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- builtins.object
-
- ABEGO_SS_Map
- QuotaConfig
-
- ABEGO_SS_Config
- rosetta.protocols.frag_picker.CandidatesCollector(builtins.object)
-
- QuotaCollector
- QuotaPool
-
- ABEGO_SS_Pool
- SecondaryStructurePool
- rosetta.protocols.frag_picker.FragmentSelectingRule(builtins.object)
-
- QuotaSelector
class ABEGO_SS_Config(QuotaConfig) |
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read a config file for quota selector
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- Method resolution order:
- ABEGO_SS_Config
- QuotaConfig
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(self : rosetta.protocols.frag_picker.quota.ABEGO_SS_Config, config_file_name : str) -> NoneType
2. __init__(self : rosetta.protocols.frag_picker.quota.ABEGO_SS_Config, : rosetta.protocols.frag_picker.quota.ABEGO_SS_Config) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.frag_picker.quota.ABEGO_SS_Config, : rosetta.protocols.frag_picker.quota.ABEGO_SS_Config) -> rosetta.protocols.frag_picker.quota.ABEGO_SS_Config
- get_pool_bins(...) from builtins.PyCapsule
- get_pool_bins(self : rosetta.protocols.frag_picker.quota.ABEGO_SS_Config, pool_id : int) -> rosetta.utility.vector1_std_pair_unsigned_long_unsigned_long_t
- highest_probability(...) from builtins.PyCapsule
- highest_probability(self : rosetta.protocols.frag_picker.quota.ABEGO_SS_Config, : int) -> float
- most_probable_bin(...) from builtins.PyCapsule
- most_probable_bin(self : rosetta.protocols.frag_picker.quota.ABEGO_SS_Config, : int) -> int
- n_columns(...) from builtins.PyCapsule
- n_columns(rosetta.protocols.frag_picker.quota.ABEGO_SS_Config) -> int
- n_rows(...) from builtins.PyCapsule
- n_rows(rosetta.protocols.frag_picker.quota.ABEGO_SS_Config) -> int
- probability(...) from builtins.PyCapsule
- probability(self : rosetta.protocols.frag_picker.quota.ABEGO_SS_Config, seq_pos : int, bin : int) -> float
- size(...) from builtins.PyCapsule
- size(rosetta.protocols.frag_picker.quota.ABEGO_SS_Config) -> int
- source_file_name(...) from builtins.PyCapsule
- source_file_name(rosetta.protocols.frag_picker.quota.ABEGO_SS_Config) -> str
Methods inherited from QuotaConfig:
- count_pools(...) from builtins.PyCapsule
- count_pools(rosetta.protocols.frag_picker.quota.QuotaConfig) -> int
how many pools have been defined in a config file
- get_fraction(...) from builtins.PyCapsule
- get_fraction(*args, **kwargs)
Overloaded function.
1. get_fraction(self : rosetta.protocols.frag_picker.quota.QuotaConfig, pool_id : int) -> float
returns a fraction for a given pool
2. get_fraction(self : rosetta.protocols.frag_picker.quota.QuotaConfig, pool_name : str) -> float
returns a fraction for a given pool
if the given string is not a valid name of a quota pool,
the method returns 0
- get_pool_name(...) from builtins.PyCapsule
- get_pool_name(self : rosetta.protocols.frag_picker.quota.QuotaConfig, pool_id : int) -> str
return a string id (name) assigned to a given pool
- is_valid_quota_pool_name(...) from builtins.PyCapsule
- is_valid_quota_pool_name(self : rosetta.protocols.frag_picker.quota.QuotaConfig, pool_name : str) -> bool
returns true if a config file defined a given pool name
- set_fraction(...) from builtins.PyCapsule
- set_fraction(self : rosetta.protocols.frag_picker.quota.QuotaConfig, pool_id : int, fraction : float) -> NoneType
returns a fraction for a given pool
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class ABEGO_SS_Map(builtins.object) |
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represents a single pool used by quota selector
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Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(self : rosetta.protocols.frag_picker.quota.ABEGO_SS_Map, : rosetta.utility.vector1_std_pair_unsigned_long_unsigned_long_t) -> NoneType
2. __init__(self : rosetta.protocols.frag_picker.quota.ABEGO_SS_Map, : rosetta.protocols.frag_picker.quota.ABEGO_SS_Map) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- abego_char(...) from builtins.PyCapsule
- abego_char(self : rosetta.protocols.frag_picker.quota.ABEGO_SS_Map, abego_bin : int) -> str
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.frag_picker.quota.ABEGO_SS_Map, : rosetta.protocols.frag_picker.quota.ABEGO_SS_Map) -> rosetta.protocols.frag_picker.quota.ABEGO_SS_Map
- check_status(...) from builtins.PyCapsule
- check_status(*args, **kwargs)
Overloaded function.
1. check_status(self : rosetta.protocols.frag_picker.quota.ABEGO_SS_Map, ss_type : str, abego_type : str) -> bool
2. check_status(self : rosetta.protocols.frag_picker.quota.ABEGO_SS_Map, ss_type : str, abego_type : int) -> bool
3. check_status(self : rosetta.protocols.frag_picker.quota.ABEGO_SS_Map, ss_type : int, abego_type : str) -> bool
4. check_status(self : rosetta.protocols.frag_picker.quota.ABEGO_SS_Map, bin_index : (int, int)) -> bool
- set_status(...) from builtins.PyCapsule
- set_status(self : rosetta.protocols.frag_picker.quota.ABEGO_SS_Map, bin_index : (int, int), new_status : bool) -> NoneType
- show_valid(...) from builtins.PyCapsule
- show_valid(rosetta.protocols.frag_picker.quota.ABEGO_SS_Map) -> str
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class ABEGO_SS_Pool(QuotaPool) |
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represents a single pool used by quota selector
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- Method resolution order:
- ABEGO_SS_Pool
- QuotaPool
- rosetta.protocols.frag_picker.CandidatesCollector
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(self : handle, : int, : str, : rosetta.utility.vector1_std_pair_unsigned_long_unsigned_long_t, : rosetta.utility.vector1_unsigned_long, : rosetta.utility.vector1_double, : float, : int, : int) -> NoneType
2. __init__(handle, rosetta.protocols.frag_picker.quota.ABEGO_SS_Pool) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- accepts(...) from builtins.PyCapsule
- accepts(self : rosetta.protocols.frag_picker.quota.ABEGO_SS_Pool, ss_type : str, abego_type : str) -> bool
- add(...) from builtins.PyCapsule
- add(self : rosetta.protocols.frag_picker.quota.ABEGO_SS_Pool, : (rosetta.protocols.frag_picker.FragmentCandidate, rosetta.protocols.frag_picker.scores.FragmentScoreMap)) -> bool
Insert a fragment candidate to the container
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.frag_picker.quota.ABEGO_SS_Pool, : rosetta.protocols.frag_picker.quota.ABEGO_SS_Pool) -> rosetta.protocols.frag_picker.quota.ABEGO_SS_Pool
- clear(...) from builtins.PyCapsule
- clear(rosetta.protocols.frag_picker.quota.ABEGO_SS_Pool) -> NoneType
removes all candidates from the container
- could_be_accepted(...) from builtins.PyCapsule
- could_be_accepted(self : rosetta.protocols.frag_picker.quota.ABEGO_SS_Pool, candidate : (rosetta.protocols.frag_picker.FragmentCandidate, rosetta.protocols.frag_picker.scores.FragmentScoreMap)) -> bool
- count_candidates(...) from builtins.PyCapsule
- count_candidates(*args, **kwargs)
Overloaded function.
1. count_candidates(self : rosetta.protocols.frag_picker.quota.ABEGO_SS_Pool, : int) -> int
Check how many candidates have been already collected for a given position
This is a very special case - collector will be used only for a given position.
Thus it returns the total number of inserted candidates, as count_candidates() does
2. count_candidates(rosetta.protocols.frag_picker.quota.ABEGO_SS_Pool) -> int
Check how many candidates have been already collected for all positions
- current_size(...) from builtins.PyCapsule
- current_size(rosetta.protocols.frag_picker.quota.ABEGO_SS_Pool) -> int
Says how many fragments are currently in this pool
- get_candidates(...) from builtins.PyCapsule
- get_candidates(self : rosetta.protocols.frag_picker.quota.ABEGO_SS_Pool, : int) -> rosetta.utility.vector1_std_pair_std_shared_ptr_protocols_frag_picker_FragmentCandidate_std_shared_ptr_protocols_frag_picker_scores_FragmentScoreMap_t
Returns all the candidate in this pool
- insert(...) from builtins.PyCapsule
- insert(self : rosetta.protocols.frag_picker.quota.ABEGO_SS_Pool, : int, collector : rosetta.protocols.frag_picker.CandidatesCollector) -> NoneType
Inserts candidates from another Collector for a give position in the query
Candidates may or may not get inserted depending on the candidate
- push(...) from builtins.PyCapsule
- push(self : rosetta.protocols.frag_picker.quota.ABEGO_SS_Pool, candidate : (rosetta.protocols.frag_picker.FragmentCandidate, rosetta.protocols.frag_picker.scores.FragmentScoreMap)) -> NoneType
Push a fragment candidate into the container
- query_length(...) from builtins.PyCapsule
- query_length(rosetta.protocols.frag_picker.quota.ABEGO_SS_Pool) -> int
Check the size of query sequence that this object knows.
This is a very special case - collector will be used only for a given position and it does NOT
know the tolal size. Thus it returns always 0
- quota_score(...) from builtins.PyCapsule
- quota_score(self : rosetta.protocols.frag_picker.quota.ABEGO_SS_Pool, candidate : (rosetta.protocols.frag_picker.FragmentCandidate, rosetta.protocols.frag_picker.scores.FragmentScoreMap)) -> float
- resize(...) from builtins.PyCapsule
- resize(self : rosetta.protocols.frag_picker.quota.ABEGO_SS_Pool, new_size : int) -> NoneType
- set_fraction(...) from builtins.PyCapsule
- set_fraction(self : rosetta.protocols.frag_picker.quota.ABEGO_SS_Pool, new_fraction : float) -> NoneType
- size_left(...) from builtins.PyCapsule
- size_left(rosetta.protocols.frag_picker.quota.ABEGO_SS_Pool) -> int
Says how many fragments can still be inserted into this pool
- total_size(...) from builtins.PyCapsule
- total_size(rosetta.protocols.frag_picker.quota.ABEGO_SS_Pool) -> int
Says how many fragments (in total) may fit into this pool
Methods inherited from QuotaPool:
- get_fraction(...) from builtins.PyCapsule
- get_fraction(rosetta.protocols.frag_picker.quota.QuotaPool) -> float
returns the fraction of this quota pool in the entire population of fragments
- get_pool_name(...) from builtins.PyCapsule
- get_pool_name(rosetta.protocols.frag_picker.quota.QuotaPool) -> str
returns the name assigned to this quota pool
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class QuotaCollector(rosetta.protocols.frag_picker.CandidatesCollector) |
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A base class for collecting fragments.
The purpose of a collector is to keep fragment candidates to the end
of vall processing. Then a selector will go through all the candidates stored
in a collector and select the final fragments
GrabAll collector for a possible implementation
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- Method resolution order:
- QuotaCollector
- rosetta.protocols.frag_picker.CandidatesCollector
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(self : handle, query_size : int, frag_size : int) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- add(...) from builtins.PyCapsule
- add(self : rosetta.protocols.frag_picker.quota.QuotaCollector, : (rosetta.protocols.frag_picker.FragmentCandidate, rosetta.protocols.frag_picker.scores.FragmentScoreMap)) -> bool
Insert a fragment candidate to the container
- add_pool(...) from builtins.PyCapsule
- add_pool(self : rosetta.protocols.frag_picker.quota.QuotaCollector, position : int, the_pool : rosetta.protocols.frag_picker.quota.QuotaPool) -> NoneType
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.frag_picker.quota.QuotaCollector, : rosetta.protocols.frag_picker.quota.QuotaCollector) -> rosetta.protocols.frag_picker.quota.QuotaCollector
- attach_secondary_structure_pools(...) from builtins.PyCapsule
- attach_secondary_structure_pools(self : rosetta.protocols.frag_picker.quota.QuotaCollector, : float, : rosetta.core.fragment.SecondaryStructure, : str, : int, : rosetta.utility.vector1_unsigned_long, : rosetta.utility.vector1_double, : int) -> NoneType
- clear(...) from builtins.PyCapsule
- clear(rosetta.protocols.frag_picker.quota.QuotaCollector) -> NoneType
removes all candidates from the container
- count_candidates(...) from builtins.PyCapsule
- count_candidates(*args, **kwargs)
Overloaded function.
1. count_candidates(self : rosetta.protocols.frag_picker.quota.QuotaCollector, : int) -> int
Check how many candidates have been already collected for a given position
2. count_candidates(rosetta.protocols.frag_picker.quota.QuotaCollector) -> int
Check how many candidates have been already collected for all positions
- count_pools(...) from builtins.PyCapsule
- count_pools(self : rosetta.protocols.frag_picker.quota.QuotaCollector, position : int) -> int
prints the number of quota pools for a given positio in query
- get_candidates(...) from builtins.PyCapsule
- get_candidates(self : rosetta.protocols.frag_picker.quota.QuotaCollector, position_in_query : int) -> rosetta.utility.vector1_std_pair_std_shared_ptr_protocols_frag_picker_FragmentCandidate_std_shared_ptr_protocols_frag_picker_scores_FragmentScoreMap_t
- get_pool(...) from builtins.PyCapsule
- get_pool(*args, **kwargs)
Overloaded function.
1. get_pool(self : rosetta.protocols.frag_picker.quota.QuotaCollector, position : int, pool_id : int) -> rosetta.protocols.frag_picker.quota.QuotaPool
2. get_pool(self : rosetta.protocols.frag_picker.quota.QuotaCollector, position : int, pool_id : int) -> rosetta.protocols.frag_picker.quota.QuotaPool
- insert(...) from builtins.PyCapsule
- insert(self : rosetta.protocols.frag_picker.quota.QuotaCollector, pos : int, collector : rosetta.protocols.frag_picker.CandidatesCollector) -> NoneType
Inserts candidates from another QuotaCollector for a give position in the query
Candidates may or may not get inserted depending on the candidate
- query_length(...) from builtins.PyCapsule
- query_length(rosetta.protocols.frag_picker.quota.QuotaCollector) -> int
Check the size of query sequence that this object knows.
This is mainly to be ale to check if it is the same as in the other parts of
fragment picking machinery.
- renormalize_quota_pools(...) from builtins.PyCapsule
- renormalize_quota_pools(rosetta.protocols.frag_picker.quota.QuotaCollector) -> NoneType
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class QuotaConfig(builtins.object) |
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read a config file for quota selector
|
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Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(self : rosetta.protocols.frag_picker.quota.QuotaConfig, config_file_name : str) -> NoneType
2. __init__(rosetta.protocols.frag_picker.quota.QuotaConfig) -> NoneType
3. __init__(self : rosetta.protocols.frag_picker.quota.QuotaConfig, : rosetta.protocols.frag_picker.quota.QuotaConfig) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.frag_picker.quota.QuotaConfig, : rosetta.protocols.frag_picker.quota.QuotaConfig) -> rosetta.protocols.frag_picker.quota.QuotaConfig
- count_pools(...) from builtins.PyCapsule
- count_pools(rosetta.protocols.frag_picker.quota.QuotaConfig) -> int
how many pools have been defined in a config file
- get_fraction(...) from builtins.PyCapsule
- get_fraction(*args, **kwargs)
Overloaded function.
1. get_fraction(self : rosetta.protocols.frag_picker.quota.QuotaConfig, pool_id : int) -> float
returns a fraction for a given pool
2. get_fraction(self : rosetta.protocols.frag_picker.quota.QuotaConfig, pool_name : str) -> float
returns a fraction for a given pool
if the given string is not a valid name of a quota pool,
the method returns 0
- get_pool_name(...) from builtins.PyCapsule
- get_pool_name(self : rosetta.protocols.frag_picker.quota.QuotaConfig, pool_id : int) -> str
return a string id (name) assigned to a given pool
- is_valid_quota_pool_name(...) from builtins.PyCapsule
- is_valid_quota_pool_name(self : rosetta.protocols.frag_picker.quota.QuotaConfig, pool_name : str) -> bool
returns true if a config file defined a given pool name
- set_fraction(...) from builtins.PyCapsule
- set_fraction(self : rosetta.protocols.frag_picker.quota.QuotaConfig, pool_id : int, fraction : float) -> NoneType
returns a fraction for a given pool
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class QuotaPool(rosetta.protocols.frag_picker.CandidatesCollector) |
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represents a single pool used by quota selector
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- Method resolution order:
- QuotaPool
- rosetta.protocols.frag_picker.CandidatesCollector
- builtins.object
Methods defined here:
- __init__(self, /, *args, **kwargs)
- Initialize self. See help(type(self)) for accurate signature.
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.frag_picker.quota.QuotaPool, : rosetta.protocols.frag_picker.quota.QuotaPool) -> rosetta.protocols.frag_picker.quota.QuotaPool
- clear(...) from builtins.PyCapsule
- clear(rosetta.protocols.frag_picker.quota.QuotaPool) -> NoneType
Makes the pool empty by removing all candidates
- could_be_accepted(...) from builtins.PyCapsule
- could_be_accepted(self : rosetta.protocols.frag_picker.quota.QuotaPool, : (rosetta.protocols.frag_picker.FragmentCandidate, rosetta.protocols.frag_picker.scores.FragmentScoreMap)) -> bool
- count_candidates(...) from builtins.PyCapsule
- count_candidates(rosetta.protocols.frag_picker.quota.QuotaPool) -> int
Check how many candidates have been already collected for a given position
This is a very special case - collector will be used only for a given position.
Thus it returns the total number of inserted candidates, as count_candidates() does
- current_size(...) from builtins.PyCapsule
- current_size(rosetta.protocols.frag_picker.quota.QuotaPool) -> int
Says how many fragments are currently in this pool
- get_fraction(...) from builtins.PyCapsule
- get_fraction(rosetta.protocols.frag_picker.quota.QuotaPool) -> float
returns the fraction of this quota pool in the entire population of fragments
- get_pool_name(...) from builtins.PyCapsule
- get_pool_name(rosetta.protocols.frag_picker.quota.QuotaPool) -> str
returns the name assigned to this quota pool
- push(...) from builtins.PyCapsule
- push(self : rosetta.protocols.frag_picker.quota.QuotaPool, : (rosetta.protocols.frag_picker.FragmentCandidate, rosetta.protocols.frag_picker.scores.FragmentScoreMap)) -> NoneType
Push a fragment candidate into the pool container
- quota_score(...) from builtins.PyCapsule
- quota_score(self : rosetta.protocols.frag_picker.quota.QuotaPool, candidate : (rosetta.protocols.frag_picker.FragmentCandidate, rosetta.protocols.frag_picker.scores.FragmentScoreMap)) -> float
provides the score for a candidate that was used to sort a quota pool
This base class returns the most recent total score for a fragment
- set_fraction(...) from builtins.PyCapsule
- set_fraction(self : rosetta.protocols.frag_picker.quota.QuotaPool, new_fraction : float) -> NoneType
Sets the fraction of this quota pool in the entire population of fragments
- size_left(...) from builtins.PyCapsule
- size_left(rosetta.protocols.frag_picker.quota.QuotaPool) -> int
Says how many fragments can still be inserted into this pool
- total_size(...) from builtins.PyCapsule
- total_size(rosetta.protocols.frag_picker.quota.QuotaPool) -> int
Says how many fragments (in total) may fit into this pool
Methods inherited from rosetta.protocols.frag_picker.CandidatesCollector:
- add(...) from builtins.PyCapsule
- add(self : rosetta.protocols.frag_picker.CandidatesCollector, : (rosetta.protocols.frag_picker.FragmentCandidate, rosetta.protocols.frag_picker.scores.FragmentScoreMap)) -> bool
Insert a fragment candidate to the container
- get_candidates(...) from builtins.PyCapsule
- get_candidates(self : rosetta.protocols.frag_picker.CandidatesCollector, position_in_query : int) -> rosetta.utility.vector1_std_pair_std_shared_ptr_protocols_frag_picker_FragmentCandidate_std_shared_ptr_protocols_frag_picker_scores_FragmentScoreMap_t
- insert(...) from builtins.PyCapsule
- insert(self : rosetta.protocols.frag_picker.CandidatesCollector, : int, : rosetta.protocols.frag_picker.CandidatesCollector) -> NoneType
inserts candidates from another collector
Candidates may or may not get inserted depending on the candidate and type of storage
- query_length(...) from builtins.PyCapsule
- query_length(rosetta.protocols.frag_picker.CandidatesCollector) -> int
Check the size of query sequence that this object knows.
This is mainly to be ale to check if it is the same as in the other parts of
fragment picking machinery.
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class SecondaryStructurePool(QuotaPool) |
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represents a single pool used by quota selector
|
| |
- Method resolution order:
- SecondaryStructurePool
- QuotaPool
- rosetta.protocols.frag_picker.CandidatesCollector
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(self : handle, : int, : str, : str, : rosetta.utility.vector1_unsigned_long, : rosetta.utility.vector1_double, : float, : int, : int) -> NoneType
2. __init__(handle, rosetta.protocols.frag_picker.quota.SecondaryStructurePool) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- add(...) from builtins.PyCapsule
- add(self : rosetta.protocols.frag_picker.quota.SecondaryStructurePool, : (rosetta.protocols.frag_picker.FragmentCandidate, rosetta.protocols.frag_picker.scores.FragmentScoreMap)) -> bool
Insert a fragment candidate to the container
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.frag_picker.quota.SecondaryStructurePool, : rosetta.protocols.frag_picker.quota.SecondaryStructurePool) -> rosetta.protocols.frag_picker.quota.SecondaryStructurePool
- clear(...) from builtins.PyCapsule
- clear(rosetta.protocols.frag_picker.quota.SecondaryStructurePool) -> NoneType
removes all candidates from the container
- could_be_accepted(...) from builtins.PyCapsule
- could_be_accepted(self : rosetta.protocols.frag_picker.quota.SecondaryStructurePool, : (rosetta.protocols.frag_picker.FragmentCandidate, rosetta.protocols.frag_picker.scores.FragmentScoreMap)) -> bool
- count_candidates(...) from builtins.PyCapsule
- count_candidates(*args, **kwargs)
Overloaded function.
1. count_candidates(self : rosetta.protocols.frag_picker.quota.SecondaryStructurePool, : int) -> int
Check how many candidates have been already collected for a given position
This is a very special case - collector will be used only for a given position.
Thus it returns the total number of inserted candidates, as count_candidates() does
2. count_candidates(rosetta.protocols.frag_picker.quota.SecondaryStructurePool) -> int
Check how many candidates have been already collected for all positions
- current_size(...) from builtins.PyCapsule
- current_size(rosetta.protocols.frag_picker.quota.SecondaryStructurePool) -> int
Says how many fragments are currently in this pool
- get_candidates(...) from builtins.PyCapsule
- get_candidates(self : rosetta.protocols.frag_picker.quota.SecondaryStructurePool, : int) -> rosetta.utility.vector1_std_pair_std_shared_ptr_protocols_frag_picker_FragmentCandidate_std_shared_ptr_protocols_frag_picker_scores_FragmentScoreMap_t
Returns all the candidate in this pool
- get_ss_type(...) from builtins.PyCapsule
- get_ss_type(rosetta.protocols.frag_picker.quota.SecondaryStructurePool) -> str
- insert(...) from builtins.PyCapsule
- insert(self : rosetta.protocols.frag_picker.quota.SecondaryStructurePool, : int, collector : rosetta.protocols.frag_picker.CandidatesCollector) -> NoneType
Inserts candidates from another Collector for a give position in the query
Candidates may or may not get inserted depending on the candidate
- push(...) from builtins.PyCapsule
- push(self : rosetta.protocols.frag_picker.quota.SecondaryStructurePool, candidate : (rosetta.protocols.frag_picker.FragmentCandidate, rosetta.protocols.frag_picker.scores.FragmentScoreMap)) -> NoneType
Push a fragment candidate into the container
- query_length(...) from builtins.PyCapsule
- query_length(rosetta.protocols.frag_picker.quota.SecondaryStructurePool) -> int
Check the size of query sequence that this object knows.
This is a very special case - collector will be used only for a given position and it does NOT
know the tolal size. Thus it returns always 0
- quota_score(...) from builtins.PyCapsule
- quota_score(self : rosetta.protocols.frag_picker.quota.SecondaryStructurePool, candidate : (rosetta.protocols.frag_picker.FragmentCandidate, rosetta.protocols.frag_picker.scores.FragmentScoreMap)) -> float
- resize(...) from builtins.PyCapsule
- resize(self : rosetta.protocols.frag_picker.quota.SecondaryStructurePool, new_size : int) -> NoneType
- set_fraction(...) from builtins.PyCapsule
- set_fraction(self : rosetta.protocols.frag_picker.quota.SecondaryStructurePool, new_fraction : float) -> NoneType
- size_left(...) from builtins.PyCapsule
- size_left(rosetta.protocols.frag_picker.quota.SecondaryStructurePool) -> int
Says how many fragments can still be inserted into this pool
- total_size(...) from builtins.PyCapsule
- total_size(rosetta.protocols.frag_picker.quota.SecondaryStructurePool) -> int
Says how many fragments (in total) may fit into this pool
Methods inherited from QuotaPool:
- get_fraction(...) from builtins.PyCapsule
- get_fraction(rosetta.protocols.frag_picker.quota.QuotaPool) -> float
returns the fraction of this quota pool in the entire population of fragments
- get_pool_name(...) from builtins.PyCapsule
- get_pool_name(rosetta.protocols.frag_picker.quota.QuotaPool) -> str
returns the name assigned to this quota pool
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