Bindings for protocols::loops::loops_definers namespace

Classes
		builtins.object LoopsDefiner LoopsDatabaseDefiner LoopsExplicitDefiner LoopsFileDefiner LoopsDefinerCreator LoopsDatabaseDefinerCreator LoopsExplicitDefinerCreator LoopsFileDefinerCreator rosetta.protocols.jd2.parser.DataLoader(builtins.object) LoopsDefinerLoader rosetta.protocols.jd2.parser.DataLoaderCreator(builtins.object) LoopsDefinerLoaderCreator rosetta.utility.SingletonBase_protocols_loops_loops_definers_LoopsDefinerFactory_t(builtins.object) LoopsDefinerFactory   class LoopsDatabaseDefiner(LoopsDefiner)     @ details given a database table with the following schema, defining a single loop per row   CREATE TABLE loops (  tag TEXT,  start INTEGER,  stop INTEGER,  cut INTEGER,  skip_rate REAL,  extended BOOLEAN);    return all loops associated with the job distributor input tag  Note: you can specify a different table using the 'database_table' field    Note: if you would like to query the database for loops  differently, you can either pre-query the table and store it, or  extend, subclass, or create a different LoopsDefiner class.     Method resolution order: LoopsDatabaseDefiner LoopsDefiner builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.loops.loops_definers.LoopsDatabaseDefiner) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.loops.loops_definers.LoopsDatabaseDefiner,  : rosetta.core.pose.Pose) -> rosetta.utility.vector1_protocols_loops_SerializedLoop assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.loops.loops_definers.LoopsDatabaseDefiner,  : rosetta.protocols.loops.loops_definers.LoopsDatabaseDefiner) -> rosetta.protocols.loops.loops_definers.LoopsDatabaseDefiner clone(...) from builtins.PyCapsule clone(rosetta.protocols.loops.loops_definers.LoopsDatabaseDefiner) -> rosetta.protocols.loops.loops_definers.LoopsDefiner   Create another loops definer of the type matching the most-derived  version of the class. parse_my_tag(...) from builtins.PyCapsule parse_my_tag(self : rosetta.protocols.loops.loops_definers.LoopsDatabaseDefiner, tag : rosetta.utility.tag.Tag, data : rosetta.basic.datacache.DataMap,  : rosetta.core.pose.Pose) -> NoneType   Used to parse an xml-like tag to load parameters and properties.   class LoopsDatabaseDefinerCreator(LoopsDefinerCreator)     creator for the LoopsDatabaseDefiner class     Method resolution order: LoopsDatabaseDefinerCreator LoopsDefinerCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.loops.loops_definers.LoopsDatabaseDefinerCreator,  : rosetta.protocols.loops.loops_definers.LoopsDatabaseDefinerCreator) -> rosetta.protocols.loops.loops_definers.LoopsDatabaseDefinerCreator create_loops_definer(...) from builtins.PyCapsule create_loops_definer(rosetta.protocols.loops.loops_definers.LoopsDatabaseDefinerCreator) -> rosetta.protocols.loops.loops_definers.LoopsDefiner type_name(...) from builtins.PyCapsule type_name(rosetta.protocols.loops.loops_definers.LoopsDatabaseDefinerCreator) -> str   class LoopsDefiner(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(rosetta.protocols.loops.loops_definers.LoopsDefiner) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.loops.loops_definers.LoopsDefiner,  : rosetta.core.pose.Pose) -> rosetta.utility.vector1_protocols_loops_SerializedLoop assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.loops.loops_definers.LoopsDefiner,  : rosetta.protocols.loops.loops_definers.LoopsDefiner) -> rosetta.protocols.loops.loops_definers.LoopsDefiner clone(...) from builtins.PyCapsule clone(rosetta.protocols.loops.loops_definers.LoopsDefiner) -> rosetta.protocols.loops.loops_definers.LoopsDefiner   Create another loops definer of the type matching the most-derived  version of the class. parse_my_tag(...) from builtins.PyCapsule parse_my_tag(self : rosetta.protocols.loops.loops_definers.LoopsDefiner,  : rosetta.utility.tag.Tag,  : rosetta.basic.datacache.DataMap,  : rosetta.core.pose.Pose) -> NoneType   Used to parse an xml-like tag to load a SerializedLoopLists data structure into the pose.   class LoopsDefinerCreator(builtins.object)     creator for the LoopsDefiner class     Methods defined here: __init__(...) from builtins.PyCapsule __init__(rosetta.protocols.loops.loops_definers.LoopsDefinerCreator) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.loops.loops_definers.LoopsDefinerCreator,  : rosetta.protocols.loops.loops_definers.LoopsDefinerCreator) -> rosetta.protocols.loops.loops_definers.LoopsDefinerCreator create_loops_definer(...) from builtins.PyCapsule create_loops_definer(rosetta.protocols.loops.loops_definers.LoopsDefinerCreator) -> rosetta.protocols.loops.loops_definers.LoopsDefiner type_name(...) from builtins.PyCapsule type_name(rosetta.protocols.loops.loops_definers.LoopsDefinerCreator) -> str   class LoopsDefinerFactory(rosetta.utility.SingletonBase_protocols_loops_loops_definers_LoopsDefinerFactory_t)     Create LoopsDefiner Reporters     Method resolution order: LoopsDefinerFactory rosetta.utility.SingletonBase_protocols_loops_loops_definers_LoopsDefinerFactory_t builtins.object Methods defined here: __init__(self, /, *args, **kwargs) Initialize self.  See help(type(self)) for accurate signature. __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. create_loops_definer(...) from builtins.PyCapsule create_loops_definer(self : rosetta.protocols.loops.loops_definers.LoopsDefinerFactory, type_name : str) -> rosetta.protocols.loops.loops_definers.LoopsDefiner factory_register(...) from builtins.PyCapsule factory_register(self : rosetta.protocols.loops.loops_definers.LoopsDefinerFactory,  : rosetta.protocols.loops.loops_definers.LoopsDefinerCreator) -> NoneType get_all_loops_definer_names(...) from builtins.PyCapsule get_all_loops_definer_names(rosetta.protocols.loops.loops_definers.LoopsDefinerFactory) -> rosetta.utility.vector1_std_string has_type(...) from builtins.PyCapsule has_type(self : rosetta.protocols.loops.loops_definers.LoopsDefinerFactory,  : str) -> bool Methods inherited from rosetta.utility.SingletonBase_protocols_loops_loops_definers_LoopsDefinerFactory_t: get_instance(...) from builtins.PyCapsule get_instance() -> protocols::loops::loops_definers::LoopsDefinerFactory   class LoopsDefinerLoader(rosetta.protocols.jd2.parser.DataLoader)     A class for loading Loops data into the XML parser's basic::datacache::DataMap.     Method resolution order: LoopsDefinerLoader rosetta.protocols.jd2.parser.DataLoader builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.loops.loops_definers.LoopsDefinerLoader,  : rosetta.protocols.loops.loops_definers.LoopsDefinerLoader) -> rosetta.protocols.loops.loops_definers.LoopsDefinerLoader load_data(...) from builtins.PyCapsule load_data(self : rosetta.protocols.loops.loops_definers.LoopsDefinerLoader, pose : rosetta.core.pose.Pose, tag : rosetta.utility.tag.Tag, data : rosetta.basic.datacache.DataMap) -> NoneType   The LoopsDefinerLoader will load named task operations into the basic::datacache::DataMap   class LoopsDefinerLoaderCreator(rosetta.protocols.jd2.parser.DataLoaderCreator)       Method resolution order: LoopsDefinerLoaderCreator rosetta.protocols.jd2.parser.DataLoaderCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.loops.loops_definers.LoopsDefinerLoaderCreator,  : rosetta.protocols.loops.loops_definers.LoopsDefinerLoaderCreator) -> rosetta.protocols.loops.loops_definers.LoopsDefinerLoaderCreator create_loader(...) from builtins.PyCapsule create_loader(rosetta.protocols.loops.loops_definers.LoopsDefinerLoaderCreator) -> rosetta.protocols.jd2.parser.DataLoader keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.loops.loops_definers.LoopsDefinerLoaderCreator) -> str   class LoopsExplicitDefiner(LoopsDefiner)       Method resolution order: LoopsExplicitDefiner LoopsDefiner builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.loops.loops_definers.LoopsExplicitDefiner) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.loops.loops_definers.LoopsExplicitDefiner,  : rosetta.core.pose.Pose) -> rosetta.utility.vector1_protocols_loops_SerializedLoop assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.loops.loops_definers.LoopsExplicitDefiner,  : rosetta.protocols.loops.loops_definers.LoopsExplicitDefiner) -> rosetta.protocols.loops.loops_definers.LoopsExplicitDefiner clone(...) from builtins.PyCapsule clone(rosetta.protocols.loops.loops_definers.LoopsExplicitDefiner) -> rosetta.protocols.loops.loops_definers.LoopsDefiner   Create another loops definer of the type matching the most-derived  version of the class. parse_my_tag(...) from builtins.PyCapsule parse_my_tag(self : rosetta.protocols.loops.loops_definers.LoopsExplicitDefiner, tag : rosetta.utility.tag.Tag, data : rosetta.basic.datacache.DataMap,  : rosetta.core.pose.Pose) -> NoneType   class LoopsExplicitDefinerCreator(LoopsDefinerCreator)     creator for the LoopsExplicitDefiner class     Method resolution order: LoopsExplicitDefinerCreator LoopsDefinerCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.loops.loops_definers.LoopsExplicitDefinerCreator,  : rosetta.protocols.loops.loops_definers.LoopsExplicitDefinerCreator) -> rosetta.protocols.loops.loops_definers.LoopsExplicitDefinerCreator create_loops_definer(...) from builtins.PyCapsule create_loops_definer(rosetta.protocols.loops.loops_definers.LoopsExplicitDefinerCreator) -> rosetta.protocols.loops.loops_definers.LoopsDefiner type_name(...) from builtins.PyCapsule type_name(rosetta.protocols.loops.loops_definers.LoopsExplicitDefinerCreator) -> str   class LoopsFileDefiner(LoopsDefiner)       Method resolution order: LoopsFileDefiner LoopsDefiner builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.loops.loops_definers.LoopsFileDefiner) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.loops.loops_definers.LoopsFileDefiner,  : rosetta.core.pose.Pose) -> rosetta.utility.vector1_protocols_loops_SerializedLoop assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.loops.loops_definers.LoopsFileDefiner,  : rosetta.protocols.loops.loops_definers.LoopsFileDefiner) -> rosetta.protocols.loops.loops_definers.LoopsFileDefiner clone(...) from builtins.PyCapsule clone(rosetta.protocols.loops.loops_definers.LoopsFileDefiner) -> rosetta.protocols.loops.loops_definers.LoopsDefiner   Create another loops definer of the type matching the most-derived  version of the class. parse_my_tag(...) from builtins.PyCapsule parse_my_tag(self : rosetta.protocols.loops.loops_definers.LoopsFileDefiner, tag : rosetta.utility.tag.Tag, data : rosetta.basic.datacache.DataMap,  : rosetta.core.pose.Pose) -> NoneType   Used to parse an xml-like tag to load parameters and properties.   class LoopsFileDefinerCreator(LoopsDefinerCreator)     creator for the LoopsFileDefiner class     Method resolution order: LoopsFileDefinerCreator LoopsDefinerCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.loops.loops_definers.LoopsFileDefinerCreator,  : rosetta.protocols.loops.loops_definers.LoopsFileDefinerCreator) -> rosetta.protocols.loops.loops_definers.LoopsFileDefinerCreator create_loops_definer(...) from builtins.PyCapsule create_loops_definer(rosetta.protocols.loops.loops_definers.LoopsFileDefinerCreator) -> rosetta.protocols.loops.loops_definers.LoopsDefiner type_name(...) from builtins.PyCapsule type_name(rosetta.protocols.loops.loops_definers.LoopsFileDefinerCreator) -> str

Functions
		load_loop_definitions(...) method of builtins.PyCapsule instance load_loop_definitions(tag : rosetta.utility.tag.Tag, data : rosetta.basic.datacache.DataMap, pose : rosetta.core.pose.Pose) -> rosetta.protocols.loops.Loops