Bindings for protocols::md namespace

Classes
		builtins.object Constraint MDscheduleData Rattle Thermostat rosetta.protocols.moves.Mover(builtins.object) MDBase CartesianMD rosetta.protocols.moves.MoverCreator(builtins.object) CartesianMDCreator   class CartesianMD(MDBase)       Method resolution order: CartesianMD MDBase rosetta.protocols.moves.Mover builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.core.pose.Pose, rosetta.core.scoring.ScoreFunction) -> NoneType   doc   3. __init__(self : handle, pose : rosetta.core.pose.Pose, sfxn : rosetta.core.scoring.ScoreFunction, movemap : rosetta.core.kinematics.MoveMap) -> NoneType   4. __init__(self : handle, pose : rosetta.core.pose.Pose, sfxn : rosetta.core.scoring.ScoreFunction) -> NoneType   5. __init__(self : handle, pose : rosetta.core.pose.Pose, sfxn : rosetta.core.scoring.ScoreFunction, movemap : rosetta.core.kinematics.MoveMap) -> NoneType   6. __init__(handle, rosetta.protocols.md.CartesianMD) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.md.CartesianMD, pose : rosetta.core.pose.Pose) -> NoneType assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.md.CartesianMD,  : rosetta.protocols.md.CartesianMD) -> rosetta.protocols.md.CartesianMD clone(...) from builtins.PyCapsule clone(rosetta.protocols.md.CartesianMD) -> rosetta.protocols.moves.Mover cst_on_pose_dynamic(...) from builtins.PyCapsule cst_on_pose_dynamic(self : rosetta.protocols.md.CartesianMD, pose : rosetta.core.pose.Pose, ref_xyz : rosetta.utility.vector1_double, curr_eqxyz : rosetta.utility.vector1_double, prv_eqxyz : rosetta.utility.vector1_double, min_map : rosetta.core.optimization.CartesianMinimizerMap) -> NoneType cst_on_pose_simple(...) from builtins.PyCapsule cst_on_pose_simple(self : rosetta.protocols.md.CartesianMD, pose : rosetta.core.pose.Pose) -> NoneType dump_poses(...) from builtins.PyCapsule dump_poses(self : rosetta.protocols.md.CartesianMD, pose_ref : rosetta.core.pose.Pose) -> rosetta.utility.vector1_core_pose_Pose fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.md.CartesianMD) -> rosetta.protocols.moves.Mover get_current_eqxyz(...) from builtins.PyCapsule get_current_eqxyz(rosetta.protocols.md.CartesianMD) -> rosetta.utility.vector1_double get_name(...) from builtins.PyCapsule get_name(rosetta.protocols.md.CartesianMD) -> str init(...) from builtins.PyCapsule init(rosetta.protocols.md.CartesianMD) -> NoneType movemap(...) from builtins.PyCapsule movemap(rosetta.protocols.md.CartesianMD) -> rosetta.core.kinematics.MoveMap parse_movemap(...) from builtins.PyCapsule parse_movemap(self : rosetta.protocols.md.CartesianMD, tag : rosetta.utility.tag.Tag, data : rosetta.basic.datacache.DataMap, pose : rosetta.core.pose.Pose) -> NoneType parse_opts(...) from builtins.PyCapsule parse_opts(self : rosetta.protocols.md.CartesianMD, tag : rosetta.utility.tag.Tag, data : rosetta.basic.datacache.DataMap, pose : rosetta.core.pose.Pose) -> NoneType set_movemap(...) from builtins.PyCapsule set_movemap(self : rosetta.protocols.md.CartesianMD,  : rosetta.core.pose.Pose, movemap : rosetta.core.kinematics.MoveMap) -> NoneType update_restraint(...) from builtins.PyCapsule update_restraint(self : rosetta.protocols.md.CartesianMD, pose : rosetta.core.pose.Pose, min_map : rosetta.core.optimization.CartesianMinimizerMap) -> NoneType use_rattle(...) from builtins.PyCapsule use_rattle(self : rosetta.protocols.md.CartesianMD, value : bool) -> NoneType Methods inherited from MDBase: cummulative_time(...) from builtins.PyCapsule cummulative_time(rosetta.protocols.md.MDBase) -> float dt(...) from builtins.PyCapsule dt(rosetta.protocols.md.MDBase) -> float n_dof(...) from builtins.PyCapsule n_dof(rosetta.protocols.md.MDBase) -> int nstep(...) from builtins.PyCapsule nstep(rosetta.protocols.md.MDBase) -> int parse_schfile(...) from builtins.PyCapsule parse_schfile(self : rosetta.protocols.md.MDBase, schfile : str) -> NoneType report_as_silent(...) from builtins.PyCapsule report_as_silent(self : rosetta.protocols.md.MDBase, filename : str, scoreonly : bool) -> NoneType report_silent(...) from builtins.PyCapsule report_silent(*args, **kwargs) Overloaded function.   1. report_silent(self : rosetta.protocols.md.MDBase, pose : rosetta.core.pose.Pose) -> NoneType   2. report_silent(self : rosetta.protocols.md.MDBase, pose : rosetta.core.pose.Pose, rmsd : float) -> NoneType   3. report_silent(self : rosetta.protocols.md.MDBase, pose : rosetta.core.pose.Pose, rmsd : float, gdttm : float) -> NoneType   4. report_silent(self : rosetta.protocols.md.MDBase, pose : rosetta.core.pose.Pose, rmsd : float, gdttm : float, gdtha : float) -> NoneType scorefxn(...) from builtins.PyCapsule scorefxn(*args, **kwargs) Overloaded function.   1. scorefxn(rosetta.protocols.md.MDBase) -> rosetta.core.scoring.ScoreFunction   2. scorefxn(rosetta.protocols.md.MDBase) -> rosetta.core.scoring.ScoreFunction set_Gamma(...) from builtins.PyCapsule set_Gamma(self : rosetta.protocols.md.MDBase, value : float) -> NoneType set_Kappa(...) from builtins.PyCapsule set_Kappa(self : rosetta.protocols.md.MDBase, value : float) -> NoneType set_constraint(...) from builtins.PyCapsule set_constraint(self : rosetta.protocols.md.MDBase, sdev : float) -> NoneType set_context_update_step(...) from builtins.PyCapsule set_context_update_step(self : rosetta.protocols.md.MDBase, value : int) -> NoneType set_defaults(...) from builtins.PyCapsule set_defaults(rosetta.protocols.md.MDBase) -> NoneType set_dt(...) from builtins.PyCapsule set_dt(self : rosetta.protocols.md.MDBase, value : float) -> NoneType set_energy_reportstep(...) from builtins.PyCapsule set_energy_reportstep(self : rosetta.protocols.md.MDBase, nstep : int) -> NoneType set_nstep(...) from builtins.PyCapsule set_nstep(self : rosetta.protocols.md.MDBase, nstep : int) -> NoneType set_premin(...) from builtins.PyCapsule set_premin(self : rosetta.protocols.md.MDBase, value : int) -> NoneType set_report_scorecomp(...) from builtins.PyCapsule set_report_scorecomp(self : rosetta.protocols.md.MDBase, value : bool) -> NoneType set_reportstep(...) from builtins.PyCapsule set_reportstep(self : rosetta.protocols.md.MDBase, nstep : int) -> NoneType set_rsr_update_step(...) from builtins.PyCapsule set_rsr_update_step(self : rosetta.protocols.md.MDBase, nstep : int) -> NoneType set_scorefxn_obj(...) from builtins.PyCapsule set_scorefxn_obj(self : rosetta.protocols.md.MDBase, sfxn : rosetta.core.scoring.ScoreFunction) -> NoneType set_selectmode(...) from builtins.PyCapsule set_selectmode(self : rosetta.protocols.md.MDBase, selectmode_in : str) -> NoneType set_store_trj(...) from builtins.PyCapsule set_store_trj(self : rosetta.protocols.md.MDBase, value : bool) -> NoneType set_temperature(...) from builtins.PyCapsule set_temperature(self : rosetta.protocols.md.MDBase, temp0 : float) -> NoneType set_write_dynamic_rsr(...) from builtins.PyCapsule set_write_dynamic_rsr(self : rosetta.protocols.md.MDBase, filename : str) -> NoneType store_trj(...) from builtins.PyCapsule store_trj(rosetta.protocols.md.MDBase) -> bool temp0(...) from builtins.PyCapsule temp0(rosetta.protocols.md.MDBase) -> float Methods inherited from rosetta.protocols.moves.Mover: clear_info(...) from builtins.PyCapsule clear_info(rosetta.protocols.moves.Mover) -> NoneType   Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.      clear_info is called by jd2 before calling apply create(...) from builtins.PyCapsule create(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover get_additional_output(...) from builtins.PyCapsule get_additional_output(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose   fpd      Mechanism by which a mover may return multiple output poses from a single input pose. get_current_job(...) from builtins.PyCapsule get_current_job(rosetta.protocols.moves.Mover) -> protocols::jobdist::BasicJob get_current_tag(...) from builtins.PyCapsule get_current_tag(rosetta.protocols.moves.Mover) -> str   A tag is a unique identifier used to identify structures produced  by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag )  sets the tag.  This functionality is not intended for use with the 2008 job distributor. get_input_pose(...) from builtins.PyCapsule get_input_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose get_last_move_status(...) from builtins.PyCapsule get_last_move_status(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.MoverStatus   returns status after an apply().  The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say "that run was no good, skip it" then use the protected last_move_status(MoverStatus) to change the value that this function will return. get_native_pose(...) from builtins.PyCapsule get_native_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose get_self_ptr(...) from builtins.PyCapsule get_self_ptr(*args, **kwargs) Overloaded function.   1. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover   2. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover get_self_weak_ptr(...) from builtins.PyCapsule get_self_weak_ptr(*args, **kwargs) Overloaded function.   1. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_const_protocols_moves_Mover_t   2. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_protocols_moves_Mover_t get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.moves.Mover) -> str info(...) from builtins.PyCapsule info(*args, **kwargs) Overloaded function.   1. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t   non-const accessor   2. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t   const accessor last_proposal_density_ratio(...) from builtins.PyCapsule last_proposal_density_ratio(rosetta.protocols.moves.Mover) -> float name(...) from builtins.PyCapsule name() -> str register_options(...) from builtins.PyCapsule register_options(*args, **kwargs) Overloaded function.   1. register_options() -> NoneType   Overload this static method if you access options within the mover.      These options will end up in -help of your application if users of this mover call register_options.  Do this recursively!  If you use movers within your mover, call their register_options in your register_options() method.   2. register_options() -> NoneType   3. register_options() -> NoneType   4. register_options() -> NoneType   5. register_options() -> NoneType   6. register_options() -> NoneType   7. register_options() -> NoneType   8. register_options() -> NoneType   9. register_options() -> NoneType   Associates relevant options with the AntibodyModeler class   10. register_options() -> NoneType   Associates relevant options with the AntibodyModeler class   11. register_options() -> NoneType   Associates relevant options with the SnugDock class   12. register_options() -> NoneType   Associates relevant options with the SnugDockProtocol class   13. register_options() -> NoneType   Register the options used by this mover with the global options  system.   14. register_options() -> NoneType   15. register_options() -> NoneType   Associate relevant options with the TemperedDocking class.   16. register_options() -> NoneType   17. register_options() -> NoneType   18. register_options() -> NoneType   Associates relevant options with the TemperedDocking class.   19. register_options() -> NoneType   20. register_options() -> NoneType   Associates relevant options with the ConstraintSetMover class   21. register_options() -> NoneType   22. register_options() -> NoneType   Associates relevant options with the DockingInitialPerturbation class   23. register_options() -> NoneType   Associates relevant options with the DockingProtocol class   24. register_options() -> NoneType   Associates relevant options with the TemperedDocking class   25. register_options() -> NoneType   26. register_options() -> NoneType   27. register_options() -> NoneType   28. register_options() -> NoneType   register options   29. register_options() -> NoneType   30. register_options() -> NoneType   Registers applicable options   31. register_options() -> NoneType   Register options with the option system.   32. register_options() -> NoneType   33. register_options() -> NoneType   34. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycle class   35. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycleContainer class   36. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycle class   37. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycle class   38. register_options() -> NoneType   39. register_options() -> NoneType   Register options with the option system.   40. register_options() -> NoneType reinitialize_for_each_job(...) from builtins.PyCapsule reinitialize_for_each_job(rosetta.protocols.moves.Mover) -> bool   Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on  each use. reinitialize_for_new_input(...) from builtins.PyCapsule reinitialize_for_new_input(rosetta.protocols.moves.Mover) -> bool   Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input  pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for  that one input pose). reset_status(...) from builtins.PyCapsule reset_status(rosetta.protocols.moves.Mover) -> NoneType   resets status to SUCCESS, meant to be used before an apply().  The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. set_current_job(...) from builtins.PyCapsule set_current_job(self : rosetta.protocols.moves.Mover, job : protocols::jobdist::BasicJob) -> NoneType   ////////////////////////////end Job Distributor interface//////////////////////////////////////// set_current_tag(...) from builtins.PyCapsule set_current_tag(self : rosetta.protocols.moves.Mover, new_tag : str) -> NoneType set_input_pose(...) from builtins.PyCapsule set_input_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType   setter for poses contained for rms set_native_pose(...) from builtins.PyCapsule set_native_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType   setter for native poses contained for rms ---- we should get rid of this method? it is widely used, but a bit unsafe set_type(...) from builtins.PyCapsule set_type(self : rosetta.protocols.moves.Mover, setting : str) -> NoneType test_move(...) from builtins.PyCapsule test_move(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType   : Unit test support function.  Apply one move to a given pose.       Allows extra test specific functions to be called before applying type(...) from builtins.PyCapsule type(*args, **kwargs) Overloaded function.   1. type(rosetta.protocols.moves.Mover) -> str   2. type(self : rosetta.protocols.moves.Mover, type_in : str) -> NoneType   class CartesianMDCreator(rosetta.protocols.moves.MoverCreator)       Method resolution order: CartesianMDCreator rosetta.protocols.moves.MoverCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.md.CartesianMDCreator,  : rosetta.protocols.md.CartesianMDCreator) -> rosetta.protocols.md.CartesianMDCreator create_mover(...) from builtins.PyCapsule create_mover(rosetta.protocols.md.CartesianMDCreator) -> rosetta.protocols.moves.Mover keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.md.CartesianMDCreator) -> str mover_name(...) from builtins.PyCapsule mover_name() -> str   class Constraint(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.protocols.md.Constraint) -> NoneType   2. __init__(self : rosetta.protocols.md.Constraint,  : rosetta.protocols.md.Constraint) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.md.Constraint,  : rosetta.protocols.md.Constraint) -> rosetta.protocols.md.Constraint Data descriptors defined here: a b k   class MDBase(rosetta.protocols.moves.Mover)       Method resolution order: MDBase rosetta.protocols.moves.Mover builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.protocols.md.MDBase) -> NoneType   2. __init__(rosetta.protocols.md.MDBase, rosetta.protocols.md.MDBase) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.md.MDBase, pose : rosetta.core.pose.Pose) -> NoneType assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.md.MDBase,  : rosetta.protocols.md.MDBase) -> rosetta.protocols.md.MDBase cummulative_time(...) from builtins.PyCapsule cummulative_time(rosetta.protocols.md.MDBase) -> float dt(...) from builtins.PyCapsule dt(rosetta.protocols.md.MDBase) -> float get_name(...) from builtins.PyCapsule get_name(rosetta.protocols.md.MDBase) -> str movemap(...) from builtins.PyCapsule movemap(rosetta.protocols.md.MDBase) -> rosetta.core.kinematics.MoveMap n_dof(...) from builtins.PyCapsule n_dof(rosetta.protocols.md.MDBase) -> int nstep(...) from builtins.PyCapsule nstep(rosetta.protocols.md.MDBase) -> int parse_schfile(...) from builtins.PyCapsule parse_schfile(self : rosetta.protocols.md.MDBase, schfile : str) -> NoneType report_as_silent(...) from builtins.PyCapsule report_as_silent(self : rosetta.protocols.md.MDBase, filename : str, scoreonly : bool) -> NoneType report_silent(...) from builtins.PyCapsule report_silent(*args, **kwargs) Overloaded function.   1. report_silent(self : rosetta.protocols.md.MDBase, pose : rosetta.core.pose.Pose) -> NoneType   2. report_silent(self : rosetta.protocols.md.MDBase, pose : rosetta.core.pose.Pose, rmsd : float) -> NoneType   3. report_silent(self : rosetta.protocols.md.MDBase, pose : rosetta.core.pose.Pose, rmsd : float, gdttm : float) -> NoneType   4. report_silent(self : rosetta.protocols.md.MDBase, pose : rosetta.core.pose.Pose, rmsd : float, gdttm : float, gdtha : float) -> NoneType scorefxn(...) from builtins.PyCapsule scorefxn(*args, **kwargs) Overloaded function.   1. scorefxn(rosetta.protocols.md.MDBase) -> rosetta.core.scoring.ScoreFunction   2. scorefxn(rosetta.protocols.md.MDBase) -> rosetta.core.scoring.ScoreFunction set_Gamma(...) from builtins.PyCapsule set_Gamma(self : rosetta.protocols.md.MDBase, value : float) -> NoneType set_Kappa(...) from builtins.PyCapsule set_Kappa(self : rosetta.protocols.md.MDBase, value : float) -> NoneType set_constraint(...) from builtins.PyCapsule set_constraint(self : rosetta.protocols.md.MDBase, sdev : float) -> NoneType set_context_update_step(...) from builtins.PyCapsule set_context_update_step(self : rosetta.protocols.md.MDBase, value : int) -> NoneType set_defaults(...) from builtins.PyCapsule set_defaults(rosetta.protocols.md.MDBase) -> NoneType set_dt(...) from builtins.PyCapsule set_dt(self : rosetta.protocols.md.MDBase, value : float) -> NoneType set_energy_reportstep(...) from builtins.PyCapsule set_energy_reportstep(self : rosetta.protocols.md.MDBase, nstep : int) -> NoneType set_movemap(...) from builtins.PyCapsule set_movemap(self : rosetta.protocols.md.MDBase, pose : rosetta.core.pose.Pose, movemap : rosetta.core.kinematics.MoveMap) -> NoneType set_nstep(...) from builtins.PyCapsule set_nstep(self : rosetta.protocols.md.MDBase, nstep : int) -> NoneType set_premin(...) from builtins.PyCapsule set_premin(self : rosetta.protocols.md.MDBase, value : int) -> NoneType set_report_scorecomp(...) from builtins.PyCapsule set_report_scorecomp(self : rosetta.protocols.md.MDBase, value : bool) -> NoneType set_reportstep(...) from builtins.PyCapsule set_reportstep(self : rosetta.protocols.md.MDBase, nstep : int) -> NoneType set_rsr_update_step(...) from builtins.PyCapsule set_rsr_update_step(self : rosetta.protocols.md.MDBase, nstep : int) -> NoneType set_scorefxn_obj(...) from builtins.PyCapsule set_scorefxn_obj(self : rosetta.protocols.md.MDBase, sfxn : rosetta.core.scoring.ScoreFunction) -> NoneType set_selectmode(...) from builtins.PyCapsule set_selectmode(self : rosetta.protocols.md.MDBase, selectmode_in : str) -> NoneType set_store_trj(...) from builtins.PyCapsule set_store_trj(self : rosetta.protocols.md.MDBase, value : bool) -> NoneType set_temperature(...) from builtins.PyCapsule set_temperature(self : rosetta.protocols.md.MDBase, temp0 : float) -> NoneType set_write_dynamic_rsr(...) from builtins.PyCapsule set_write_dynamic_rsr(self : rosetta.protocols.md.MDBase, filename : str) -> NoneType store_trj(...) from builtins.PyCapsule store_trj(rosetta.protocols.md.MDBase) -> bool temp0(...) from builtins.PyCapsule temp0(rosetta.protocols.md.MDBase) -> float Methods inherited from rosetta.protocols.moves.Mover: clear_info(...) from builtins.PyCapsule clear_info(rosetta.protocols.moves.Mover) -> NoneType   Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.      clear_info is called by jd2 before calling apply clone(...) from builtins.PyCapsule clone(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover   Return a clone of the Mover object. create(...) from builtins.PyCapsule create(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover   Generates a new Mover object freshly created with the default ctor. get_additional_output(...) from builtins.PyCapsule get_additional_output(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose   fpd      Mechanism by which a mover may return multiple output poses from a single input pose. get_current_job(...) from builtins.PyCapsule get_current_job(rosetta.protocols.moves.Mover) -> protocols::jobdist::BasicJob get_current_tag(...) from builtins.PyCapsule get_current_tag(rosetta.protocols.moves.Mover) -> str   A tag is a unique identifier used to identify structures produced  by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag )  sets the tag.  This functionality is not intended for use with the 2008 job distributor. get_input_pose(...) from builtins.PyCapsule get_input_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose get_last_move_status(...) from builtins.PyCapsule get_last_move_status(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.MoverStatus   returns status after an apply().  The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say "that run was no good, skip it" then use the protected last_move_status(MoverStatus) to change the value that this function will return. get_native_pose(...) from builtins.PyCapsule get_native_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose get_self_ptr(...) from builtins.PyCapsule get_self_ptr(*args, **kwargs) Overloaded function.   1. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover   2. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover get_self_weak_ptr(...) from builtins.PyCapsule get_self_weak_ptr(*args, **kwargs) Overloaded function.   1. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_const_protocols_moves_Mover_t   2. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_protocols_moves_Mover_t get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.moves.Mover) -> str info(...) from builtins.PyCapsule info(*args, **kwargs) Overloaded function.   1. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t   non-const accessor   2. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t   const accessor last_proposal_density_ratio(...) from builtins.PyCapsule last_proposal_density_ratio(rosetta.protocols.moves.Mover) -> float name(...) from builtins.PyCapsule name() -> str register_options(...) from builtins.PyCapsule register_options(*args, **kwargs) Overloaded function.   1. register_options() -> NoneType   Overload this static method if you access options within the mover.      These options will end up in -help of your application if users of this mover call register_options.  Do this recursively!  If you use movers within your mover, call their register_options in your register_options() method.   2. register_options() -> NoneType   3. register_options() -> NoneType   4. register_options() -> NoneType   5. register_options() -> NoneType   6. register_options() -> NoneType   7. register_options() -> NoneType   8. register_options() -> NoneType   9. register_options() -> NoneType   Associates relevant options with the AntibodyModeler class   10. register_options() -> NoneType   Associates relevant options with the AntibodyModeler class   11. register_options() -> NoneType   Associates relevant options with the SnugDock class   12. register_options() -> NoneType   Associates relevant options with the SnugDockProtocol class   13. register_options() -> NoneType   Register the options used by this mover with the global options  system.   14. register_options() -> NoneType   15. register_options() -> NoneType   Associate relevant options with the TemperedDocking class.   16. register_options() -> NoneType   17. register_options() -> NoneType   18. register_options() -> NoneType   Associates relevant options with the TemperedDocking class.   19. register_options() -> NoneType   20. register_options() -> NoneType   Associates relevant options with the ConstraintSetMover class   21. register_options() -> NoneType   22. register_options() -> NoneType   Associates relevant options with the DockingInitialPerturbation class   23. register_options() -> NoneType   Associates relevant options with the DockingProtocol class   24. register_options() -> NoneType   Associates relevant options with the TemperedDocking class   25. register_options() -> NoneType   26. register_options() -> NoneType   27. register_options() -> NoneType   28. register_options() -> NoneType   register options   29. register_options() -> NoneType   30. register_options() -> NoneType   Registers applicable options   31. register_options() -> NoneType   Register options with the option system.   32. register_options() -> NoneType   33. register_options() -> NoneType   34. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycle class   35. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycleContainer class   36. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycle class   37. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycle class   38. register_options() -> NoneType   39. register_options() -> NoneType   Register options with the option system.   40. register_options() -> NoneType reinitialize_for_each_job(...) from builtins.PyCapsule reinitialize_for_each_job(rosetta.protocols.moves.Mover) -> bool   Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on  each use. reinitialize_for_new_input(...) from builtins.PyCapsule reinitialize_for_new_input(rosetta.protocols.moves.Mover) -> bool   Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input  pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for  that one input pose). reset_status(...) from builtins.PyCapsule reset_status(rosetta.protocols.moves.Mover) -> NoneType   resets status to SUCCESS, meant to be used before an apply().  The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. set_current_job(...) from builtins.PyCapsule set_current_job(self : rosetta.protocols.moves.Mover, job : protocols::jobdist::BasicJob) -> NoneType   ////////////////////////////end Job Distributor interface//////////////////////////////////////// set_current_tag(...) from builtins.PyCapsule set_current_tag(self : rosetta.protocols.moves.Mover, new_tag : str) -> NoneType set_input_pose(...) from builtins.PyCapsule set_input_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType   setter for poses contained for rms set_native_pose(...) from builtins.PyCapsule set_native_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType   setter for native poses contained for rms ---- we should get rid of this method? it is widely used, but a bit unsafe set_type(...) from builtins.PyCapsule set_type(self : rosetta.protocols.moves.Mover, setting : str) -> NoneType test_move(...) from builtins.PyCapsule test_move(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType   : Unit test support function.  Apply one move to a given pose.       Allows extra test specific functions to be called before applying type(...) from builtins.PyCapsule type(*args, **kwargs) Overloaded function.   1. type(rosetta.protocols.moves.Mover) -> str   2. type(self : rosetta.protocols.moves.Mover, type_in : str) -> NoneType   class MDscheduleData(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.protocols.md.MDscheduleData) -> NoneType   2. __init__(self : rosetta.protocols.md.MDscheduleData,  : rosetta.protocols.md.MDscheduleData) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.md.MDscheduleData,  : rosetta.protocols.md.MDscheduleData) -> rosetta.protocols.md.MDscheduleData Data descriptors defined here: nstep temp0 type   class Rattle(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.protocols.md.Rattle) -> NoneType   2. __init__(self : rosetta.protocols.md.Rattle, pose : rosetta.core.pose.Pose, min_map : rosetta.core.optimization.CartesianMinimizerMap) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. ncst(...) from builtins.PyCapsule ncst(rosetta.protocols.md.Rattle) -> int run_rattle1(...) from builtins.PyCapsule run_rattle1(self : rosetta.protocols.md.Rattle, dt : float, xyz : rosetta.utility.vector1_double, vel : rosetta.utility.vector1_double, mass : rosetta.utility.vector1_double) -> NoneType run_rattle2(...) from builtins.PyCapsule run_rattle2(self : rosetta.protocols.md.Rattle, dt : float, xyz : rosetta.utility.vector1_double, vel : rosetta.utility.vector1_double, mass : rosetta.utility.vector1_double) -> NoneType   class Thermostat(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : rosetta.protocols.md.Thermostat, temperature0 : float, ndof : int) -> NoneType   2. __init__(self : rosetta.protocols.md.Thermostat, temperature0 : float, tau : float, ndof : int) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. get_temperature(...) from builtins.PyCapsule get_temperature(self : rosetta.protocols.md.Thermostat, vel : rosetta.utility.vector1_double, mass : rosetta.utility.vector1_double) -> float nstep_per_update(...) from builtins.PyCapsule nstep_per_update(rosetta.protocols.md.Thermostat) -> int rescale(...) from builtins.PyCapsule rescale(self : rosetta.protocols.md.Thermostat, vel : rosetta.utility.vector1_double, dt : float, mass : rosetta.utility.vector1_double) -> NoneType