rosetta.protocols.farna.base_pairs
index
(built-in)

Bindings for protocols::farna::base_pairs namespace

 
Classes
       
builtins.object
BasePairStep
RNA_BasePairHandler

 
class BasePairStep(builtins.object)
    ////////////////////////////////
 
  Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(self : rosetta.protocols.farna.base_pairs.BasePairStep, i : int, i_next : int, j : int, j_next : int) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
__str__(...) from builtins.PyCapsule
__str__(rosetta.protocols.farna.base_pairs.BasePairStep) -> str
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.farna.base_pairs.BasePairStep,  : rosetta.protocols.farna.base_pairs.BasePairStep) -> rosetta.protocols.farna.base_pairs.BasePairStep
i(...) from builtins.PyCapsule
i(rosetta.protocols.farna.base_pairs.BasePairStep) -> int
i_next(...) from builtins.PyCapsule
i_next(rosetta.protocols.farna.base_pairs.BasePairStep) -> int
j(...) from builtins.PyCapsule
j(rosetta.protocols.farna.base_pairs.BasePairStep) -> int
j_next(...) from builtins.PyCapsule
j_next(rosetta.protocols.farna.base_pairs.BasePairStep) -> int

 
class RNA_BasePairHandler(builtins.object)
     Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(self : rosetta.protocols.farna.base_pairs.RNA_BasePairHandler, pose : rosetta.core.pose.Pose) -> NoneType
 
2. __init__(self : rosetta.protocols.farna.base_pairs.RNA_BasePairHandler, rna_params : rosetta.protocols.farna.setup.RNA_DeNovoParameters) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.farna.base_pairs.RNA_BasePairHandler,  : rosetta.protocols.farna.base_pairs.RNA_BasePairHandler) -> rosetta.protocols.farna.base_pairs.RNA_BasePairHandler
chain_connections(...) from builtins.PyCapsule
chain_connections(rosetta.protocols.farna.base_pairs.RNA_BasePairHandler) -> rosetta.utility.vector1_std_pair_utility_vector1_unsigned_long_std_allocator_unsigned_long_utility_vector1_unsigned_long_std_allocator_unsigned_long_t
check_base_pairs(...) from builtins.PyCapsule
check_base_pairs(self : rosetta.protocols.farna.base_pairs.RNA_BasePairHandler, pose : rosetta.core.pose.Pose, atom_level_domain_map : rosetta.protocols.toolbox.AtomLevelDomainMap) -> bool
connections(...) from builtins.PyCapsule
connections(rosetta.protocols.farna.base_pairs.RNA_BasePairHandler) -> rosetta.std.map_unsigned_long_unsigned_long
get_stem_residues(...) from builtins.PyCapsule
get_stem_residues(self : rosetta.protocols.farna.base_pairs.RNA_BasePairHandler, pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_unsigned_long
rna_pairing_list(...) from builtins.PyCapsule
rna_pairing_list(rosetta.protocols.farna.base_pairs.RNA_BasePairHandler) -> rosetta.utility.vector1_core_pose_rna_BasePair
setup_base_pair_constraints(...) from builtins.PyCapsule
setup_base_pair_constraints(*args, **kwargs)
Overloaded function.
 
1. setup_base_pair_constraints(self : rosetta.protocols.farna.base_pairs.RNA_BasePairHandler, pose : rosetta.core.pose.Pose, atom_level_domain_map : rosetta.protocols.toolbox.AtomLevelDomainMap) -> NoneType
 
2. setup_base_pair_constraints(self : rosetta.protocols.farna.base_pairs.RNA_BasePairHandler, pose : rosetta.core.pose.Pose, atom_level_domain_map : rosetta.protocols.toolbox.AtomLevelDomainMap, suppress_bp_constraint : float) -> NoneType