rosetta.protocols.forge.constraints
index
(built-in)

Bindings for protocols::forge::constraints namespace

 
Classes
       
rosetta.protocols.forge.remodel.RemodelConstraintGenerator(rosetta.protocols.moves.Mover)
InverseRotamersRCG
InvrotTreeRCG
NtoCConstraintGenerator
rosetta.protocols.moves.Mover(builtins.object)
RemoveRemodelCsts
rosetta.protocols.moves.MoverCreator(builtins.object)
InverseRotamersCstGeneratorCreator
InvrotTreeCstGeneratorCreator
NtoCConstraintGeneratorCreator
RemoveRemodelCstsCreator

 
class InverseRotamersCstGeneratorCreator(rosetta.protocols.moves.MoverCreator)
    
Method resolution order:
InverseRotamersCstGeneratorCreator
rosetta.protocols.moves.MoverCreator
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(handle) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.forge.constraints.InverseRotamersCstGeneratorCreator,  : rosetta.protocols.forge.constraints.InverseRotamersCstGeneratorCreator) -> rosetta.protocols.forge.constraints.InverseRotamersCstGeneratorCreator
create_mover(...) from builtins.PyCapsule
create_mover(rosetta.protocols.forge.constraints.InverseRotamersCstGeneratorCreator) -> rosetta.protocols.moves.Mover
keyname(...) from builtins.PyCapsule
keyname(rosetta.protocols.forge.constraints.InverseRotamersCstGeneratorCreator) -> str
mover_name(...) from builtins.PyCapsule
mover_name() -> str

 
class InverseRotamersRCG(rosetta.protocols.forge.remodel.RemodelConstraintGenerator)
    RemodelConstraintGenerator that creates AmbiguousConstraints for all positions
in a remodeled region towards a list of inverse rotamers. For every remodel position/inverse rotamer
pair, there will be one MultiConstraint consisting of three CoordinateConstraints. the three
coordinate constraints will be between:
1) remodel res N  - invrot N coords
2) remodel res Ca - invrot Ca coords
3) remodel res Cb - invrot Cb coords
All of these MultiConstraints are combined to form one AmbiguousConstraint.
In effect, this RCG should bias the remodel trajectory such that
one remodel residue backbone overlays with one inverse rotamer backbone
 
 
Method resolution order:
InverseRotamersRCG
rosetta.protocols.forge.remodel.RemodelConstraintGenerator
rosetta.protocols.moves.Mover
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(handle) -> NoneType
 
2. __init__(handle, rosetta.protocols.forge.constraints.InverseRotamersRCG) -> NoneType
 
3. __init__(self : handle, lstart : int, lstop : int, inverse_rotamers : rosetta.std.list_std_shared_ptr_const_core_conformation_Residue_std_allocator_std_shared_ptr_const_core_conformation_Residue_t) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.forge.constraints.InverseRotamersRCG,  : rosetta.protocols.forge.constraints.InverseRotamersRCG) -> rosetta.protocols.forge.constraints.InverseRotamersRCG
clear_inverse_rotamers(...) from builtins.PyCapsule
clear_inverse_rotamers(rosetta.protocols.forge.constraints.InverseRotamersRCG) -> NoneType
clone(...) from builtins.PyCapsule
clone(rosetta.protocols.forge.constraints.InverseRotamersRCG) -> rosetta.protocols.moves.Mover
fresh_instance(...) from builtins.PyCapsule
fresh_instance(rosetta.protocols.forge.constraints.InverseRotamersRCG) -> rosetta.protocols.moves.Mover
generate_remodel_constraints(...) from builtins.PyCapsule
generate_remodel_constraints(self : rosetta.protocols.forge.constraints.InverseRotamersRCG, pose : rosetta.core.pose.Pose) -> NoneType
get_name(...) from builtins.PyCapsule
get_name(rosetta.protocols.forge.constraints.InverseRotamersRCG) -> str
init(...) from builtins.PyCapsule
init(self : rosetta.protocols.forge.constraints.InverseRotamersRCG, lstart : int, lstop : int, inverse_rotamers : rosetta.std.list_std_shared_ptr_const_core_conformation_Residue_std_allocator_std_shared_ptr_const_core_conformation_Residue_t) -> NoneType
 
initialize with given lstart, lstop, and inverse rotamer residue list
set_constraint_func(...) from builtins.PyCapsule
set_constraint_func(self : rosetta.protocols.forge.constraints.InverseRotamersRCG, constraint_func : rosetta.core.scoring.func.Func) -> NoneType

Methods inherited from rosetta.protocols.forge.remodel.RemodelConstraintGenerator:
add_remodel_constraints_to_pose(...) from builtins.PyCapsule
add_remodel_constraints_to_pose(self : rosetta.protocols.forge.remodel.RemodelConstraintGenerator, pose : rosetta.core.pose.Pose) -> NoneType
apply(...) from builtins.PyCapsule
apply(self : rosetta.protocols.forge.remodel.RemodelConstraintGenerator, pose : rosetta.core.pose.Pose) -> NoneType
 
generates constraints and adds them to the pose
constraints(...) from builtins.PyCapsule
constraints(rosetta.protocols.forge.remodel.RemodelConstraintGenerator) -> rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t
id(...) from builtins.PyCapsule
id(rosetta.protocols.forge.remodel.RemodelConstraintGenerator) -> str
lookup_stored_constraints(...) from builtins.PyCapsule
lookup_stored_constraints(id : str) -> rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t
remove_remodel_constraints_from_pose(...) from builtins.PyCapsule
remove_remodel_constraints_from_pose(self : rosetta.protocols.forge.remodel.RemodelConstraintGenerator, pose : rosetta.core.pose.Pose) -> NoneType
seqmap(...) from builtins.PyCapsule
seqmap(rosetta.protocols.forge.remodel.RemodelConstraintGenerator) -> rosetta.core.id.SequenceMapping
set_id(...) from builtins.PyCapsule
set_id(self : rosetta.protocols.forge.remodel.RemodelConstraintGenerator, id : str) -> NoneType
set_seqmap(...) from builtins.PyCapsule
set_seqmap(self : rosetta.protocols.forge.remodel.RemodelConstraintGenerator, seqmap : rosetta.core.id.SequenceMapping) -> NoneType
set_vlb(...) from builtins.PyCapsule
set_vlb(self : rosetta.protocols.forge.remodel.RemodelConstraintGenerator, vlb : rosetta.std.weak_ptr_protocols_forge_components_VarLengthBuild_t) -> NoneType
vlb(...) from builtins.PyCapsule
vlb(rosetta.protocols.forge.remodel.RemodelConstraintGenerator) -> rosetta.std.weak_ptr_protocols_forge_components_VarLengthBuild_t

Methods inherited from rosetta.protocols.moves.Mover:
clear_info(...) from builtins.PyCapsule
clear_info(rosetta.protocols.moves.Mover) -> NoneType
 
Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.
 
 
 clear_info is called by jd2 before calling apply
create(...) from builtins.PyCapsule
create(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
get_additional_output(...) from builtins.PyCapsule
get_additional_output(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
 
fpd
 
 
 Mechanism by which a mover may return multiple output poses from a single input pose.
get_current_job(...) from builtins.PyCapsule
get_current_job(rosetta.protocols.moves.Mover) -> protocols::jobdist::BasicJob
get_current_tag(...) from builtins.PyCapsule
get_current_tag(rosetta.protocols.moves.Mover) -> str
 
A tag is a unique identifier used to identify structures produced
 by this Moverget_current_tag() returns the tag, and set_current_tag( std::string tag )
 sets the tag.  This functionality is not intended for use with the 2008 job distributor.
get_input_pose(...) from builtins.PyCapsule
get_input_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
get_last_move_status(...) from builtins.PyCapsule
get_last_move_status(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.MoverStatus
 
returns status after an apply().  The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say "that run was no good, skip it" then use the protected last_move_status(MoverStatus) to change the value that this function will return.
get_native_pose(...) from builtins.PyCapsule
get_native_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
get_self_ptr(...) from builtins.PyCapsule
get_self_ptr(*args, **kwargs)
Overloaded function.
 
1. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
 
2. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
get_self_weak_ptr(...) from builtins.PyCapsule
get_self_weak_ptr(*args, **kwargs)
Overloaded function.
 
1. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_const_protocols_moves_Mover_t
 
2. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_protocols_moves_Mover_t
get_type(...) from builtins.PyCapsule
get_type(rosetta.protocols.moves.Mover) -> str
info(...) from builtins.PyCapsule
info(*args, **kwargs)
Overloaded function.
 
1. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t
 
non-const accessor
 
2. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t
 
const accessor
last_proposal_density_ratio(...) from builtins.PyCapsule
last_proposal_density_ratio(rosetta.protocols.moves.Mover) -> float
name(...) from builtins.PyCapsule
name() -> str
register_options(...) from builtins.PyCapsule
register_options(*args, **kwargs)
Overloaded function.
 
1. register_options() -> NoneType
 
Overload this static method if you access options within the mover.
 
 
 These options will end up in -help of your application if users of this mover call register_options.
 Do this recursively!
 If you use movers within your mover, call their register_options in your register_options() method.
 
2. register_options() -> NoneType
 
3. register_options() -> NoneType
 
4. register_options() -> NoneType
 
5. register_options() -> NoneType
 
6. register_options() -> NoneType
 
7. register_options() -> NoneType
 
8. register_options() -> NoneType
 
9. register_options() -> NoneType
 
Associates relevant options with the AntibodyModeler class
 
10. register_options() -> NoneType
 
Associates relevant options with the AntibodyModeler class
 
11. register_options() -> NoneType
 
Associates relevant options with the SnugDock class
 
12. register_options() -> NoneType
 
Associates relevant options with the SnugDockProtocol class
 
13. register_options() -> NoneType
 
Register the options used by this mover with the global options
 system.
 
14. register_options() -> NoneType
 
15. register_options() -> NoneType
 
Associate relevant options with the TemperedDocking class.
 
16. register_options() -> NoneType
 
17. register_options() -> NoneType
 
18. register_options() -> NoneType
 
Associates relevant options with the TemperedDocking class.
 
19. register_options() -> NoneType
 
20. register_options() -> NoneType
 
Associates relevant options with the ConstraintSetMover class
 
21. register_options() -> NoneType
 
22. register_options() -> NoneType
 
Associates relevant options with the DockingInitialPerturbation class
 
23. register_options() -> NoneType
 
Associates relevant options with the DockingProtocol class
 
24. register_options() -> NoneType
 
Associates relevant options with the TemperedDocking class
 
25. register_options() -> NoneType
 
26. register_options() -> NoneType
 
27. register_options() -> NoneType
 
28. register_options() -> NoneType
 
register options
 
29. register_options() -> NoneType
 
30. register_options() -> NoneType
 
Registers applicable options
 
31. register_options() -> NoneType
 
Register options with the option system.
 
32. register_options() -> NoneType
 
33. register_options() -> NoneType
 
34. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
35. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycleContainer class
 
36. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
37. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
38. register_options() -> NoneType
 
39. register_options() -> NoneType
 
Register options with the option system.
 
40. register_options() -> NoneType
reinitialize_for_each_job(...) from builtins.PyCapsule
reinitialize_for_each_job(rosetta.protocols.moves.Mover) -> bool
 
Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on
 each use.
reinitialize_for_new_input(...) from builtins.PyCapsule
reinitialize_for_new_input(rosetta.protocols.moves.Mover) -> bool
 
Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input
 pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for
 that one input pose).
reset_status(...) from builtins.PyCapsule
reset_status(rosetta.protocols.moves.Mover) -> NoneType
 
resets status to SUCCESS, meant to be used before an apply().  The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.
set_current_job(...) from builtins.PyCapsule
set_current_job(self : rosetta.protocols.moves.Mover, job : protocols::jobdist::BasicJob) -> NoneType
 
////////////////////////////end Job Distributor interface////////////////////////////////////////
set_current_tag(...) from builtins.PyCapsule
set_current_tag(self : rosetta.protocols.moves.Mover, new_tag : str) -> NoneType
set_input_pose(...) from builtins.PyCapsule
set_input_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
setter for poses contained for rms
set_native_pose(...) from builtins.PyCapsule
set_native_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
setter for native poses contained for rms ---- we should get rid of this method? it is widely used, but a bit unsafe
set_type(...) from builtins.PyCapsule
set_type(self : rosetta.protocols.moves.Mover, setting : str) -> NoneType
test_move(...) from builtins.PyCapsule
test_move(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
: Unit test support function.  Apply one move to a given pose.
      Allows extra test specific functions to be called before applying
type(...) from builtins.PyCapsule
type(*args, **kwargs)
Overloaded function.
 
1. type(rosetta.protocols.moves.Mover) -> str
 
2. type(self : rosetta.protocols.moves.Mover, type_in : str) -> NoneType

 
class InvrotTreeCstGeneratorCreator(rosetta.protocols.moves.MoverCreator)
    
Method resolution order:
InvrotTreeCstGeneratorCreator
rosetta.protocols.moves.MoverCreator
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(handle) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.forge.constraints.InvrotTreeCstGeneratorCreator,  : rosetta.protocols.forge.constraints.InvrotTreeCstGeneratorCreator) -> rosetta.protocols.forge.constraints.InvrotTreeCstGeneratorCreator
create_mover(...) from builtins.PyCapsule
create_mover(rosetta.protocols.forge.constraints.InvrotTreeCstGeneratorCreator) -> rosetta.protocols.moves.Mover
keyname(...) from builtins.PyCapsule
keyname(rosetta.protocols.forge.constraints.InvrotTreeCstGeneratorCreator) -> str
mover_name(...) from builtins.PyCapsule
mover_name() -> str

 
class InvrotTreeRCG(rosetta.protocols.forge.remodel.RemodelConstraintGenerator)
    RemodelConstraintGenerator wrapper that makes
the constraints generated by an InvrotTree available in
VLB or XML
 
 
Method resolution order:
InvrotTreeRCG
rosetta.protocols.forge.remodel.RemodelConstraintGenerator
rosetta.protocols.moves.Mover
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(handle) -> NoneType
 
2. __init__(handle, rosetta.protocols.forge.constraints.InvrotTreeRCG) -> NoneType
 
3. __init__(self : handle, invrot_tree : protocols::toolbox::match_enzdes_util::InvrotTree, geomcst_seqpos : protocols::toolbox::match_enzdes_util::AllowedSeqposForGeomCst) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
apply(...) from builtins.PyCapsule
apply(self : rosetta.protocols.forge.constraints.InvrotTreeRCG, pose : rosetta.core.pose.Pose) -> NoneType
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.forge.constraints.InvrotTreeRCG,  : rosetta.protocols.forge.constraints.InvrotTreeRCG) -> rosetta.protocols.forge.constraints.InvrotTreeRCG
clone(...) from builtins.PyCapsule
clone(rosetta.protocols.forge.constraints.InvrotTreeRCG) -> rosetta.protocols.moves.Mover
fresh_instance(...) from builtins.PyCapsule
fresh_instance(rosetta.protocols.forge.constraints.InvrotTreeRCG) -> rosetta.protocols.moves.Mover
generate_remodel_constraints(...) from builtins.PyCapsule
generate_remodel_constraints(self : rosetta.protocols.forge.constraints.InvrotTreeRCG, pose : rosetta.core.pose.Pose) -> NoneType
get_name(...) from builtins.PyCapsule
get_name(rosetta.protocols.forge.constraints.InvrotTreeRCG) -> str
init(...) from builtins.PyCapsule
init(self : rosetta.protocols.forge.constraints.InvrotTreeRCG, pose : rosetta.core.pose.Pose) -> NoneType
 
sets up the allowed sequence positions for enzdes geometric constraints
set_add_ligand_to_pose(...) from builtins.PyCapsule
set_add_ligand_to_pose(self : rosetta.protocols.forge.constraints.InvrotTreeRCG, add_lig : bool) -> NoneType
 
tells the mover whether it should add the ligand to the pose
set_cstfile(...) from builtins.PyCapsule
set_cstfile(self : rosetta.protocols.forge.constraints.InvrotTreeRCG, cstfilename : str) -> NoneType
 
sets up the invrot_tree_ and enzcst_io_ from an enzdes constraint filename.

Methods inherited from rosetta.protocols.forge.remodel.RemodelConstraintGenerator:
add_remodel_constraints_to_pose(...) from builtins.PyCapsule
add_remodel_constraints_to_pose(self : rosetta.protocols.forge.remodel.RemodelConstraintGenerator, pose : rosetta.core.pose.Pose) -> NoneType
constraints(...) from builtins.PyCapsule
constraints(rosetta.protocols.forge.remodel.RemodelConstraintGenerator) -> rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t
id(...) from builtins.PyCapsule
id(rosetta.protocols.forge.remodel.RemodelConstraintGenerator) -> str
lookup_stored_constraints(...) from builtins.PyCapsule
lookup_stored_constraints(id : str) -> rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t
remove_remodel_constraints_from_pose(...) from builtins.PyCapsule
remove_remodel_constraints_from_pose(self : rosetta.protocols.forge.remodel.RemodelConstraintGenerator, pose : rosetta.core.pose.Pose) -> NoneType
seqmap(...) from builtins.PyCapsule
seqmap(rosetta.protocols.forge.remodel.RemodelConstraintGenerator) -> rosetta.core.id.SequenceMapping
set_id(...) from builtins.PyCapsule
set_id(self : rosetta.protocols.forge.remodel.RemodelConstraintGenerator, id : str) -> NoneType
set_seqmap(...) from builtins.PyCapsule
set_seqmap(self : rosetta.protocols.forge.remodel.RemodelConstraintGenerator, seqmap : rosetta.core.id.SequenceMapping) -> NoneType
set_vlb(...) from builtins.PyCapsule
set_vlb(self : rosetta.protocols.forge.remodel.RemodelConstraintGenerator, vlb : rosetta.std.weak_ptr_protocols_forge_components_VarLengthBuild_t) -> NoneType
vlb(...) from builtins.PyCapsule
vlb(rosetta.protocols.forge.remodel.RemodelConstraintGenerator) -> rosetta.std.weak_ptr_protocols_forge_components_VarLengthBuild_t

Methods inherited from rosetta.protocols.moves.Mover:
clear_info(...) from builtins.PyCapsule
clear_info(rosetta.protocols.moves.Mover) -> NoneType
 
Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.
 
 
 clear_info is called by jd2 before calling apply
create(...) from builtins.PyCapsule
create(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
get_additional_output(...) from builtins.PyCapsule
get_additional_output(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
 
fpd
 
 
 Mechanism by which a mover may return multiple output poses from a single input pose.
get_current_job(...) from builtins.PyCapsule
get_current_job(rosetta.protocols.moves.Mover) -> protocols::jobdist::BasicJob
get_current_tag(...) from builtins.PyCapsule
get_current_tag(rosetta.protocols.moves.Mover) -> str
 
A tag is a unique identifier used to identify structures produced
 by this Moverget_current_tag() returns the tag, and set_current_tag( std::string tag )
 sets the tag.  This functionality is not intended for use with the 2008 job distributor.
get_input_pose(...) from builtins.PyCapsule
get_input_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
get_last_move_status(...) from builtins.PyCapsule
get_last_move_status(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.MoverStatus
 
returns status after an apply().  The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say "that run was no good, skip it" then use the protected last_move_status(MoverStatus) to change the value that this function will return.
get_native_pose(...) from builtins.PyCapsule
get_native_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
get_self_ptr(...) from builtins.PyCapsule
get_self_ptr(*args, **kwargs)
Overloaded function.
 
1. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
 
2. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
get_self_weak_ptr(...) from builtins.PyCapsule
get_self_weak_ptr(*args, **kwargs)
Overloaded function.
 
1. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_const_protocols_moves_Mover_t
 
2. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_protocols_moves_Mover_t
get_type(...) from builtins.PyCapsule
get_type(rosetta.protocols.moves.Mover) -> str
info(...) from builtins.PyCapsule
info(*args, **kwargs)
Overloaded function.
 
1. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t
 
non-const accessor
 
2. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t
 
const accessor
last_proposal_density_ratio(...) from builtins.PyCapsule
last_proposal_density_ratio(rosetta.protocols.moves.Mover) -> float
name(...) from builtins.PyCapsule
name() -> str
register_options(...) from builtins.PyCapsule
register_options(*args, **kwargs)
Overloaded function.
 
1. register_options() -> NoneType
 
Overload this static method if you access options within the mover.
 
 
 These options will end up in -help of your application if users of this mover call register_options.
 Do this recursively!
 If you use movers within your mover, call their register_options in your register_options() method.
 
2. register_options() -> NoneType
 
3. register_options() -> NoneType
 
4. register_options() -> NoneType
 
5. register_options() -> NoneType
 
6. register_options() -> NoneType
 
7. register_options() -> NoneType
 
8. register_options() -> NoneType
 
9. register_options() -> NoneType
 
Associates relevant options with the AntibodyModeler class
 
10. register_options() -> NoneType
 
Associates relevant options with the AntibodyModeler class
 
11. register_options() -> NoneType
 
Associates relevant options with the SnugDock class
 
12. register_options() -> NoneType
 
Associates relevant options with the SnugDockProtocol class
 
13. register_options() -> NoneType
 
Register the options used by this mover with the global options
 system.
 
14. register_options() -> NoneType
 
15. register_options() -> NoneType
 
Associate relevant options with the TemperedDocking class.
 
16. register_options() -> NoneType
 
17. register_options() -> NoneType
 
18. register_options() -> NoneType
 
Associates relevant options with the TemperedDocking class.
 
19. register_options() -> NoneType
 
20. register_options() -> NoneType
 
Associates relevant options with the ConstraintSetMover class
 
21. register_options() -> NoneType
 
22. register_options() -> NoneType
 
Associates relevant options with the DockingInitialPerturbation class
 
23. register_options() -> NoneType
 
Associates relevant options with the DockingProtocol class
 
24. register_options() -> NoneType
 
Associates relevant options with the TemperedDocking class
 
25. register_options() -> NoneType
 
26. register_options() -> NoneType
 
27. register_options() -> NoneType
 
28. register_options() -> NoneType
 
register options
 
29. register_options() -> NoneType
 
30. register_options() -> NoneType
 
Registers applicable options
 
31. register_options() -> NoneType
 
Register options with the option system.
 
32. register_options() -> NoneType
 
33. register_options() -> NoneType
 
34. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
35. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycleContainer class
 
36. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
37. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
38. register_options() -> NoneType
 
39. register_options() -> NoneType
 
Register options with the option system.
 
40. register_options() -> NoneType
reinitialize_for_each_job(...) from builtins.PyCapsule
reinitialize_for_each_job(rosetta.protocols.moves.Mover) -> bool
 
Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on
 each use.
reinitialize_for_new_input(...) from builtins.PyCapsule
reinitialize_for_new_input(rosetta.protocols.moves.Mover) -> bool
 
Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input
 pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for
 that one input pose).
reset_status(...) from builtins.PyCapsule
reset_status(rosetta.protocols.moves.Mover) -> NoneType
 
resets status to SUCCESS, meant to be used before an apply().  The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.
set_current_job(...) from builtins.PyCapsule
set_current_job(self : rosetta.protocols.moves.Mover, job : protocols::jobdist::BasicJob) -> NoneType
 
////////////////////////////end Job Distributor interface////////////////////////////////////////
set_current_tag(...) from builtins.PyCapsule
set_current_tag(self : rosetta.protocols.moves.Mover, new_tag : str) -> NoneType
set_input_pose(...) from builtins.PyCapsule
set_input_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
setter for poses contained for rms
set_native_pose(...) from builtins.PyCapsule
set_native_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
setter for native poses contained for rms ---- we should get rid of this method? it is widely used, but a bit unsafe
set_type(...) from builtins.PyCapsule
set_type(self : rosetta.protocols.moves.Mover, setting : str) -> NoneType
test_move(...) from builtins.PyCapsule
test_move(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
: Unit test support function.  Apply one move to a given pose.
      Allows extra test specific functions to be called before applying
type(...) from builtins.PyCapsule
type(*args, **kwargs)
Overloaded function.
 
1. type(rosetta.protocols.moves.Mover) -> str
 
2. type(self : rosetta.protocols.moves.Mover, type_in : str) -> NoneType

 
class NtoCConstraintGenerator(rosetta.protocols.forge.remodel.RemodelConstraintGenerator)
    
Method resolution order:
NtoCConstraintGenerator
rosetta.protocols.forge.remodel.RemodelConstraintGenerator
rosetta.protocols.moves.Mover
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(handle) -> NoneType
 
2. __init__(self : handle, dist : float, coef : float) -> NoneType
 
3. __init__(handle, rosetta.protocols.forge.constraints.NtoCConstraintGenerator) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.forge.constraints.NtoCConstraintGenerator,  : rosetta.protocols.forge.constraints.NtoCConstraintGenerator) -> rosetta.protocols.forge.constraints.NtoCConstraintGenerator
clone(...) from builtins.PyCapsule
clone(rosetta.protocols.forge.constraints.NtoCConstraintGenerator) -> rosetta.protocols.moves.Mover
fresh_instance(...) from builtins.PyCapsule
fresh_instance(rosetta.protocols.forge.constraints.NtoCConstraintGenerator) -> rosetta.protocols.moves.Mover
generate_remodel_constraints(...) from builtins.PyCapsule
generate_remodel_constraints(self : rosetta.protocols.forge.constraints.NtoCConstraintGenerator, pose : rosetta.core.pose.Pose) -> NoneType
get_name(...) from builtins.PyCapsule
get_name(rosetta.protocols.forge.constraints.NtoCConstraintGenerator) -> str

Methods inherited from rosetta.protocols.forge.remodel.RemodelConstraintGenerator:
add_remodel_constraints_to_pose(...) from builtins.PyCapsule
add_remodel_constraints_to_pose(self : rosetta.protocols.forge.remodel.RemodelConstraintGenerator, pose : rosetta.core.pose.Pose) -> NoneType
apply(...) from builtins.PyCapsule
apply(self : rosetta.protocols.forge.remodel.RemodelConstraintGenerator, pose : rosetta.core.pose.Pose) -> NoneType
 
generates constraints and adds them to the pose
constraints(...) from builtins.PyCapsule
constraints(rosetta.protocols.forge.remodel.RemodelConstraintGenerator) -> rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t
id(...) from builtins.PyCapsule
id(rosetta.protocols.forge.remodel.RemodelConstraintGenerator) -> str
init(...) from builtins.PyCapsule
init(self : rosetta.protocols.forge.remodel.RemodelConstraintGenerator,  : rosetta.core.pose.Pose) -> NoneType
 
Pose-specific setup routines go here
lookup_stored_constraints(...) from builtins.PyCapsule
lookup_stored_constraints(id : str) -> rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t
remove_remodel_constraints_from_pose(...) from builtins.PyCapsule
remove_remodel_constraints_from_pose(self : rosetta.protocols.forge.remodel.RemodelConstraintGenerator, pose : rosetta.core.pose.Pose) -> NoneType
seqmap(...) from builtins.PyCapsule
seqmap(rosetta.protocols.forge.remodel.RemodelConstraintGenerator) -> rosetta.core.id.SequenceMapping
set_id(...) from builtins.PyCapsule
set_id(self : rosetta.protocols.forge.remodel.RemodelConstraintGenerator, id : str) -> NoneType
set_seqmap(...) from builtins.PyCapsule
set_seqmap(self : rosetta.protocols.forge.remodel.RemodelConstraintGenerator, seqmap : rosetta.core.id.SequenceMapping) -> NoneType
set_vlb(...) from builtins.PyCapsule
set_vlb(self : rosetta.protocols.forge.remodel.RemodelConstraintGenerator, vlb : rosetta.std.weak_ptr_protocols_forge_components_VarLengthBuild_t) -> NoneType
vlb(...) from builtins.PyCapsule
vlb(rosetta.protocols.forge.remodel.RemodelConstraintGenerator) -> rosetta.std.weak_ptr_protocols_forge_components_VarLengthBuild_t

Methods inherited from rosetta.protocols.moves.Mover:
clear_info(...) from builtins.PyCapsule
clear_info(rosetta.protocols.moves.Mover) -> NoneType
 
Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.
 
 
 clear_info is called by jd2 before calling apply
create(...) from builtins.PyCapsule
create(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
get_additional_output(...) from builtins.PyCapsule
get_additional_output(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
 
fpd
 
 
 Mechanism by which a mover may return multiple output poses from a single input pose.
get_current_job(...) from builtins.PyCapsule
get_current_job(rosetta.protocols.moves.Mover) -> protocols::jobdist::BasicJob
get_current_tag(...) from builtins.PyCapsule
get_current_tag(rosetta.protocols.moves.Mover) -> str
 
A tag is a unique identifier used to identify structures produced
 by this Moverget_current_tag() returns the tag, and set_current_tag( std::string tag )
 sets the tag.  This functionality is not intended for use with the 2008 job distributor.
get_input_pose(...) from builtins.PyCapsule
get_input_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
get_last_move_status(...) from builtins.PyCapsule
get_last_move_status(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.MoverStatus
 
returns status after an apply().  The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say "that run was no good, skip it" then use the protected last_move_status(MoverStatus) to change the value that this function will return.
get_native_pose(...) from builtins.PyCapsule
get_native_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
get_self_ptr(...) from builtins.PyCapsule
get_self_ptr(*args, **kwargs)
Overloaded function.
 
1. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
 
2. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
get_self_weak_ptr(...) from builtins.PyCapsule
get_self_weak_ptr(*args, **kwargs)
Overloaded function.
 
1. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_const_protocols_moves_Mover_t
 
2. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_protocols_moves_Mover_t
get_type(...) from builtins.PyCapsule
get_type(rosetta.protocols.moves.Mover) -> str
info(...) from builtins.PyCapsule
info(*args, **kwargs)
Overloaded function.
 
1. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t
 
non-const accessor
 
2. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t
 
const accessor
last_proposal_density_ratio(...) from builtins.PyCapsule
last_proposal_density_ratio(rosetta.protocols.moves.Mover) -> float
name(...) from builtins.PyCapsule
name() -> str
register_options(...) from builtins.PyCapsule
register_options(*args, **kwargs)
Overloaded function.
 
1. register_options() -> NoneType
 
Overload this static method if you access options within the mover.
 
 
 These options will end up in -help of your application if users of this mover call register_options.
 Do this recursively!
 If you use movers within your mover, call their register_options in your register_options() method.
 
2. register_options() -> NoneType
 
3. register_options() -> NoneType
 
4. register_options() -> NoneType
 
5. register_options() -> NoneType
 
6. register_options() -> NoneType
 
7. register_options() -> NoneType
 
8. register_options() -> NoneType
 
9. register_options() -> NoneType
 
Associates relevant options with the AntibodyModeler class
 
10. register_options() -> NoneType
 
Associates relevant options with the AntibodyModeler class
 
11. register_options() -> NoneType
 
Associates relevant options with the SnugDock class
 
12. register_options() -> NoneType
 
Associates relevant options with the SnugDockProtocol class
 
13. register_options() -> NoneType
 
Register the options used by this mover with the global options
 system.
 
14. register_options() -> NoneType
 
15. register_options() -> NoneType
 
Associate relevant options with the TemperedDocking class.
 
16. register_options() -> NoneType
 
17. register_options() -> NoneType
 
18. register_options() -> NoneType
 
Associates relevant options with the TemperedDocking class.
 
19. register_options() -> NoneType
 
20. register_options() -> NoneType
 
Associates relevant options with the ConstraintSetMover class
 
21. register_options() -> NoneType
 
22. register_options() -> NoneType
 
Associates relevant options with the DockingInitialPerturbation class
 
23. register_options() -> NoneType
 
Associates relevant options with the DockingProtocol class
 
24. register_options() -> NoneType
 
Associates relevant options with the TemperedDocking class
 
25. register_options() -> NoneType
 
26. register_options() -> NoneType
 
27. register_options() -> NoneType
 
28. register_options() -> NoneType
 
register options
 
29. register_options() -> NoneType
 
30. register_options() -> NoneType
 
Registers applicable options
 
31. register_options() -> NoneType
 
Register options with the option system.
 
32. register_options() -> NoneType
 
33. register_options() -> NoneType
 
34. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
35. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycleContainer class
 
36. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
37. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
38. register_options() -> NoneType
 
39. register_options() -> NoneType
 
Register options with the option system.
 
40. register_options() -> NoneType
reinitialize_for_each_job(...) from builtins.PyCapsule
reinitialize_for_each_job(rosetta.protocols.moves.Mover) -> bool
 
Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on
 each use.
reinitialize_for_new_input(...) from builtins.PyCapsule
reinitialize_for_new_input(rosetta.protocols.moves.Mover) -> bool
 
Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input
 pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for
 that one input pose).
reset_status(...) from builtins.PyCapsule
reset_status(rosetta.protocols.moves.Mover) -> NoneType
 
resets status to SUCCESS, meant to be used before an apply().  The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.
set_current_job(...) from builtins.PyCapsule
set_current_job(self : rosetta.protocols.moves.Mover, job : protocols::jobdist::BasicJob) -> NoneType
 
////////////////////////////end Job Distributor interface////////////////////////////////////////
set_current_tag(...) from builtins.PyCapsule
set_current_tag(self : rosetta.protocols.moves.Mover, new_tag : str) -> NoneType
set_input_pose(...) from builtins.PyCapsule
set_input_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
setter for poses contained for rms
set_native_pose(...) from builtins.PyCapsule
set_native_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
setter for native poses contained for rms ---- we should get rid of this method? it is widely used, but a bit unsafe
set_type(...) from builtins.PyCapsule
set_type(self : rosetta.protocols.moves.Mover, setting : str) -> NoneType
test_move(...) from builtins.PyCapsule
test_move(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
: Unit test support function.  Apply one move to a given pose.
      Allows extra test specific functions to be called before applying
type(...) from builtins.PyCapsule
type(*args, **kwargs)
Overloaded function.
 
1. type(rosetta.protocols.moves.Mover) -> str
 
2. type(self : rosetta.protocols.moves.Mover, type_in : str) -> NoneType

 
class NtoCConstraintGeneratorCreator(rosetta.protocols.moves.MoverCreator)
    
Method resolution order:
NtoCConstraintGeneratorCreator
rosetta.protocols.moves.MoverCreator
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(handle) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.forge.constraints.NtoCConstraintGeneratorCreator,  : rosetta.protocols.forge.constraints.NtoCConstraintGeneratorCreator) -> rosetta.protocols.forge.constraints.NtoCConstraintGeneratorCreator
create_mover(...) from builtins.PyCapsule
create_mover(rosetta.protocols.forge.constraints.NtoCConstraintGeneratorCreator) -> rosetta.protocols.moves.Mover
keyname(...) from builtins.PyCapsule
keyname(rosetta.protocols.forge.constraints.NtoCConstraintGeneratorCreator) -> str
mover_name(...) from builtins.PyCapsule
mover_name() -> str

 
class RemoveRemodelCsts(rosetta.protocols.moves.Mover)
    
Method resolution order:
RemoveRemodelCsts
rosetta.protocols.moves.Mover
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(handle) -> NoneType
 
2. __init__(handle, rosetta.protocols.forge.constraints.RemoveRemodelCsts) -> NoneType
 
3. __init__(self : handle, generator : rosetta.protocols.forge.remodel.RemodelConstraintGenerator) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
apply(...) from builtins.PyCapsule
apply(self : rosetta.protocols.forge.constraints.RemoveRemodelCsts, pose : rosetta.core.pose.Pose) -> NoneType
 
this function looks up the constraints created by the object with the given generator and removes them
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.forge.constraints.RemoveRemodelCsts,  : rosetta.protocols.forge.constraints.RemoveRemodelCsts) -> rosetta.protocols.forge.constraints.RemoveRemodelCsts
clone(...) from builtins.PyCapsule
clone(rosetta.protocols.forge.constraints.RemoveRemodelCsts) -> rosetta.protocols.moves.Mover
fresh_instance(...) from builtins.PyCapsule
fresh_instance(rosetta.protocols.forge.constraints.RemoveRemodelCsts) -> rosetta.protocols.moves.Mover
get_name(...) from builtins.PyCapsule
get_name(rosetta.protocols.forge.constraints.RemoveRemodelCsts) -> str
set_generator(...) from builtins.PyCapsule
set_generator(self : rosetta.protocols.forge.constraints.RemoveRemodelCsts, generator : rosetta.protocols.forge.remodel.RemodelConstraintGenerator) -> NoneType

Methods inherited from rosetta.protocols.moves.Mover:
clear_info(...) from builtins.PyCapsule
clear_info(rosetta.protocols.moves.Mover) -> NoneType
 
Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.
 
 
 clear_info is called by jd2 before calling apply
create(...) from builtins.PyCapsule
create(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
get_additional_output(...) from builtins.PyCapsule
get_additional_output(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
 
fpd
 
 
 Mechanism by which a mover may return multiple output poses from a single input pose.
get_current_job(...) from builtins.PyCapsule
get_current_job(rosetta.protocols.moves.Mover) -> protocols::jobdist::BasicJob
get_current_tag(...) from builtins.PyCapsule
get_current_tag(rosetta.protocols.moves.Mover) -> str
 
A tag is a unique identifier used to identify structures produced
 by this Moverget_current_tag() returns the tag, and set_current_tag( std::string tag )
 sets the tag.  This functionality is not intended for use with the 2008 job distributor.
get_input_pose(...) from builtins.PyCapsule
get_input_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
get_last_move_status(...) from builtins.PyCapsule
get_last_move_status(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.MoverStatus
 
returns status after an apply().  The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say "that run was no good, skip it" then use the protected last_move_status(MoverStatus) to change the value that this function will return.
get_native_pose(...) from builtins.PyCapsule
get_native_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
get_self_ptr(...) from builtins.PyCapsule
get_self_ptr(*args, **kwargs)
Overloaded function.
 
1. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
 
2. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
get_self_weak_ptr(...) from builtins.PyCapsule
get_self_weak_ptr(*args, **kwargs)
Overloaded function.
 
1. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_const_protocols_moves_Mover_t
 
2. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_protocols_moves_Mover_t
get_type(...) from builtins.PyCapsule
get_type(rosetta.protocols.moves.Mover) -> str
info(...) from builtins.PyCapsule
info(*args, **kwargs)
Overloaded function.
 
1. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t
 
non-const accessor
 
2. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t
 
const accessor
last_proposal_density_ratio(...) from builtins.PyCapsule
last_proposal_density_ratio(rosetta.protocols.moves.Mover) -> float
name(...) from builtins.PyCapsule
name() -> str
register_options(...) from builtins.PyCapsule
register_options(*args, **kwargs)
Overloaded function.
 
1. register_options() -> NoneType
 
Overload this static method if you access options within the mover.
 
 
 These options will end up in -help of your application if users of this mover call register_options.
 Do this recursively!
 If you use movers within your mover, call their register_options in your register_options() method.
 
2. register_options() -> NoneType
 
3. register_options() -> NoneType
 
4. register_options() -> NoneType
 
5. register_options() -> NoneType
 
6. register_options() -> NoneType
 
7. register_options() -> NoneType
 
8. register_options() -> NoneType
 
9. register_options() -> NoneType
 
Associates relevant options with the AntibodyModeler class
 
10. register_options() -> NoneType
 
Associates relevant options with the AntibodyModeler class
 
11. register_options() -> NoneType
 
Associates relevant options with the SnugDock class
 
12. register_options() -> NoneType
 
Associates relevant options with the SnugDockProtocol class
 
13. register_options() -> NoneType
 
Register the options used by this mover with the global options
 system.
 
14. register_options() -> NoneType
 
15. register_options() -> NoneType
 
Associate relevant options with the TemperedDocking class.
 
16. register_options() -> NoneType
 
17. register_options() -> NoneType
 
18. register_options() -> NoneType
 
Associates relevant options with the TemperedDocking class.
 
19. register_options() -> NoneType
 
20. register_options() -> NoneType
 
Associates relevant options with the ConstraintSetMover class
 
21. register_options() -> NoneType
 
22. register_options() -> NoneType
 
Associates relevant options with the DockingInitialPerturbation class
 
23. register_options() -> NoneType
 
Associates relevant options with the DockingProtocol class
 
24. register_options() -> NoneType
 
Associates relevant options with the TemperedDocking class
 
25. register_options() -> NoneType
 
26. register_options() -> NoneType
 
27. register_options() -> NoneType
 
28. register_options() -> NoneType
 
register options
 
29. register_options() -> NoneType
 
30. register_options() -> NoneType
 
Registers applicable options
 
31. register_options() -> NoneType
 
Register options with the option system.
 
32. register_options() -> NoneType
 
33. register_options() -> NoneType
 
34. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
35. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycleContainer class
 
36. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
37. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
38. register_options() -> NoneType
 
39. register_options() -> NoneType
 
Register options with the option system.
 
40. register_options() -> NoneType
reinitialize_for_each_job(...) from builtins.PyCapsule
reinitialize_for_each_job(rosetta.protocols.moves.Mover) -> bool
 
Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on
 each use.
reinitialize_for_new_input(...) from builtins.PyCapsule
reinitialize_for_new_input(rosetta.protocols.moves.Mover) -> bool
 
Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input
 pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for
 that one input pose).
reset_status(...) from builtins.PyCapsule
reset_status(rosetta.protocols.moves.Mover) -> NoneType
 
resets status to SUCCESS, meant to be used before an apply().  The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.
set_current_job(...) from builtins.PyCapsule
set_current_job(self : rosetta.protocols.moves.Mover, job : protocols::jobdist::BasicJob) -> NoneType
 
////////////////////////////end Job Distributor interface////////////////////////////////////////
set_current_tag(...) from builtins.PyCapsule
set_current_tag(self : rosetta.protocols.moves.Mover, new_tag : str) -> NoneType
set_input_pose(...) from builtins.PyCapsule
set_input_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
setter for poses contained for rms
set_native_pose(...) from builtins.PyCapsule
set_native_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
setter for native poses contained for rms ---- we should get rid of this method? it is widely used, but a bit unsafe
set_type(...) from builtins.PyCapsule
set_type(self : rosetta.protocols.moves.Mover, setting : str) -> NoneType
test_move(...) from builtins.PyCapsule
test_move(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
: Unit test support function.  Apply one move to a given pose.
      Allows extra test specific functions to be called before applying
type(...) from builtins.PyCapsule
type(*args, **kwargs)
Overloaded function.
 
1. type(rosetta.protocols.moves.Mover) -> str
 
2. type(self : rosetta.protocols.moves.Mover, type_in : str) -> NoneType

 
class RemoveRemodelCstsCreator(rosetta.protocols.moves.MoverCreator)
    
Method resolution order:
RemoveRemodelCstsCreator
rosetta.protocols.moves.MoverCreator
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(handle) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.forge.constraints.RemoveRemodelCstsCreator,  : rosetta.protocols.forge.constraints.RemoveRemodelCstsCreator) -> rosetta.protocols.forge.constraints.RemoveRemodelCstsCreator
create_mover(...) from builtins.PyCapsule
create_mover(rosetta.protocols.forge.constraints.RemoveRemodelCstsCreator) -> rosetta.protocols.moves.Mover
keyname(...) from builtins.PyCapsule
keyname(rosetta.protocols.forge.constraints.RemoveRemodelCstsCreator) -> str
mover_name(...) from builtins.PyCapsule
mover_name() -> str