Bindings for protocols::multistate_design namespace

Classes
		builtins.object MultiStateAggregateFunction PartitionAggregateFunction SingleState PackingState SingleStateEntityData SingleStateFitnessFunction MetricCalculatorFitnessFunction rosetta.protocols.genetic_algorithm.Entity(builtins.object) MultiStateEntity rosetta.protocols.genetic_algorithm.EntityElement(builtins.object) PosType rosetta.protocols.genetic_algorithm.EntityElementCreator(builtins.object) PosTypeCreator rosetta.protocols.genetic_algorithm.FitnessFunction(builtins.object) MultiStateFitnessFunction MultiStatePacker   class MetricCalculatorFitnessFunction(SingleStateFitnessFunction)       Method resolution order: MetricCalculatorFitnessFunction SingleStateFitnessFunction builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, calculator_name : str, key : str) -> NoneType   3. __init__(handle, rosetta.protocols.multistate_design.MetricCalculatorFitnessFunction) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.multistate_design.MetricCalculatorFitnessFunction,  : rosetta.protocols.multistate_design.MetricCalculatorFitnessFunction) -> rosetta.protocols.multistate_design.MetricCalculatorFitnessFunction evaluate(...) from builtins.PyCapsule evaluate(self : rosetta.protocols.multistate_design.MetricCalculatorFitnessFunction, pose : rosetta.core.pose.Pose) -> float   class MultiStateAggregateFunction(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.multistate_design.MultiStateAggregateFunction,  : rosetta.protocols.multistate_design.MultiStateAggregateFunction) -> rosetta.protocols.multistate_design.MultiStateAggregateFunction evaluate(...) from builtins.PyCapsule evaluate(self : rosetta.protocols.multistate_design.MultiStateAggregateFunction, single_state_fitnesses : rosetta.utility.vector1_double, fitness_function : protocols::multistate_design::MultiStateFitnessFunction) -> float   class MultiStateEntity(rosetta.protocols.genetic_algorithm.Entity)       Method resolution order: MultiStateEntity rosetta.protocols.genetic_algorithm.Entity builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.multistate_design.MultiStateEntity) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.multistate_design.MultiStateEntity,  : rosetta.protocols.multistate_design.MultiStateEntity) -> rosetta.protocols.multistate_design.MultiStateEntity clone(...) from builtins.PyCapsule clone(rosetta.protocols.multistate_design.MultiStateEntity) -> rosetta.protocols.genetic_algorithm.Entity single_state_entity_data(...) from builtins.PyCapsule single_state_entity_data(*args, **kwargs) Overloaded function.   1. single_state_entity_data(rosetta.protocols.multistate_design.MultiStateEntity) -> rosetta.utility.vector1_protocols_multistate_design_SingleStateEntityData   2. single_state_entity_data(rosetta.protocols.multistate_design.MultiStateEntity) -> rosetta.utility.vector1_protocols_multistate_design_SingleStateEntityData Methods inherited from rosetta.protocols.genetic_algorithm.Entity: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.protocols.genetic_algorithm.Entity, other : rosetta.protocols.genetic_algorithm.Entity) -> bool __str__(...) from builtins.PyCapsule __str__(rosetta.protocols.genetic_algorithm.Entity) -> str fitness(...) from builtins.PyCapsule fitness(rosetta.protocols.genetic_algorithm.Entity) -> float fitness_valid(...) from builtins.PyCapsule fitness_valid(rosetta.protocols.genetic_algorithm.Entity) -> bool set_entity_element(...) from builtins.PyCapsule set_entity_element(self : rosetta.protocols.genetic_algorithm.Entity, index : int, element : rosetta.protocols.genetic_algorithm.EntityElement) -> NoneType set_fitness(...) from builtins.PyCapsule set_fitness(self : rosetta.protocols.genetic_algorithm.Entity, val : float) -> NoneType set_traits(...) from builtins.PyCapsule set_traits(self : rosetta.protocols.genetic_algorithm.Entity, traits : rosetta.utility.vector1_std_shared_ptr_protocols_genetic_algorithm_EntityElement_t) -> NoneType set_traits_size(...) from builtins.PyCapsule set_traits_size(self : rosetta.protocols.genetic_algorithm.Entity, size : int) -> NoneType to_string(...) from builtins.PyCapsule to_string(rosetta.protocols.genetic_algorithm.Entity) -> str traits(...) from builtins.PyCapsule traits(rosetta.protocols.genetic_algorithm.Entity) -> rosetta.utility.vector1_std_shared_ptr_protocols_genetic_algorithm_EntityElement_t traits_string(...) from builtins.PyCapsule traits_string(rosetta.protocols.genetic_algorithm.Entity) -> str   class MultiStateFitnessFunction(rosetta.protocols.genetic_algorithm.FitnessFunction)       Method resolution order: MultiStateFitnessFunction rosetta.protocols.genetic_algorithm.FitnessFunction builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.protocols.multistate_design.MultiStateFitnessFunction) -> NoneType   2. __init__(rosetta.protocols.multistate_design.MultiStateFitnessFunction, rosetta.protocols.multistate_design.MultiStateFitnessFunction) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. add_metric_value_getter(...) from builtins.PyCapsule add_metric_value_getter(self : rosetta.protocols.multistate_design.MultiStateFitnessFunction, name : str, metric_value_getter : protocols::toolbox::pose_metric_calculators::MetricValueGetter) -> NoneType add_state(...) from builtins.PyCapsule add_state(*args, **kwargs) Overloaded function.   1. add_state(self : rosetta.protocols.multistate_design.MultiStateFitnessFunction, state : protocols::multistate_design::SingleState) -> NoneType   2. add_state(self : rosetta.protocols.multistate_design.MultiStateFitnessFunction, pose : rosetta.core.pose.Pose, is_positive : bool) -> NoneType aggregate_function(...) from builtins.PyCapsule aggregate_function(rosetta.protocols.multistate_design.MultiStateFitnessFunction) -> rosetta.protocols.multistate_design.MultiStateAggregateFunction assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.multistate_design.MultiStateFitnessFunction,  : rosetta.protocols.multistate_design.MultiStateFitnessFunction) -> rosetta.protocols.multistate_design.MultiStateFitnessFunction evaluate(...) from builtins.PyCapsule evaluate(*args, **kwargs) Overloaded function.   1. evaluate(self : rosetta.protocols.multistate_design.MultiStateFitnessFunction, entity : rosetta.protocols.genetic_algorithm.Entity) -> float   2. evaluate(self : rosetta.protocols.multistate_design.MultiStateFitnessFunction, entity : rosetta.protocols.genetic_algorithm.Entity, single_state_num : int) -> float evaluate_positive_states(...) from builtins.PyCapsule evaluate_positive_states(self : rosetta.protocols.multistate_design.MultiStateFitnessFunction, entity : rosetta.protocols.genetic_algorithm.Entity) -> float num_negative_states(...) from builtins.PyCapsule num_negative_states(rosetta.protocols.multistate_design.MultiStateFitnessFunction) -> int num_positive_states(...) from builtins.PyCapsule num_positive_states(rosetta.protocols.multistate_design.MultiStateFitnessFunction) -> int num_states(...) from builtins.PyCapsule num_states(*args, **kwargs) Overloaded function.   1. num_states(rosetta.protocols.multistate_design.MultiStateFitnessFunction) -> int   2. num_states(self : rosetta.protocols.multistate_design.MultiStateFitnessFunction, pos_neg : bool) -> int scorefxn(...) from builtins.PyCapsule scorefxn(rosetta.protocols.multistate_design.MultiStateFitnessFunction) -> rosetta.core.scoring.ScoreFunction set_aggregate_function(...) from builtins.PyCapsule set_aggregate_function(self : rosetta.protocols.multistate_design.MultiStateFitnessFunction, aggregate_function : rosetta.protocols.multistate_design.MultiStateAggregateFunction) -> NoneType set_scorefxn(...) from builtins.PyCapsule set_scorefxn(self : rosetta.protocols.multistate_design.MultiStateFitnessFunction, sf : rosetta.core.scoring.ScoreFunction) -> NoneType   class MultiStatePacker(MultiStateFitnessFunction)     /////////////////////////////////////////////////////////////////////////////////////////////////     Method resolution order: MultiStatePacker MultiStateFitnessFunction rosetta.protocols.genetic_algorithm.FitnessFunction builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, num_packs : int) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.multistate_design.MultiStatePacker,  : rosetta.protocols.multistate_design.MultiStatePacker) -> rosetta.protocols.multistate_design.MultiStatePacker evaluate(...) from builtins.PyCapsule evaluate(self : rosetta.protocols.multistate_design.MultiStatePacker, entity : rosetta.protocols.genetic_algorithm.Entity, single_state_num : int) -> float set_num_packs(...) from builtins.PyCapsule set_num_packs(self : rosetta.protocols.multistate_design.MultiStatePacker, num : int) -> NoneType single_state_design(...) from builtins.PyCapsule single_state_design(*args, **kwargs) Overloaded function.   1. single_state_design(rosetta.protocols.multistate_design.MultiStatePacker) -> NoneType   2. single_state_design(self : rosetta.protocols.multistate_design.MultiStatePacker, restrict_to_canonical : bool) -> NoneType Methods inherited from MultiStateFitnessFunction: add_metric_value_getter(...) from builtins.PyCapsule add_metric_value_getter(self : rosetta.protocols.multistate_design.MultiStateFitnessFunction, name : str, metric_value_getter : protocols::toolbox::pose_metric_calculators::MetricValueGetter) -> NoneType add_state(...) from builtins.PyCapsule add_state(*args, **kwargs) Overloaded function.   1. add_state(self : rosetta.protocols.multistate_design.MultiStateFitnessFunction, state : protocols::multistate_design::SingleState) -> NoneType   2. add_state(self : rosetta.protocols.multistate_design.MultiStateFitnessFunction, pose : rosetta.core.pose.Pose, is_positive : bool) -> NoneType aggregate_function(...) from builtins.PyCapsule aggregate_function(rosetta.protocols.multistate_design.MultiStateFitnessFunction) -> rosetta.protocols.multistate_design.MultiStateAggregateFunction evaluate_positive_states(...) from builtins.PyCapsule evaluate_positive_states(self : rosetta.protocols.multistate_design.MultiStateFitnessFunction, entity : rosetta.protocols.genetic_algorithm.Entity) -> float num_negative_states(...) from builtins.PyCapsule num_negative_states(rosetta.protocols.multistate_design.MultiStateFitnessFunction) -> int num_positive_states(...) from builtins.PyCapsule num_positive_states(rosetta.protocols.multistate_design.MultiStateFitnessFunction) -> int num_states(...) from builtins.PyCapsule num_states(*args, **kwargs) Overloaded function.   1. num_states(rosetta.protocols.multistate_design.MultiStateFitnessFunction) -> int   2. num_states(self : rosetta.protocols.multistate_design.MultiStateFitnessFunction, pos_neg : bool) -> int scorefxn(...) from builtins.PyCapsule scorefxn(rosetta.protocols.multistate_design.MultiStateFitnessFunction) -> rosetta.core.scoring.ScoreFunction set_aggregate_function(...) from builtins.PyCapsule set_aggregate_function(self : rosetta.protocols.multistate_design.MultiStateFitnessFunction, aggregate_function : rosetta.protocols.multistate_design.MultiStateAggregateFunction) -> NoneType set_scorefxn(...) from builtins.PyCapsule set_scorefxn(self : rosetta.protocols.multistate_design.MultiStateFitnessFunction, sf : rosetta.core.scoring.ScoreFunction) -> NoneType   class PackingState(SingleState)       Method resolution order: PackingState SingleState builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, pose_in : rosetta.core.pose.Pose, is_positive : bool) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.multistate_design.PackingState,  : rosetta.protocols.multistate_design.PackingState) -> rosetta.protocols.multistate_design.PackingState create_packer_data(...) from builtins.PyCapsule create_packer_data(self : rosetta.protocols.multistate_design.PackingState, scorefxn : rosetta.core.scoring.ScoreFunction, ptask : rosetta.core.pack.task.PackerTask) -> NoneType ig(...) from builtins.PyCapsule ig(rosetta.protocols.multistate_design.PackingState) -> rosetta.core.pack.interaction_graph.InteractionGraphBase ptask(...) from builtins.PyCapsule ptask(rosetta.protocols.multistate_design.PackingState) -> rosetta.core.pack.task.PackerTask rotamersets(...) from builtins.PyCapsule rotamersets(rosetta.protocols.multistate_design.PackingState) -> rosetta.core.pack.rotamer_set.RotamerSets run_packer(...) from builtins.PyCapsule run_packer(self : rosetta.protocols.multistate_design.PackingState, rot_to_pack : rosetta.utility.vector0_int) -> NoneType share_packer_data_from(...) from builtins.PyCapsule share_packer_data_from(self : rosetta.protocols.multistate_design.PackingState, other : rosetta.protocols.multistate_design.PackingState) -> NoneType Methods inherited from SingleState: best_score(...) from builtins.PyCapsule best_score(rosetta.protocols.multistate_design.SingleState) -> float fitness_function(...) from builtins.PyCapsule fitness_function(*args, **kwargs) Overloaded function.   1. fitness_function(self : rosetta.protocols.multistate_design.SingleState, fitness_function : rosetta.protocols.multistate_design.SingleStateFitnessFunction) -> NoneType   2. fitness_function(rosetta.protocols.multistate_design.SingleState) -> rosetta.protocols.multistate_design.SingleStateFitnessFunction is_positive_state(...) from builtins.PyCapsule is_positive_state(rosetta.protocols.multistate_design.SingleState) -> bool nonconst_pose(...) from builtins.PyCapsule nonconst_pose(rosetta.protocols.multistate_design.SingleState) -> rosetta.core.pose.Pose pose(...) from builtins.PyCapsule pose(rosetta.protocols.multistate_design.SingleState) -> rosetta.core.pose.Pose set_best_score(...) from builtins.PyCapsule set_best_score(self : rosetta.protocols.multistate_design.SingleState, score : float) -> NoneType   class PartitionAggregateFunction(MultiStateAggregateFunction)       Method resolution order: PartitionAggregateFunction MultiStateAggregateFunction builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, float, float) -> NoneType   doc   3. __init__(self : handle, temp : float, anchor_offset : float, compare_to_ground_state : bool) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. anchor_offset(...) from builtins.PyCapsule anchor_offset(rosetta.protocols.multistate_design.PartitionAggregateFunction) -> float evaluate(...) from builtins.PyCapsule evaluate(self : rosetta.protocols.multistate_design.PartitionAggregateFunction, single_state_fitnesses : rosetta.utility.vector1_double, fitness_function : rosetta.protocols.multistate_design.MultiStateFitnessFunction) -> float set_anchor_offset(...) from builtins.PyCapsule set_anchor_offset(self : rosetta.protocols.multistate_design.PartitionAggregateFunction, offset : float) -> NoneType set_temp(...) from builtins.PyCapsule set_temp(self : rosetta.protocols.multistate_design.PartitionAggregateFunction, temp : float) -> NoneType temp(...) from builtins.PyCapsule temp(rosetta.protocols.multistate_design.PartitionAggregateFunction) -> float Methods inherited from MultiStateAggregateFunction: assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.multistate_design.MultiStateAggregateFunction,  : rosetta.protocols.multistate_design.MultiStateAggregateFunction) -> rosetta.protocols.multistate_design.MultiStateAggregateFunction   class PosType(rosetta.protocols.genetic_algorithm.EntityElement)       Method resolution order: PosType rosetta.protocols.genetic_algorithm.EntityElement builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.protocols.multistate_design.PosType, rhs : rosetta.protocols.genetic_algorithm.EntityElement) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, index : int, type : rosetta.core.chemical.AA) -> NoneType   3. __init__(self : handle, word : str) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(*args, **kwargs) Overloaded function.   1. assign(self : rosetta.protocols.multistate_design.PosType, rhs : rosetta.protocols.genetic_algorithm.EntityElement) -> rosetta.protocols.genetic_algorithm.EntityElement   2. assign(self : rosetta.protocols.multistate_design.PosType,  : rosetta.protocols.multistate_design.PosType) -> rosetta.protocols.multistate_design.PosType clone(...) from builtins.PyCapsule clone(rosetta.protocols.multistate_design.PosType) -> rosetta.protocols.genetic_algorithm.EntityElement fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.multistate_design.PosType) -> rosetta.protocols.genetic_algorithm.EntityElement hash(...) from builtins.PyCapsule hash(rosetta.protocols.multistate_design.PosType) -> int name(...) from builtins.PyCapsule name(rosetta.protocols.multistate_design.PosType) -> str to_string(...) from builtins.PyCapsule to_string(rosetta.protocols.multistate_design.PosType) -> str type(...) from builtins.PyCapsule type(rosetta.protocols.multistate_design.PosType) -> rosetta.core.chemical.AA Methods inherited from rosetta.protocols.genetic_algorithm.EntityElement: index(...) from builtins.PyCapsule index(*args, **kwargs) Overloaded function.   1. index(rosetta.protocols.genetic_algorithm.EntityElement) -> int   2. index(self : rosetta.protocols.genetic_algorithm.EntityElement, index : int) -> NoneType   class PosTypeCreator(rosetta.protocols.genetic_algorithm.EntityElementCreator)       Method resolution order: PosTypeCreator rosetta.protocols.genetic_algorithm.EntityElementCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.multistate_design.PosTypeCreator,  : rosetta.protocols.multistate_design.PosTypeCreator) -> rosetta.protocols.multistate_design.PosTypeCreator new_entity(...) from builtins.PyCapsule new_entity(self : rosetta.protocols.multistate_design.PosTypeCreator, word : str) -> rosetta.protocols.genetic_algorithm.EntityElement widget_name(...) from builtins.PyCapsule widget_name(rosetta.protocols.multistate_design.PosTypeCreator) -> str   class SingleState(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, pose : rosetta.core.pose.Pose, is_positive : bool) -> NoneType   3. __init__(handle, rosetta.protocols.multistate_design.SingleState) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.multistate_design.SingleState,  : rosetta.protocols.multistate_design.SingleState) -> rosetta.protocols.multistate_design.SingleState best_score(...) from builtins.PyCapsule best_score(rosetta.protocols.multistate_design.SingleState) -> float fitness_function(...) from builtins.PyCapsule fitness_function(*args, **kwargs) Overloaded function.   1. fitness_function(self : rosetta.protocols.multistate_design.SingleState, fitness_function : rosetta.protocols.multistate_design.SingleStateFitnessFunction) -> NoneType   2. fitness_function(rosetta.protocols.multistate_design.SingleState) -> rosetta.protocols.multistate_design.SingleStateFitnessFunction is_positive_state(...) from builtins.PyCapsule is_positive_state(rosetta.protocols.multistate_design.SingleState) -> bool nonconst_pose(...) from builtins.PyCapsule nonconst_pose(rosetta.protocols.multistate_design.SingleState) -> rosetta.core.pose.Pose pose(...) from builtins.PyCapsule pose(rosetta.protocols.multistate_design.SingleState) -> rosetta.core.pose.Pose set_best_score(...) from builtins.PyCapsule set_best_score(self : rosetta.protocols.multistate_design.SingleState, score : float) -> NoneType   class SingleStateEntityData(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.multistate_design.SingleStateEntityData,  : rosetta.protocols.multistate_design.SingleStateEntityData) -> rosetta.protocols.multistate_design.SingleStateEntityData fitness(...) from builtins.PyCapsule fitness(*args, **kwargs) Overloaded function.   1. fitness(rosetta.protocols.multistate_design.SingleStateEntityData) -> float   2. fitness(self : rosetta.protocols.multistate_design.SingleStateEntityData, fitness : float) -> NoneType metric_value(...) from builtins.PyCapsule metric_value(*args, **kwargs) Overloaded function.   1. metric_value(self : rosetta.protocols.multistate_design.SingleStateEntityData, name : str) -> rosetta.basic.MetricValueBase   2. metric_value(self : rosetta.protocols.multistate_design.SingleStateEntityData, name : str, metric_value : rosetta.basic.MetricValueBase) -> NoneType metric_value_map(...) from builtins.PyCapsule metric_value_map(rosetta.protocols.multistate_design.SingleStateEntityData) -> rosetta.std.map_std_string_std_shared_ptr_basic_MetricValueBase_t   class SingleStateFitnessFunction(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.multistate_design.SingleStateFitnessFunction) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.multistate_design.SingleStateFitnessFunction,  : rosetta.protocols.multistate_design.SingleStateFitnessFunction) -> rosetta.protocols.multistate_design.SingleStateFitnessFunction evaluate(...) from builtins.PyCapsule evaluate(self : rosetta.protocols.multistate_design.SingleStateFitnessFunction, pose : rosetta.core.pose.Pose) -> float

Functions
		entity_elements_from_1letterstring(...) method of builtins.PyCapsule instance entity_elements_from_1letterstring(input : str) -> rosetta.utility.vector1_std_shared_ptr_protocols_genetic_algorithm_EntityElement_t   Creates a set of PosType entity-elements from a string of 1-letter AA codes limit_rotamer_set(...) method of builtins.PyCapsule instance limit_rotamer_set(rot_to_pack : rosetta.utility.vector0_int, state : protocols::multistate_design::PackingState, seq : rosetta.utility.vector1_std_shared_ptr_protocols_genetic_algorithm_EntityElement_t) -> NoneType list_amino_acid_options(...) method of builtins.PyCapsule instance list_amino_acid_options(residue_index : int, rtask : rosetta.core.pack.task.ResidueLevelTask) -> rosetta.utility.vector1_std_shared_ptr_protocols_genetic_algorithm_EntityElement_t restrict_to_canonical_aas(...) method of builtins.PyCapsule instance restrict_to_canonical_aas(state : protocols::multistate_design::PackingState, rot_to_pack : rosetta.utility.vector0_int) -> NoneType