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- builtins.object
-
- Embedding
- EmbeddingDef
class Embedding(builtins.object) |
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Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle) -> NoneType
2. __init__(self : handle, embedding : protocols::membrane::geometry::EmbeddingDef) -> NoneType
3. __init__(self : handle, topology : rosetta.core.conformation.membrane.SpanningTopology, radius : float) -> NoneType
4. __init__(self : handle, topology : rosetta.core.conformation.membrane.SpanningTopology, pose : rosetta.core.pose.Pose) -> NoneType
5. __init__(handle, rosetta.protocols.membrane.geometry.Embedding) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- add_span_embedding(...) from builtins.PyCapsule
- add_span_embedding(*args, **kwargs)
Overloaded function.
1. add_span_embedding(self : rosetta.protocols.membrane.geometry.Embedding, span_embed : protocols::membrane::geometry::EmbeddingDef) -> NoneType
2. add_span_embedding(self : rosetta.protocols.membrane.geometry.Embedding, center : rosetta.numeric.xyzVector_double_t, normal : rosetta.numeric.xyzVector_double_t) -> NoneType
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.membrane.geometry.Embedding, src : rosetta.protocols.membrane.geometry.Embedding) -> rosetta.protocols.membrane.geometry.Embedding
Assignment Operator
- embedding(...) from builtins.PyCapsule
- embedding(self : rosetta.protocols.membrane.geometry.Embedding, span_number : int) -> protocols::membrane::geometry::EmbeddingDef
- embeddings(...) from builtins.PyCapsule
- embeddings(rosetta.protocols.membrane.geometry.Embedding) -> rosetta.utility.vector1_std_shared_ptr_protocols_membrane_geometry_EmbeddingDef_t
- from_spans(...) from builtins.PyCapsule
- from_spans(self : rosetta.protocols.membrane.geometry.Embedding, topology : rosetta.core.conformation.membrane.SpanningTopology, pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_std_shared_ptr_protocols_membrane_geometry_EmbeddingDef_t
///////////////////
HELPER METHODS ///
///////////////////
- invert(...) from builtins.PyCapsule
- invert(rosetta.protocols.membrane.geometry.Embedding) -> NoneType
- nspans(...) from builtins.PyCapsule
- nspans(rosetta.protocols.membrane.geometry.Embedding) -> int
- show(...) from builtins.PyCapsule
- show(rosetta.protocols.membrane.geometry.Embedding) -> NoneType
- total_embed(...) from builtins.PyCapsule
- total_embed(rosetta.protocols.membrane.geometry.Embedding) -> protocols::membrane::geometry::EmbeddingDef
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class EmbeddingDef(builtins.object) |
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Embedding Setup Helper Class
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Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle) -> NoneType
2. __init__(self : handle, center : rosetta.numeric.xyzVector_double_t, normal : rosetta.numeric.xyzVector_double_t) -> NoneType
3. __init__(handle, rosetta.core.pose.Pose, int, int) -> NoneType
doc
4. __init__(self : handle, pose : rosetta.core.pose.Pose, start : int, end : int, pos_z : bool) -> NoneType
5. __init__(handle, rosetta.protocols.membrane.geometry.EmbeddingDef) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.membrane.geometry.EmbeddingDef, src : rosetta.protocols.membrane.geometry.EmbeddingDef) -> rosetta.protocols.membrane.geometry.EmbeddingDef
Assignment Operator
- center(...) from builtins.PyCapsule
- center(rosetta.protocols.membrane.geometry.EmbeddingDef) -> rosetta.numeric.xyzVector_double_t
Access center param
- check_range(...) from builtins.PyCapsule
- check_range(rosetta.protocols.membrane.geometry.EmbeddingDef) -> NoneType
Check reasonable range of vectors in embedding object
- equals(...) from builtins.PyCapsule
- equals(self : rosetta.protocols.membrane.geometry.EmbeddingDef, other : rosetta.protocols.membrane.geometry.EmbeddingDef) -> bool
Equals method
- from_span(...) from builtins.PyCapsule
- from_span(self : rosetta.protocols.membrane.geometry.EmbeddingDef, pose : rosetta.core.pose.Pose, start : int, end : int) -> NoneType
From span
- from_span_positive_z(...) from builtins.PyCapsule
- from_span_positive_z(self : rosetta.protocols.membrane.geometry.EmbeddingDef, pose : rosetta.core.pose.Pose, start : int, end : int) -> NoneType
From span
- invert(...) from builtins.PyCapsule
- invert(rosetta.protocols.membrane.geometry.EmbeddingDef) -> NoneType
Invert normal
- normal(...) from builtins.PyCapsule
- normal(rosetta.protocols.membrane.geometry.EmbeddingDef) -> rosetta.numeric.xyzVector_double_t
Access Normal Param
- set_center(...) from builtins.PyCapsule
- set_center(self : rosetta.protocols.membrane.geometry.EmbeddingDef, center : rosetta.numeric.xyzVector_double_t) -> NoneType
Set Center Param
- set_normal(...) from builtins.PyCapsule
- set_normal(self : rosetta.protocols.membrane.geometry.EmbeddingDef, normal : rosetta.numeric.xyzVector_double_t) -> NoneType
Set Normal Param
- translate_by(...) from builtins.PyCapsule
- translate_by(self : rosetta.protocols.membrane.geometry.EmbeddingDef, translation : rosetta.protocols.membrane.geometry.EmbeddingDef) -> NoneType
Translate by center and normal
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