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- builtins.object
-
- BasePairStep
- RNA_BasePairHandler
class RNA_BasePairHandler(builtins.object) |
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Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(self : rosetta.protocols.farna.base_pairs.RNA_BasePairHandler, pose : rosetta.core.pose.Pose) -> NoneType
2. __init__(self : rosetta.protocols.farna.base_pairs.RNA_BasePairHandler, rna_params : rosetta.protocols.farna.setup.RNA_DeNovoParameters) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.farna.base_pairs.RNA_BasePairHandler, : rosetta.protocols.farna.base_pairs.RNA_BasePairHandler) -> rosetta.protocols.farna.base_pairs.RNA_BasePairHandler
- chain_connections(...) from builtins.PyCapsule
- chain_connections(rosetta.protocols.farna.base_pairs.RNA_BasePairHandler) -> rosetta.utility.vector1_std_pair_utility_vector1_unsigned_long_std_allocator_unsigned_long_utility_vector1_unsigned_long_std_allocator_unsigned_long_t
- check_base_pairs(...) from builtins.PyCapsule
- check_base_pairs(self : rosetta.protocols.farna.base_pairs.RNA_BasePairHandler, pose : rosetta.core.pose.Pose, atom_level_domain_map : rosetta.protocols.toolbox.AtomLevelDomainMap) -> bool
- connections(...) from builtins.PyCapsule
- connections(rosetta.protocols.farna.base_pairs.RNA_BasePairHandler) -> rosetta.std.map_unsigned_long_unsigned_long
- get_stem_residues(...) from builtins.PyCapsule
- get_stem_residues(self : rosetta.protocols.farna.base_pairs.RNA_BasePairHandler, pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_unsigned_long
- rna_pairing_list(...) from builtins.PyCapsule
- rna_pairing_list(rosetta.protocols.farna.base_pairs.RNA_BasePairHandler) -> rosetta.utility.vector1_core_pose_rna_BasePair
- setup_base_pair_constraints(...) from builtins.PyCapsule
- setup_base_pair_constraints(*args, **kwargs)
Overloaded function.
1. setup_base_pair_constraints(self : rosetta.protocols.farna.base_pairs.RNA_BasePairHandler, pose : rosetta.core.pose.Pose, atom_level_domain_map : rosetta.protocols.toolbox.AtomLevelDomainMap) -> NoneType
2. setup_base_pair_constraints(self : rosetta.protocols.farna.base_pairs.RNA_BasePairHandler, pose : rosetta.core.pose.Pose, atom_level_domain_map : rosetta.protocols.toolbox.AtomLevelDomainMap, suppress_bp_constraint : float) -> NoneType
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