Bindings for protocols::features::helixAssembly namespace

Classes
		builtins.object FragmentPair HelicalFragment rosetta.protocols.features.FeaturesReporter(builtins.object) ConcurrencyTest HelixBundleFeatures rosetta.protocols.features.FeaturesReporterCreator(builtins.object) ConcurrencyTestCreator HelixBundleFeaturesCreator   class ConcurrencyTest(rosetta.protocols.features.FeaturesReporter)       Method resolution order: ConcurrencyTest rosetta.protocols.features.FeaturesReporter builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.features.helixAssembly.ConcurrencyTest,  : rosetta.protocols.features.helixAssembly.ConcurrencyTest) -> rosetta.protocols.features.helixAssembly.ConcurrencyTest report_features(...) from builtins.PyCapsule report_features(self : rosetta.protocols.features.helixAssembly.ConcurrencyTest, pose : rosetta.core.pose.Pose, relevant_residues : rosetta.utility.vector1_bool, struct_id : int, db_session : rosetta.utility.sql_database.session) -> int   collect all the feature data for the pose type_name(...) from builtins.PyCapsule type_name(rosetta.protocols.features.helixAssembly.ConcurrencyTest) -> str write_schema_to_db(...) from builtins.PyCapsule write_schema_to_db(self : rosetta.protocols.features.helixAssembly.ConcurrencyTest, db_session : rosetta.utility.sql_database.session) -> NoneType   generate the table schemas and write them to the database Methods inherited from rosetta.protocols.features.FeaturesReporter: check_relevant_residues(...) from builtins.PyCapsule check_relevant_residues(*args, **kwargs) Overloaded function.   1. check_relevant_residues(self : rosetta.protocols.features.FeaturesReporter, relevant_residues : rosetta.utility.vector1_bool, res1 : int) -> bool   2. check_relevant_residues(self : rosetta.protocols.features.FeaturesReporter, relevant_residues : rosetta.utility.vector1_bool, res1 : int, res2 : int) -> bool   3. check_relevant_residues(self : rosetta.protocols.features.FeaturesReporter, relevant_residues : rosetta.utility.vector1_bool, residues : rosetta.utility.vector1_unsigned_long) -> bool check_relevant_residues_range(...) from builtins.PyCapsule check_relevant_residues_range(self : rosetta.protocols.features.FeaturesReporter, relevant_residues : rosetta.utility.vector1_bool, res1 : int, res2 : int) -> bool delete_record(...) from builtins.PyCapsule delete_record(self : rosetta.protocols.features.FeaturesReporter,  : int,  : rosetta.utility.sql_database.session) -> NoneType features_reporter_dependencies(...) from builtins.PyCapsule features_reporter_dependencies(rosetta.protocols.features.FeaturesReporter) -> rosetta.utility.vector1_std_string   return the set of features reporters that are required to also already be extracted by the time this one is used. get_relevant_residues_mode(...) from builtins.PyCapsule get_relevant_residues_mode(rosetta.protocols.features.FeaturesReporter) -> rosetta.protocols.features.RelevantResiduesMode.T load_into_pose(...) from builtins.PyCapsule load_into_pose(self : rosetta.protocols.features.FeaturesReporter,  : rosetta.utility.sql_database.session,  : int,  : rosetta.core.pose.Pose) -> NoneType schema(...) from builtins.PyCapsule schema(rosetta.protocols.features.FeaturesReporter) -> str   return sql statements that sets up the appropriate tables to contain the features. This should be removed once everything has been moved to the schema generator set_relevant_residues_mode(...) from builtins.PyCapsule set_relevant_residues_mode(self : rosetta.protocols.features.FeaturesReporter, setting : rosetta.protocols.features.RelevantResiduesMode.T) -> NoneType   class ConcurrencyTestCreator(rosetta.protocols.features.FeaturesReporterCreator)     creator for the HelixBundleFeatures class     Method resolution order: ConcurrencyTestCreator rosetta.protocols.features.FeaturesReporterCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.features.helixAssembly.ConcurrencyTestCreator,  : rosetta.protocols.features.helixAssembly.ConcurrencyTestCreator) -> rosetta.protocols.features.helixAssembly.ConcurrencyTestCreator create_features_reporter(...) from builtins.PyCapsule create_features_reporter(rosetta.protocols.features.helixAssembly.ConcurrencyTestCreator) -> rosetta.protocols.features.FeaturesReporter type_name(...) from builtins.PyCapsule type_name(rosetta.protocols.features.helixAssembly.ConcurrencyTestCreator) -> str   class FragmentPair(builtins.object)       Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.protocols.features.helixAssembly.FragmentPair, other : rosetta.protocols.features.helixAssembly.FragmentPair) -> bool __init__(...) from builtins.PyCapsule __init__(self : rosetta.protocols.features.helixAssembly.FragmentPair, frag1 : rosetta.protocols.features.helixAssembly.HelicalFragment, frag2 : rosetta.protocols.features.helixAssembly.HelicalFragment) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. Data descriptors defined here: crossing_angle end_1_distance end_2_distance fa_attr fa_fraction fragment_1 fragment_2   class HelicalFragment(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.protocols.features.helixAssembly.HelicalFragment) -> NoneType   2. __init__(self : rosetta.protocols.features.helixAssembly.HelicalFragment, start : int, end : int) -> NoneType   3. __init__(self : rosetta.protocols.features.helixAssembly.HelicalFragment,  : rosetta.protocols.features.helixAssembly.HelicalFragment) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. __str__(...) from builtins.PyCapsule __str__(rosetta.protocols.features.helixAssembly.HelicalFragment) -> str assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.features.helixAssembly.HelicalFragment,  : rosetta.protocols.features.helixAssembly.HelicalFragment) -> rosetta.protocols.features.helixAssembly.HelicalFragment com(...) from builtins.PyCapsule com(*args, **kwargs) Overloaded function.   1. com(self : rosetta.protocols.features.helixAssembly.HelicalFragment, com : rosetta.numeric.xyzVector_double_t) -> NoneType   2. com(rosetta.protocols.features.helixAssembly.HelicalFragment) -> rosetta.numeric.xyzVector_double_t end(...) from builtins.PyCapsule end(rosetta.protocols.features.helixAssembly.HelicalFragment) -> int p0(...) from builtins.PyCapsule p0(*args, **kwargs) Overloaded function.   1. p0(self : rosetta.protocols.features.helixAssembly.HelicalFragment, p0 : rosetta.numeric.xyzVector_double_t) -> NoneType   2. p0(rosetta.protocols.features.helixAssembly.HelicalFragment) -> rosetta.numeric.xyzVector_double_t p1(...) from builtins.PyCapsule p1(*args, **kwargs) Overloaded function.   1. p1(self : rosetta.protocols.features.helixAssembly.HelicalFragment, p1 : rosetta.numeric.xyzVector_double_t) -> NoneType   2. p1(rosetta.protocols.features.helixAssembly.HelicalFragment) -> rosetta.numeric.xyzVector_double_t principal_component(...) from builtins.PyCapsule principal_component(*args, **kwargs) Overloaded function.   1. principal_component(self : rosetta.protocols.features.helixAssembly.HelicalFragment, principal_component : rosetta.numeric.xyzVector_double_t) -> NoneType   2. principal_component(rosetta.protocols.features.helixAssembly.HelicalFragment) -> rosetta.numeric.xyzVector_double_t reversed(...) from builtins.PyCapsule reversed(rosetta.protocols.features.helixAssembly.HelicalFragment) -> bool sasa(...) from builtins.PyCapsule sasa(*args, **kwargs) Overloaded function.   1. sasa(self : rosetta.protocols.features.helixAssembly.HelicalFragment, sasa : float) -> NoneType   2. sasa(rosetta.protocols.features.helixAssembly.HelicalFragment) -> float seq_end(...) from builtins.PyCapsule seq_end(rosetta.protocols.features.helixAssembly.HelicalFragment) -> int seq_start(...) from builtins.PyCapsule seq_start(rosetta.protocols.features.helixAssembly.HelicalFragment) -> int size(...) from builtins.PyCapsule size(rosetta.protocols.features.helixAssembly.HelicalFragment) -> int start(...) from builtins.PyCapsule start(rosetta.protocols.features.helixAssembly.HelicalFragment) -> int   class HelixBundleFeatures(rosetta.protocols.features.FeaturesReporter)       Method resolution order: HelixBundleFeatures rosetta.protocols.features.FeaturesReporter builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.features.helixAssembly.HelixBundleFeatures) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. features_reporter_dependencies(...) from builtins.PyCapsule features_reporter_dependencies(rosetta.protocols.features.helixAssembly.HelixBundleFeatures) -> rosetta.utility.vector1_std_string   return the set of features reporters that are required to also already be extracted by the time this one is used. report_features(...) from builtins.PyCapsule report_features(self : rosetta.protocols.features.helixAssembly.HelixBundleFeatures, pose : rosetta.core.pose.Pose, relevant_residues : rosetta.utility.vector1_bool, struct_id : int, db_session : rosetta.utility.sql_database.session) -> int   collect all the feature data for the pose type_name(...) from builtins.PyCapsule type_name(rosetta.protocols.features.helixAssembly.HelixBundleFeatures) -> str write_schema_to_db(...) from builtins.PyCapsule write_schema_to_db(self : rosetta.protocols.features.helixAssembly.HelixBundleFeatures, db_session : rosetta.utility.sql_database.session) -> NoneType   generate the table schemas and write them to the database Methods inherited from rosetta.protocols.features.FeaturesReporter: assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.features.FeaturesReporter,  : rosetta.protocols.features.FeaturesReporter) -> rosetta.protocols.features.FeaturesReporter check_relevant_residues(...) from builtins.PyCapsule check_relevant_residues(*args, **kwargs) Overloaded function.   1. check_relevant_residues(self : rosetta.protocols.features.FeaturesReporter, relevant_residues : rosetta.utility.vector1_bool, res1 : int) -> bool   2. check_relevant_residues(self : rosetta.protocols.features.FeaturesReporter, relevant_residues : rosetta.utility.vector1_bool, res1 : int, res2 : int) -> bool   3. check_relevant_residues(self : rosetta.protocols.features.FeaturesReporter, relevant_residues : rosetta.utility.vector1_bool, residues : rosetta.utility.vector1_unsigned_long) -> bool check_relevant_residues_range(...) from builtins.PyCapsule check_relevant_residues_range(self : rosetta.protocols.features.FeaturesReporter, relevant_residues : rosetta.utility.vector1_bool, res1 : int, res2 : int) -> bool delete_record(...) from builtins.PyCapsule delete_record(self : rosetta.protocols.features.FeaturesReporter,  : int,  : rosetta.utility.sql_database.session) -> NoneType get_relevant_residues_mode(...) from builtins.PyCapsule get_relevant_residues_mode(rosetta.protocols.features.FeaturesReporter) -> rosetta.protocols.features.RelevantResiduesMode.T load_into_pose(...) from builtins.PyCapsule load_into_pose(self : rosetta.protocols.features.FeaturesReporter,  : rosetta.utility.sql_database.session,  : int,  : rosetta.core.pose.Pose) -> NoneType schema(...) from builtins.PyCapsule schema(rosetta.protocols.features.FeaturesReporter) -> str   return sql statements that sets up the appropriate tables to contain the features. This should be removed once everything has been moved to the schema generator set_relevant_residues_mode(...) from builtins.PyCapsule set_relevant_residues_mode(self : rosetta.protocols.features.FeaturesReporter, setting : rosetta.protocols.features.RelevantResiduesMode.T) -> NoneType   class HelixBundleFeaturesCreator(rosetta.protocols.features.FeaturesReporterCreator)     creator for the HelixBundleFeatures class     Method resolution order: HelixBundleFeaturesCreator rosetta.protocols.features.FeaturesReporterCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.features.helixAssembly.HelixBundleFeaturesCreator,  : rosetta.protocols.features.helixAssembly.HelixBundleFeaturesCreator) -> rosetta.protocols.features.helixAssembly.HelixBundleFeaturesCreator create_features_reporter(...) from builtins.PyCapsule create_features_reporter(rosetta.protocols.features.helixAssembly.HelixBundleFeaturesCreator) -> rosetta.protocols.features.FeaturesReporter type_name(...) from builtins.PyCapsule type_name(rosetta.protocols.features.helixAssembly.HelixBundleFeaturesCreator) -> str