rosetta.protocols.denovo_design.movers
index
(built-in)

Bindings for protocols::denovo_design::movers namespace

 
Classes
       
builtins.object
CutAndJump
RelaxScriptCommand
RotationRange
rosetta.protocols.moves.Mover(builtins.object)
AddSegmentDataMover
AlignResiduesMover
BridgeChainsMover
BuildDeNovoBackboneMover
ExtendChainMover
FoldTreeFromFoldGraphMover
RotateSegmentMover
SealFoldTreeMover
SetResidueAliasMover
rosetta.protocols.moves.MoverCreator(builtins.object)
AddSegmentDataMoverCreator
AlignResiduesMoverCreator
BridgeChainsMoverCreator
BuildDeNovoBackboneMoverCreator
ExtendChainMoverCreator
FastDesignCreator
FoldTreeFromFoldGraphMoverCreator
RotateSegmentMoverCreator
SealFoldTreeMoverCreator
SetResidueAliasMoverCreator
rosetta.protocols.relax.FastRelax(rosetta.protocols.relax.RelaxProtocolBase)
FastDesign
rosetta.utility.excn.EXCN_Base(builtins.object)
EXCN_NothingToFold

 
class AddSegmentDataMover(rosetta.protocols.moves.Mover)
    Adds a segment to the structuredata
 
 
Method resolution order:
AddSegmentDataMover
rosetta.protocols.moves.Mover
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(handle) -> NoneType
 
2. __init__(handle, rosetta.protocols.denovo_design.movers.AddSegmentDataMover) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
__str__(...) from builtins.PyCapsule
__str__(rosetta.protocols.denovo_design.movers.AddSegmentDataMover) -> str
apply(...) from builtins.PyCapsule
apply(self : rosetta.protocols.denovo_design.movers.AddSegmentDataMover, pose : rosetta.core.pose.Pose) -> NoneType
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.denovo_design.movers.AddSegmentDataMover,  : rosetta.protocols.denovo_design.movers.AddSegmentDataMover) -> rosetta.protocols.denovo_design.movers.AddSegmentDataMover
class_name(...) from builtins.PyCapsule
class_name() -> str
clone(...) from builtins.PyCapsule
clone(rosetta.protocols.denovo_design.movers.AddSegmentDataMover) -> rosetta.protocols.moves.Mover
 
required in the context of the parser/scripting scheme
fresh_instance(...) from builtins.PyCapsule
fresh_instance(rosetta.protocols.denovo_design.movers.AddSegmentDataMover) -> rosetta.protocols.moves.Mover
 
required in the context of the parser/scripting scheme
get_name(...) from builtins.PyCapsule
get_name(rosetta.protocols.denovo_design.movers.AddSegmentDataMover) -> str

Methods inherited from rosetta.protocols.moves.Mover:
clear_info(...) from builtins.PyCapsule
clear_info(rosetta.protocols.moves.Mover) -> NoneType
 
Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.
 
 
 clear_info is called by jd2 before calling apply
create(...) from builtins.PyCapsule
create(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
get_additional_output(...) from builtins.PyCapsule
get_additional_output(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
 
fpd
 
 
 Mechanism by which a mover may return multiple output poses from a single input pose.
get_current_job(...) from builtins.PyCapsule
get_current_job(rosetta.protocols.moves.Mover) -> protocols::jobdist::BasicJob
get_current_tag(...) from builtins.PyCapsule
get_current_tag(rosetta.protocols.moves.Mover) -> str
 
A tag is a unique identifier used to identify structures produced
 by this Moverget_current_tag() returns the tag, and set_current_tag( std::string tag )
 sets the tag.  This functionality is not intended for use with the 2008 job distributor.
get_input_pose(...) from builtins.PyCapsule
get_input_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
get_last_move_status(...) from builtins.PyCapsule
get_last_move_status(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.MoverStatus
 
returns status after an apply().  The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say "that run was no good, skip it" then use the protected last_move_status(MoverStatus) to change the value that this function will return.
get_native_pose(...) from builtins.PyCapsule
get_native_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
get_self_ptr(...) from builtins.PyCapsule
get_self_ptr(*args, **kwargs)
Overloaded function.
 
1. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
 
2. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
get_self_weak_ptr(...) from builtins.PyCapsule
get_self_weak_ptr(*args, **kwargs)
Overloaded function.
 
1. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_const_protocols_moves_Mover_t
 
2. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_protocols_moves_Mover_t
get_type(...) from builtins.PyCapsule
get_type(rosetta.protocols.moves.Mover) -> str
info(...) from builtins.PyCapsule
info(*args, **kwargs)
Overloaded function.
 
1. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t
 
non-const accessor
 
2. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t
 
const accessor
last_proposal_density_ratio(...) from builtins.PyCapsule
last_proposal_density_ratio(rosetta.protocols.moves.Mover) -> float
name(...) from builtins.PyCapsule
name() -> str
register_options(...) from builtins.PyCapsule
register_options(*args, **kwargs)
Overloaded function.
 
1. register_options() -> NoneType
 
Overload this static method if you access options within the mover.
 
 
 These options will end up in -help of your application if users of this mover call register_options.
 Do this recursively!
 If you use movers within your mover, call their register_options in your register_options() method.
 
2. register_options() -> NoneType
 
3. register_options() -> NoneType
 
4. register_options() -> NoneType
 
5. register_options() -> NoneType
 
6. register_options() -> NoneType
 
7. register_options() -> NoneType
 
8. register_options() -> NoneType
 
9. register_options() -> NoneType
 
Associates relevant options with the AntibodyModeler class
 
10. register_options() -> NoneType
 
Associates relevant options with the AntibodyModeler class
 
11. register_options() -> NoneType
 
Associates relevant options with the SnugDock class
 
12. register_options() -> NoneType
 
Associates relevant options with the SnugDockProtocol class
 
13. register_options() -> NoneType
 
Register the options used by this mover with the global options
 system.
 
14. register_options() -> NoneType
 
15. register_options() -> NoneType
 
Associate relevant options with the TemperedDocking class.
 
16. register_options() -> NoneType
 
17. register_options() -> NoneType
 
18. register_options() -> NoneType
 
Associates relevant options with the TemperedDocking class.
 
19. register_options() -> NoneType
 
20. register_options() -> NoneType
 
Associates relevant options with the ConstraintSetMover class
 
21. register_options() -> NoneType
 
22. register_options() -> NoneType
 
Associates relevant options with the DockingInitialPerturbation class
 
23. register_options() -> NoneType
 
Associates relevant options with the DockingProtocol class
 
24. register_options() -> NoneType
 
Associates relevant options with the TemperedDocking class
 
25. register_options() -> NoneType
 
26. register_options() -> NoneType
 
27. register_options() -> NoneType
 
28. register_options() -> NoneType
 
register options
 
29. register_options() -> NoneType
 
30. register_options() -> NoneType
 
Registers applicable options
 
31. register_options() -> NoneType
 
Register options with the option system.
 
32. register_options() -> NoneType
 
33. register_options() -> NoneType
 
34. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
35. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycleContainer class
 
36. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
37. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
38. register_options() -> NoneType
 
39. register_options() -> NoneType
 
Register options with the option system.
 
40. register_options() -> NoneType
reinitialize_for_each_job(...) from builtins.PyCapsule
reinitialize_for_each_job(rosetta.protocols.moves.Mover) -> bool
 
Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on
 each use.
reinitialize_for_new_input(...) from builtins.PyCapsule
reinitialize_for_new_input(rosetta.protocols.moves.Mover) -> bool
 
Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input
 pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for
 that one input pose).
reset_status(...) from builtins.PyCapsule
reset_status(rosetta.protocols.moves.Mover) -> NoneType
 
resets status to SUCCESS, meant to be used before an apply().  The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.
set_current_job(...) from builtins.PyCapsule
set_current_job(self : rosetta.protocols.moves.Mover, job : protocols::jobdist::BasicJob) -> NoneType
 
////////////////////////////end Job Distributor interface////////////////////////////////////////
set_current_tag(...) from builtins.PyCapsule
set_current_tag(self : rosetta.protocols.moves.Mover, new_tag : str) -> NoneType
set_input_pose(...) from builtins.PyCapsule
set_input_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
setter for poses contained for rms
set_native_pose(...) from builtins.PyCapsule
set_native_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
setter for native poses contained for rms ---- we should get rid of this method? it is widely used, but a bit unsafe
set_type(...) from builtins.PyCapsule
set_type(self : rosetta.protocols.moves.Mover, setting : str) -> NoneType
test_move(...) from builtins.PyCapsule
test_move(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
: Unit test support function.  Apply one move to a given pose.
      Allows extra test specific functions to be called before applying
type(...) from builtins.PyCapsule
type(*args, **kwargs)
Overloaded function.
 
1. type(rosetta.protocols.moves.Mover) -> str
 
2. type(self : rosetta.protocols.moves.Mover, type_in : str) -> NoneType

 
class AddSegmentDataMoverCreator(rosetta.protocols.moves.MoverCreator)
    
Method resolution order:
AddSegmentDataMoverCreator
rosetta.protocols.moves.MoverCreator
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(handle) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.denovo_design.movers.AddSegmentDataMoverCreator,  : rosetta.protocols.denovo_design.movers.AddSegmentDataMoverCreator) -> rosetta.protocols.denovo_design.movers.AddSegmentDataMoverCreator
create_mover(...) from builtins.PyCapsule
create_mover(rosetta.protocols.denovo_design.movers.AddSegmentDataMoverCreator) -> rosetta.protocols.moves.Mover
keyname(...) from builtins.PyCapsule
keyname(rosetta.protocols.denovo_design.movers.AddSegmentDataMoverCreator) -> str

 
class AlignResiduesMover(rosetta.protocols.moves.Mover)
    Aligns one residue onto another
 
 
Method resolution order:
AlignResiduesMover
rosetta.protocols.moves.Mover
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(handle) -> NoneType
 
2. __init__(handle, rosetta.protocols.denovo_design.movers.AlignResiduesMover) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
__str__(...) from builtins.PyCapsule
__str__(rosetta.protocols.denovo_design.movers.AlignResiduesMover) -> str
add_target_selector(...) from builtins.PyCapsule
add_target_selector(self : rosetta.protocols.denovo_design.movers.AlignResiduesMover, selector : rosetta.core.select.residue_selector.ResidueSelector) -> NoneType
add_template_selector(...) from builtins.PyCapsule
add_template_selector(self : rosetta.protocols.denovo_design.movers.AlignResiduesMover, selector : rosetta.core.select.residue_selector.ResidueSelector) -> NoneType
apply(...) from builtins.PyCapsule
apply(self : rosetta.protocols.denovo_design.movers.AlignResiduesMover, pose : rosetta.core.pose.Pose) -> NoneType
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.denovo_design.movers.AlignResiduesMover,  : rosetta.protocols.denovo_design.movers.AlignResiduesMover) -> rosetta.protocols.denovo_design.movers.AlignResiduesMover
class_name(...) from builtins.PyCapsule
class_name() -> str
clone(...) from builtins.PyCapsule
clone(rosetta.protocols.denovo_design.movers.AlignResiduesMover) -> rosetta.protocols.moves.Mover
 
required in the context of the parser/scripting scheme
fresh_instance(...) from builtins.PyCapsule
fresh_instance(rosetta.protocols.denovo_design.movers.AlignResiduesMover) -> rosetta.protocols.moves.Mover
 
required in the context of the parser/scripting scheme
get_name(...) from builtins.PyCapsule
get_name(rosetta.protocols.denovo_design.movers.AlignResiduesMover) -> str
set_id(...) from builtins.PyCapsule
set_id(self : rosetta.protocols.denovo_design.movers.AlignResiduesMover, id : str) -> NoneType

Methods inherited from rosetta.protocols.moves.Mover:
clear_info(...) from builtins.PyCapsule
clear_info(rosetta.protocols.moves.Mover) -> NoneType
 
Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.
 
 
 clear_info is called by jd2 before calling apply
create(...) from builtins.PyCapsule
create(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
get_additional_output(...) from builtins.PyCapsule
get_additional_output(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
 
fpd
 
 
 Mechanism by which a mover may return multiple output poses from a single input pose.
get_current_job(...) from builtins.PyCapsule
get_current_job(rosetta.protocols.moves.Mover) -> protocols::jobdist::BasicJob
get_current_tag(...) from builtins.PyCapsule
get_current_tag(rosetta.protocols.moves.Mover) -> str
 
A tag is a unique identifier used to identify structures produced
 by this Moverget_current_tag() returns the tag, and set_current_tag( std::string tag )
 sets the tag.  This functionality is not intended for use with the 2008 job distributor.
get_input_pose(...) from builtins.PyCapsule
get_input_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
get_last_move_status(...) from builtins.PyCapsule
get_last_move_status(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.MoverStatus
 
returns status after an apply().  The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say "that run was no good, skip it" then use the protected last_move_status(MoverStatus) to change the value that this function will return.
get_native_pose(...) from builtins.PyCapsule
get_native_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
get_self_ptr(...) from builtins.PyCapsule
get_self_ptr(*args, **kwargs)
Overloaded function.
 
1. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
 
2. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
get_self_weak_ptr(...) from builtins.PyCapsule
get_self_weak_ptr(*args, **kwargs)
Overloaded function.
 
1. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_const_protocols_moves_Mover_t
 
2. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_protocols_moves_Mover_t
get_type(...) from builtins.PyCapsule
get_type(rosetta.protocols.moves.Mover) -> str
info(...) from builtins.PyCapsule
info(*args, **kwargs)
Overloaded function.
 
1. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t
 
non-const accessor
 
2. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t
 
const accessor
last_proposal_density_ratio(...) from builtins.PyCapsule
last_proposal_density_ratio(rosetta.protocols.moves.Mover) -> float
name(...) from builtins.PyCapsule
name() -> str
register_options(...) from builtins.PyCapsule
register_options(*args, **kwargs)
Overloaded function.
 
1. register_options() -> NoneType
 
Overload this static method if you access options within the mover.
 
 
 These options will end up in -help of your application if users of this mover call register_options.
 Do this recursively!
 If you use movers within your mover, call their register_options in your register_options() method.
 
2. register_options() -> NoneType
 
3. register_options() -> NoneType
 
4. register_options() -> NoneType
 
5. register_options() -> NoneType
 
6. register_options() -> NoneType
 
7. register_options() -> NoneType
 
8. register_options() -> NoneType
 
9. register_options() -> NoneType
 
Associates relevant options with the AntibodyModeler class
 
10. register_options() -> NoneType
 
Associates relevant options with the AntibodyModeler class
 
11. register_options() -> NoneType
 
Associates relevant options with the SnugDock class
 
12. register_options() -> NoneType
 
Associates relevant options with the SnugDockProtocol class
 
13. register_options() -> NoneType
 
Register the options used by this mover with the global options
 system.
 
14. register_options() -> NoneType
 
15. register_options() -> NoneType
 
Associate relevant options with the TemperedDocking class.
 
16. register_options() -> NoneType
 
17. register_options() -> NoneType
 
18. register_options() -> NoneType
 
Associates relevant options with the TemperedDocking class.
 
19. register_options() -> NoneType
 
20. register_options() -> NoneType
 
Associates relevant options with the ConstraintSetMover class
 
21. register_options() -> NoneType
 
22. register_options() -> NoneType
 
Associates relevant options with the DockingInitialPerturbation class
 
23. register_options() -> NoneType
 
Associates relevant options with the DockingProtocol class
 
24. register_options() -> NoneType
 
Associates relevant options with the TemperedDocking class
 
25. register_options() -> NoneType
 
26. register_options() -> NoneType
 
27. register_options() -> NoneType
 
28. register_options() -> NoneType
 
register options
 
29. register_options() -> NoneType
 
30. register_options() -> NoneType
 
Registers applicable options
 
31. register_options() -> NoneType
 
Register options with the option system.
 
32. register_options() -> NoneType
 
33. register_options() -> NoneType
 
34. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
35. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycleContainer class
 
36. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
37. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
38. register_options() -> NoneType
 
39. register_options() -> NoneType
 
Register options with the option system.
 
40. register_options() -> NoneType
reinitialize_for_each_job(...) from builtins.PyCapsule
reinitialize_for_each_job(rosetta.protocols.moves.Mover) -> bool
 
Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on
 each use.
reinitialize_for_new_input(...) from builtins.PyCapsule
reinitialize_for_new_input(rosetta.protocols.moves.Mover) -> bool
 
Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input
 pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for
 that one input pose).
reset_status(...) from builtins.PyCapsule
reset_status(rosetta.protocols.moves.Mover) -> NoneType
 
resets status to SUCCESS, meant to be used before an apply().  The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.
set_current_job(...) from builtins.PyCapsule
set_current_job(self : rosetta.protocols.moves.Mover, job : protocols::jobdist::BasicJob) -> NoneType
 
////////////////////////////end Job Distributor interface////////////////////////////////////////
set_current_tag(...) from builtins.PyCapsule
set_current_tag(self : rosetta.protocols.moves.Mover, new_tag : str) -> NoneType
set_input_pose(...) from builtins.PyCapsule
set_input_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
setter for poses contained for rms
set_native_pose(...) from builtins.PyCapsule
set_native_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
setter for native poses contained for rms ---- we should get rid of this method? it is widely used, but a bit unsafe
set_type(...) from builtins.PyCapsule
set_type(self : rosetta.protocols.moves.Mover, setting : str) -> NoneType
test_move(...) from builtins.PyCapsule
test_move(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
: Unit test support function.  Apply one move to a given pose.
      Allows extra test specific functions to be called before applying
type(...) from builtins.PyCapsule
type(*args, **kwargs)
Overloaded function.
 
1. type(rosetta.protocols.moves.Mover) -> str
 
2. type(self : rosetta.protocols.moves.Mover, type_in : str) -> NoneType

 
class AlignResiduesMoverCreator(rosetta.protocols.moves.MoverCreator)
    
Method resolution order:
AlignResiduesMoverCreator
rosetta.protocols.moves.MoverCreator
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(handle) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.denovo_design.movers.AlignResiduesMoverCreator,  : rosetta.protocols.denovo_design.movers.AlignResiduesMoverCreator) -> rosetta.protocols.denovo_design.movers.AlignResiduesMoverCreator
create_mover(...) from builtins.PyCapsule
create_mover(rosetta.protocols.denovo_design.movers.AlignResiduesMoverCreator) -> rosetta.protocols.moves.Mover
keyname(...) from builtins.PyCapsule
keyname(rosetta.protocols.denovo_design.movers.AlignResiduesMoverCreator) -> str

 
class BridgeChainsMover(rosetta.protocols.moves.Mover)
    Creates a bridge connection between two chains using remodel
 
 
Method resolution order:
BridgeChainsMover
rosetta.protocols.moves.Mover
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(handle) -> NoneType
 
2. __init__(self : handle, class_name : str) -> NoneType
 
3. __init__(handle, rosetta.protocols.denovo_design.movers.BridgeChainsMover) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
__str__(...) from builtins.PyCapsule
__str__(rosetta.protocols.denovo_design.movers.BridgeChainsMover) -> str
apply(...) from builtins.PyCapsule
apply(self : rosetta.protocols.denovo_design.movers.BridgeChainsMover, pose : rosetta.core.pose.Pose) -> NoneType
architect(...) from builtins.PyCapsule
architect(rosetta.protocols.denovo_design.movers.BridgeChainsMover) -> rosetta.protocols.denovo_design.connection.ConnectionArchitect
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.denovo_design.movers.BridgeChainsMover,  : rosetta.protocols.denovo_design.movers.BridgeChainsMover) -> rosetta.protocols.denovo_design.movers.BridgeChainsMover
class_name(...) from builtins.PyCapsule
class_name() -> str
clone(...) from builtins.PyCapsule
clone(rosetta.protocols.denovo_design.movers.BridgeChainsMover) -> rosetta.protocols.moves.Mover
 
required in the context of the parser/scripting scheme
dry_run(...) from builtins.PyCapsule
dry_run(rosetta.protocols.denovo_design.movers.BridgeChainsMover) -> bool
fresh_instance(...) from builtins.PyCapsule
fresh_instance(rosetta.protocols.denovo_design.movers.BridgeChainsMover) -> rosetta.protocols.moves.Mover
 
required in the context of the parser/scripting scheme
get_name(...) from builtins.PyCapsule
get_name(rosetta.protocols.denovo_design.movers.BridgeChainsMover) -> str
overlap(...) from builtins.PyCapsule
overlap(rosetta.protocols.denovo_design.movers.BridgeChainsMover) -> int
scorefxn(...) from builtins.PyCapsule
scorefxn(rosetta.protocols.denovo_design.movers.BridgeChainsMover) -> rosetta.core.scoring.ScoreFunction
set_dry_run(...) from builtins.PyCapsule
set_dry_run(self : rosetta.protocols.denovo_design.movers.BridgeChainsMover, dry_run : bool) -> NoneType
set_id(...) from builtins.PyCapsule
set_id(self : rosetta.protocols.denovo_design.movers.BridgeChainsMover, my_id : str) -> NoneType
set_motifs(...) from builtins.PyCapsule
set_motifs(self : rosetta.protocols.denovo_design.movers.BridgeChainsMover, motifs_str : str, cut_resis_str : str) -> NoneType
set_overlap(...) from builtins.PyCapsule
set_overlap(self : rosetta.protocols.denovo_design.movers.BridgeChainsMover, overlap_val : int) -> NoneType
set_scorefxn(...) from builtins.PyCapsule
set_scorefxn(self : rosetta.protocols.denovo_design.movers.BridgeChainsMover, sfxn : rosetta.core.scoring.ScoreFunction) -> NoneType
set_segment1_ids(...) from builtins.PyCapsule
set_segment1_ids(self : rosetta.protocols.denovo_design.movers.BridgeChainsMover, segments : str) -> NoneType
set_segment2_ids(...) from builtins.PyCapsule
set_segment2_ids(self : rosetta.protocols.denovo_design.movers.BridgeChainsMover, segments : str) -> NoneType

Methods inherited from rosetta.protocols.moves.Mover:
clear_info(...) from builtins.PyCapsule
clear_info(rosetta.protocols.moves.Mover) -> NoneType
 
Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.
 
 
 clear_info is called by jd2 before calling apply
create(...) from builtins.PyCapsule
create(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
get_additional_output(...) from builtins.PyCapsule
get_additional_output(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
 
fpd
 
 
 Mechanism by which a mover may return multiple output poses from a single input pose.
get_current_job(...) from builtins.PyCapsule
get_current_job(rosetta.protocols.moves.Mover) -> protocols::jobdist::BasicJob
get_current_tag(...) from builtins.PyCapsule
get_current_tag(rosetta.protocols.moves.Mover) -> str
 
A tag is a unique identifier used to identify structures produced
 by this Moverget_current_tag() returns the tag, and set_current_tag( std::string tag )
 sets the tag.  This functionality is not intended for use with the 2008 job distributor.
get_input_pose(...) from builtins.PyCapsule
get_input_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
get_last_move_status(...) from builtins.PyCapsule
get_last_move_status(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.MoverStatus
 
returns status after an apply().  The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say "that run was no good, skip it" then use the protected last_move_status(MoverStatus) to change the value that this function will return.
get_native_pose(...) from builtins.PyCapsule
get_native_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
get_self_ptr(...) from builtins.PyCapsule
get_self_ptr(*args, **kwargs)
Overloaded function.
 
1. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
 
2. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
get_self_weak_ptr(...) from builtins.PyCapsule
get_self_weak_ptr(*args, **kwargs)
Overloaded function.
 
1. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_const_protocols_moves_Mover_t
 
2. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_protocols_moves_Mover_t
get_type(...) from builtins.PyCapsule
get_type(rosetta.protocols.moves.Mover) -> str
info(...) from builtins.PyCapsule
info(*args, **kwargs)
Overloaded function.
 
1. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t
 
non-const accessor
 
2. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t
 
const accessor
last_proposal_density_ratio(...) from builtins.PyCapsule
last_proposal_density_ratio(rosetta.protocols.moves.Mover) -> float
name(...) from builtins.PyCapsule
name() -> str
register_options(...) from builtins.PyCapsule
register_options(*args, **kwargs)
Overloaded function.
 
1. register_options() -> NoneType
 
Overload this static method if you access options within the mover.
 
 
 These options will end up in -help of your application if users of this mover call register_options.
 Do this recursively!
 If you use movers within your mover, call their register_options in your register_options() method.
 
2. register_options() -> NoneType
 
3. register_options() -> NoneType
 
4. register_options() -> NoneType
 
5. register_options() -> NoneType
 
6. register_options() -> NoneType
 
7. register_options() -> NoneType
 
8. register_options() -> NoneType
 
9. register_options() -> NoneType
 
Associates relevant options with the AntibodyModeler class
 
10. register_options() -> NoneType
 
Associates relevant options with the AntibodyModeler class
 
11. register_options() -> NoneType
 
Associates relevant options with the SnugDock class
 
12. register_options() -> NoneType
 
Associates relevant options with the SnugDockProtocol class
 
13. register_options() -> NoneType
 
Register the options used by this mover with the global options
 system.
 
14. register_options() -> NoneType
 
15. register_options() -> NoneType
 
Associate relevant options with the TemperedDocking class.
 
16. register_options() -> NoneType
 
17. register_options() -> NoneType
 
18. register_options() -> NoneType
 
Associates relevant options with the TemperedDocking class.
 
19. register_options() -> NoneType
 
20. register_options() -> NoneType
 
Associates relevant options with the ConstraintSetMover class
 
21. register_options() -> NoneType
 
22. register_options() -> NoneType
 
Associates relevant options with the DockingInitialPerturbation class
 
23. register_options() -> NoneType
 
Associates relevant options with the DockingProtocol class
 
24. register_options() -> NoneType
 
Associates relevant options with the TemperedDocking class
 
25. register_options() -> NoneType
 
26. register_options() -> NoneType
 
27. register_options() -> NoneType
 
28. register_options() -> NoneType
 
register options
 
29. register_options() -> NoneType
 
30. register_options() -> NoneType
 
Registers applicable options
 
31. register_options() -> NoneType
 
Register options with the option system.
 
32. register_options() -> NoneType
 
33. register_options() -> NoneType
 
34. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
35. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycleContainer class
 
36. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
37. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
38. register_options() -> NoneType
 
39. register_options() -> NoneType
 
Register options with the option system.
 
40. register_options() -> NoneType
reinitialize_for_each_job(...) from builtins.PyCapsule
reinitialize_for_each_job(rosetta.protocols.moves.Mover) -> bool
 
Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on
 each use.
reinitialize_for_new_input(...) from builtins.PyCapsule
reinitialize_for_new_input(rosetta.protocols.moves.Mover) -> bool
 
Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input
 pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for
 that one input pose).
reset_status(...) from builtins.PyCapsule
reset_status(rosetta.protocols.moves.Mover) -> NoneType
 
resets status to SUCCESS, meant to be used before an apply().  The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.
set_current_job(...) from builtins.PyCapsule
set_current_job(self : rosetta.protocols.moves.Mover, job : protocols::jobdist::BasicJob) -> NoneType
 
////////////////////////////end Job Distributor interface////////////////////////////////////////
set_current_tag(...) from builtins.PyCapsule
set_current_tag(self : rosetta.protocols.moves.Mover, new_tag : str) -> NoneType
set_input_pose(...) from builtins.PyCapsule
set_input_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
setter for poses contained for rms
set_native_pose(...) from builtins.PyCapsule
set_native_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
setter for native poses contained for rms ---- we should get rid of this method? it is widely used, but a bit unsafe
set_type(...) from builtins.PyCapsule
set_type(self : rosetta.protocols.moves.Mover, setting : str) -> NoneType
test_move(...) from builtins.PyCapsule
test_move(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
: Unit test support function.  Apply one move to a given pose.
      Allows extra test specific functions to be called before applying
type(...) from builtins.PyCapsule
type(*args, **kwargs)
Overloaded function.
 
1. type(rosetta.protocols.moves.Mover) -> str
 
2. type(self : rosetta.protocols.moves.Mover, type_in : str) -> NoneType

 
class BridgeChainsMoverCreator(rosetta.protocols.moves.MoverCreator)
    
Method resolution order:
BridgeChainsMoverCreator
rosetta.protocols.moves.MoverCreator
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(handle) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.denovo_design.movers.BridgeChainsMoverCreator,  : rosetta.protocols.denovo_design.movers.BridgeChainsMoverCreator) -> rosetta.protocols.denovo_design.movers.BridgeChainsMoverCreator
create_mover(...) from builtins.PyCapsule
create_mover(rosetta.protocols.denovo_design.movers.BridgeChainsMoverCreator) -> rosetta.protocols.moves.Mover
keyname(...) from builtins.PyCapsule
keyname(rosetta.protocols.denovo_design.movers.BridgeChainsMoverCreator) -> str

 
class BuildDeNovoBackboneMover(rosetta.protocols.moves.Mover)
    Mover that builds and folds a structure via fragment insertion
 
 
Method resolution order:
BuildDeNovoBackboneMover
rosetta.protocols.moves.Mover
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(handle) -> NoneType
 
2. __init__(handle, rosetta.protocols.denovo_design.movers.BuildDeNovoBackboneMover) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
apply(...) from builtins.PyCapsule
apply(self : rosetta.protocols.denovo_design.movers.BuildDeNovoBackboneMover, pose : rosetta.core.pose.Pose) -> NoneType
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.denovo_design.movers.BuildDeNovoBackboneMover,  : rosetta.protocols.denovo_design.movers.BuildDeNovoBackboneMover) -> rosetta.protocols.denovo_design.movers.BuildDeNovoBackboneMover
class_name(...) from builtins.PyCapsule
class_name() -> str
clone(...) from builtins.PyCapsule
clone(rosetta.protocols.denovo_design.movers.BuildDeNovoBackboneMover) -> rosetta.protocols.moves.Mover
 
required in the context of the parser/scripting scheme
fresh_instance(...) from builtins.PyCapsule
fresh_instance(rosetta.protocols.denovo_design.movers.BuildDeNovoBackboneMover) -> rosetta.protocols.moves.Mover
 
required in the context of the parser/scripting scheme
get_name(...) from builtins.PyCapsule
get_name(rosetta.protocols.denovo_design.movers.BuildDeNovoBackboneMover) -> str
id(...) from builtins.PyCapsule
id(rosetta.protocols.denovo_design.movers.BuildDeNovoBackboneMover) -> str
set_architect(...) from builtins.PyCapsule
set_architect(self : rosetta.protocols.denovo_design.movers.BuildDeNovoBackboneMover, architect : rosetta.protocols.denovo_design.architects.DeNovoArchitect) -> NoneType
set_connection_overlap(...) from builtins.PyCapsule
set_connection_overlap(self : rosetta.protocols.denovo_design.movers.BuildDeNovoBackboneMover, overlap_val : int) -> NoneType
set_folder(...) from builtins.PyCapsule
set_folder(self : rosetta.protocols.denovo_design.movers.BuildDeNovoBackboneMover, folder : rosetta.protocols.denovo_design.components.PoseFolder) -> NoneType
set_id(...) from builtins.PyCapsule
set_id(self : rosetta.protocols.denovo_design.movers.BuildDeNovoBackboneMover, id_value : str) -> NoneType
set_score_filter(...) from builtins.PyCapsule
set_score_filter(self : rosetta.protocols.denovo_design.movers.BuildDeNovoBackboneMover, filter : rosetta.protocols.filters.Filter) -> NoneType

Methods inherited from rosetta.protocols.moves.Mover:
clear_info(...) from builtins.PyCapsule
clear_info(rosetta.protocols.moves.Mover) -> NoneType
 
Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.
 
 
 clear_info is called by jd2 before calling apply
create(...) from builtins.PyCapsule
create(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
get_additional_output(...) from builtins.PyCapsule
get_additional_output(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
 
fpd
 
 
 Mechanism by which a mover may return multiple output poses from a single input pose.
get_current_job(...) from builtins.PyCapsule
get_current_job(rosetta.protocols.moves.Mover) -> protocols::jobdist::BasicJob
get_current_tag(...) from builtins.PyCapsule
get_current_tag(rosetta.protocols.moves.Mover) -> str
 
A tag is a unique identifier used to identify structures produced
 by this Moverget_current_tag() returns the tag, and set_current_tag( std::string tag )
 sets the tag.  This functionality is not intended for use with the 2008 job distributor.
get_input_pose(...) from builtins.PyCapsule
get_input_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
get_last_move_status(...) from builtins.PyCapsule
get_last_move_status(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.MoverStatus
 
returns status after an apply().  The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say "that run was no good, skip it" then use the protected last_move_status(MoverStatus) to change the value that this function will return.
get_native_pose(...) from builtins.PyCapsule
get_native_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
get_self_ptr(...) from builtins.PyCapsule
get_self_ptr(*args, **kwargs)
Overloaded function.
 
1. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
 
2. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
get_self_weak_ptr(...) from builtins.PyCapsule
get_self_weak_ptr(*args, **kwargs)
Overloaded function.
 
1. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_const_protocols_moves_Mover_t
 
2. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_protocols_moves_Mover_t
get_type(...) from builtins.PyCapsule
get_type(rosetta.protocols.moves.Mover) -> str
info(...) from builtins.PyCapsule
info(*args, **kwargs)
Overloaded function.
 
1. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t
 
non-const accessor
 
2. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t
 
const accessor
last_proposal_density_ratio(...) from builtins.PyCapsule
last_proposal_density_ratio(rosetta.protocols.moves.Mover) -> float
name(...) from builtins.PyCapsule
name() -> str
register_options(...) from builtins.PyCapsule
register_options(*args, **kwargs)
Overloaded function.
 
1. register_options() -> NoneType
 
Overload this static method if you access options within the mover.
 
 
 These options will end up in -help of your application if users of this mover call register_options.
 Do this recursively!
 If you use movers within your mover, call their register_options in your register_options() method.
 
2. register_options() -> NoneType
 
3. register_options() -> NoneType
 
4. register_options() -> NoneType
 
5. register_options() -> NoneType
 
6. register_options() -> NoneType
 
7. register_options() -> NoneType
 
8. register_options() -> NoneType
 
9. register_options() -> NoneType
 
Associates relevant options with the AntibodyModeler class
 
10. register_options() -> NoneType
 
Associates relevant options with the AntibodyModeler class
 
11. register_options() -> NoneType
 
Associates relevant options with the SnugDock class
 
12. register_options() -> NoneType
 
Associates relevant options with the SnugDockProtocol class
 
13. register_options() -> NoneType
 
Register the options used by this mover with the global options
 system.
 
14. register_options() -> NoneType
 
15. register_options() -> NoneType
 
Associate relevant options with the TemperedDocking class.
 
16. register_options() -> NoneType
 
17. register_options() -> NoneType
 
18. register_options() -> NoneType
 
Associates relevant options with the TemperedDocking class.
 
19. register_options() -> NoneType
 
20. register_options() -> NoneType
 
Associates relevant options with the ConstraintSetMover class
 
21. register_options() -> NoneType
 
22. register_options() -> NoneType
 
Associates relevant options with the DockingInitialPerturbation class
 
23. register_options() -> NoneType
 
Associates relevant options with the DockingProtocol class
 
24. register_options() -> NoneType
 
Associates relevant options with the TemperedDocking class
 
25. register_options() -> NoneType
 
26. register_options() -> NoneType
 
27. register_options() -> NoneType
 
28. register_options() -> NoneType
 
register options
 
29. register_options() -> NoneType
 
30. register_options() -> NoneType
 
Registers applicable options
 
31. register_options() -> NoneType
 
Register options with the option system.
 
32. register_options() -> NoneType
 
33. register_options() -> NoneType
 
34. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
35. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycleContainer class
 
36. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
37. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
38. register_options() -> NoneType
 
39. register_options() -> NoneType
 
Register options with the option system.
 
40. register_options() -> NoneType
reinitialize_for_each_job(...) from builtins.PyCapsule
reinitialize_for_each_job(rosetta.protocols.moves.Mover) -> bool
 
Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on
 each use.
reinitialize_for_new_input(...) from builtins.PyCapsule
reinitialize_for_new_input(rosetta.protocols.moves.Mover) -> bool
 
Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input
 pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for
 that one input pose).
reset_status(...) from builtins.PyCapsule
reset_status(rosetta.protocols.moves.Mover) -> NoneType
 
resets status to SUCCESS, meant to be used before an apply().  The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.
set_current_job(...) from builtins.PyCapsule
set_current_job(self : rosetta.protocols.moves.Mover, job : protocols::jobdist::BasicJob) -> NoneType
 
////////////////////////////end Job Distributor interface////////////////////////////////////////
set_current_tag(...) from builtins.PyCapsule
set_current_tag(self : rosetta.protocols.moves.Mover, new_tag : str) -> NoneType
set_input_pose(...) from builtins.PyCapsule
set_input_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
setter for poses contained for rms
set_native_pose(...) from builtins.PyCapsule
set_native_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
setter for native poses contained for rms ---- we should get rid of this method? it is widely used, but a bit unsafe
set_type(...) from builtins.PyCapsule
set_type(self : rosetta.protocols.moves.Mover, setting : str) -> NoneType
test_move(...) from builtins.PyCapsule
test_move(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
: Unit test support function.  Apply one move to a given pose.
      Allows extra test specific functions to be called before applying
type(...) from builtins.PyCapsule
type(*args, **kwargs)
Overloaded function.
 
1. type(rosetta.protocols.moves.Mover) -> str
 
2. type(self : rosetta.protocols.moves.Mover, type_in : str) -> NoneType

 
class BuildDeNovoBackboneMoverCreator(rosetta.protocols.moves.MoverCreator)
    
Method resolution order:
BuildDeNovoBackboneMoverCreator
rosetta.protocols.moves.MoverCreator
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(handle) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.denovo_design.movers.BuildDeNovoBackboneMoverCreator,  : rosetta.protocols.denovo_design.movers.BuildDeNovoBackboneMoverCreator) -> rosetta.protocols.denovo_design.movers.BuildDeNovoBackboneMoverCreator
create_mover(...) from builtins.PyCapsule
create_mover(rosetta.protocols.denovo_design.movers.BuildDeNovoBackboneMoverCreator) -> rosetta.protocols.moves.Mover
keyname(...) from builtins.PyCapsule
keyname(rosetta.protocols.denovo_design.movers.BuildDeNovoBackboneMoverCreator) -> str

 
class CutAndJump(builtins.object)
     Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(self : rosetta.protocols.denovo_design.movers.CutAndJump, cut_resid : int, jump_id : int) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.

Data descriptors defined here:
cutpoint
jump

 
class EXCN_NothingToFold(rosetta.utility.excn.EXCN_Base)
    
Method resolution order:
EXCN_NothingToFold
rosetta.utility.excn.EXCN_Base
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(self : handle, msg : str) -> NoneType
 
2. __init__(handle, rosetta.protocols.denovo_design.movers.EXCN_NothingToFold) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.denovo_design.movers.EXCN_NothingToFold,  : rosetta.protocols.denovo_design.movers.EXCN_NothingToFold) -> rosetta.protocols.denovo_design.movers.EXCN_NothingToFold

Methods inherited from rosetta.utility.excn.EXCN_Base:
__str__(...) from builtins.PyCapsule
__str__(rosetta.utility.excn.EXCN_Base) -> str
msg(...) from builtins.PyCapsule
msg(rosetta.utility.excn.EXCN_Base) -> str

 
class ExtendChainMover(rosetta.protocols.moves.Mover)
    
Method resolution order:
ExtendChainMover
rosetta.protocols.moves.Mover
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(handle) -> NoneType
 
2. __init__(handle, rosetta.protocols.denovo_design.movers.ExtendChainMover) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
apply(...) from builtins.PyCapsule
apply(self : rosetta.protocols.denovo_design.movers.ExtendChainMover, pose : rosetta.core.pose.Pose) -> NoneType
architect(...) from builtins.PyCapsule
architect(rosetta.protocols.denovo_design.movers.ExtendChainMover) -> rosetta.protocols.denovo_design.architects.DeNovoArchitect
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.denovo_design.movers.ExtendChainMover,  : rosetta.protocols.denovo_design.movers.ExtendChainMover) -> rosetta.protocols.denovo_design.movers.ExtendChainMover
class_name(...) from builtins.PyCapsule
class_name() -> str
clone(...) from builtins.PyCapsule
clone(rosetta.protocols.denovo_design.movers.ExtendChainMover) -> rosetta.protocols.moves.Mover
fresh_instance(...) from builtins.PyCapsule
fresh_instance(rosetta.protocols.denovo_design.movers.ExtendChainMover) -> rosetta.protocols.moves.Mover
get_name(...) from builtins.PyCapsule
get_name(rosetta.protocols.denovo_design.movers.ExtendChainMover) -> str
set_chain(...) from builtins.PyCapsule
set_chain(self : rosetta.protocols.denovo_design.movers.ExtendChainMover, chain : int) -> NoneType
set_dry_run(...) from builtins.PyCapsule
set_dry_run(self : rosetta.protocols.denovo_design.movers.ExtendChainMover, dry_run : bool) -> NoneType
set_prepend(...) from builtins.PyCapsule
set_prepend(self : rosetta.protocols.denovo_design.movers.ExtendChainMover, prepend : bool) -> NoneType
set_segment_names(...) from builtins.PyCapsule
set_segment_names(*args, **kwargs)
Overloaded function.
 
1. set_segment_names(self : rosetta.protocols.denovo_design.movers.ExtendChainMover, segment_names_str : str) -> NoneType
 
2. set_segment_names(self : rosetta.protocols.denovo_design.movers.ExtendChainMover, seg_names : rosetta.std.vector_std_string) -> NoneType

Methods inherited from rosetta.protocols.moves.Mover:
clear_info(...) from builtins.PyCapsule
clear_info(rosetta.protocols.moves.Mover) -> NoneType
 
Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.
 
 
 clear_info is called by jd2 before calling apply
create(...) from builtins.PyCapsule
create(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
get_additional_output(...) from builtins.PyCapsule
get_additional_output(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
 
fpd
 
 
 Mechanism by which a mover may return multiple output poses from a single input pose.
get_current_job(...) from builtins.PyCapsule
get_current_job(rosetta.protocols.moves.Mover) -> protocols::jobdist::BasicJob
get_current_tag(...) from builtins.PyCapsule
get_current_tag(rosetta.protocols.moves.Mover) -> str
 
A tag is a unique identifier used to identify structures produced
 by this Moverget_current_tag() returns the tag, and set_current_tag( std::string tag )
 sets the tag.  This functionality is not intended for use with the 2008 job distributor.
get_input_pose(...) from builtins.PyCapsule
get_input_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
get_last_move_status(...) from builtins.PyCapsule
get_last_move_status(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.MoverStatus
 
returns status after an apply().  The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say "that run was no good, skip it" then use the protected last_move_status(MoverStatus) to change the value that this function will return.
get_native_pose(...) from builtins.PyCapsule
get_native_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
get_self_ptr(...) from builtins.PyCapsule
get_self_ptr(*args, **kwargs)
Overloaded function.
 
1. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
 
2. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
get_self_weak_ptr(...) from builtins.PyCapsule
get_self_weak_ptr(*args, **kwargs)
Overloaded function.
 
1. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_const_protocols_moves_Mover_t
 
2. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_protocols_moves_Mover_t
get_type(...) from builtins.PyCapsule
get_type(rosetta.protocols.moves.Mover) -> str
info(...) from builtins.PyCapsule
info(*args, **kwargs)
Overloaded function.
 
1. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t
 
non-const accessor
 
2. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t
 
const accessor
last_proposal_density_ratio(...) from builtins.PyCapsule
last_proposal_density_ratio(rosetta.protocols.moves.Mover) -> float
name(...) from builtins.PyCapsule
name() -> str
register_options(...) from builtins.PyCapsule
register_options(*args, **kwargs)
Overloaded function.
 
1. register_options() -> NoneType
 
Overload this static method if you access options within the mover.
 
 
 These options will end up in -help of your application if users of this mover call register_options.
 Do this recursively!
 If you use movers within your mover, call their register_options in your register_options() method.
 
2. register_options() -> NoneType
 
3. register_options() -> NoneType
 
4. register_options() -> NoneType
 
5. register_options() -> NoneType
 
6. register_options() -> NoneType
 
7. register_options() -> NoneType
 
8. register_options() -> NoneType
 
9. register_options() -> NoneType
 
Associates relevant options with the AntibodyModeler class
 
10. register_options() -> NoneType
 
Associates relevant options with the AntibodyModeler class
 
11. register_options() -> NoneType
 
Associates relevant options with the SnugDock class
 
12. register_options() -> NoneType
 
Associates relevant options with the SnugDockProtocol class
 
13. register_options() -> NoneType
 
Register the options used by this mover with the global options
 system.
 
14. register_options() -> NoneType
 
15. register_options() -> NoneType
 
Associate relevant options with the TemperedDocking class.
 
16. register_options() -> NoneType
 
17. register_options() -> NoneType
 
18. register_options() -> NoneType
 
Associates relevant options with the TemperedDocking class.
 
19. register_options() -> NoneType
 
20. register_options() -> NoneType
 
Associates relevant options with the ConstraintSetMover class
 
21. register_options() -> NoneType
 
22. register_options() -> NoneType
 
Associates relevant options with the DockingInitialPerturbation class
 
23. register_options() -> NoneType
 
Associates relevant options with the DockingProtocol class
 
24. register_options() -> NoneType
 
Associates relevant options with the TemperedDocking class
 
25. register_options() -> NoneType
 
26. register_options() -> NoneType
 
27. register_options() -> NoneType
 
28. register_options() -> NoneType
 
register options
 
29. register_options() -> NoneType
 
30. register_options() -> NoneType
 
Registers applicable options
 
31. register_options() -> NoneType
 
Register options with the option system.
 
32. register_options() -> NoneType
 
33. register_options() -> NoneType
 
34. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
35. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycleContainer class
 
36. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
37. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
38. register_options() -> NoneType
 
39. register_options() -> NoneType
 
Register options with the option system.
 
40. register_options() -> NoneType
reinitialize_for_each_job(...) from builtins.PyCapsule
reinitialize_for_each_job(rosetta.protocols.moves.Mover) -> bool
 
Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on
 each use.
reinitialize_for_new_input(...) from builtins.PyCapsule
reinitialize_for_new_input(rosetta.protocols.moves.Mover) -> bool
 
Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input
 pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for
 that one input pose).
reset_status(...) from builtins.PyCapsule
reset_status(rosetta.protocols.moves.Mover) -> NoneType
 
resets status to SUCCESS, meant to be used before an apply().  The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.
set_current_job(...) from builtins.PyCapsule
set_current_job(self : rosetta.protocols.moves.Mover, job : protocols::jobdist::BasicJob) -> NoneType
 
////////////////////////////end Job Distributor interface////////////////////////////////////////
set_current_tag(...) from builtins.PyCapsule
set_current_tag(self : rosetta.protocols.moves.Mover, new_tag : str) -> NoneType
set_input_pose(...) from builtins.PyCapsule
set_input_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
setter for poses contained for rms
set_native_pose(...) from builtins.PyCapsule
set_native_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
setter for native poses contained for rms ---- we should get rid of this method? it is widely used, but a bit unsafe
set_type(...) from builtins.PyCapsule
set_type(self : rosetta.protocols.moves.Mover, setting : str) -> NoneType
test_move(...) from builtins.PyCapsule
test_move(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
: Unit test support function.  Apply one move to a given pose.
      Allows extra test specific functions to be called before applying
type(...) from builtins.PyCapsule
type(*args, **kwargs)
Overloaded function.
 
1. type(rosetta.protocols.moves.Mover) -> str
 
2. type(self : rosetta.protocols.moves.Mover, type_in : str) -> NoneType

 
class ExtendChainMoverCreator(rosetta.protocols.moves.MoverCreator)
    
Method resolution order:
ExtendChainMoverCreator
rosetta.protocols.moves.MoverCreator
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(handle) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.denovo_design.movers.ExtendChainMoverCreator,  : rosetta.protocols.denovo_design.movers.ExtendChainMoverCreator) -> rosetta.protocols.denovo_design.movers.ExtendChainMoverCreator
create_mover(...) from builtins.PyCapsule
create_mover(rosetta.protocols.denovo_design.movers.ExtendChainMoverCreator) -> rosetta.protocols.moves.Mover
keyname(...) from builtins.PyCapsule
keyname(rosetta.protocols.denovo_design.movers.ExtendChainMoverCreator) -> str

 
class FastDesign(rosetta.protocols.relax.FastRelax)
    
Method resolution order:
FastDesign
rosetta.protocols.relax.FastRelax
rosetta.protocols.relax.RelaxProtocolBase
rosetta.protocols.moves.Mover
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(handle) -> NoneType
 
2. __init__(handle, rosetta.core.scoring.ScoreFunction) -> NoneType
 
doc
 
3. __init__(self : handle, scorefxn_in : rosetta.core.scoring.ScoreFunction, standard_repeats : int) -> NoneType
 
4. __init__(handle, rosetta.protocols.denovo_design.movers.FastDesign) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
apply(...) from builtins.PyCapsule
apply(self : rosetta.protocols.denovo_design.movers.FastDesign, pose : rosetta.core.pose.Pose) -> NoneType
 
Apply the FastDesign. Overloaded apply function from mover base class.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.denovo_design.movers.FastDesign,  : rosetta.protocols.denovo_design.movers.FastDesign) -> rosetta.protocols.denovo_design.movers.FastDesign
class_name(...) from builtins.PyCapsule
class_name() -> str
clone(...) from builtins.PyCapsule
clone(rosetta.protocols.denovo_design.movers.FastDesign) -> rosetta.protocols.moves.Mover
 
return a copy of this class in an owning pointer
fresh_instance(...) from builtins.PyCapsule
fresh_instance(rosetta.protocols.denovo_design.movers.FastDesign) -> rosetta.protocols.moves.Mover
 
return a fresh instance of this class in an owning pointer
get_name(...) from builtins.PyCapsule
get_name(rosetta.protocols.denovo_design.movers.FastDesign) -> str
 
Return the name of this mover.
set_up_default_task_factory(...) from builtins.PyCapsule
set_up_default_task_factory(rosetta.protocols.denovo_design.movers.FastDesign) -> NoneType
 
Create the default task factory.  Must be called before design can occur.

Methods inherited from rosetta.protocols.relax.FastRelax:
batch_apply(...) from builtins.PyCapsule
batch_apply(*args, **kwargs)
Overloaded function.
 
1. batch_apply(self : rosetta.protocols.relax.FastRelax, input_structs : rosetta.std.vector_std_shared_ptr_core_io_silent_SilentStruct_t) -> NoneType
 
Batch Relax, a new even faster way to relax entire batches of structures.
 
2. batch_apply(self : rosetta.protocols.relax.FastRelax, input_structs : rosetta.std.vector_std_shared_ptr_core_io_silent_SilentStruct_t, input_csts : rosetta.core.scoring.constraints.ConstraintSet) -> NoneType
 
Batch Relax, a new even faster way to relax entire batches of structures.
 
3. batch_apply(self : rosetta.protocols.relax.FastRelax, input_structs : rosetta.std.vector_std_shared_ptr_core_io_silent_SilentStruct_t, input_csts : rosetta.core.scoring.constraints.ConstraintSet, decay_rate : float) -> NoneType
 
Batch Relax, a new even faster way to relax entire batches of structures.
default_repeats(...) from builtins.PyCapsule
default_repeats(rosetta.protocols.relax.FastRelax) -> int
 
Return the number of repeats
dualspace(...) from builtins.PyCapsule
dualspace(*args, **kwargs)
Overloaded function.
 
1. dualspace(self : rosetta.protocols.relax.FastRelax, val : bool) -> NoneType
 
Use the dualspace (Dihedral + Cartesian) relax protocol (Default false)
 
 
 
 Sets to use the lbfgs_armijo_nonmonotone if true or FR default if false
 Recommended to set max_iter to 200.
 Recommended to set minimize_bond_angles to true as well.
 Requires scorefunction setup for non-ideal minimization.
 
2. dualspace(rosetta.protocols.relax.FastRelax) -> bool
set_enable_design(...) from builtins.PyCapsule
set_enable_design(self : rosetta.protocols.relax.FastRelax, val : bool) -> NoneType
 
sets the enable_design option.
  Note - (Only used by ParseMyTag! Class will respect the passed TF otherwise, as it should.)
set_force_nonideal(...) from builtins.PyCapsule
set_force_nonideal(self : rosetta.protocols.relax.FastRelax, val : bool) -> NoneType
 
Force us to batchrelax with nonideal geometry (using additional memory)
set_script_from_lines(...) from builtins.PyCapsule
set_script_from_lines(self : rosetta.protocols.relax.FastRelax, filelines : rosetta.std.vector_std_string) -> NoneType
 
replace schedule by providing lines of commands explicitly
set_script_to_batchrelax_default(...) from builtins.PyCapsule
set_script_to_batchrelax_default(*args, **kwargs)
Overloaded function.
 
1. set_script_to_batchrelax_default(rosetta.protocols.relax.FastRelax) -> NoneType
 
Override the stored script with the default script for batchrelax
        Ignores '-default_repeat' value
 
2. set_script_to_batchrelax_default(self : rosetta.protocols.relax.FastRelax, standard_repeats : int) -> NoneType
 
Override the stored script with the default script for batchrelax
        Ignores '-default_repeat' value
set_to_default(...) from builtins.PyCapsule
set_to_default(rosetta.protocols.relax.FastRelax) -> NoneType
 
Initializes class using option system. This is called by the constructors

Methods inherited from rosetta.protocols.relax.RelaxProtocolBase:
apply_disulfides(...) from builtins.PyCapsule
apply_disulfides(self : rosetta.protocols.relax.RelaxProtocolBase, pose : rosetta.core.pose.Pose) -> NoneType
cartesian(...) from builtins.PyCapsule
cartesian(*args, **kwargs)
Overloaded function.
 
1. cartesian(rosetta.protocols.relax.RelaxProtocolBase) -> bool
 
2. cartesian(self : rosetta.protocols.relax.RelaxProtocolBase, newval : bool) -> NoneType
 
Use cartesian (minimization step)
 
 
 
 Sets to use the lbfgs_armijo_nonmonotone if true or FR default if false
 Recommended to set max_iter to 200.
 Requires scorefunction setup for non-ideal minimization.
constrain_coords(...) from builtins.PyCapsule
constrain_coords(*args, **kwargs)
Overloaded function.
 
1. constrain_coords(rosetta.protocols.relax.RelaxProtocolBase) -> bool
 
2. constrain_coords(self : rosetta.protocols.relax.RelaxProtocolBase, constrain_coords : bool) -> NoneType
constrain_relax_segments(...) from builtins.PyCapsule
constrain_relax_segments(*args, **kwargs)
Overloaded function.
 
1. constrain_relax_segments(rosetta.protocols.relax.RelaxProtocolBase) -> bool
 
2. constrain_relax_segments(self : rosetta.protocols.relax.RelaxProtocolBase, constrain_relax_segments : bool) -> NoneType
constrain_relax_to_native_coords(...) from builtins.PyCapsule
constrain_relax_to_native_coords(*args, **kwargs)
Overloaded function.
 
1. constrain_relax_to_native_coords(rosetta.protocols.relax.RelaxProtocolBase) -> bool
 
2. constrain_relax_to_native_coords(self : rosetta.protocols.relax.RelaxProtocolBase, constrain_relax_to_native_coords : bool) -> NoneType
constrain_relax_to_start_coords(...) from builtins.PyCapsule
constrain_relax_to_start_coords(*args, **kwargs)
Overloaded function.
 
1. constrain_relax_to_start_coords(rosetta.protocols.relax.RelaxProtocolBase) -> bool
 
2. constrain_relax_to_start_coords(self : rosetta.protocols.relax.RelaxProtocolBase, constrain_relax_to_start_coords : bool) -> NoneType
dry_run(...) from builtins.PyCapsule
dry_run(*args, **kwargs)
Overloaded function.
 
1. dry_run(rosetta.protocols.relax.RelaxProtocolBase) -> bool
 
2. dry_run(self : rosetta.protocols.relax.RelaxProtocolBase, setting : bool) -> NoneType
explicit_ramp_constraints(...) from builtins.PyCapsule
explicit_ramp_constraints(rosetta.protocols.relax.RelaxProtocolBase) -> bool
get_movemap(...) from builtins.PyCapsule
get_movemap(*args, **kwargs)
Overloaded function.
 
1. get_movemap(rosetta.protocols.relax.RelaxProtocolBase) -> rosetta.core.kinematics.MoveMap
 
2. get_movemap(rosetta.protocols.relax.RelaxProtocolBase) -> rosetta.core.kinematics.MoveMap
get_scorefxn(...) from builtins.PyCapsule
get_scorefxn(rosetta.protocols.relax.RelaxProtocolBase) -> rosetta.core.scoring.ScoreFunction
get_task_factory(...) from builtins.PyCapsule
get_task_factory(rosetta.protocols.relax.RelaxProtocolBase) -> rosetta.core.pack.task.TaskFactory
max_iter(...) from builtins.PyCapsule
max_iter(*args, **kwargs)
Overloaded function.
 
1. max_iter(rosetta.protocols.relax.RelaxProtocolBase) -> int
 
2. max_iter(self : rosetta.protocols.relax.RelaxProtocolBase, max_iter : int) -> NoneType
min_type(...) from builtins.PyCapsule
min_type(*args, **kwargs)
Overloaded function.
 
1. min_type(rosetta.protocols.relax.RelaxProtocolBase) -> str
 
2. min_type(self : rosetta.protocols.relax.RelaxProtocolBase, min_type : str) -> NoneType
minimize_bond_angles(...) from builtins.PyCapsule
minimize_bond_angles(*args, **kwargs)
Overloaded function.
 
1. minimize_bond_angles(rosetta.protocols.relax.RelaxProtocolBase) -> bool
 
2. minimize_bond_angles(self : rosetta.protocols.relax.RelaxProtocolBase, minimize_bond_angles : bool) -> NoneType
minimize_bond_lengths(...) from builtins.PyCapsule
minimize_bond_lengths(*args, **kwargs)
Overloaded function.
 
1. minimize_bond_lengths(rosetta.protocols.relax.RelaxProtocolBase) -> bool
 
2. minimize_bond_lengths(self : rosetta.protocols.relax.RelaxProtocolBase, minimize_bond_lengths : bool) -> NoneType
ramp_down_constraints(...) from builtins.PyCapsule
ramp_down_constraints(*args, **kwargs)
Overloaded function.
 
1. ramp_down_constraints(rosetta.protocols.relax.RelaxProtocolBase) -> bool
 
2. ramp_down_constraints(self : rosetta.protocols.relax.RelaxProtocolBase, ramp_down_constraints : bool) -> NoneType
register_options(...) from builtins.PyCapsule
register_options(*args, **kwargs)
Overloaded function.
 
1. register_options() -> NoneType
 
Overload this static method if you access options within the mover.
 
 
 These options will end up in -help of your application if users of this mover call register_options.
 Do this recursively!
 If you use movers within your mover, call their register_options in your register_options() method.
 
2. register_options() -> NoneType
 
3. register_options() -> NoneType
 
4. register_options() -> NoneType
 
5. register_options() -> NoneType
 
6. register_options() -> NoneType
 
7. register_options() -> NoneType
 
8. register_options() -> NoneType
 
9. register_options() -> NoneType
 
Associates relevant options with the AntibodyModeler class
 
10. register_options() -> NoneType
 
Associates relevant options with the AntibodyModeler class
 
11. register_options() -> NoneType
 
Associates relevant options with the SnugDock class
 
12. register_options() -> NoneType
 
Associates relevant options with the SnugDockProtocol class
 
13. register_options() -> NoneType
 
Register the options used by this mover with the global options
 system.
 
14. register_options() -> NoneType
 
15. register_options() -> NoneType
 
Associate relevant options with the TemperedDocking class.
 
16. register_options() -> NoneType
 
17. register_options() -> NoneType
 
18. register_options() -> NoneType
 
Associates relevant options with the TemperedDocking class.
 
19. register_options() -> NoneType
 
20. register_options() -> NoneType
 
Associates relevant options with the ConstraintSetMover class
 
21. register_options() -> NoneType
 
22. register_options() -> NoneType
 
Associates relevant options with the DockingInitialPerturbation class
 
23. register_options() -> NoneType
 
Associates relevant options with the DockingProtocol class
 
24. register_options() -> NoneType
 
Associates relevant options with the TemperedDocking class
 
25. register_options() -> NoneType
 
26. register_options() -> NoneType
 
27. register_options() -> NoneType
 
28. register_options() -> NoneType
 
register options
 
29. register_options() -> NoneType
 
30. register_options() -> NoneType
 
Registers applicable options
 
31. register_options() -> NoneType
 
Register options with the option system.
 
32. register_options() -> NoneType
 
33. register_options() -> NoneType
 
34. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
35. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycleContainer class
 
36. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
37. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
38. register_options() -> NoneType
 
39. register_options() -> NoneType
 
Register options with the option system.
 
40. register_options() -> NoneType
set_default_coordinate_settings(...) from builtins.PyCapsule
set_default_coordinate_settings(rosetta.protocols.relax.RelaxProtocolBase) -> NoneType
set_default_minimization_settings(...) from builtins.PyCapsule
set_default_minimization_settings(rosetta.protocols.relax.RelaxProtocolBase) -> NoneType
set_default_movemap(...) from builtins.PyCapsule
set_default_movemap(rosetta.protocols.relax.RelaxProtocolBase) -> NoneType
set_defaults(...) from builtins.PyCapsule
set_defaults(rosetta.protocols.relax.RelaxProtocolBase) -> NoneType
set_movemap(...) from builtins.PyCapsule
set_movemap(self : rosetta.protocols.relax.RelaxProtocolBase, movemap : rosetta.core.kinematics.MoveMap) -> NoneType
set_scorefxn(...) from builtins.PyCapsule
set_scorefxn(self : rosetta.protocols.relax.RelaxProtocolBase, scorefxn : rosetta.core.scoring.ScoreFunction) -> NoneType
set_task_factory(...) from builtins.PyCapsule
set_task_factory(self : rosetta.protocols.relax.RelaxProtocolBase, task_factory : rosetta.core.pack.task.TaskFactory) -> NoneType

Methods inherited from rosetta.protocols.moves.Mover:
clear_info(...) from builtins.PyCapsule
clear_info(rosetta.protocols.moves.Mover) -> NoneType
 
Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.
 
 
 clear_info is called by jd2 before calling apply
create(...) from builtins.PyCapsule
create(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
get_additional_output(...) from builtins.PyCapsule
get_additional_output(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
 
fpd
 
 
 Mechanism by which a mover may return multiple output poses from a single input pose.
get_current_job(...) from builtins.PyCapsule
get_current_job(rosetta.protocols.moves.Mover) -> protocols::jobdist::BasicJob
get_current_tag(...) from builtins.PyCapsule
get_current_tag(rosetta.protocols.moves.Mover) -> str
 
A tag is a unique identifier used to identify structures produced
 by this Moverget_current_tag() returns the tag, and set_current_tag( std::string tag )
 sets the tag.  This functionality is not intended for use with the 2008 job distributor.
get_input_pose(...) from builtins.PyCapsule
get_input_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
get_last_move_status(...) from builtins.PyCapsule
get_last_move_status(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.MoverStatus
 
returns status after an apply().  The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say "that run was no good, skip it" then use the protected last_move_status(MoverStatus) to change the value that this function will return.
get_native_pose(...) from builtins.PyCapsule
get_native_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
get_self_ptr(...) from builtins.PyCapsule
get_self_ptr(*args, **kwargs)
Overloaded function.
 
1. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
 
2. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
get_self_weak_ptr(...) from builtins.PyCapsule
get_self_weak_ptr(*args, **kwargs)
Overloaded function.
 
1. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_const_protocols_moves_Mover_t
 
2. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_protocols_moves_Mover_t
get_type(...) from builtins.PyCapsule
get_type(rosetta.protocols.moves.Mover) -> str
info(...) from builtins.PyCapsule
info(*args, **kwargs)
Overloaded function.
 
1. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t
 
non-const accessor
 
2. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t
 
const accessor
last_proposal_density_ratio(...) from builtins.PyCapsule
last_proposal_density_ratio(rosetta.protocols.moves.Mover) -> float
name(...) from builtins.PyCapsule
name() -> str
reinitialize_for_each_job(...) from builtins.PyCapsule
reinitialize_for_each_job(rosetta.protocols.moves.Mover) -> bool
 
Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on
 each use.
reinitialize_for_new_input(...) from builtins.PyCapsule
reinitialize_for_new_input(rosetta.protocols.moves.Mover) -> bool
 
Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input
 pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for
 that one input pose).
reset_status(...) from builtins.PyCapsule
reset_status(rosetta.protocols.moves.Mover) -> NoneType
 
resets status to SUCCESS, meant to be used before an apply().  The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.
set_current_job(...) from builtins.PyCapsule
set_current_job(self : rosetta.protocols.moves.Mover, job : protocols::jobdist::BasicJob) -> NoneType
 
////////////////////////////end Job Distributor interface////////////////////////////////////////
set_current_tag(...) from builtins.PyCapsule
set_current_tag(self : rosetta.protocols.moves.Mover, new_tag : str) -> NoneType
set_input_pose(...) from builtins.PyCapsule
set_input_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
setter for poses contained for rms
set_native_pose(...) from builtins.PyCapsule
set_native_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
setter for native poses contained for rms ---- we should get rid of this method? it is widely used, but a bit unsafe
set_type(...) from builtins.PyCapsule
set_type(self : rosetta.protocols.moves.Mover, setting : str) -> NoneType
test_move(...) from builtins.PyCapsule
test_move(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
: Unit test support function.  Apply one move to a given pose.
      Allows extra test specific functions to be called before applying
type(...) from builtins.PyCapsule
type(*args, **kwargs)
Overloaded function.
 
1. type(rosetta.protocols.moves.Mover) -> str
 
2. type(self : rosetta.protocols.moves.Mover, type_in : str) -> NoneType

 
class FastDesignCreator(rosetta.protocols.moves.MoverCreator)
    
Method resolution order:
FastDesignCreator
rosetta.protocols.moves.MoverCreator
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(handle) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.denovo_design.movers.FastDesignCreator,  : rosetta.protocols.denovo_design.movers.FastDesignCreator) -> rosetta.protocols.denovo_design.movers.FastDesignCreator
create_mover(...) from builtins.PyCapsule
create_mover(rosetta.protocols.denovo_design.movers.FastDesignCreator) -> rosetta.protocols.moves.Mover
keyname(...) from builtins.PyCapsule
keyname(rosetta.protocols.denovo_design.movers.FastDesignCreator) -> str

 
class FoldTreeFromFoldGraphMover(rosetta.protocols.moves.Mover)
    Creates and sets a new fold tree for the pose by traversing a FoldGraph
 
 
Method resolution order:
FoldTreeFromFoldGraphMover
rosetta.protocols.moves.Mover
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(handle) -> NoneType
 
2. __init__(self : handle, roots : rosetta.std.vector_std_string, loops : rosetta.protocols.loops.Loops) -> NoneType
 
3. __init__(handle, rosetta.protocols.denovo_design.movers.FoldTreeFromFoldGraphMover) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
__str__(...) from builtins.PyCapsule
__str__(rosetta.protocols.denovo_design.movers.FoldTreeFromFoldGraphMover) -> str
apply(...) from builtins.PyCapsule
apply(self : rosetta.protocols.denovo_design.movers.FoldTreeFromFoldGraphMover, pose : rosetta.core.pose.Pose) -> NoneType
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.denovo_design.movers.FoldTreeFromFoldGraphMover,  : rosetta.protocols.denovo_design.movers.FoldTreeFromFoldGraphMover) -> rosetta.protocols.denovo_design.movers.FoldTreeFromFoldGraphMover
class_name(...) from builtins.PyCapsule
class_name() -> str
clone(...) from builtins.PyCapsule
clone(rosetta.protocols.denovo_design.movers.FoldTreeFromFoldGraphMover) -> rosetta.protocols.moves.Mover
 
required in the context of the parser/scripting scheme
fresh_instance(...) from builtins.PyCapsule
fresh_instance(rosetta.protocols.denovo_design.movers.FoldTreeFromFoldGraphMover) -> rosetta.protocols.moves.Mover
 
required in the context of the parser/scripting scheme
get_name(...) from builtins.PyCapsule
get_name(rosetta.protocols.denovo_design.movers.FoldTreeFromFoldGraphMover) -> str
set_roots(...) from builtins.PyCapsule
set_roots(self : rosetta.protocols.denovo_design.movers.FoldTreeFromFoldGraphMover, roots : rosetta.std.vector_std_string) -> NoneType

Methods inherited from rosetta.protocols.moves.Mover:
clear_info(...) from builtins.PyCapsule
clear_info(rosetta.protocols.moves.Mover) -> NoneType
 
Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.
 
 
 clear_info is called by jd2 before calling apply
create(...) from builtins.PyCapsule
create(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
get_additional_output(...) from builtins.PyCapsule
get_additional_output(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
 
fpd
 
 
 Mechanism by which a mover may return multiple output poses from a single input pose.
get_current_job(...) from builtins.PyCapsule
get_current_job(rosetta.protocols.moves.Mover) -> protocols::jobdist::BasicJob
get_current_tag(...) from builtins.PyCapsule
get_current_tag(rosetta.protocols.moves.Mover) -> str
 
A tag is a unique identifier used to identify structures produced
 by this Moverget_current_tag() returns the tag, and set_current_tag( std::string tag )
 sets the tag.  This functionality is not intended for use with the 2008 job distributor.
get_input_pose(...) from builtins.PyCapsule
get_input_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
get_last_move_status(...) from builtins.PyCapsule
get_last_move_status(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.MoverStatus
 
returns status after an apply().  The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say "that run was no good, skip it" then use the protected last_move_status(MoverStatus) to change the value that this function will return.
get_native_pose(...) from builtins.PyCapsule
get_native_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
get_self_ptr(...) from builtins.PyCapsule
get_self_ptr(*args, **kwargs)
Overloaded function.
 
1. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
 
2. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
get_self_weak_ptr(...) from builtins.PyCapsule
get_self_weak_ptr(*args, **kwargs)
Overloaded function.
 
1. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_const_protocols_moves_Mover_t
 
2. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_protocols_moves_Mover_t
get_type(...) from builtins.PyCapsule
get_type(rosetta.protocols.moves.Mover) -> str
info(...) from builtins.PyCapsule
info(*args, **kwargs)
Overloaded function.
 
1. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t
 
non-const accessor
 
2. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t
 
const accessor
last_proposal_density_ratio(...) from builtins.PyCapsule
last_proposal_density_ratio(rosetta.protocols.moves.Mover) -> float
name(...) from builtins.PyCapsule
name() -> str
register_options(...) from builtins.PyCapsule
register_options(*args, **kwargs)
Overloaded function.
 
1. register_options() -> NoneType
 
Overload this static method if you access options within the mover.
 
 
 These options will end up in -help of your application if users of this mover call register_options.
 Do this recursively!
 If you use movers within your mover, call their register_options in your register_options() method.
 
2. register_options() -> NoneType
 
3. register_options() -> NoneType
 
4. register_options() -> NoneType
 
5. register_options() -> NoneType
 
6. register_options() -> NoneType
 
7. register_options() -> NoneType
 
8. register_options() -> NoneType
 
9. register_options() -> NoneType
 
Associates relevant options with the AntibodyModeler class
 
10. register_options() -> NoneType
 
Associates relevant options with the AntibodyModeler class
 
11. register_options() -> NoneType
 
Associates relevant options with the SnugDock class
 
12. register_options() -> NoneType
 
Associates relevant options with the SnugDockProtocol class
 
13. register_options() -> NoneType
 
Register the options used by this mover with the global options
 system.
 
14. register_options() -> NoneType
 
15. register_options() -> NoneType
 
Associate relevant options with the TemperedDocking class.
 
16. register_options() -> NoneType
 
17. register_options() -> NoneType
 
18. register_options() -> NoneType
 
Associates relevant options with the TemperedDocking class.
 
19. register_options() -> NoneType
 
20. register_options() -> NoneType
 
Associates relevant options with the ConstraintSetMover class
 
21. register_options() -> NoneType
 
22. register_options() -> NoneType
 
Associates relevant options with the DockingInitialPerturbation class
 
23. register_options() -> NoneType
 
Associates relevant options with the DockingProtocol class
 
24. register_options() -> NoneType
 
Associates relevant options with the TemperedDocking class
 
25. register_options() -> NoneType
 
26. register_options() -> NoneType
 
27. register_options() -> NoneType
 
28. register_options() -> NoneType
 
register options
 
29. register_options() -> NoneType
 
30. register_options() -> NoneType
 
Registers applicable options
 
31. register_options() -> NoneType
 
Register options with the option system.
 
32. register_options() -> NoneType
 
33. register_options() -> NoneType
 
34. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
35. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycleContainer class
 
36. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
37. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
38. register_options() -> NoneType
 
39. register_options() -> NoneType
 
Register options with the option system.
 
40. register_options() -> NoneType
reinitialize_for_each_job(...) from builtins.PyCapsule
reinitialize_for_each_job(rosetta.protocols.moves.Mover) -> bool
 
Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on
 each use.
reinitialize_for_new_input(...) from builtins.PyCapsule
reinitialize_for_new_input(rosetta.protocols.moves.Mover) -> bool
 
Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input
 pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for
 that one input pose).
reset_status(...) from builtins.PyCapsule
reset_status(rosetta.protocols.moves.Mover) -> NoneType
 
resets status to SUCCESS, meant to be used before an apply().  The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.
set_current_job(...) from builtins.PyCapsule
set_current_job(self : rosetta.protocols.moves.Mover, job : protocols::jobdist::BasicJob) -> NoneType
 
////////////////////////////end Job Distributor interface////////////////////////////////////////
set_current_tag(...) from builtins.PyCapsule
set_current_tag(self : rosetta.protocols.moves.Mover, new_tag : str) -> NoneType
set_input_pose(...) from builtins.PyCapsule
set_input_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
setter for poses contained for rms
set_native_pose(...) from builtins.PyCapsule
set_native_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
setter for native poses contained for rms ---- we should get rid of this method? it is widely used, but a bit unsafe
set_type(...) from builtins.PyCapsule
set_type(self : rosetta.protocols.moves.Mover, setting : str) -> NoneType
test_move(...) from builtins.PyCapsule
test_move(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
: Unit test support function.  Apply one move to a given pose.
      Allows extra test specific functions to be called before applying
type(...) from builtins.PyCapsule
type(*args, **kwargs)
Overloaded function.
 
1. type(rosetta.protocols.moves.Mover) -> str
 
2. type(self : rosetta.protocols.moves.Mover, type_in : str) -> NoneType

 
class FoldTreeFromFoldGraphMoverCreator(rosetta.protocols.moves.MoverCreator)
    
Method resolution order:
FoldTreeFromFoldGraphMoverCreator
rosetta.protocols.moves.MoverCreator
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(handle) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.denovo_design.movers.FoldTreeFromFoldGraphMoverCreator,  : rosetta.protocols.denovo_design.movers.FoldTreeFromFoldGraphMoverCreator) -> rosetta.protocols.denovo_design.movers.FoldTreeFromFoldGraphMoverCreator
create_mover(...) from builtins.PyCapsule
create_mover(rosetta.protocols.denovo_design.movers.FoldTreeFromFoldGraphMoverCreator) -> rosetta.protocols.moves.Mover
keyname(...) from builtins.PyCapsule
keyname(rosetta.protocols.denovo_design.movers.FoldTreeFromFoldGraphMoverCreator) -> str

 
class RelaxScriptCommand(builtins.object)
     Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(rosetta.protocols.denovo_design.movers.RelaxScriptCommand) -> NoneType
 
2. __init__(self : rosetta.protocols.denovo_design.movers.RelaxScriptCommand,  : rosetta.protocols.denovo_design.movers.RelaxScriptCommand) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.denovo_design.movers.RelaxScriptCommand,  : rosetta.protocols.denovo_design.movers.RelaxScriptCommand) -> rosetta.protocols.denovo_design.movers.RelaxScriptCommand

Data descriptors defined here:
command
nparams
param1
param2
param3
param4

 
class RotateSegmentMover(rosetta.protocols.moves.Mover)
    Rotates a segment in the pose
 
 
Method resolution order:
RotateSegmentMover
rosetta.protocols.moves.Mover
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(handle) -> NoneType
 
2. __init__(handle, rosetta.protocols.denovo_design.movers.RotateSegmentMover) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
apply(...) from builtins.PyCapsule
apply(*args, **kwargs)
Overloaded function.
 
1. apply(self : rosetta.protocols.denovo_design.movers.RotateSegmentMover, pose : rosetta.core.pose.Pose) -> NoneType
 
2. apply(self : rosetta.protocols.denovo_design.movers.RotateSegmentMover, pose : rosetta.core.pose.Pose, random : float) -> NoneType
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.denovo_design.movers.RotateSegmentMover,  : rosetta.protocols.denovo_design.movers.RotateSegmentMover) -> rosetta.protocols.denovo_design.movers.RotateSegmentMover
class_name(...) from builtins.PyCapsule
class_name() -> str
clone(...) from builtins.PyCapsule
clone(rosetta.protocols.denovo_design.movers.RotateSegmentMover) -> rosetta.protocols.moves.Mover
fresh_instance(...) from builtins.PyCapsule
fresh_instance(rosetta.protocols.denovo_design.movers.RotateSegmentMover) -> rosetta.protocols.moves.Mover
get_name(...) from builtins.PyCapsule
get_name(rosetta.protocols.denovo_design.movers.RotateSegmentMover) -> str
set_rotation_range(...) from builtins.PyCapsule
set_rotation_range(self : rosetta.protocols.denovo_design.movers.RotateSegmentMover, start : float, stop : float) -> NoneType

Methods inherited from rosetta.protocols.moves.Mover:
clear_info(...) from builtins.PyCapsule
clear_info(rosetta.protocols.moves.Mover) -> NoneType
 
Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.
 
 
 clear_info is called by jd2 before calling apply
create(...) from builtins.PyCapsule
create(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
get_additional_output(...) from builtins.PyCapsule
get_additional_output(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
 
fpd
 
 
 Mechanism by which a mover may return multiple output poses from a single input pose.
get_current_job(...) from builtins.PyCapsule
get_current_job(rosetta.protocols.moves.Mover) -> protocols::jobdist::BasicJob
get_current_tag(...) from builtins.PyCapsule
get_current_tag(rosetta.protocols.moves.Mover) -> str
 
A tag is a unique identifier used to identify structures produced
 by this Moverget_current_tag() returns the tag, and set_current_tag( std::string tag )
 sets the tag.  This functionality is not intended for use with the 2008 job distributor.
get_input_pose(...) from builtins.PyCapsule
get_input_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
get_last_move_status(...) from builtins.PyCapsule
get_last_move_status(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.MoverStatus
 
returns status after an apply().  The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say "that run was no good, skip it" then use the protected last_move_status(MoverStatus) to change the value that this function will return.
get_native_pose(...) from builtins.PyCapsule
get_native_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
get_self_ptr(...) from builtins.PyCapsule
get_self_ptr(*args, **kwargs)
Overloaded function.
 
1. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
 
2. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
get_self_weak_ptr(...) from builtins.PyCapsule
get_self_weak_ptr(*args, **kwargs)
Overloaded function.
 
1. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_const_protocols_moves_Mover_t
 
2. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_protocols_moves_Mover_t
get_type(...) from builtins.PyCapsule
get_type(rosetta.protocols.moves.Mover) -> str
info(...) from builtins.PyCapsule
info(*args, **kwargs)
Overloaded function.
 
1. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t
 
non-const accessor
 
2. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t
 
const accessor
last_proposal_density_ratio(...) from builtins.PyCapsule
last_proposal_density_ratio(rosetta.protocols.moves.Mover) -> float
name(...) from builtins.PyCapsule
name() -> str
register_options(...) from builtins.PyCapsule
register_options(*args, **kwargs)
Overloaded function.
 
1. register_options() -> NoneType
 
Overload this static method if you access options within the mover.
 
 
 These options will end up in -help of your application if users of this mover call register_options.
 Do this recursively!
 If you use movers within your mover, call their register_options in your register_options() method.
 
2. register_options() -> NoneType
 
3. register_options() -> NoneType
 
4. register_options() -> NoneType
 
5. register_options() -> NoneType
 
6. register_options() -> NoneType
 
7. register_options() -> NoneType
 
8. register_options() -> NoneType
 
9. register_options() -> NoneType
 
Associates relevant options with the AntibodyModeler class
 
10. register_options() -> NoneType
 
Associates relevant options with the AntibodyModeler class
 
11. register_options() -> NoneType
 
Associates relevant options with the SnugDock class
 
12. register_options() -> NoneType
 
Associates relevant options with the SnugDockProtocol class
 
13. register_options() -> NoneType
 
Register the options used by this mover with the global options
 system.
 
14. register_options() -> NoneType
 
15. register_options() -> NoneType
 
Associate relevant options with the TemperedDocking class.
 
16. register_options() -> NoneType
 
17. register_options() -> NoneType
 
18. register_options() -> NoneType
 
Associates relevant options with the TemperedDocking class.
 
19. register_options() -> NoneType
 
20. register_options() -> NoneType
 
Associates relevant options with the ConstraintSetMover class
 
21. register_options() -> NoneType
 
22. register_options() -> NoneType
 
Associates relevant options with the DockingInitialPerturbation class
 
23. register_options() -> NoneType
 
Associates relevant options with the DockingProtocol class
 
24. register_options() -> NoneType
 
Associates relevant options with the TemperedDocking class
 
25. register_options() -> NoneType
 
26. register_options() -> NoneType
 
27. register_options() -> NoneType
 
28. register_options() -> NoneType
 
register options
 
29. register_options() -> NoneType
 
30. register_options() -> NoneType
 
Registers applicable options
 
31. register_options() -> NoneType
 
Register options with the option system.
 
32. register_options() -> NoneType
 
33. register_options() -> NoneType
 
34. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
35. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycleContainer class
 
36. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
37. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
38. register_options() -> NoneType
 
39. register_options() -> NoneType
 
Register options with the option system.
 
40. register_options() -> NoneType
reinitialize_for_each_job(...) from builtins.PyCapsule
reinitialize_for_each_job(rosetta.protocols.moves.Mover) -> bool
 
Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on
 each use.
reinitialize_for_new_input(...) from builtins.PyCapsule
reinitialize_for_new_input(rosetta.protocols.moves.Mover) -> bool
 
Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input
 pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for
 that one input pose).
reset_status(...) from builtins.PyCapsule
reset_status(rosetta.protocols.moves.Mover) -> NoneType
 
resets status to SUCCESS, meant to be used before an apply().  The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.
set_current_job(...) from builtins.PyCapsule
set_current_job(self : rosetta.protocols.moves.Mover, job : protocols::jobdist::BasicJob) -> NoneType
 
////////////////////////////end Job Distributor interface////////////////////////////////////////
set_current_tag(...) from builtins.PyCapsule
set_current_tag(self : rosetta.protocols.moves.Mover, new_tag : str) -> NoneType
set_input_pose(...) from builtins.PyCapsule
set_input_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
setter for poses contained for rms
set_native_pose(...) from builtins.PyCapsule
set_native_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
setter for native poses contained for rms ---- we should get rid of this method? it is widely used, but a bit unsafe
set_type(...) from builtins.PyCapsule
set_type(self : rosetta.protocols.moves.Mover, setting : str) -> NoneType
test_move(...) from builtins.PyCapsule
test_move(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
: Unit test support function.  Apply one move to a given pose.
      Allows extra test specific functions to be called before applying
type(...) from builtins.PyCapsule
type(*args, **kwargs)
Overloaded function.
 
1. type(rosetta.protocols.moves.Mover) -> str
 
2. type(self : rosetta.protocols.moves.Mover, type_in : str) -> NoneType

 
class RotateSegmentMoverCreator(rosetta.protocols.moves.MoverCreator)
    
Method resolution order:
RotateSegmentMoverCreator
rosetta.protocols.moves.MoverCreator
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(handle) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.denovo_design.movers.RotateSegmentMoverCreator,  : rosetta.protocols.denovo_design.movers.RotateSegmentMoverCreator) -> rosetta.protocols.denovo_design.movers.RotateSegmentMoverCreator
create_mover(...) from builtins.PyCapsule
create_mover(rosetta.protocols.denovo_design.movers.RotateSegmentMoverCreator) -> rosetta.protocols.moves.Mover
keyname(...) from builtins.PyCapsule
keyname(rosetta.protocols.denovo_design.movers.RotateSegmentMoverCreator) -> str

 
class RotationRange(builtins.object)
     Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(self : rosetta.protocols.denovo_design.movers.RotationRange, start_val : float, stop_val : float) -> NoneType
 
2. __init__(self : rosetta.protocols.denovo_design.movers.RotationRange,  : rosetta.protocols.denovo_design.movers.RotationRange) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.denovo_design.movers.RotationRange,  : rosetta.protocols.denovo_design.movers.RotationRange) -> rosetta.protocols.denovo_design.movers.RotationRange

Data descriptors defined here:
start
stop

 
class SealFoldTreeMover(rosetta.protocols.moves.Mover)
    Creates a sealed foldtree, and removes all cutpoints from the pose
 
 
Method resolution order:
SealFoldTreeMover
rosetta.protocols.moves.Mover
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(handle) -> NoneType
 
2. __init__(self : handle, sd : rosetta.protocols.denovo_design.components.StructureData, loops : rosetta.protocols.loops.Loops) -> NoneType
 
3. __init__(handle, rosetta.protocols.denovo_design.movers.SealFoldTreeMover) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
__str__(...) from builtins.PyCapsule
__str__(rosetta.protocols.denovo_design.movers.SealFoldTreeMover) -> str
apply(...) from builtins.PyCapsule
apply(self : rosetta.protocols.denovo_design.movers.SealFoldTreeMover, pose : rosetta.core.pose.Pose) -> NoneType
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.denovo_design.movers.SealFoldTreeMover,  : rosetta.protocols.denovo_design.movers.SealFoldTreeMover) -> rosetta.protocols.denovo_design.movers.SealFoldTreeMover
class_name(...) from builtins.PyCapsule
class_name() -> str
clone(...) from builtins.PyCapsule
clone(rosetta.protocols.denovo_design.movers.SealFoldTreeMover) -> rosetta.protocols.moves.Mover
 
required in the context of the parser/scripting scheme
fresh_instance(...) from builtins.PyCapsule
fresh_instance(rosetta.protocols.denovo_design.movers.SealFoldTreeMover) -> rosetta.protocols.moves.Mover
 
required in the context of the parser/scripting scheme
get_name(...) from builtins.PyCapsule
get_name(rosetta.protocols.denovo_design.movers.SealFoldTreeMover) -> str

Methods inherited from rosetta.protocols.moves.Mover:
clear_info(...) from builtins.PyCapsule
clear_info(rosetta.protocols.moves.Mover) -> NoneType
 
Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.
 
 
 clear_info is called by jd2 before calling apply
create(...) from builtins.PyCapsule
create(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
get_additional_output(...) from builtins.PyCapsule
get_additional_output(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
 
fpd
 
 
 Mechanism by which a mover may return multiple output poses from a single input pose.
get_current_job(...) from builtins.PyCapsule
get_current_job(rosetta.protocols.moves.Mover) -> protocols::jobdist::BasicJob
get_current_tag(...) from builtins.PyCapsule
get_current_tag(rosetta.protocols.moves.Mover) -> str
 
A tag is a unique identifier used to identify structures produced
 by this Moverget_current_tag() returns the tag, and set_current_tag( std::string tag )
 sets the tag.  This functionality is not intended for use with the 2008 job distributor.
get_input_pose(...) from builtins.PyCapsule
get_input_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
get_last_move_status(...) from builtins.PyCapsule
get_last_move_status(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.MoverStatus
 
returns status after an apply().  The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say "that run was no good, skip it" then use the protected last_move_status(MoverStatus) to change the value that this function will return.
get_native_pose(...) from builtins.PyCapsule
get_native_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
get_self_ptr(...) from builtins.PyCapsule
get_self_ptr(*args, **kwargs)
Overloaded function.
 
1. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
 
2. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
get_self_weak_ptr(...) from builtins.PyCapsule
get_self_weak_ptr(*args, **kwargs)
Overloaded function.
 
1. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_const_protocols_moves_Mover_t
 
2. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_protocols_moves_Mover_t
get_type(...) from builtins.PyCapsule
get_type(rosetta.protocols.moves.Mover) -> str
info(...) from builtins.PyCapsule
info(*args, **kwargs)
Overloaded function.
 
1. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t
 
non-const accessor
 
2. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t
 
const accessor
last_proposal_density_ratio(...) from builtins.PyCapsule
last_proposal_density_ratio(rosetta.protocols.moves.Mover) -> float
name(...) from builtins.PyCapsule
name() -> str
register_options(...) from builtins.PyCapsule
register_options(*args, **kwargs)
Overloaded function.
 
1. register_options() -> NoneType
 
Overload this static method if you access options within the mover.
 
 
 These options will end up in -help of your application if users of this mover call register_options.
 Do this recursively!
 If you use movers within your mover, call their register_options in your register_options() method.
 
2. register_options() -> NoneType
 
3. register_options() -> NoneType
 
4. register_options() -> NoneType
 
5. register_options() -> NoneType
 
6. register_options() -> NoneType
 
7. register_options() -> NoneType
 
8. register_options() -> NoneType
 
9. register_options() -> NoneType
 
Associates relevant options with the AntibodyModeler class
 
10. register_options() -> NoneType
 
Associates relevant options with the AntibodyModeler class
 
11. register_options() -> NoneType
 
Associates relevant options with the SnugDock class
 
12. register_options() -> NoneType
 
Associates relevant options with the SnugDockProtocol class
 
13. register_options() -> NoneType
 
Register the options used by this mover with the global options
 system.
 
14. register_options() -> NoneType
 
15. register_options() -> NoneType
 
Associate relevant options with the TemperedDocking class.
 
16. register_options() -> NoneType
 
17. register_options() -> NoneType
 
18. register_options() -> NoneType
 
Associates relevant options with the TemperedDocking class.
 
19. register_options() -> NoneType
 
20. register_options() -> NoneType
 
Associates relevant options with the ConstraintSetMover class
 
21. register_options() -> NoneType
 
22. register_options() -> NoneType
 
Associates relevant options with the DockingInitialPerturbation class
 
23. register_options() -> NoneType
 
Associates relevant options with the DockingProtocol class
 
24. register_options() -> NoneType
 
Associates relevant options with the TemperedDocking class
 
25. register_options() -> NoneType
 
26. register_options() -> NoneType
 
27. register_options() -> NoneType
 
28. register_options() -> NoneType
 
register options
 
29. register_options() -> NoneType
 
30. register_options() -> NoneType
 
Registers applicable options
 
31. register_options() -> NoneType
 
Register options with the option system.
 
32. register_options() -> NoneType
 
33. register_options() -> NoneType
 
34. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
35. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycleContainer class
 
36. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
37. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
38. register_options() -> NoneType
 
39. register_options() -> NoneType
 
Register options with the option system.
 
40. register_options() -> NoneType
reinitialize_for_each_job(...) from builtins.PyCapsule
reinitialize_for_each_job(rosetta.protocols.moves.Mover) -> bool
 
Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on
 each use.
reinitialize_for_new_input(...) from builtins.PyCapsule
reinitialize_for_new_input(rosetta.protocols.moves.Mover) -> bool
 
Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input
 pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for
 that one input pose).
reset_status(...) from builtins.PyCapsule
reset_status(rosetta.protocols.moves.Mover) -> NoneType
 
resets status to SUCCESS, meant to be used before an apply().  The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.
set_current_job(...) from builtins.PyCapsule
set_current_job(self : rosetta.protocols.moves.Mover, job : protocols::jobdist::BasicJob) -> NoneType
 
////////////////////////////end Job Distributor interface////////////////////////////////////////
set_current_tag(...) from builtins.PyCapsule
set_current_tag(self : rosetta.protocols.moves.Mover, new_tag : str) -> NoneType
set_input_pose(...) from builtins.PyCapsule
set_input_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
setter for poses contained for rms
set_native_pose(...) from builtins.PyCapsule
set_native_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
setter for native poses contained for rms ---- we should get rid of this method? it is widely used, but a bit unsafe
set_type(...) from builtins.PyCapsule
set_type(self : rosetta.protocols.moves.Mover, setting : str) -> NoneType
test_move(...) from builtins.PyCapsule
test_move(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
: Unit test support function.  Apply one move to a given pose.
      Allows extra test specific functions to be called before applying
type(...) from builtins.PyCapsule
type(*args, **kwargs)
Overloaded function.
 
1. type(rosetta.protocols.moves.Mover) -> str
 
2. type(self : rosetta.protocols.moves.Mover, type_in : str) -> NoneType

 
class SealFoldTreeMoverCreator(rosetta.protocols.moves.MoverCreator)
    
Method resolution order:
SealFoldTreeMoverCreator
rosetta.protocols.moves.MoverCreator
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(handle) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.denovo_design.movers.SealFoldTreeMoverCreator,  : rosetta.protocols.denovo_design.movers.SealFoldTreeMoverCreator) -> rosetta.protocols.denovo_design.movers.SealFoldTreeMoverCreator
create_mover(...) from builtins.PyCapsule
create_mover(rosetta.protocols.denovo_design.movers.SealFoldTreeMoverCreator) -> rosetta.protocols.moves.Mover
keyname(...) from builtins.PyCapsule
keyname(rosetta.protocols.denovo_design.movers.SealFoldTreeMoverCreator) -> str

 
class SetResidueAliasMover(rosetta.protocols.moves.Mover)
    Sets a residue alias in the StructureData
 
 
Method resolution order:
SetResidueAliasMover
rosetta.protocols.moves.Mover
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(handle) -> NoneType
 
2. __init__(handle, rosetta.protocols.denovo_design.movers.SetResidueAliasMover) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
__str__(...) from builtins.PyCapsule
__str__(rosetta.protocols.denovo_design.movers.SetResidueAliasMover) -> str
apply(...) from builtins.PyCapsule
apply(self : rosetta.protocols.denovo_design.movers.SetResidueAliasMover, pose : rosetta.core.pose.Pose) -> NoneType
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.denovo_design.movers.SetResidueAliasMover,  : rosetta.protocols.denovo_design.movers.SetResidueAliasMover) -> rosetta.protocols.denovo_design.movers.SetResidueAliasMover
class_name(...) from builtins.PyCapsule
class_name() -> str
clone(...) from builtins.PyCapsule
clone(rosetta.protocols.denovo_design.movers.SetResidueAliasMover) -> rosetta.protocols.moves.Mover
 
required in the context of the parser/scripting scheme
fresh_instance(...) from builtins.PyCapsule
fresh_instance(rosetta.protocols.denovo_design.movers.SetResidueAliasMover) -> rosetta.protocols.moves.Mover
 
required in the context of the parser/scripting scheme
get_name(...) from builtins.PyCapsule
get_name(rosetta.protocols.denovo_design.movers.SetResidueAliasMover) -> str

Methods inherited from rosetta.protocols.moves.Mover:
clear_info(...) from builtins.PyCapsule
clear_info(rosetta.protocols.moves.Mover) -> NoneType
 
Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.
 
 
 clear_info is called by jd2 before calling apply
create(...) from builtins.PyCapsule
create(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
get_additional_output(...) from builtins.PyCapsule
get_additional_output(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
 
fpd
 
 
 Mechanism by which a mover may return multiple output poses from a single input pose.
get_current_job(...) from builtins.PyCapsule
get_current_job(rosetta.protocols.moves.Mover) -> protocols::jobdist::BasicJob
get_current_tag(...) from builtins.PyCapsule
get_current_tag(rosetta.protocols.moves.Mover) -> str
 
A tag is a unique identifier used to identify structures produced
 by this Moverget_current_tag() returns the tag, and set_current_tag( std::string tag )
 sets the tag.  This functionality is not intended for use with the 2008 job distributor.
get_input_pose(...) from builtins.PyCapsule
get_input_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
get_last_move_status(...) from builtins.PyCapsule
get_last_move_status(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.MoverStatus
 
returns status after an apply().  The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say "that run was no good, skip it" then use the protected last_move_status(MoverStatus) to change the value that this function will return.
get_native_pose(...) from builtins.PyCapsule
get_native_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose
get_self_ptr(...) from builtins.PyCapsule
get_self_ptr(*args, **kwargs)
Overloaded function.
 
1. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
 
2. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover
get_self_weak_ptr(...) from builtins.PyCapsule
get_self_weak_ptr(*args, **kwargs)
Overloaded function.
 
1. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_const_protocols_moves_Mover_t
 
2. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_protocols_moves_Mover_t
get_type(...) from builtins.PyCapsule
get_type(rosetta.protocols.moves.Mover) -> str
info(...) from builtins.PyCapsule
info(*args, **kwargs)
Overloaded function.
 
1. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t
 
non-const accessor
 
2. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t
 
const accessor
last_proposal_density_ratio(...) from builtins.PyCapsule
last_proposal_density_ratio(rosetta.protocols.moves.Mover) -> float
name(...) from builtins.PyCapsule
name() -> str
register_options(...) from builtins.PyCapsule
register_options(*args, **kwargs)
Overloaded function.
 
1. register_options() -> NoneType
 
Overload this static method if you access options within the mover.
 
 
 These options will end up in -help of your application if users of this mover call register_options.
 Do this recursively!
 If you use movers within your mover, call their register_options in your register_options() method.
 
2. register_options() -> NoneType
 
3. register_options() -> NoneType
 
4. register_options() -> NoneType
 
5. register_options() -> NoneType
 
6. register_options() -> NoneType
 
7. register_options() -> NoneType
 
8. register_options() -> NoneType
 
9. register_options() -> NoneType
 
Associates relevant options with the AntibodyModeler class
 
10. register_options() -> NoneType
 
Associates relevant options with the AntibodyModeler class
 
11. register_options() -> NoneType
 
Associates relevant options with the SnugDock class
 
12. register_options() -> NoneType
 
Associates relevant options with the SnugDockProtocol class
 
13. register_options() -> NoneType
 
Register the options used by this mover with the global options
 system.
 
14. register_options() -> NoneType
 
15. register_options() -> NoneType
 
Associate relevant options with the TemperedDocking class.
 
16. register_options() -> NoneType
 
17. register_options() -> NoneType
 
18. register_options() -> NoneType
 
Associates relevant options with the TemperedDocking class.
 
19. register_options() -> NoneType
 
20. register_options() -> NoneType
 
Associates relevant options with the ConstraintSetMover class
 
21. register_options() -> NoneType
 
22. register_options() -> NoneType
 
Associates relevant options with the DockingInitialPerturbation class
 
23. register_options() -> NoneType
 
Associates relevant options with the DockingProtocol class
 
24. register_options() -> NoneType
 
Associates relevant options with the TemperedDocking class
 
25. register_options() -> NoneType
 
26. register_options() -> NoneType
 
27. register_options() -> NoneType
 
28. register_options() -> NoneType
 
register options
 
29. register_options() -> NoneType
 
30. register_options() -> NoneType
 
Registers applicable options
 
31. register_options() -> NoneType
 
Register options with the option system.
 
32. register_options() -> NoneType
 
33. register_options() -> NoneType
 
34. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
35. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycleContainer class
 
36. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
37. register_options() -> NoneType
 
Associates relevant options with the LoopRefineInnerCycle class
 
38. register_options() -> NoneType
 
39. register_options() -> NoneType
 
Register options with the option system.
 
40. register_options() -> NoneType
reinitialize_for_each_job(...) from builtins.PyCapsule
reinitialize_for_each_job(rosetta.protocols.moves.Mover) -> bool
 
Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on
 each use.
reinitialize_for_new_input(...) from builtins.PyCapsule
reinitialize_for_new_input(rosetta.protocols.moves.Mover) -> bool
 
Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input
 pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for
 that one input pose).
reset_status(...) from builtins.PyCapsule
reset_status(rosetta.protocols.moves.Mover) -> NoneType
 
resets status to SUCCESS, meant to be used before an apply().  The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.
set_current_job(...) from builtins.PyCapsule
set_current_job(self : rosetta.protocols.moves.Mover, job : protocols::jobdist::BasicJob) -> NoneType
 
////////////////////////////end Job Distributor interface////////////////////////////////////////
set_current_tag(...) from builtins.PyCapsule
set_current_tag(self : rosetta.protocols.moves.Mover, new_tag : str) -> NoneType
set_input_pose(...) from builtins.PyCapsule
set_input_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
setter for poses contained for rms
set_native_pose(...) from builtins.PyCapsule
set_native_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
setter for native poses contained for rms ---- we should get rid of this method? it is widely used, but a bit unsafe
set_type(...) from builtins.PyCapsule
set_type(self : rosetta.protocols.moves.Mover, setting : str) -> NoneType
test_move(...) from builtins.PyCapsule
test_move(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType
 
: Unit test support function.  Apply one move to a given pose.
      Allows extra test specific functions to be called before applying
type(...) from builtins.PyCapsule
type(*args, **kwargs)
Overloaded function.
 
1. type(rosetta.protocols.moves.Mover) -> str
 
2. type(self : rosetta.protocols.moves.Mover, type_in : str) -> NoneType

 
class SetResidueAliasMoverCreator(rosetta.protocols.moves.MoverCreator)
    
Method resolution order:
SetResidueAliasMoverCreator
rosetta.protocols.moves.MoverCreator
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(handle) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.denovo_design.movers.SetResidueAliasMoverCreator,  : rosetta.protocols.denovo_design.movers.SetResidueAliasMoverCreator) -> rosetta.protocols.denovo_design.movers.SetResidueAliasMoverCreator
create_mover(...) from builtins.PyCapsule
create_mover(rosetta.protocols.denovo_design.movers.SetResidueAliasMoverCreator) -> rosetta.protocols.moves.Mover
keyname(...) from builtins.PyCapsule
keyname(rosetta.protocols.denovo_design.movers.SetResidueAliasMoverCreator) -> str

 
Functions
       
add_overlap_to_loops(...) method of builtins.PyCapsule instance
add_overlap_to_loops(loops : rosetta.protocols.loops.Loops, overlap : int, pose : rosetta.core.pose.Pose) -> rosetta.core.select.residue_selector.ResidueVector
 
goes through loops and adds overlapping residues
calc_dihedral(...) method of builtins.PyCapsule instance
calc_dihedral(p1 : rosetta.numeric.xyzVector_double_t, p2 : rosetta.numeric.xyzVector_double_t, p3 : rosetta.numeric.xyzVector_double_t, p4 : rosetta.numeric.xyzVector_double_t) -> float