Bindings for protocols::features::strand_assembly namespace

Classes
		builtins.object SandwichFragment StrandFragment rosetta.protocols.features.FeaturesReporter(builtins.object) SandwichFeatures StrandBundleFeatures rosetta.protocols.features.FeaturesReporterCreator(builtins.object) SandwichFeaturesCreator StrandBundleFeaturesCreator   class SandwichFeatures(rosetta.protocols.features.FeaturesReporter)       Method resolution order: SandwichFeatures rosetta.protocols.features.FeaturesReporter builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.features.strand_assembly.SandwichFeatures) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.features.strand_assembly.SandwichFeatures,  : rosetta.protocols.features.strand_assembly.SandwichFeatures) -> rosetta.protocols.features.strand_assembly.SandwichFeatures features_reporter_dependencies(...) from builtins.PyCapsule features_reporter_dependencies(rosetta.protocols.features.strand_assembly.SandwichFeatures) -> rosetta.utility.vector1_std_string   return the set of features reporters that are required to also already be extracted by the time this one is used. report_features(...) from builtins.PyCapsule report_features(self : rosetta.protocols.features.strand_assembly.SandwichFeatures, pose : rosetta.core.pose.Pose, relevant_residues : rosetta.utility.vector1_bool, struct_id : int, db_session : rosetta.utility.sql_database.session) -> int   collect all the feature data for the pose type_name(...) from builtins.PyCapsule type_name(rosetta.protocols.features.strand_assembly.SandwichFeatures) -> str write_schema_to_db(...) from builtins.PyCapsule write_schema_to_db(self : rosetta.protocols.features.strand_assembly.SandwichFeatures, db_session : rosetta.utility.sql_database.session) -> NoneType   generate the table schemas and write them to the database Methods inherited from rosetta.protocols.features.FeaturesReporter: check_relevant_residues(...) from builtins.PyCapsule check_relevant_residues(*args, **kwargs) Overloaded function.   1. check_relevant_residues(self : rosetta.protocols.features.FeaturesReporter, relevant_residues : rosetta.utility.vector1_bool, res1 : int) -> bool   2. check_relevant_residues(self : rosetta.protocols.features.FeaturesReporter, relevant_residues : rosetta.utility.vector1_bool, res1 : int, res2 : int) -> bool   3. check_relevant_residues(self : rosetta.protocols.features.FeaturesReporter, relevant_residues : rosetta.utility.vector1_bool, residues : rosetta.utility.vector1_unsigned_long) -> bool check_relevant_residues_range(...) from builtins.PyCapsule check_relevant_residues_range(self : rosetta.protocols.features.FeaturesReporter, relevant_residues : rosetta.utility.vector1_bool, res1 : int, res2 : int) -> bool delete_record(...) from builtins.PyCapsule delete_record(self : rosetta.protocols.features.FeaturesReporter,  : int,  : rosetta.utility.sql_database.session) -> NoneType get_relevant_residues_mode(...) from builtins.PyCapsule get_relevant_residues_mode(rosetta.protocols.features.FeaturesReporter) -> rosetta.protocols.features.RelevantResiduesMode.T load_into_pose(...) from builtins.PyCapsule load_into_pose(self : rosetta.protocols.features.FeaturesReporter,  : rosetta.utility.sql_database.session,  : int,  : rosetta.core.pose.Pose) -> NoneType schema(...) from builtins.PyCapsule schema(rosetta.protocols.features.FeaturesReporter) -> str   return sql statements that sets up the appropriate tables to contain the features. This should be removed once everything has been moved to the schema generator set_relevant_residues_mode(...) from builtins.PyCapsule set_relevant_residues_mode(self : rosetta.protocols.features.FeaturesReporter, setting : rosetta.protocols.features.RelevantResiduesMode.T) -> NoneType   class SandwichFeaturesCreator(rosetta.protocols.features.FeaturesReporterCreator)     creator for the SandwichFeatures class     Method resolution order: SandwichFeaturesCreator rosetta.protocols.features.FeaturesReporterCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.features.strand_assembly.SandwichFeaturesCreator,  : rosetta.protocols.features.strand_assembly.SandwichFeaturesCreator) -> rosetta.protocols.features.strand_assembly.SandwichFeaturesCreator create_features_reporter(...) from builtins.PyCapsule create_features_reporter(rosetta.protocols.features.strand_assembly.SandwichFeaturesCreator) -> rosetta.protocols.features.FeaturesReporter type_name(...) from builtins.PyCapsule type_name(rosetta.protocols.features.strand_assembly.SandwichFeaturesCreator) -> str   class SandwichFragment(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : rosetta.protocols.features.strand_assembly.SandwichFragment, chain_B_resNum : int) -> NoneType   2. __init__(self : rosetta.protocols.features.strand_assembly.SandwichFragment, start : int, end : int) -> NoneType   3. __init__(self : rosetta.protocols.features.strand_assembly.SandwichFragment, sheet_id : int, start : int, end : int) -> NoneType   4. __init__(self : rosetta.protocols.features.strand_assembly.SandwichFragment, sheet_id : int, strand_id : int, start : int, end : int) -> NoneType   5. __init__(self : rosetta.protocols.features.strand_assembly.SandwichFragment, sw_can_by_sh_id : int, sheet_id : int, strand_id : int, start : int, end : int) -> NoneType   6. __init__(rosetta.protocols.features.strand_assembly.SandwichFragment) -> NoneType   7. __init__(self : rosetta.protocols.features.strand_assembly.SandwichFragment,  : rosetta.protocols.features.strand_assembly.SandwichFragment) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.features.strand_assembly.SandwichFragment,  : rosetta.protocols.features.strand_assembly.SandwichFragment) -> rosetta.protocols.features.strand_assembly.SandwichFragment get_end(...) from builtins.PyCapsule get_end(rosetta.protocols.features.strand_assembly.SandwichFragment) -> int get_resNum(...) from builtins.PyCapsule get_resNum(rosetta.protocols.features.strand_assembly.SandwichFragment) -> int get_sheet_id(...) from builtins.PyCapsule get_sheet_id(rosetta.protocols.features.strand_assembly.SandwichFragment) -> int get_size(...) from builtins.PyCapsule get_size(rosetta.protocols.features.strand_assembly.SandwichFragment) -> int get_start(...) from builtins.PyCapsule get_start(rosetta.protocols.features.strand_assembly.SandwichFragment) -> int get_strand_id(...) from builtins.PyCapsule get_strand_id(rosetta.protocols.features.strand_assembly.SandwichFragment) -> int get_sw_can_by_sh_id(...) from builtins.PyCapsule get_sw_can_by_sh_id(rosetta.protocols.features.strand_assembly.SandwichFragment) -> int   class StrandBundleFeatures(rosetta.protocols.features.FeaturesReporter)       Method resolution order: StrandBundleFeatures rosetta.protocols.features.FeaturesReporter builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.features.strand_assembly.StrandBundleFeatures,  : rosetta.protocols.features.strand_assembly.StrandBundleFeatures) -> rosetta.protocols.features.strand_assembly.StrandBundleFeatures check_strand_too_closeness(...) from builtins.PyCapsule check_strand_too_closeness(self : rosetta.protocols.features.strand_assembly.StrandBundleFeatures, pose : rosetta.core.pose.Pose, strand_i : rosetta.protocols.features.strand_assembly.StrandFragment, strand_j : rosetta.protocols.features.strand_assembly.StrandFragment) -> bool check_sw_by_dis(...) from builtins.PyCapsule check_sw_by_dis(self : rosetta.protocols.features.strand_assembly.StrandBundleFeatures, pose : rosetta.core.pose.Pose, strand_i : rosetta.protocols.features.strand_assembly.StrandFragment, strand_j : rosetta.protocols.features.strand_assembly.StrandFragment, antiparalell : bool) -> float features_reporter_dependencies(...) from builtins.PyCapsule features_reporter_dependencies(rosetta.protocols.features.strand_assembly.StrandBundleFeatures) -> rosetta.utility.vector1_std_string   return the set of features reporters that are required to also already be extracted by the time this one is used. final_check_sw_by_dis(...) from builtins.PyCapsule final_check_sw_by_dis(self : rosetta.protocols.features.strand_assembly.StrandBundleFeatures, pose : rosetta.core.pose.Pose, temp_strand_ii_i : rosetta.protocols.features.strand_assembly.StrandFragment, temp_strand_ii_j : rosetta.protocols.features.strand_assembly.StrandFragment, temp_strand_jj_i : rosetta.protocols.features.strand_assembly.StrandFragment, temp_strand_jj_j : rosetta.protocols.features.strand_assembly.StrandFragment, antiparalell : bool) -> bool find_antiparallel(...) from builtins.PyCapsule find_antiparallel(self : rosetta.protocols.features.strand_assembly.StrandBundleFeatures, pose : rosetta.core.pose.Pose, strand_i : rosetta.protocols.features.strand_assembly.StrandFragment, strand_j : rosetta.protocols.features.strand_assembly.StrandFragment) -> bool find_parallel(...) from builtins.PyCapsule find_parallel(self : rosetta.protocols.features.strand_assembly.StrandBundleFeatures, pose : rosetta.core.pose.Pose, strand_i : rosetta.protocols.features.strand_assembly.StrandFragment, strand_j : rosetta.protocols.features.strand_assembly.StrandFragment) -> bool get_avg_dis_CA_CA(...) from builtins.PyCapsule get_avg_dis_CA_CA(self : rosetta.protocols.features.strand_assembly.StrandBundleFeatures, pose : rosetta.core.pose.Pose, i_resnum : int, i_resnum_1 : int, i_resnum_2 : int, i_resnum_3 : int, j_resnum : int, j_resnum_1 : int, j_resnum_2 : int, j_resnum_3 : int) -> float get_nearest_res_from_strand(...) from builtins.PyCapsule get_nearest_res_from_strand(self : rosetta.protocols.features.strand_assembly.StrandBundleFeatures, pose : rosetta.core.pose.Pose, strand_to_be_searched : rosetta.protocols.features.strand_assembly.StrandFragment, rounded_resnum : int) -> int get_shortest_among_4(...) from builtins.PyCapsule get_shortest_among_4(self : rosetta.protocols.features.strand_assembly.StrandBundleFeatures, val_shortest_dis_sidechain_1 : float, val_shortest_dis_sidechain_2 : float, val_shortest_dis_sidechain_3 : float, val_shortest_dis_sidechain_4 : float) -> float init_from_options(...) from builtins.PyCapsule init_from_options(rosetta.protocols.features.strand_assembly.StrandBundleFeatures) -> NoneType judge_facing(...) from builtins.PyCapsule judge_facing(self : rosetta.protocols.features.strand_assembly.StrandBundleFeatures, pose : rosetta.core.pose.Pose, strand_ii_i : rosetta.protocols.features.strand_assembly.StrandFragment, strand_ii_j : rosetta.protocols.features.strand_assembly.StrandFragment, strand_jj_i : rosetta.protocols.features.strand_assembly.StrandFragment, strand_jj_j : rosetta.protocols.features.strand_assembly.StrandFragment) -> bool judge_sw_dis_too_close(...) from builtins.PyCapsule judge_sw_dis_too_close(self : rosetta.protocols.features.strand_assembly.StrandBundleFeatures, pose : rosetta.core.pose.Pose, temp_strand_ii_i : rosetta.protocols.features.strand_assembly.StrandFragment, temp_strand_ii_j : rosetta.protocols.features.strand_assembly.StrandFragment, temp_strand_jj_i : rosetta.protocols.features.strand_assembly.StrandFragment, temp_strand_jj_j : rosetta.protocols.features.strand_assembly.StrandFragment) -> bool judge_sw_inter_dis(...) from builtins.PyCapsule judge_sw_inter_dis(self : rosetta.protocols.features.strand_assembly.StrandBundleFeatures, pose : rosetta.core.pose.Pose, temp_strand_ii_i : rosetta.protocols.features.strand_assembly.StrandFragment, temp_strand_ii_j : rosetta.protocols.features.strand_assembly.StrandFragment, temp_strand_jj_i : rosetta.protocols.features.strand_assembly.StrandFragment, temp_strand_jj_j : rosetta.protocols.features.strand_assembly.StrandFragment) -> float judge_sw_torsion(...) from builtins.PyCapsule judge_sw_torsion(self : rosetta.protocols.features.strand_assembly.StrandBundleFeatures, pose : rosetta.core.pose.Pose, temp_strand_ii_i : rosetta.protocols.features.strand_assembly.StrandFragment, temp_strand_ii_j : rosetta.protocols.features.strand_assembly.StrandFragment, temp_strand_jj_i : rosetta.protocols.features.strand_assembly.StrandFragment, temp_strand_jj_j : rosetta.protocols.features.strand_assembly.StrandFragment) -> bool report_features(...) from builtins.PyCapsule report_features(self : rosetta.protocols.features.strand_assembly.StrandBundleFeatures, pose : rosetta.core.pose.Pose, relevant_residues : rosetta.utility.vector1_bool, struct_id : int, db_session : rosetta.utility.sql_database.session) -> int   collect all the feature data for the pose round(...) from builtins.PyCapsule round(self : rosetta.protocols.features.strand_assembly.StrandBundleFeatures, x : float) -> int sheet_dis_by_terminals(...) from builtins.PyCapsule sheet_dis_by_terminals(self : rosetta.protocols.features.strand_assembly.StrandBundleFeatures, pose : rosetta.core.pose.Pose, strand_i : rosetta.protocols.features.strand_assembly.StrandFragment, strand_j : rosetta.protocols.features.strand_assembly.StrandFragment) -> float sheet_torsion(...) from builtins.PyCapsule sheet_torsion(self : rosetta.protocols.features.strand_assembly.StrandBundleFeatures, pose : rosetta.core.pose.Pose, strand_i : rosetta.protocols.features.strand_assembly.StrandFragment, strand_j : rosetta.protocols.features.strand_assembly.StrandFragment) -> float shortest_dis_sidechain(...) from builtins.PyCapsule shortest_dis_sidechain(self : rosetta.protocols.features.strand_assembly.StrandBundleFeatures, pose : rosetta.core.pose.Pose, strand_i : rosetta.protocols.features.strand_assembly.StrandFragment, strand_j : rosetta.protocols.features.strand_assembly.StrandFragment) -> float type_name(...) from builtins.PyCapsule type_name(rosetta.protocols.features.strand_assembly.StrandBundleFeatures) -> str write_schema_to_db(...) from builtins.PyCapsule write_schema_to_db(self : rosetta.protocols.features.strand_assembly.StrandBundleFeatures, db_session : rosetta.utility.sql_database.session) -> NoneType   generate the table schemas and write them to the database Methods inherited from rosetta.protocols.features.FeaturesReporter: check_relevant_residues(...) from builtins.PyCapsule check_relevant_residues(*args, **kwargs) Overloaded function.   1. check_relevant_residues(self : rosetta.protocols.features.FeaturesReporter, relevant_residues : rosetta.utility.vector1_bool, res1 : int) -> bool   2. check_relevant_residues(self : rosetta.protocols.features.FeaturesReporter, relevant_residues : rosetta.utility.vector1_bool, res1 : int, res2 : int) -> bool   3. check_relevant_residues(self : rosetta.protocols.features.FeaturesReporter, relevant_residues : rosetta.utility.vector1_bool, residues : rosetta.utility.vector1_unsigned_long) -> bool check_relevant_residues_range(...) from builtins.PyCapsule check_relevant_residues_range(self : rosetta.protocols.features.FeaturesReporter, relevant_residues : rosetta.utility.vector1_bool, res1 : int, res2 : int) -> bool delete_record(...) from builtins.PyCapsule delete_record(self : rosetta.protocols.features.FeaturesReporter,  : int,  : rosetta.utility.sql_database.session) -> NoneType get_relevant_residues_mode(...) from builtins.PyCapsule get_relevant_residues_mode(rosetta.protocols.features.FeaturesReporter) -> rosetta.protocols.features.RelevantResiduesMode.T load_into_pose(...) from builtins.PyCapsule load_into_pose(self : rosetta.protocols.features.FeaturesReporter,  : rosetta.utility.sql_database.session,  : int,  : rosetta.core.pose.Pose) -> NoneType schema(...) from builtins.PyCapsule schema(rosetta.protocols.features.FeaturesReporter) -> str   return sql statements that sets up the appropriate tables to contain the features. This should be removed once everything has been moved to the schema generator set_relevant_residues_mode(...) from builtins.PyCapsule set_relevant_residues_mode(self : rosetta.protocols.features.FeaturesReporter, setting : rosetta.protocols.features.RelevantResiduesMode.T) -> NoneType   class StrandBundleFeaturesCreator(rosetta.protocols.features.FeaturesReporterCreator)     creator for the StrandBundleFeatures class     Method resolution order: StrandBundleFeaturesCreator rosetta.protocols.features.FeaturesReporterCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.features.strand_assembly.StrandBundleFeaturesCreator,  : rosetta.protocols.features.strand_assembly.StrandBundleFeaturesCreator) -> rosetta.protocols.features.strand_assembly.StrandBundleFeaturesCreator create_features_reporter(...) from builtins.PyCapsule create_features_reporter(rosetta.protocols.features.strand_assembly.StrandBundleFeaturesCreator) -> rosetta.protocols.features.FeaturesReporter type_name(...) from builtins.PyCapsule type_name(rosetta.protocols.features.strand_assembly.StrandBundleFeaturesCreator) -> str   class StrandFragment(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : rosetta.protocols.features.strand_assembly.StrandFragment, start : int, end : int) -> NoneType   2. __init__(self : rosetta.protocols.features.strand_assembly.StrandFragment, beta_selected_segments_id : int, start : int, end : int) -> NoneType   3. __init__(rosetta.protocols.features.strand_assembly.StrandFragment) -> NoneType   4. __init__(self : rosetta.protocols.features.strand_assembly.StrandFragment,  : rosetta.protocols.features.strand_assembly.StrandFragment) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.features.strand_assembly.StrandFragment,  : rosetta.protocols.features.strand_assembly.StrandFragment) -> rosetta.protocols.features.strand_assembly.StrandFragment get_end(...) from builtins.PyCapsule get_end(rosetta.protocols.features.strand_assembly.StrandFragment) -> int get_i(...) from builtins.PyCapsule get_i(rosetta.protocols.features.strand_assembly.StrandFragment) -> int get_id(...) from builtins.PyCapsule get_id(rosetta.protocols.features.strand_assembly.StrandFragment) -> int get_j(...) from builtins.PyCapsule get_j(rosetta.protocols.features.strand_assembly.StrandFragment) -> int get_pdb_source(...) from builtins.PyCapsule get_pdb_source(rosetta.protocols.features.strand_assembly.StrandFragment) -> str get_size(...) from builtins.PyCapsule get_size(rosetta.protocols.features.strand_assembly.StrandFragment) -> int get_start(...) from builtins.PyCapsule get_start(rosetta.protocols.features.strand_assembly.StrandFragment) -> int set_pdb_source(...) from builtins.PyCapsule set_pdb_source(self : rosetta.protocols.features.strand_assembly.StrandFragment, pdb_source_ : str) -> NoneType

Functions
		WriteToDB_AA_to_terminal_loops(...) method of builtins.PyCapsule instance WriteToDB_AA_to_terminal_loops(struct_id : int, db_session : rosetta.utility.sql_database.session, dssp_pose : rosetta.core.pose.Pose, sandwich_PK_id_counter : int, sw_can_by_sh_id : int, tag : str, starting_loop : bool, residue_begin : int, residue_end : int) -> NoneType WriteToDB_avg_b_factor_CB_at_each_component(...) method of builtins.PyCapsule instance WriteToDB_avg_b_factor_CB_at_each_component(struct_id : int, db_session : rosetta.utility.sql_database.session, pose : rosetta.core.pose.Pose, sw_can_by_sh_id : int) -> int WriteToDB_dihedral_angle_between_core_strands_across_facing_sheets(...) method of builtins.PyCapsule instance WriteToDB_dihedral_angle_between_core_strands_across_facing_sheets(struct_id : int, db_session : rosetta.utility.sql_database.session, pose : rosetta.core.pose.Pose, sw_can_by_sh_id : int) -> int WriteToDB_dssp_ratio_in_sw(...) method of builtins.PyCapsule instance WriteToDB_dssp_ratio_in_sw(struct_id : int, db_session : rosetta.utility.sql_database.session, dssp_pose : rosetta.core.pose.Pose, sw_can_by_sh_id : int) -> int WriteToDB_ending_loop(...) method of builtins.PyCapsule instance WriteToDB_ending_loop(struct_id : int, db_session : rosetta.utility.sql_database.session, dssp_pose : rosetta.core.pose.Pose, sandwich_PK_id_counter : int, sw_can_by_sh_id : int, tag : str, max_starting_loop_size_ : int) -> int WriteToDB_hydrophobic_ratio_net_charge(...) method of builtins.PyCapsule instance WriteToDB_hydrophobic_ratio_net_charge(struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int) -> int WriteToDB_long_strand_id_in_each_sw(...) method of builtins.PyCapsule instance WriteToDB_long_strand_id_in_each_sw(struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int) -> int WriteToDB_min_avg_dis_between_sheets_by_cen_res(...) method of builtins.PyCapsule instance WriteToDB_min_avg_dis_between_sheets_by_cen_res(struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int, dssp_pose : rosetta.core.pose.Pose, all_distinct_sheet_ids : rosetta.utility.vector1_unsigned_long, min_num_strands_in_sheet_ : int) -> int WriteToDB_min_dis_between_sheets_by_all_res(...) method of builtins.PyCapsule instance WriteToDB_min_dis_between_sheets_by_all_res(struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int, dssp_pose : rosetta.core.pose.Pose, all_distinct_sheet_ids : rosetta.utility.vector1_unsigned_long) -> int WriteToDB_number_of_core_heading_FWY_in_sw(...) method of builtins.PyCapsule instance WriteToDB_number_of_core_heading_FWY_in_sw(struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int) -> NoneType WriteToDB_number_of_core_heading_LWY_in_core_strands_in_sw(...) method of builtins.PyCapsule instance WriteToDB_number_of_core_heading_LWY_in_core_strands_in_sw(struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int) -> int WriteToDB_number_of_core_heading_W_in_sw(...) method of builtins.PyCapsule instance WriteToDB_number_of_core_heading_W_in_sw(struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int) -> NoneType WriteToDB_number_of_core_heading_aro_AAs_in_a_pair_of_edge_strands(...) method of builtins.PyCapsule instance WriteToDB_number_of_core_heading_aro_AAs_in_a_pair_of_edge_strands(struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int, current_bs_id : int, closest_bs_id : int) -> int WriteToDB_number_of_core_heading_charged_AAs_in_a_pair_of_edge_strands(...) method of builtins.PyCapsule instance WriteToDB_number_of_core_heading_charged_AAs_in_a_pair_of_edge_strands(struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int, current_bs_id : int, closest_bs_id : int) -> int WriteToDB_number_of_edge_strands_in_each_sw(...) method of builtins.PyCapsule instance WriteToDB_number_of_edge_strands_in_each_sw(struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int) -> int WriteToDB_number_of_sheets_that_surround_this_sheet(...) method of builtins.PyCapsule instance WriteToDB_number_of_sheets_that_surround_this_sheet(struct_id : int, db_session : rosetta.utility.sql_database.session, sheet_id : int, num_of_sheets_that_surround_this_sheet : int) -> int WriteToDB_number_strands_in_each_sw(...) method of builtins.PyCapsule instance WriteToDB_number_strands_in_each_sw(struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int) -> int WriteToDB_prolines_that_seem_to_prevent_aggregation(...) method of builtins.PyCapsule instance WriteToDB_prolines_that_seem_to_prevent_aggregation(struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int, wt_for_pro_in_starting_loop_ : float, wt_for_pro_in_1st_inter_sheet_loop_ : float, wt_for_pro_in_3rd_inter_sheet_loop_ : float) -> int WriteToDB_ratio_of_core_heading_FWY_in_sw(...) method of builtins.PyCapsule instance WriteToDB_ratio_of_core_heading_FWY_in_sw(struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int, pose : rosetta.core.pose.Pose) -> int WriteToDB_rkde(...) method of builtins.PyCapsule instance WriteToDB_rkde(struct_id : int, db_session : rosetta.utility.sql_database.session, rkde_PK_id_counter : int, tag : str, residue_number : int, residue_type : str) -> int WriteToDB_rkde_in_strands(...) method of builtins.PyCapsule instance WriteToDB_rkde_in_strands(struct_id : int, db_session : rosetta.utility.sql_database.session, rkde_in_strands_PK_id_counter : int, tag : str, sw_can_by_sh_id : int, residue_number : int, residue_type : str, heading_direction : str) -> int WriteToDB_sandwich(...) method of builtins.PyCapsule instance WriteToDB_sandwich(struct_id : int, db_session : rosetta.utility.sql_database.session, pose : rosetta.core.pose.Pose, sandwich_PK_id_counter : int, tag : str, sw_can_by_sh_id : int, sheet_id : int, sheet_antiparellel : str, sandwich_bs_id : int, strand_is_at_edge : str, component_size : int, residue_begin : int, residue_end : int) -> int WriteToDB_sandwich_by_AA_w_direction(...) method of builtins.PyCapsule instance WriteToDB_sandwich_by_AA_w_direction(struct_id : int, db_session : rosetta.utility.sql_database.session, pose : rosetta.core.pose.Pose, pose_w_center_000 : rosetta.core.pose.Pose, sw_can_by_sh_id : int, sheet_id : int, residue_begin : int, residue_end : int) -> int WriteToDB_sheet(...) method of builtins.PyCapsule instance WriteToDB_sheet(struct_id : int, db_session : rosetta.utility.sql_database.session, sheet_PK_id_counter : int, sheet_id : int, segment_id : int) -> int WriteToDB_sheet_antiparallel(...) method of builtins.PyCapsule instance WriteToDB_sheet_antiparallel(struct_id : int, db_session : rosetta.utility.sql_database.session, sheet_id : int, antiparallel : str) -> int WriteToDB_sheet_connectivity(...) method of builtins.PyCapsule instance WriteToDB_sheet_connectivity(struct_id : int, db_session : rosetta.utility.sql_database.session, pose : rosetta.core.pose.Pose, sandwich_PK_id_counter : int, tag : str, sw_can_by_sh_id : int, loop_kind : str, intra_sheet_con_id : int, inter_sheet_con_id : int, LR : str, cano_LR : str, PA_by_preceding_E : str, PA_by_following_E : str, cano_PA : str, heading_direction : str, heading_parallel : str, cano_parallel_EE : str, loop_size : int, start_res : int, end_res : int) -> int WriteToDB_sheet_id(...) method of builtins.PyCapsule instance WriteToDB_sheet_id(struct_id : int, db_session : rosetta.utility.sql_database.session, new_sheet_id : int, old_sheet_id : int) -> int WriteToDB_shortest_dis_between_facing_aro_in_sw(...) method of builtins.PyCapsule instance WriteToDB_shortest_dis_between_facing_aro_in_sw(struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int, pose : rosetta.core.pose.Pose, all_distinct_sheet_ids : rosetta.utility.vector1_unsigned_long, min_num_strands_in_sheet_ : int) -> float WriteToDB_starting_loop(...) method of builtins.PyCapsule instance WriteToDB_starting_loop(struct_id : int, db_session : rosetta.utility.sql_database.session, dssp_pose : rosetta.core.pose.Pose, sandwich_PK_id_counter : int, sw_can_by_sh_id : int, tag : str, max_starting_loop_size_ : int) -> int WriteToDB_sw_can_by_sh(...) method of builtins.PyCapsule instance WriteToDB_sw_can_by_sh(struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_PK_id_counter : int, tag : str, sw_can_by_sh_id_counter : int, sheet_id : int, num_strands_from_sheet : int) -> int WriteToDB_sw_res_size(...) method of builtins.PyCapsule instance WriteToDB_sw_res_size(struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int) -> int WriteToDB_topology_candidate(...) method of builtins.PyCapsule instance WriteToDB_topology_candidate(struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int) -> int WriteToDB_turn_AA(...) method of builtins.PyCapsule instance WriteToDB_turn_AA(pose : rosetta.core.pose.Pose, sw_can_by_sh_id : int, i : int, struct_id : int, db_session : rosetta.utility.sql_database.session, turn_type : str) -> NoneType WriteToDB_turn_type(...) method of builtins.PyCapsule instance WriteToDB_turn_type(pose : rosetta.core.pose.Pose, sw_can_by_sh_id : int, start_res : int, end_res : int, struct_id : int, db_session : rosetta.utility.sql_database.session, allowed_deviation_for_turn_type_id_ : float) -> str WriteToDB_whether_sw_is_not_connected_with_continuous_atoms(...) method of builtins.PyCapsule instance WriteToDB_whether_sw_is_not_connected_with_continuous_atoms(struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int, sw_is_not_connected_with_continuous_atoms : str) -> int absolute_vec(...) method of builtins.PyCapsule instance absolute_vec(vector : rosetta.numeric.xyzVector_double_t) -> float cal_dis_angle_to_find_sheet(...) method of builtins.PyCapsule instance cal_dis_angle_to_find_sheet(pose : rosetta.core.pose.Pose, res_i_0 : int, res_i_1 : int, res_i_2 : int, res_j_0 : int, res_j_1 : int, res_j_2 : int) -> rosetta.std.vector_double cal_min_avg_dis_between_sheets_by_cen_res(...) method of builtins.PyCapsule instance cal_min_avg_dis_between_sheets_by_cen_res(struct_id : int, db_session : rosetta.utility.sql_database.session, dssp_pose : rosetta.core.pose.Pose, all_distinct_sheet_ids : rosetta.utility.vector1_unsigned_long, min_num_strands_in_sheet_ : int) -> (float, float) cal_min_avg_dis_between_two_sheets_by_cen_res(...) method of builtins.PyCapsule instance cal_min_avg_dis_between_two_sheets_by_cen_res(struct_id : int, db_session : rosetta.utility.sql_database.session, dssp_pose : rosetta.core.pose.Pose, sheet_id_1 : int, sheet_id_2 : int) -> (float, float) cal_min_dis_between_sheets_by_all_res(...) method of builtins.PyCapsule instance cal_min_dis_between_sheets_by_all_res(struct_id : int, db_session : rosetta.utility.sql_database.session, dssp_pose : rosetta.core.pose.Pose, all_distinct_sheet_ids : rosetta.utility.vector1_unsigned_long) -> float cal_min_dis_between_two_sheets_by_all_res(...) method of builtins.PyCapsule instance cal_min_dis_between_two_sheets_by_all_res(struct_id : int, db_session : rosetta.utility.sql_database.session, dssp_pose : rosetta.core.pose.Pose, sheet_id_1 : int, sheet_id_2 : int) -> float cal_num_of_sheets_that_surround_this_sheet(...) method of builtins.PyCapsule instance cal_num_of_sheets_that_surround_this_sheet(struct_id : int, db_session : rosetta.utility.sql_database.session, dssp_pose : rosetta.core.pose.Pose, all_distinct_sheet_ids : rosetta.utility.vector1_unsigned_long, sheet_id : int, min_num_strands_in_sheet_ : int, inter_sheet_distance_to_see_whether_a_sheet_is_surrounded_by_other_sheets_ : float) -> int cal_shortest_dis_between_facing_aro_in_sw(...) method of builtins.PyCapsule instance cal_shortest_dis_between_facing_aro_in_sw(struct_id : int, db_session : rosetta.utility.sql_database.session, pose : rosetta.core.pose.Pose, all_distinct_sheet_ids : rosetta.utility.vector1_unsigned_long, min_num_strands_in_sheet_ : int) -> float calculate_dihedral_w_4_resnums(...) method of builtins.PyCapsule instance calculate_dihedral_w_4_resnums(pose : rosetta.core.pose.Pose, res1_sheet_i : int, res2_sheet_i : int, res1_sheet_j : int, res2_sheet_j : int) -> float change_sheet_id_if_possible(...) method of builtins.PyCapsule instance change_sheet_id_if_possible(struct_id : int, db_session : rosetta.utility.sql_database.session, pose : rosetta.core.pose.Pose, min_CA_CA_dis_ : float, max_CA_CA_dis_ : float, min_C_O_N_angle_ : float) -> bool check_LR(...) method of builtins.PyCapsule instance check_LR(dssp_pose : rosetta.core.pose.Pose, preceding_E : int, following_E : int) -> str check_PA(...) method of builtins.PyCapsule instance check_PA(dssp_pose : rosetta.core.pose.Pose, residue_begin : int, residue_end : int) -> (str, str) check_canonicalness_of_LR(...) method of builtins.PyCapsule instance check_canonicalness_of_LR(loop_size : int, intra_sheet : bool, LR : str) -> str check_canonicalness_of_PA(...) method of builtins.PyCapsule instance check_canonicalness_of_PA(loop_size : int, intra_sheet : bool, PA_by_preceding_E : str, PA_by_following_E : str, check_canonicalness_cutoff_ : float) -> str check_canonicalness_of_parallel_EE(...) method of builtins.PyCapsule instance check_canonicalness_of_parallel_EE(loop_size : int, intra_sheet : bool, parallel_EE : str) -> str check_heading_direction(...) method of builtins.PyCapsule instance check_heading_direction(dssp_pose : rosetta.core.pose.Pose, preceding_E : int, following_E : int, check_heading_direction_by_ : str) -> str check_helix_existence(...) method of builtins.PyCapsule instance check_helix_existence(pose : rosetta.core.pose.Pose) -> bool check_strand_too_closeness(...) method of builtins.PyCapsule instance check_strand_too_closeness(pose : rosetta.core.pose.Pose, strand_i : rosetta.protocols.features.strand_assembly.SandwichFragment, strand_j : rosetta.protocols.features.strand_assembly.SandwichFragment, min_inter_sheet_dis_CA_CA_ : float) -> bool check_sw_by_dis(...) method of builtins.PyCapsule instance check_sw_by_dis(pose : rosetta.core.pose.Pose, strand_i : rosetta.protocols.features.strand_assembly.SandwichFragment, strand_j : rosetta.protocols.features.strand_assembly.SandwichFragment, antiparalell : bool, min_sheet_dis_ : float, max_sheet_dis_ : float) -> float check_whether_hairpin_connects_short_strand(...) method of builtins.PyCapsule instance check_whether_hairpin_connects_short_strand(struct_id : int, db_session : rosetta.utility.sql_database.session, start_res : int, next_start_res : int) -> bool check_whether_same_direction_strands_connect_two_sheets_or_a_loop(...) method of builtins.PyCapsule instance check_whether_same_direction_strands_connect_two_sheets_or_a_loop(struct_id : int, db_session : rosetta.utility.sql_database.session, pose : rosetta.core.pose.Pose, start_res : int, next_start_res : int) -> bool check_whether_sheets_are_connected_with_near_bb_atoms(...) method of builtins.PyCapsule instance check_whether_sheets_are_connected_with_near_bb_atoms(struct_id : int, db_session : rosetta.utility.sql_database.session, dssp_pose : rosetta.core.pose.Pose, sw_can_by_sh_id : int, min_N_O_dis_between_two_sheets_ : float, min_N_H_O_angle_between_two_sheets_ : float) -> bool check_whether_strand_i_is_in_sheet(...) method of builtins.PyCapsule instance check_whether_strand_i_is_in_sheet(struct_id : int, db_session : rosetta.utility.sql_database.session, segment_id : int) -> bool check_whether_sw_by_sh_id_still_alive(...) method of builtins.PyCapsule instance check_whether_sw_by_sh_id_still_alive(struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int) -> bool check_whether_sw_is_not_connected_with_continuous_atoms(...) method of builtins.PyCapsule instance check_whether_sw_is_not_connected_with_continuous_atoms(struct_id : int, db_session : rosetta.utility.sql_database.session, dssp_pose : rosetta.core.pose.Pose, sw_can_by_sh_id : int) -> str check_whether_this_pdb_should_be_excluded(...) method of builtins.PyCapsule instance check_whether_this_pdb_should_be_excluded(tag : str) -> bool check_whether_this_sheet_is_too_short(...) method of builtins.PyCapsule instance check_whether_this_sheet_is_too_short(struct_id : int, db_session : rosetta.utility.sql_database.session, sheet_i : int) -> bool count_AA_w_direction(...) method of builtins.PyCapsule instance count_AA_w_direction(struct_id : int, db_session : rosetta.utility.sql_database.session, pose : rosetta.core.pose.Pose, pose_w_center_000 : rosetta.core.pose.Pose, sw_can_by_sh_id : int, sheet_id : int, residue_begin : int, residue_end : int) -> rosetta.std.vector_unsigned_long count_AA_wo_direction(...) method of builtins.PyCapsule instance count_AA_wo_direction(pose : rosetta.core.pose.Pose, residue_begin : int, residue_end : int) -> rosetta.std.vector_unsigned_long delete_this_struct_id(...) method of builtins.PyCapsule instance delete_this_struct_id(struct_id : int, db_session : rosetta.utility.sql_database.session) -> int delete_this_sw_can_by_sh_id_from_sw_by_comp(...) method of builtins.PyCapsule instance delete_this_sw_can_by_sh_id_from_sw_by_comp(struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int) -> int determine_core_heading_surface_heading_by_distance(...) method of builtins.PyCapsule instance determine_core_heading_surface_heading_by_distance(pose_w_center_000 : rosetta.core.pose.Pose, residue_num : int) -> str determine_heading_direction_by_vector(...) method of builtins.PyCapsule instance determine_heading_direction_by_vector(struct_id : int, db_session : rosetta.utility.sql_database.session, pose : rosetta.core.pose.Pose, sw_can_by_sh_id : int, sheet_id : int, residue_begin : int, residue_end : int, ii : int) -> str find_sheet(...) method of builtins.PyCapsule instance find_sheet(pose : rosetta.core.pose.Pose, strand_i : rosetta.protocols.features.strand_assembly.SandwichFragment, strand_j : rosetta.protocols.features.strand_assembly.SandwichFragment, antiparalell : bool, min_CA_CA_dis_ : float, max_CA_CA_dis_ : float, min_C_O_N_angle_ : float, care_smaller_sheet : bool) -> int get_all_residues_in_this_sheet(...) method of builtins.PyCapsule instance get_all_residues_in_this_sheet(struct_id : int, db_session : rosetta.utility.sql_database.session, sheet_id : int) -> rosetta.std.vector_unsigned_long get_aro_residues_in_this_sheet(...) method of builtins.PyCapsule instance get_aro_residues_in_this_sheet(struct_id : int, db_session : rosetta.utility.sql_database.session, pose : rosetta.core.pose.Pose, sheet_id : int) -> rosetta.std.vector_unsigned_long get_avg_dis_CA_CA(...) method of builtins.PyCapsule instance get_avg_dis_CA_CA(pose : rosetta.core.pose.Pose, i_resnum : int, i_resnum_1 : int, i_resnum_2 : int, i_resnum_3 : int, j_resnum : int, j_resnum_1 : int, j_resnum_2 : int, j_resnum_3 : int, min_sheet_dis_ : float, max_sheet_dis_ : float) -> float get_avg_dis_strands(...) method of builtins.PyCapsule instance get_avg_dis_strands(pose : rosetta.core.pose.Pose, strand_i : rosetta.protocols.features.strand_assembly.SandwichFragment, strand_j : rosetta.protocols.features.strand_assembly.SandwichFragment) -> float get_central_residues_in_each_of_two_edge_strands(...) method of builtins.PyCapsule instance get_central_residues_in_each_of_two_edge_strands(struct_id : int, db_session : rosetta.utility.sql_database.session, pose : rosetta.core.pose.Pose, sheet_i : int, min_CA_CA_dis_ : float, max_CA_CA_dis_ : float) -> (int, int) get_central_residues_in_other_sheet(...) method of builtins.PyCapsule instance get_central_residues_in_other_sheet(struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int, sheet_id : int) -> rosetta.std.vector_unsigned_long get_central_residues_in_this_sheet(...) method of builtins.PyCapsule instance get_central_residues_in_this_sheet(struct_id : int, db_session : rosetta.utility.sql_database.session, sheet_id : int) -> rosetta.std.vector_unsigned_long get_chain_B_resNum(...) method of builtins.PyCapsule instance get_chain_B_resNum(struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int) -> rosetta.utility.vector1_unsigned_long get_closest_distance_between_strands(...) method of builtins.PyCapsule instance get_closest_distance_between_strands(pose : rosetta.core.pose.Pose, strand_i : rosetta.protocols.features.strand_assembly.SandwichFragment, strand_j : rosetta.protocols.features.strand_assembly.SandwichFragment) -> float get_current_bs_id_and_closest_edge_bs_id_in_different_sheet(...) method of builtins.PyCapsule instance get_current_bs_id_and_closest_edge_bs_id_in_different_sheet(struct_id : int, db_session : rosetta.utility.sql_database.session, pose : rosetta.core.pose.Pose, sw_can_by_sh_id : int, sheet_id : int, residue_begin : int, residue_end : int) -> (int, int) get_distinct_sheet_id_from_sheet_table(...) method of builtins.PyCapsule instance get_distinct_sheet_id_from_sheet_table(struct_id : int, db_session : rosetta.utility.sql_database.session) -> rosetta.utility.vector1_unsigned_long get_distinct_sw_id_from_sandwich_table(...) method of builtins.PyCapsule instance get_distinct_sw_id_from_sandwich_table(struct_id : int, db_session : rosetta.utility.sql_database.session) -> rosetta.utility.vector1_unsigned_long get_max_sheet_id(...) method of builtins.PyCapsule instance get_max_sheet_id(struct_id : int, db_session : rosetta.utility.sql_database.session) -> int get_next_starting_res_for_connecting_strands(...) method of builtins.PyCapsule instance get_next_starting_res_for_connecting_strands(struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int, former_ending_res : int) -> (int, int) get_num_of_distinct_sheet_id(...) method of builtins.PyCapsule instance get_num_of_distinct_sheet_id(struct_id : int, db_session : rosetta.utility.sql_database.session) -> int get_num_of_sheets_that_surround_this_sheet(...) method of builtins.PyCapsule instance get_num_of_sheets_that_surround_this_sheet(struct_id : int, db_session : rosetta.utility.sql_database.session, sheet_id : int) -> int get_num_strands_in_this_sheet(...) method of builtins.PyCapsule instance get_num_strands_in_this_sheet(struct_id : int, db_session : rosetta.utility.sql_database.session, sheet_id : int) -> int get_segment_id(...) method of builtins.PyCapsule instance get_segment_id(struct_id : int, db_session : rosetta.utility.sql_database.session, all_strands_index : int) -> int get_sheet_antiparallel_info(...) method of builtins.PyCapsule instance get_sheet_antiparallel_info(struct_id : int, db_session : rosetta.utility.sql_database.session, sheet_id : int) -> str get_size_sandwich_PK_id(...) method of builtins.PyCapsule instance get_size_sandwich_PK_id(struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int) -> int get_starting_res_for_connecting_strands(...) method of builtins.PyCapsule instance get_starting_res_for_connecting_strands(struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int, former_res_end : int) -> (int, int) get_tag(...) method of builtins.PyCapsule instance get_tag(struct_id : int, db_session : rosetta.utility.sql_database.session) -> str get_vec_AA_kind(...) method of builtins.PyCapsule instance get_vec_AA_kind(struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int) -> rosetta.utility.vector1_unsigned_long get_vec_distinct_sheet_id(...) method of builtins.PyCapsule instance get_vec_distinct_sheet_id(struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int) -> rosetta.utility.vector1_unsigned_long get_vec_of_sw_can_by_sh_id(...) method of builtins.PyCapsule instance get_vec_of_sw_can_by_sh_id(struct_id : int, db_session : rosetta.utility.sql_database.session) -> rosetta.utility.vector1_unsigned_long get_vector_of_loop_AA_distribution(...) method of builtins.PyCapsule instance get_vector_of_loop_AA_distribution(struct_id : int, db_session : rosetta.utility.sql_database.session, loop_kind : str) -> rosetta.utility.vector1_unsigned_long get_vector_of_strand_AA_distribution(...) method of builtins.PyCapsule instance get_vector_of_strand_AA_distribution(struct_id : int, db_session : rosetta.utility.sql_database.session, heading_direction : str, strand_location : str) -> rosetta.utility.vector1_unsigned_long identify_sheet_id_by_residue_end(...) method of builtins.PyCapsule instance identify_sheet_id_by_residue_end(struct_id : int, db_session : rosetta.utility.sql_database.session, residue_end : int) -> int is_this_strand_at_edge(...) method of builtins.PyCapsule instance is_this_strand_at_edge(pose : rosetta.core.pose.Pose, struct_id : int, db_session : rosetta.utility.sql_database.session, sheet_id : int, residue_begin : int, residue_end : int, min_CA_CA_dis_ : float, max_CA_CA_dis_ : float) -> str is_this_strand_at_edge_by_looking_db(...) method of builtins.PyCapsule instance is_this_strand_at_edge_by_looking_db(struct_id : int, db_session : rosetta.utility.sql_database.session, residue_begin : int) -> str judge_facing(...) method of builtins.PyCapsule instance judge_facing(struct_id : int, db_session : rosetta.utility.sql_database.session, pose : rosetta.core.pose.Pose, sheet_i : int, sheet_j : int, min_CA_CA_dis_ : float, max_CA_CA_dis_ : float, min_sheet_angle_by_four_term_cen_res_ : float, max_sheet_angle_by_four_term_cen_res_ : float, min_sheet_torsion_cen_res_ : float, max_sheet_torsion_cen_res_ : float, max_sheet_angle_with_cen_res_in_smaller_sheet_and_two_terminal_res_in_larger_sheet_ : float) -> int process_decoy(...) method of builtins.PyCapsule instance process_decoy(dssp_pose : rosetta.core.pose.Pose,  : rosetta.core.scoring.ScoreFunction) -> NoneType report_heading_directions_of_all_AA_in_a_strand(...) method of builtins.PyCapsule instance report_heading_directions_of_all_AA_in_a_strand(struct_id : int, db_session : rosetta.utility.sql_database.session, pose : rosetta.core.pose.Pose, sw_can_by_sh_id : int, sheet_id : int, residue_begin : int, residue_end : int) -> str retrieve_residue_num_of_rkde(...) method of builtins.PyCapsule instance retrieve_residue_num_of_rkde(struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int, dssp_code : str, heading_direction : str) -> rosetta.utility.vector1_int round_to_Real(...) method of builtins.PyCapsule instance round_to_Real(x : float) -> float round_to_Size(...) method of builtins.PyCapsule instance round_to_Size(x : float) -> int round_to_float(...) method of builtins.PyCapsule instance round_to_float(x : float) -> float see_edge_or_core_or_loop_or_short_edge(...) method of builtins.PyCapsule instance see_edge_or_core_or_loop_or_short_edge(struct_id : int, db_session : rosetta.utility.sql_database.session, residue_num : int) -> str see_whether_sheet_is_antiparallel(...) method of builtins.PyCapsule instance see_whether_sheet_is_antiparallel(struct_id : int, db_session : rosetta.utility.sql_database.session, pose : rosetta.core.pose.Pose, i_sheet : int, min_CA_CA_dis_ : float, max_CA_CA_dis_ : float, min_C_O_N_angle_ : float) -> str see_whether_sheets_can_be_combined(...) method of builtins.PyCapsule instance see_whether_sheets_can_be_combined(struct_id : int, db_session : rosetta.utility.sql_database.session, pose : rosetta.core.pose.Pose, i_sheet : int, j_sheet : int, min_CA_CA_dis_ : float, max_CA_CA_dis_ : float, min_C_O_N_angle_ : float) -> bool see_whether_this_sw_has_SS_bond(...) method of builtins.PyCapsule instance see_whether_this_sw_has_SS_bond(struct_id : int, db_session : rosetta.utility.sql_database.session) -> bool write_AA_distribution_with_direction_to_a_file(...) method of builtins.PyCapsule instance write_AA_distribution_with_direction_to_a_file(tag : str, struct_id : int, db_session : rosetta.utility.sql_database.session) -> int write_AA_distribution_without_direction_to_a_file(...) method of builtins.PyCapsule instance write_AA_distribution_without_direction_to_a_file(tag : str, struct_id : int, db_session : rosetta.utility.sql_database.session) -> int write_AA_kind_to_a_file(...) method of builtins.PyCapsule instance write_AA_kind_to_a_file(tag : str, struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int, sw_res_size : int) -> int write_chain_B_resNum_to_a_file(...) method of builtins.PyCapsule instance write_chain_B_resNum_to_a_file(tag : str, struct_id : int, db_session : rosetta.utility.sql_database.session, sw_can_by_sh_id : int) -> int write_number_of_electrostatic_interactions_of_residues_to_files(...) method of builtins.PyCapsule instance write_number_of_electrostatic_interactions_of_residues_to_files(tag : str, struct_id : int, db_session : rosetta.utility.sql_database.session, pose : rosetta.core.pose.Pose, dssp_code : str, heading_direction : str, distance_cutoff_for_electrostatic_interactions_ : float, CB_b_factor_cutoff_for_electrostatic_interactions_ : float, min_primary_seq_distance_diff_for_electrostatic_interactions_ : int) -> int write_p_aa_pp_of_AAs_to_a_file(...) method of builtins.PyCapsule instance write_p_aa_pp_of_AAs_to_a_file(tag : str, dssp_pose : rosetta.core.pose.Pose) -> int write_rama_of_AAs_to_a_file(...) method of builtins.PyCapsule instance write_rama_of_AAs_to_a_file(tag : str, dssp_pose : rosetta.core.pose.Pose) -> int