.Expression) -> NoneType
set_second_expression(...) from builtins.PyCapsule
set_second_expression(self : rosetta.numeric.expression_parser.BinaryExpression, e2 : rosetta.numeric.expression_parser.Expression) -> NoneType

 
class VMin(VectorFunction)
    
Method resolution order:
VMin
VectorFunction
rosetta.numeric.expression_parser.UnaryExpression
rosetta.numeric.expression_parser.Expression
builtins.object

Methods defined here:
__call__(...) from builtins.PyCapsule
__call__(rosetta.protocols.pack_daemon.VMin) -> float
__init__(...) from builtins.PyCapsule
__init__(self : handle, ex : rosetta.protocols.pack_daemon.VectorExpression) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
active_variables(...) from builtins.PyCapsule
active_variables(rosetta.protocols.pack_daemon.VMin) -> rosetta.std.list_std_string_std_allocator_std_string_t
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.VMin,  : rosetta.protocols.pack_daemon.VMin) -> rosetta.protocols.pack_daemon.VMin
differentiate(...) from builtins.PyCapsule
differentiate(self : rosetta.protocols.pack_daemon.VMin, varname : str) -> rosetta.numeric.expression_parser.Expression

Methods inherited from rosetta.numeric.expression_parser.UnaryExpression:
ex(...) from builtins.PyCapsule
ex(rosetta.numeric.expression_parser.UnaryExpression) -> rosetta.numeric.expression_parser.Expression
set_expression(...) from builtins.PyCapsule
set_expression(self : rosetta.numeric.expression_parser.UnaryExpression, ex : rosetta.numeric.expression_parser.Expression) -> NoneType

 
class VMinBy(VectorFunction2)
    Take two vector expressions of equal length; returns the value from position i in
expression 2 where position i is the position with the smallest value in expression 1
 
 
Method resolution order:
VMinBy
VectorFunction2
rosetta.numeric.expression_parser.BinaryExpression
rosetta.numeric.expression_parser.Expression
builtins.object

Methods defined here:
__call__(...) from builtins.PyCapsule
__call__(rosetta.protocols.pack_daemon.VMinBy) -> float
__init__(...) from builtins.PyCapsule
__init__(self : handle, ex1 : rosetta.protocols.pack_daemon.VectorExpression, ex2 : rosetta.protocols.pack_daemon.VectorExpression) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
active_variables(...) from builtins.PyCapsule
active_variables(rosetta.protocols.pack_daemon.VMinBy) -> rosetta.std.list_std_string_std_allocator_std_string_t
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.VMinBy,  : rosetta.protocols.pack_daemon.VMinBy) -> rosetta.protocols.pack_daemon.VMinBy
differentiate(...) from builtins.PyCapsule
differentiate(self : rosetta.protocols.pack_daemon.VMinBy, varname : str) -> rosetta.numeric.expression_parser.Expression

Methods inherited from rosetta.numeric.expression_parser.BinaryExpression:
e1(...) from builtins.PyCapsule
e1(rosetta.numeric.expression_parser.BinaryExpression) -> rosetta.numeric.expression_parser.Expression
e2(...) from builtins.PyCapsule
e2(rosetta.numeric.expression_parser.BinaryExpression) -> rosetta.numeric.expression_parser.Expression
set_first_expression(...) from builtins.PyCapsule
set_first_expression(self : rosetta.numeric.expression_parser.BinaryExpression, e1 : rosetta.numeric.expression_parser.Expression) -> NoneType
set_second_expression(...) from builtins.PyCapsule
set_second_expression(self : rosetta.numeric.expression_parser.BinaryExpression, e2 : rosetta.numeric.expression_parser.Expression) -> NoneType

 
class VariableVectorExpression(VectorExpression)
    
Method resolution order:
VariableVectorExpression
VectorExpression
rosetta.numeric.expression_parser.Expression
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(self : handle, name : str, vars : rosetta.utility.vector1_std_shared_ptr_const_numeric_expression_parser_VariableExpression_t) -> NoneType
 
2. __init__(handle, rosetta.protocols.pack_daemon.VariableVectorExpression) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
active_variables(...) from builtins.PyCapsule
active_variables(rosetta.protocols.pack_daemon.VariableVectorExpression) -> rosetta.std.list_std_string_std_allocator_std_string_t
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.VariableVectorExpression,  : rosetta.protocols.pack_daemon.VariableVectorExpression) -> rosetta.protocols.pack_daemon.VariableVectorExpression
size(...) from builtins.PyCapsule
size(rosetta.protocols.pack_daemon.VariableVectorExpression) -> int
 
Returns the number of variable expressions this VectorExpression points at
vector_values(...) from builtins.PyCapsule
vector_values(rosetta.protocols.pack_daemon.VariableVectorExpression) -> rosetta.utility.vector1_double

Methods inherited from VectorExpression:
__call__(...) from builtins.PyCapsule
__call__(rosetta.protocols.pack_daemon.VectorExpression) -> float
 
DO NOT CALL THIS FUNCTION.  Vector expressions return
 vectors of values instead of a singular value.
differentiate(...) from builtins.PyCapsule
differentiate(self : rosetta.protocols.pack_daemon.VectorExpression, varname : str) -> rosetta.numeric.expression_parser.Expression
 
DO NOT CALL THIS FUNCTION.  Vector expressions cannot
 be differentiated.
name(...) from builtins.PyCapsule
name(rosetta.protocols.pack_daemon.VectorExpression) -> str

 
class VectorExpression(rosetta.numeric.expression_parser.Expression)
    
Method resolution order:
VectorExpression
rosetta.numeric.expression_parser.Expression
builtins.object

Methods defined here:
__call__(...) from builtins.PyCapsule
__call__(rosetta.protocols.pack_daemon.VectorExpression) -> float
 
DO NOT CALL THIS FUNCTION.  Vector expressions return
 vectors of values instead of a singular value.
__init__(self, /, *args, **kwargs)
Initialize self.  See help(type(self)) for accurate signature.
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.VectorExpression,  : rosetta.protocols.pack_daemon.VectorExpression) -> rosetta.protocols.pack_daemon.VectorExpression
differentiate(...) from builtins.PyCapsule
differentiate(self : rosetta.protocols.pack_daemon.VectorExpression, varname : str) -> rosetta.numeric.expression_parser.Expression
 
DO NOT CALL THIS FUNCTION.  Vector expressions cannot
 be differentiated.
name(...) from builtins.PyCapsule
name(rosetta.protocols.pack_daemon.VectorExpression) -> str
size(...) from builtins.PyCapsule
size(rosetta.protocols.pack_daemon.VectorExpression) -> int
 
Returns the number of vector values that this Expression returns without
 computing those values.
vector_values(...) from builtins.PyCapsule
vector_values(rosetta.protocols.pack_daemon.VectorExpression) -> rosetta.utility.vector1_double

Methods inherited from rosetta.numeric.expression_parser.Expression:
active_variables(...) from builtins.PyCapsule
active_variables(rosetta.numeric.expression_parser.Expression) -> rosetta.std.list_std_string_std_allocator_std_string_t

 
class VectorExpressionCreator(rosetta.numeric.expression_parser.ExpressionCreator)
    
Method resolution order:
VectorExpressionCreator
rosetta.numeric.expression_parser.ExpressionCreator
rosetta.numeric.expression_parser.ASTVisitor
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(self : handle, owner : protocols::pack_daemon::DynamicAggregateFunction) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
handle_function_expression(...) from builtins.PyCapsule
handle_function_expression(self : rosetta.protocols.pack_daemon.VectorExpressionCreator, function : rosetta.numeric.expression_parser.FunctionToken, args : rosetta.utility.vector1_std_shared_ptr_const_numeric_expression_parser_Expression_t) -> rosetta.numeric.expression_parser.Expression
handle_variable_expression(...) from builtins.PyCapsule
handle_variable_expression(self : rosetta.protocols.pack_daemon.VectorExpressionCreator,  : rosetta.numeric.expression_parser.ArithmeticASTValue) -> rosetta.numeric.expression_parser.Expression

Methods inherited from rosetta.numeric.expression_parser.ExpressionCreator:
assign(...) from builtins.PyCapsule
assign(self : rosetta.numeric.expression_parser.ExpressionCreator,  : rosetta.numeric.expression_parser.ExpressionCreator) -> rosetta.numeric.expression_parser.ExpressionCreator
create_expression_tree(...) from builtins.PyCapsule
create_expression_tree(self : rosetta.numeric.expression_parser.ExpressionCreator,  : rosetta.numeric.expression_parser.ArithmeticASTExpression) -> numeric::expression_parser::Expression
visit(...) from builtins.PyCapsule
visit(*args, **kwargs)
Overloaded function.
 
1. visit(self : rosetta.numeric.expression_parser.ExpressionCreator,  : rosetta.numeric.expression_parser.ArithmeticASTExpression) -> NoneType
 
2. visit(self : rosetta.numeric.expression_parser.ExpressionCreator,  : rosetta.numeric.expression_parser.ArithmeticASTFunction) -> NoneType
 
3. visit(self : rosetta.numeric.expression_parser.ExpressionCreator,  : rosetta.numeric.expression_parser.ArithmeticASTTerm) -> NoneType
 
4. visit(self : rosetta.numeric.expression_parser.ExpressionCreator,  : rosetta.numeric.expression_parser.ArithmeticASTFactor) -> NoneType
 
5. visit(self : rosetta.numeric.expression_parser.ExpressionCreator,  : rosetta.numeric.expression_parser.ArithmeticASTValue) -> NoneType
 
6. visit(self : rosetta.numeric.expression_parser.ExpressionCreator,  : rosetta.numeric.expression_parser.ArithmeticASTRestTerm) -> NoneType
 
7. visit(self : rosetta.numeric.expression_parser.ExpressionCreator,  : rosetta.numeric.expression_parser.ArithmeticASTRestExpression) -> NoneType
 
8. visit(self : rosetta.numeric.expression_parser.ExpressionCreator,  : rosetta.numeric.expression_parser.ArithmeticASTNode) -> NoneType

 
class VectorFunction(rosetta.numeric.expression_parser.UnaryExpression)
    
Method resolution order:
VectorFunction
rosetta.numeric.expression_parser.UnaryExpression
rosetta.numeric.expression_parser.Expression
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(self : rosetta.protocols.pack_daemon.VectorFunction, ex : rosetta.protocols.pack_daemon.VectorExpression) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.VectorFunction,  : rosetta.protocols.pack_daemon.VectorFunction) -> rosetta.protocols.pack_daemon.VectorFunction

Methods inherited from rosetta.numeric.expression_parser.UnaryExpression:
active_variables(...) from builtins.PyCapsule
active_variables(rosetta.numeric.expression_parser.UnaryExpression) -> rosetta.std.list_std_string_std_allocator_std_string_t
ex(...) from builtins.PyCapsule
ex(rosetta.numeric.expression_parser.UnaryExpression) -> rosetta.numeric.expression_parser.Expression
set_expression(...) from builtins.PyCapsule
set_expression(self : rosetta.numeric.expression_parser.UnaryExpression, ex : rosetta.numeric.expression_parser.Expression) -> NoneType

Methods inherited from rosetta.numeric.expression_parser.Expression:
__call__(...) from builtins.PyCapsule
__call__(rosetta.numeric.expression_parser.Expression) -> float
differentiate(...) from builtins.PyCapsule
differentiate(self : rosetta.numeric.expression_parser.Expression, varname : str) -> rosetta.numeric.expression_parser.Expression
 
Returns the expression for the partial derivative of this expression
 by the variable named varname.  If the partial derivative is always zero with respect
 to varname, returns null.

 
class VectorFunction2(rosetta.numeric.expression_parser.BinaryExpression)
    
Method resolution order:
VectorFunction2
rosetta.numeric.expression_parser.BinaryExpression
rosetta.numeric.expression_parser.Expression
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(self : rosetta.protocols.pack_daemon.VectorFunction2, ex1 : rosetta.protocols.pack_daemon.VectorExpression, ex2 : rosetta.protocols.pack_daemon.VectorExpression) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.pack_daemon.VectorFunction2,  : rosetta.protocols.pack_daemon.VectorFunction2) -> rosetta.protocols.pack_daemon.VectorFunction2

Methods inherited from rosetta.numeric.expression_parser.BinaryExpression:
active_variables(...) from builtins.PyCapsule
active_variables(rosetta.numeric.expression_parser.BinaryExpression) -> rosetta.std.list_std_string_std_allocator_std_string_t
e1(...) from builtins.PyCapsule
e1(rosetta.numeric.expression_parser.BinaryExpression) -> rosetta.numeric.expression_parser.Expression
e2(...) from builtins.PyCapsule
e2(rosetta.numeric.expression_parser.BinaryExpression) -> rosetta.numeric.expression_parser.Expression
set_first_expression(...) from builtins.PyCapsule
set_first_expression(self : rosetta.numeric.expression_parser.BinaryExpression, e1 : rosetta.numeric.expression_parser.Expression) -> NoneType
set_second_expression(...) from builtins.PyCapsule
set_second_expression(self : rosetta.numeric.expression_parser.BinaryExpression, e2 : rosetta.numeric.expression_parser.Expression) -> NoneType

Methods inherited from rosetta.numeric.expression_parser.Expression:
__call__(...) from builtins.PyCapsule
__call__(rosetta.numeric.expression_parser.Expression) -> float
differentiate(...) from builtins.PyCapsule
differentiate(self : rosetta.numeric.expression_parser.Expression, varname : str) -> rosetta.numeric.expression_parser.Expression
 
Returns the expression for the partial derivative of this expression
 by the variable named varname.  If the partial derivative is always zero with respect
 to varname, returns null.

 
Functions
       
initialize_ga_randomizer_from_entity_task(...) method of builtins.PyCapsule instance
initialize_ga_randomizer_from_entity_task(rand : rosetta.protocols.genetic_algorithm.PositionSpecificRandomizer, entity_task : rosetta.core.pack.task.PackerTask) -> NoneType
initialize_task_from_entity_resfile_and_secondary_resfile(...) method of builtins.PyCapsule instance
initialize_task_from_entity_resfile_and_secondary_resfile(pose : rosetta.core.pose.Pose, ec : rosetta.protocols.pack_daemon.EntityCorrespondence, entity_resfile_contents : rosetta.core.pack.task.ResfileContents, secondary_resfile_contents : rosetta.core.pack.task.ResfileContents, task : rosetta.core.pack.task.PackerTask) -> NoneType

 
Data
        add_daemon = DaemonSetMessage.add_daemon
discard_old_entity = DaemonSetMessage.discard_old_entity
error_message = DaemonSetMessage.error_message
evaluate_entity = DaemonSetMessage.evaluate_entity
geneate_pose_from_old_state = DaemonSetMessage.geneate_pose_from_old_state
keep_rotamer_assignment_for_last_entity = DaemonSetMessage.keep_rotamer_assignment_for_last_entity
n_daemon_set_messages = DaemonSetMessage.n_daemon_set_messages
spin_down = DaemonSetMessage.spin_down
success_message = DaemonSetMessage.success_message