| | |
- builtins.object
-
- GeneralizedKICselector
- selector_type
class GeneralizedKICselector(builtins.object) |
| |
////////////////////////////////////////////////////////////////////
|
| |
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(rosetta.protocols.generalized_kinematic_closure.selector.GeneralizedKICselector) -> NoneType
2. __init__(self : rosetta.protocols.generalized_kinematic_closure.selector.GeneralizedKICselector, src : rosetta.protocols.generalized_kinematic_closure.selector.GeneralizedKICselector) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- apply(...) from builtins.PyCapsule
- apply(self : rosetta.protocols.generalized_kinematic_closure.selector.GeneralizedKICselector, pose : rosetta.core.pose.Pose, original_pose : rosetta.core.pose.Pose, residue_map : rosetta.utility.vector1_std_pair_unsigned_long_unsigned_long_t, tail_residue_map : rosetta.utility.vector1_std_pair_unsigned_long_unsigned_long_t, atomlist : rosetta.utility.vector1_std_pair_core_id_AtomID_numeric_xyzVector_double_t, torsions : rosetta.utility.vector1_utility_vector1_utility_vector1_double_std_allocator_double_std_allocator_utility_vector1_double_std_allocator_double_t, bondangles : rosetta.utility.vector1_utility_vector1_utility_vector1_double_std_allocator_double_std_allocator_utility_vector1_double_std_allocator_double_t, bondlengths : rosetta.utility.vector1_utility_vector1_utility_vector1_double_std_allocator_double_std_allocator_utility_vector1_double_std_allocator_double_t, nsol_for_attempt : rosetta.utility.vector1_unsigned_long, total_solutions : int, solutions : rosetta.utility.vector1_std_shared_ptr_const_core_pose_Pose_t, low_memory_mode : bool, energies_for_solution : rosetta.utility.vector1_double) -> int
Applies a selector type to choose a solution, and returns index of chosen solution.
Returns zero if some error occurs. Should always return a nonzero integer, though.
-- The loop to be closed.
-- The original pose. Can be used for reference by selectors.
-- Mapping of (loop residue, original pose residue).
-- Mapping of (tail residue index in pose, tail residue index in original_pose).
-- The list of (AtomID, original XYZ coordinates of atoms) representing the chain that was closed.
-- Matrix of [closure attempt #][solution #][torsion #] with torsion values for each torsion angle in the chain. A selector will pick one solution.
-- Matrix of [closure attempt #][solution #][angle #] with bond angle values for each bond angle in the chain. A selector will pick one solution.
-- Matrix of [closure attempt #][solution #][bondlength #] with bond length for each bond in the chain. A selector will pick one solution.
-- List of the number of solutions for each attempt.
-- Total number of solutions found.
-- Reference to vector of owning pointers of poses representing solutions, with pre-selection filters already applied.
-- Are we running in low memory mode (where vectors of torsions/bondangles/bondlengths are used to store solutions), or default mode (where full poses are stored)?
-- Vector of energies for each solution. Used only in low-memory mode.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.generalized_kinematic_closure.selector.GeneralizedKICselector, : rosetta.protocols.generalized_kinematic_closure.selector.GeneralizedKICselector) -> rosetta.protocols.generalized_kinematic_closure.selector.GeneralizedKICselector
- clone(...) from builtins.PyCapsule
- clone(rosetta.protocols.generalized_kinematic_closure.selector.GeneralizedKICselector) -> rosetta.protocols.generalized_kinematic_closure.selector.GeneralizedKICselector
- get_boltzmann_temp(...) from builtins.PyCapsule
- get_boltzmann_temp(rosetta.protocols.generalized_kinematic_closure.selector.GeneralizedKICselector) -> float
Returns the Boltzmann temperature used by this selector.
- get_name(...) from builtins.PyCapsule
- get_name(rosetta.protocols.generalized_kinematic_closure.selector.GeneralizedKICselector) -> str
Returns the name of this class.
- get_selector_type(...) from builtins.PyCapsule
- get_selector_type(rosetta.protocols.generalized_kinematic_closure.selector.GeneralizedKICselector) -> rosetta.protocols.generalized_kinematic_closure.selector.selector_type
Returns the selector type for this selector.
- get_selector_type_by_name(...) from builtins.PyCapsule
- get_selector_type_by_name(self : rosetta.protocols.generalized_kinematic_closure.selector.GeneralizedKICselector, selectorname : str) -> rosetta.protocols.generalized_kinematic_closure.selector.selector_type
Given the name of a selector type, return the selector type enum. Returns unknown_selector if not recognized.
- get_selector_type_name(...) from builtins.PyCapsule
- get_selector_type_name(self : rosetta.protocols.generalized_kinematic_closure.selector.GeneralizedKICselector, selector_type : int) -> str
Given a selector type, return its name. Returns "unknown_selector" if not recognized.
- scorefunction(...) from builtins.PyCapsule
- scorefunction(rosetta.protocols.generalized_kinematic_closure.selector.GeneralizedKICselector) -> rosetta.core.scoring.ScoreFunction
Get the scorefunction used by this selector.
- set_boltzmann_temp(...) from builtins.PyCapsule
- set_boltzmann_temp(self : rosetta.protocols.generalized_kinematic_closure.selector.GeneralizedKICselector, temp : float) -> NoneType
Set the Boltzmann temperature used by this selector.
- set_scorefunction(...) from builtins.PyCapsule
- set_scorefunction(self : rosetta.protocols.generalized_kinematic_closure.selector.GeneralizedKICselector, sfxn : rosetta.core.scoring.ScoreFunction) -> NoneType
Set the scorefunction used by this selector.
- set_selector_type(...) from builtins.PyCapsule
- set_selector_type(*args, **kwargs)
Overloaded function.
1. set_selector_type(self : rosetta.protocols.generalized_kinematic_closure.selector.GeneralizedKICselector, stype : rosetta.protocols.generalized_kinematic_closure.selector.selector_type) -> NoneType
Sets the selector type for this selector.
2. set_selector_type(self : rosetta.protocols.generalized_kinematic_closure.selector.GeneralizedKICselector, stypename : str) -> NoneType
Sets the selector type for this selector by name.
|
class selector_type(builtins.object) |
| | |
Methods defined here:
- __eq__(...) from builtins.PyCapsule
- __eq__(rosetta.protocols.generalized_kinematic_closure.selector.selector_type, rosetta.protocols.generalized_kinematic_closure.selector.selector_type) -> bool
- __hash__(...) from builtins.PyCapsule
- __hash__(rosetta.protocols.generalized_kinematic_closure.selector.selector_type) -> int
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(rosetta.protocols.generalized_kinematic_closure.selector.selector_type, int) -> NoneType
2. __init__(rosetta.protocols.generalized_kinematic_closure.selector.selector_type, int) -> NoneType
- __int__(...) from builtins.PyCapsule
- __int__(rosetta.protocols.generalized_kinematic_closure.selector.selector_type) -> int
- __ne__(...) from builtins.PyCapsule
- __ne__(rosetta.protocols.generalized_kinematic_closure.selector.selector_type, rosetta.protocols.generalized_kinematic_closure.selector.selector_type) -> bool
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- __repr__(...) from builtins.PyCapsule
- __repr__(rosetta.protocols.generalized_kinematic_closure.selector.selector_type) -> str
Data and other attributes defined here:
- boltzmann_energy_selector = selector_type.boltzmann_energy_selector
- end_of_selector_list = selector_type.end_of_selector_list
- lowest_delta_torsion_selector = selector_type.lowest_delta_torsion_selector
- lowest_energy_selector = selector_type.lowest_energy_selector
- lowest_rmsd_selector = selector_type.lowest_rmsd_selector
- no_selector = selector_type.no_selector
- random_selector = selector_type.random_selector
- unknown_selector = selector_type.end_of_selector_list
| |