Bindings for protocols::kinematic_closure::solution_pickers namespace

Classes
		builtins.object SolutionPicker FilteredSolutions RandomSolutions   class FilteredSolutions(SolutionPicker)     Apply rama and bump checks to quickly filter out bad solutions.     The rama check only considers the pivot torsions, since it is assumed that the non-pivot torsions were set as desired.  This check employs a Monte Carlo acceptance step, which means that the pivot torsions will really be sampled from a rama distribution (ignoring the inherent geometric biases in the closure algorithm) when this check is enabled. However, note that the rama distribution will be double-counted if the score function also contains a rama term, which it usually does.   The bump check checks for clashes between the N, CA, C, O, and CB atoms of every residue in the loop versus every other residue in the protein.  This filter is O(n^2) and is much slower than the constant time rama check.  The rama check is also very selective; it usually filters out more than 90% of proposed solutions.  For these reasons, it is important that the rama check be run before the bump check.  You can disable the rama check, but this would probably lead to a noticeable drop in performance.     Method resolution order: FilteredSolutions SolutionPicker builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   doc   2. __init__(handle, bool) -> NoneType   doc   3. __init__(handle, bool, bool) -> NoneType   doc   4. __init__(self : handle, check_rama : bool, check_overlap : bool, be_lenient : bool) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. be_lenient(...) from builtins.PyCapsule be_lenient(rosetta.protocols.kinematic_closure.solution_pickers.FilteredSolutions) -> NoneType   Make the bump check more lenient. check_overlap(...) from builtins.PyCapsule check_overlap(rosetta.protocols.kinematic_closure.solution_pickers.FilteredSolutions) -> NoneType   Enable the bump check. check_rama(...) from builtins.PyCapsule check_rama(rosetta.protocols.kinematic_closure.solution_pickers.FilteredSolutions) -> NoneType   Enable the rama check. dont_be_lenient(...) from builtins.PyCapsule dont_be_lenient(rosetta.protocols.kinematic_closure.solution_pickers.FilteredSolutions) -> NoneType   Make the bump check more lenient. dont_check_overlap(...) from builtins.PyCapsule dont_check_overlap(rosetta.protocols.kinematic_closure.solution_pickers.FilteredSolutions) -> NoneType   Disable the bump check. dont_check_rama(...) from builtins.PyCapsule dont_check_rama(rosetta.protocols.kinematic_closure.solution_pickers.FilteredSolutions) -> NoneType   Disable the rama check. pick_and_apply(...) from builtins.PyCapsule pick_and_apply(self : rosetta.protocols.kinematic_closure.solution_pickers.FilteredSolutions, pose : rosetta.core.pose.Pose, solutions : rosetta.utility.vector1_std_shared_ptr_const_protocols_kinematic_closure_ClosureSolution_t) -> bool   SolutionPicker::pick_and_apply   class RandomSolutions(SolutionPicker)     Pick a completely random solution to return.     Method resolution order: RandomSolutions SolutionPicker builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. pick_and_apply(...) from builtins.PyCapsule pick_and_apply(self : rosetta.protocols.kinematic_closure.solution_pickers.RandomSolutions, pose : rosetta.core.pose.Pose, solutions : rosetta.utility.vector1_std_shared_ptr_const_protocols_kinematic_closure_ClosureSolution_t) -> bool   SolutionPicker::pick_and_apply   class SolutionPicker(builtins.object)     Base class for all the solution picking algorithms.     Methods defined here: __init__(...) from builtins.PyCapsule __init__(rosetta.protocols.kinematic_closure.solution_pickers.SolutionPicker) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. pick_and_apply(...) from builtins.PyCapsule pick_and_apply(self : rosetta.protocols.kinematic_closure.solution_pickers.SolutionPicker, pose : rosetta.core.pose.Pose, solutions : rosetta.utility.vector1_std_shared_ptr_const_protocols_kinematic_closure_ClosureSolution_t) -> bool   Pick a solution from the given list, and if apply it to the given  pose.  If no solution is satisfactory, don't do anything.