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- builtins.object
-
- GeneralizedKICfilter
- filter_type
class GeneralizedKICfilter(builtins.object) |
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Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter) -> NoneType
2. __init__(self : rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter, src : rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- add_filter_param(...) from builtins.PyCapsule
- add_filter_param(*args, **kwargs)
Overloaded function.
1. add_filter_param(self : rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter, param_name : str, value : float) -> NoneType
Add a real-valued filter parameter.
2. add_filter_param(self : rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter, param_name : str, value : int) -> NoneType
Add a integer-valued filter parameter.
3. add_filter_param(self : rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter, param_name : str, value : bool) -> NoneType
Add a Boolean-valued filter parameter.
4. add_filter_param(self : rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter, param_name : str, value : str) -> NoneType
Add a string-valued filter parameter.
- apply(...) from builtins.PyCapsule
- apply(self : rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter, original_pose : rosetta.core.pose.Pose, loop_pose : rosetta.core.pose.Pose, residue_map : rosetta.utility.vector1_std_pair_unsigned_long_unsigned_long_t, tail_residue_map : rosetta.utility.vector1_std_pair_unsigned_long_unsigned_long_t, atomlist : rosetta.utility.vector1_std_pair_core_id_AtomID_numeric_xyzVector_double_t, torsions : rosetta.utility.vector1_double, bondangles : rosetta.utility.vector1_double, bondlengths : rosetta.utility.vector1_double) -> bool
Apply this filter to ONE of the kinematic closure solutions produced by the bridgeObjects function,
and return pass or fail.
-- The full, initial pose.
-- A pose consisting of just the loop to be closed.
-- The mapping of (residue index in loop_pose, residue index in original_pose).
-- The mapping of (tail residue index in loop_pose, tail residue index in original_pose).
-- A list of atoms making the chain that was closed by bridgeObjects, with residue indices corresponding to loop_pose.
-- A vector of dihedral angles that the bridgeObjects function spat out.
-- A vector of bond angles that the bridgeObjects function spat out.
-- A vector of bond lengths that the bridgeObjects function spat out.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter, : rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter) -> rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter
- attach_boinc_ghost_observer(...) from builtins.PyCapsule
- attach_boinc_ghost_observer(rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter) -> bool
Gets whether we are attaching a BOINC "ghost" pose observer.
Only does anything in the BOINC graphics build.
- binname(...) from builtins.PyCapsule
- binname(rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter) -> str
Get the bin name for this filter.
Only used by some filters.
- clone(...) from builtins.PyCapsule
- clone(rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter) -> rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter
- get_filter_param(...) from builtins.PyCapsule
- get_filter_param(*args, **kwargs)
Overloaded function.
1. get_filter_param(self : rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter, param_name : str, outvalue : float) -> bool
Get a real-valued filter parameter.
Returns false if the parameter couldn't be found.
2. get_filter_param(self : rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter, param_name : str, outvalue : int) -> bool
Get a integer-valued filter parameter.
Returns false if the parameter couldn't be found.
3. get_filter_param(self : rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter, param_name : str, outvalue : bool) -> bool
Get a Boolean-valued filter parameter.
Returns false if the parameter couldn't be found.
4. get_filter_param(self : rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter, param_name : str, outvalue : str) -> bool
Get a string-valued filter parameter.
Returns false if the parameter couldn't be found.
- get_filter_type_by_name(...) from builtins.PyCapsule
- get_filter_type_by_name(self : rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter, filtername : str) -> rosetta.protocols.generalized_kinematic_closure.filter.filter_type
Given the name of a filter type, return the filter type enum. Returns unknown_filter if not recognized.
- get_filter_type_name(...) from builtins.PyCapsule
- get_filter_type_name(self : rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter, filter_type : int) -> str
Given a filter type, return its name. Returns "unknown_filter" if not recognized.
- get_name(...) from builtins.PyCapsule
- get_name(rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter) -> str
Returns the name of this class.
- get_this_filter_type_name(...) from builtins.PyCapsule
- get_this_filter_type_name(rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter) -> str
Gets the filter type name for THIS filter.
- load_bin_params(...) from builtins.PyCapsule
- load_bin_params(self : rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter, bin_params_file : str) -> NoneType
Initializes the BinTransitionCalculator object and loads a bin_params file.
- rama_cutoff_energy(...) from builtins.PyCapsule
- rama_cutoff_energy(rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter) -> float
Get the alpha_aa_rama_check filter's rama term cutoff energy.
Only used by alpha_aa_rama_check filter.
- resnum(...) from builtins.PyCapsule
- resnum(rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter) -> int
Get the residue number that this filter acts on.
Only used by some filters.
- set_attach_boinc_ghost_observer(...) from builtins.PyCapsule
- set_attach_boinc_ghost_observer(self : rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter, setting : bool) -> NoneType
Sets whether we are attaching a BOINC "ghost" pose observer.
Only does anything in the BOINC graphics build.
- set_binname(...) from builtins.PyCapsule
- set_binname(self : rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter, name_in : str) -> NoneType
Set the bin name for this filter.
Only used by some filters.
- set_filter_type(...) from builtins.PyCapsule
- set_filter_type(*args, **kwargs)
Overloaded function.
1. set_filter_type(self : rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter, ftype : rosetta.protocols.generalized_kinematic_closure.filter.filter_type) -> NoneType
Sets the filter type for this filter.
2. set_filter_type(self : rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter, ftypename : str) -> NoneType
Sets the filter type for this filter by name.
- set_rama_cutoff_energy(...) from builtins.PyCapsule
- set_rama_cutoff_energy(self : rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter, val : float) -> NoneType
Set the alpha_aa_rama_check filter's rama term cutoff energy.
Only used by alpha_aa_rama_check filter.
- set_resnum(...) from builtins.PyCapsule
- set_resnum(self : rosetta.protocols.generalized_kinematic_closure.filter.GeneralizedKICfilter, val : int) -> NoneType
Set the residue number that this filter acts on.
Only used by some filters.
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class filter_type(builtins.object) |
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Methods defined here:
- __eq__(...) from builtins.PyCapsule
- __eq__(rosetta.protocols.generalized_kinematic_closure.filter.filter_type, rosetta.protocols.generalized_kinematic_closure.filter.filter_type) -> bool
- __hash__(...) from builtins.PyCapsule
- __hash__(rosetta.protocols.generalized_kinematic_closure.filter.filter_type) -> int
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(rosetta.protocols.generalized_kinematic_closure.filter.filter_type, int) -> NoneType
2. __init__(rosetta.protocols.generalized_kinematic_closure.filter.filter_type, int) -> NoneType
- __int__(...) from builtins.PyCapsule
- __int__(rosetta.protocols.generalized_kinematic_closure.filter.filter_type) -> int
- __ne__(...) from builtins.PyCapsule
- __ne__(rosetta.protocols.generalized_kinematic_closure.filter.filter_type, rosetta.protocols.generalized_kinematic_closure.filter.filter_type) -> bool
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- __repr__(...) from builtins.PyCapsule
- __repr__(rosetta.protocols.generalized_kinematic_closure.filter.filter_type) -> str
Data and other attributes defined here:
- alpha_aa_rama_check = filter_type.alpha_aa_rama_check
- atom_pair_distance = filter_type.atom_pair_distance
- backbone_bin = filter_type.backbone_bin
- end_of_filter_list = filter_type.end_of_filter_list
- loop_bump_check = filter_type.loop_bump_check
- no_filter = filter_type.no_filter
- unknown_filter = filter_type.end_of_filter_list
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