Bindings for protocols::denovo_design::architects namespace

Classes
		builtins.object DeNovoArchitectCreator BetaSheetArchitectCreator CompoundArchitectCreator HelixArchitectCreator PoseArchitectCreator StrandArchitectCreator PairedStrandNames SecStructInfo StrandOrientation StructureArchitect DeNovoArchitect BetaSheetArchitect CompoundArchitect DeNovoMotifArchitect HelixArchitect PoseArchitect StrandArchitect rosetta.utility.SingletonBase_protocols_denovo_design_architects_DeNovoArchitectFactory_t(builtins.object) DeNovoArchitectFactory rosetta.utility.excn.EXCN_Base(builtins.object) EXCN_PreFilterFailed   class BetaSheetArchitect(DeNovoArchitect)     Architect that creates a beta sheet     Method resolution order: BetaSheetArchitect DeNovoArchitect StructureArchitect builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, id_value : str) -> NoneType   2. __init__(handle, rosetta.protocols.denovo_design.architects.BetaSheetArchitect) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.denovo_design.architects.BetaSheetArchitect,  : rosetta.protocols.denovo_design.architects.BetaSheetArchitect) -> rosetta.protocols.denovo_design.architects.BetaSheetArchitect class_name(...) from builtins.PyCapsule class_name() -> str clone(...) from builtins.PyCapsule clone(rosetta.protocols.denovo_design.architects.BetaSheetArchitect) -> rosetta.protocols.denovo_design.architects.DeNovoArchitect design(...) from builtins.PyCapsule design(self : rosetta.protocols.denovo_design.architects.BetaSheetArchitect, pose : rosetta.core.pose.Pose, random : float) -> protocols::denovo_design::components::StructureData retrieve_lengths(...) from builtins.PyCapsule retrieve_lengths(self : rosetta.protocols.denovo_design.architects.BetaSheetArchitect, perm : protocols::denovo_design::components::StructureData) -> rosetta.utility.vector1_unsigned_long retrieve_orientations(...) from builtins.PyCapsule retrieve_orientations(self : rosetta.protocols.denovo_design.architects.BetaSheetArchitect, perm : protocols::denovo_design::components::StructureData) -> rosetta.utility.vector1_protocols_denovo_design_architects_StrandOrientation retrieve_register_shifts(...) from builtins.PyCapsule retrieve_register_shifts(self : rosetta.protocols.denovo_design.architects.BetaSheetArchitect, perm : protocols::denovo_design::components::StructureData) -> rosetta.utility.vector1_long type(...) from builtins.PyCapsule type(rosetta.protocols.denovo_design.architects.BetaSheetArchitect) -> str Methods inherited from DeNovoArchitect: apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.denovo_design.architects.DeNovoArchitect, pose : rosetta.core.pose.Pose) -> protocols::denovo_design::components::StructureData Methods inherited from StructureArchitect: id(...) from builtins.PyCapsule id(rosetta.protocols.denovo_design.architects.StructureArchitect) -> str parse_my_tag(...) from builtins.PyCapsule parse_my_tag(self : rosetta.protocols.denovo_design.architects.StructureArchitect, tag : rosetta.utility.tag.Tag, data : rosetta.basic.datacache.DataMap) -> NoneType set_id(...) from builtins.PyCapsule set_id(self : rosetta.protocols.denovo_design.architects.StructureArchitect, new_id : str) -> NoneType   class BetaSheetArchitectCreator(DeNovoArchitectCreator)       Method resolution order: BetaSheetArchitectCreator DeNovoArchitectCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.denovo_design.architects.BetaSheetArchitectCreator,  : rosetta.protocols.denovo_design.architects.BetaSheetArchitectCreator) -> rosetta.protocols.denovo_design.architects.BetaSheetArchitectCreator create_architect(...) from builtins.PyCapsule create_architect(self : rosetta.protocols.denovo_design.architects.BetaSheetArchitectCreator, architect_id : str) -> rosetta.protocols.denovo_design.architects.DeNovoArchitect   Instantiate a particular DeNovoArchitect keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.denovo_design.architects.BetaSheetArchitectCreator) -> str   Return a string that will be used to instantiate the particular DeNovoArchitect   class CompoundArchitect(DeNovoArchitect)     Architect that creates a StructureData using multiple architects     Method resolution order: CompoundArchitect DeNovoArchitect StructureArchitect builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, id_value : str) -> NoneType   2. __init__(handle, rosetta.protocols.denovo_design.architects.CompoundArchitect) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. add_architect(...) from builtins.PyCapsule add_architect(self : rosetta.protocols.denovo_design.architects.CompoundArchitect, architect : rosetta.protocols.denovo_design.architects.DeNovoArchitect) -> NoneType add_connection(...) from builtins.PyCapsule add_connection(self : rosetta.protocols.denovo_design.architects.CompoundArchitect, connection : protocols::denovo_design::connection::ConnectionArchitect) -> NoneType assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.denovo_design.architects.CompoundArchitect,  : rosetta.protocols.denovo_design.architects.CompoundArchitect) -> rosetta.protocols.denovo_design.architects.CompoundArchitect class_name(...) from builtins.PyCapsule class_name() -> str clone(...) from builtins.PyCapsule clone(rosetta.protocols.denovo_design.architects.CompoundArchitect) -> rosetta.protocols.denovo_design.architects.DeNovoArchitect design(...) from builtins.PyCapsule design(self : rosetta.protocols.denovo_design.architects.CompoundArchitect, pose : rosetta.core.pose.Pose, random : float) -> protocols::denovo_design::components::StructureData type(...) from builtins.PyCapsule type(rosetta.protocols.denovo_design.architects.CompoundArchitect) -> str Methods inherited from DeNovoArchitect: apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.denovo_design.architects.DeNovoArchitect, pose : rosetta.core.pose.Pose) -> protocols::denovo_design::components::StructureData Methods inherited from StructureArchitect: id(...) from builtins.PyCapsule id(rosetta.protocols.denovo_design.architects.StructureArchitect) -> str parse_my_tag(...) from builtins.PyCapsule parse_my_tag(self : rosetta.protocols.denovo_design.architects.StructureArchitect, tag : rosetta.utility.tag.Tag, data : rosetta.basic.datacache.DataMap) -> NoneType set_id(...) from builtins.PyCapsule set_id(self : rosetta.protocols.denovo_design.architects.StructureArchitect, new_id : str) -> NoneType   class CompoundArchitectCreator(DeNovoArchitectCreator)       Method resolution order: CompoundArchitectCreator DeNovoArchitectCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.denovo_design.architects.CompoundArchitectCreator,  : rosetta.protocols.denovo_design.architects.CompoundArchitectCreator) -> rosetta.protocols.denovo_design.architects.CompoundArchitectCreator create_architect(...) from builtins.PyCapsule create_architect(self : rosetta.protocols.denovo_design.architects.CompoundArchitectCreator, architect_id : str) -> rosetta.protocols.denovo_design.architects.DeNovoArchitect   Instantiate a particular DeNovoArchitect keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.denovo_design.architects.CompoundArchitectCreator) -> str   Return a string that will be used to instantiate the particular DeNovoArchitect   class DeNovoArchitect(StructureArchitect)     for planning ideal pieces of structures     Derived classes must still implment their own parse_tag() and type() functions.          This base handles the apply() virtual, though. In parse_tag(), derived classes          MUST be sure to set the motif list.     Method resolution order: DeNovoArchitect StructureArchitect builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : rosetta.protocols.denovo_design.architects.DeNovoArchitect, id : str) -> NoneType   2. __init__(rosetta.protocols.denovo_design.architects.DeNovoArchitect, rosetta.protocols.denovo_design.architects.DeNovoArchitect) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.denovo_design.architects.DeNovoArchitect, pose : rosetta.core.pose.Pose) -> protocols::denovo_design::components::StructureData assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.denovo_design.architects.DeNovoArchitect,  : rosetta.protocols.denovo_design.architects.DeNovoArchitect) -> rosetta.protocols.denovo_design.architects.DeNovoArchitect clone(...) from builtins.PyCapsule clone(rosetta.protocols.denovo_design.architects.DeNovoArchitect) -> rosetta.protocols.denovo_design.architects.DeNovoArchitect design(...) from builtins.PyCapsule design(self : rosetta.protocols.denovo_design.architects.DeNovoArchitect, pose : rosetta.core.pose.Pose, random : float) -> protocols::denovo_design::components::StructureData type(...) from builtins.PyCapsule type(rosetta.protocols.denovo_design.architects.DeNovoArchitect) -> str Methods inherited from StructureArchitect: id(...) from builtins.PyCapsule id(rosetta.protocols.denovo_design.architects.StructureArchitect) -> str parse_my_tag(...) from builtins.PyCapsule parse_my_tag(self : rosetta.protocols.denovo_design.architects.StructureArchitect, tag : rosetta.utility.tag.Tag, data : rosetta.basic.datacache.DataMap) -> NoneType set_id(...) from builtins.PyCapsule set_id(self : rosetta.protocols.denovo_design.architects.StructureArchitect, new_id : str) -> NoneType   class DeNovoArchitectCreator(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(rosetta.protocols.denovo_design.architects.DeNovoArchitectCreator) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.denovo_design.architects.DeNovoArchitectCreator,  : rosetta.protocols.denovo_design.architects.DeNovoArchitectCreator) -> rosetta.protocols.denovo_design.architects.DeNovoArchitectCreator create_architect(...) from builtins.PyCapsule create_architect(self : rosetta.protocols.denovo_design.architects.DeNovoArchitectCreator, architect_id : str) -> rosetta.protocols.denovo_design.architects.DeNovoArchitect   Instantiate a particular DeNovoArchitect keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.denovo_design.architects.DeNovoArchitectCreator) -> str   Return a string that will be used to instantiate the particular DeNovoArchitect   class DeNovoArchitectFactory(rosetta.utility.SingletonBase_protocols_denovo_design_architects_DeNovoArchitectFactory_t)     Creates DeNovo architects     Method resolution order: DeNovoArchitectFactory rosetta.utility.SingletonBase_protocols_denovo_design_architects_DeNovoArchitectFactory_t builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(rosetta.protocols.denovo_design.architects.DeNovoArchitectFactory) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. add_creator(...) from builtins.PyCapsule add_creator(self : rosetta.protocols.denovo_design.architects.DeNovoArchitectFactory, creator : rosetta.protocols.denovo_design.architects.DeNovoArchitectCreator) -> NoneType create_from_tag(...) from builtins.PyCapsule create_from_tag(self : rosetta.protocols.denovo_design.architects.DeNovoArchitectFactory, tag : rosetta.utility.tag.Tag, data : rosetta.basic.datacache.DataMap) -> rosetta.protocols.denovo_design.architects.DeNovoArchitect create_instance(...) from builtins.PyCapsule create_instance(self : rosetta.protocols.denovo_design.architects.DeNovoArchitectFactory, architect_name : str, architect_id : str) -> rosetta.protocols.denovo_design.architects.DeNovoArchitect create_singleton_instance(...) from builtins.PyCapsule create_singleton_instance() -> rosetta.protocols.denovo_design.architects.DeNovoArchitectFactory Methods inherited from rosetta.utility.SingletonBase_protocols_denovo_design_architects_DeNovoArchitectFactory_t: get_instance(...) from builtins.PyCapsule get_instance() -> protocols::denovo_design::architects::DeNovoArchitectFactory   class DeNovoMotifArchitect(DeNovoArchitect)     for planning arbitrary motifs     Method resolution order: DeNovoMotifArchitect DeNovoArchitect StructureArchitect builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, id : str) -> NoneType   2. __init__(handle, rosetta.protocols.denovo_design.architects.DeNovoMotifArchitect) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. architect_name(...) from builtins.PyCapsule architect_name() -> str assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.denovo_design.architects.DeNovoMotifArchitect,  : rosetta.protocols.denovo_design.architects.DeNovoMotifArchitect) -> rosetta.protocols.denovo_design.architects.DeNovoMotifArchitect clone(...) from builtins.PyCapsule clone(rosetta.protocols.denovo_design.architects.DeNovoMotifArchitect) -> rosetta.protocols.denovo_design.architects.DeNovoArchitect design(...) from builtins.PyCapsule design(self : rosetta.protocols.denovo_design.architects.DeNovoMotifArchitect, pose : rosetta.core.pose.Pose, random : float) -> protocols::denovo_design::components::StructureData motifs_begin(...) from builtins.PyCapsule motifs_begin(rosetta.protocols.denovo_design.architects.DeNovoMotifArchitect) -> __gnu_cxx::__normal_iterator<std::shared_ptr<protocols::denovo_design::components::Segment const> const*, std::vector<std::shared_ptr<protocols::denovo_design::components::Segment const>, std::allocator<std::shared_ptr<protocols::denovo_design::components::Segment const> > > > motifs_end(...) from builtins.PyCapsule motifs_end(rosetta.protocols.denovo_design.architects.DeNovoMotifArchitect) -> __gnu_cxx::__normal_iterator<std::shared_ptr<protocols::denovo_design::components::Segment const> const*, std::vector<std::shared_ptr<protocols::denovo_design::components::Segment const>, std::allocator<std::shared_ptr<protocols::denovo_design::components::Segment const> > > > set_motifs(...) from builtins.PyCapsule set_motifs(*args, **kwargs) Overloaded function.   1. set_motifs(self : rosetta.protocols.denovo_design.architects.DeNovoMotifArchitect, motif_str : str) -> NoneType   2. set_motifs(self : rosetta.protocols.denovo_design.architects.DeNovoMotifArchitect, motifs : rosetta.utility.vector1_std_shared_ptr_const_protocols_denovo_design_components_Segment_t) -> NoneType type(...) from builtins.PyCapsule type(rosetta.protocols.denovo_design.architects.DeNovoMotifArchitect) -> str Methods inherited from DeNovoArchitect: apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.denovo_design.architects.DeNovoArchitect, pose : rosetta.core.pose.Pose) -> protocols::denovo_design::components::StructureData Methods inherited from StructureArchitect: id(...) from builtins.PyCapsule id(rosetta.protocols.denovo_design.architects.StructureArchitect) -> str parse_my_tag(...) from builtins.PyCapsule parse_my_tag(self : rosetta.protocols.denovo_design.architects.StructureArchitect, tag : rosetta.utility.tag.Tag, data : rosetta.basic.datacache.DataMap) -> NoneType set_id(...) from builtins.PyCapsule set_id(self : rosetta.protocols.denovo_design.architects.StructureArchitect, new_id : str) -> NoneType   class EXCN_PreFilterFailed(rosetta.utility.excn.EXCN_Base)       Method resolution order: EXCN_PreFilterFailed rosetta.utility.excn.EXCN_Base builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, msg : str) -> NoneType   2. __init__(handle, rosetta.protocols.denovo_design.architects.EXCN_PreFilterFailed) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. Methods inherited from rosetta.utility.excn.EXCN_Base: __str__(...) from builtins.PyCapsule __str__(rosetta.utility.excn.EXCN_Base) -> str assign(...) from builtins.PyCapsule assign(self : rosetta.utility.excn.EXCN_Base,  : rosetta.utility.excn.EXCN_Base) -> rosetta.utility.excn.EXCN_Base msg(...) from builtins.PyCapsule msg(rosetta.utility.excn.EXCN_Base) -> str   class HelixArchitect(DeNovoArchitect)     Architect for helices     Method resolution order: HelixArchitect DeNovoArchitect StructureArchitect builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, id_value : str) -> NoneType   2. __init__(handle, rosetta.protocols.denovo_design.architects.HelixArchitect) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.denovo_design.architects.HelixArchitect,  : rosetta.protocols.denovo_design.architects.HelixArchitect) -> rosetta.protocols.denovo_design.architects.HelixArchitect class_name(...) from builtins.PyCapsule class_name() -> str clone(...) from builtins.PyCapsule clone(rosetta.protocols.denovo_design.architects.HelixArchitect) -> rosetta.protocols.denovo_design.architects.DeNovoArchitect design(...) from builtins.PyCapsule design(self : rosetta.protocols.denovo_design.architects.HelixArchitect, pose : rosetta.core.pose.Pose, random : float) -> protocols::denovo_design::components::StructureData set_lengths(...) from builtins.PyCapsule set_lengths(*args, **kwargs) Overloaded function.   1. set_lengths(self : rosetta.protocols.denovo_design.architects.HelixArchitect, lengths_str : str) -> NoneType   2. set_lengths(self : rosetta.protocols.denovo_design.architects.HelixArchitect, lengths : rosetta.utility.vector1_unsigned_long) -> NoneType type(...) from builtins.PyCapsule type(rosetta.protocols.denovo_design.architects.HelixArchitect) -> str Methods inherited from DeNovoArchitect: apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.denovo_design.architects.DeNovoArchitect, pose : rosetta.core.pose.Pose) -> protocols::denovo_design::components::StructureData Methods inherited from StructureArchitect: id(...) from builtins.PyCapsule id(rosetta.protocols.denovo_design.architects.StructureArchitect) -> str parse_my_tag(...) from builtins.PyCapsule parse_my_tag(self : rosetta.protocols.denovo_design.architects.StructureArchitect, tag : rosetta.utility.tag.Tag, data : rosetta.basic.datacache.DataMap) -> NoneType set_id(...) from builtins.PyCapsule set_id(self : rosetta.protocols.denovo_design.architects.StructureArchitect, new_id : str) -> NoneType   class HelixArchitectCreator(DeNovoArchitectCreator)       Method resolution order: HelixArchitectCreator DeNovoArchitectCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.denovo_design.architects.HelixArchitectCreator,  : rosetta.protocols.denovo_design.architects.HelixArchitectCreator) -> rosetta.protocols.denovo_design.architects.HelixArchitectCreator create_architect(...) from builtins.PyCapsule create_architect(self : rosetta.protocols.denovo_design.architects.HelixArchitectCreator, architect_id : str) -> rosetta.protocols.denovo_design.architects.DeNovoArchitect   Instantiate a particular DeNovoArchitect keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.denovo_design.architects.HelixArchitectCreator) -> str   Return a string that will be used to instantiate the particular DeNovoArchitect   class PairedStrandNames(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : rosetta.protocols.denovo_design.architects.PairedStrandNames, seg1 : str, seg2 : str) -> NoneType   2. __init__(self : rosetta.protocols.denovo_design.architects.PairedStrandNames,  : rosetta.protocols.denovo_design.architects.PairedStrandNames) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. __str__(...) from builtins.PyCapsule __str__(rosetta.protocols.denovo_design.architects.PairedStrandNames) -> str assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.denovo_design.architects.PairedStrandNames,  : rosetta.protocols.denovo_design.architects.PairedStrandNames) -> rosetta.protocols.denovo_design.architects.PairedStrandNames Data descriptors defined here: segment1 segment2   class PoseArchitect(DeNovoArchitect)     Design segments based on a pose     Method resolution order: PoseArchitect DeNovoArchitect StructureArchitect builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, id_value : str) -> NoneType   2. __init__(handle, rosetta.protocols.denovo_design.architects.PoseArchitect) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. architect_name(...) from builtins.PyCapsule architect_name() -> str assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.denovo_design.architects.PoseArchitect,  : rosetta.protocols.denovo_design.architects.PoseArchitect) -> rosetta.protocols.denovo_design.architects.PoseArchitect clone(...) from builtins.PyCapsule clone(rosetta.protocols.denovo_design.architects.PoseArchitect) -> rosetta.protocols.denovo_design.architects.DeNovoArchitect design(...) from builtins.PyCapsule design(self : rosetta.protocols.denovo_design.architects.PoseArchitect, pose : rosetta.core.pose.Pose, random : float) -> protocols::denovo_design::components::StructureData type(...) from builtins.PyCapsule type(rosetta.protocols.denovo_design.architects.PoseArchitect) -> str Methods inherited from DeNovoArchitect: apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.denovo_design.architects.DeNovoArchitect, pose : rosetta.core.pose.Pose) -> protocols::denovo_design::components::StructureData Methods inherited from StructureArchitect: id(...) from builtins.PyCapsule id(rosetta.protocols.denovo_design.architects.StructureArchitect) -> str parse_my_tag(...) from builtins.PyCapsule parse_my_tag(self : rosetta.protocols.denovo_design.architects.StructureArchitect, tag : rosetta.utility.tag.Tag, data : rosetta.basic.datacache.DataMap) -> NoneType set_id(...) from builtins.PyCapsule set_id(self : rosetta.protocols.denovo_design.architects.StructureArchitect, new_id : str) -> NoneType   class PoseArchitectCreator(DeNovoArchitectCreator)       Method resolution order: PoseArchitectCreator DeNovoArchitectCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.denovo_design.architects.PoseArchitectCreator,  : rosetta.protocols.denovo_design.architects.PoseArchitectCreator) -> rosetta.protocols.denovo_design.architects.PoseArchitectCreator create_architect(...) from builtins.PyCapsule create_architect(self : rosetta.protocols.denovo_design.architects.PoseArchitectCreator, architect_id : str) -> rosetta.protocols.denovo_design.architects.DeNovoArchitect   Instantiate a particular DeNovoArchitect keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.denovo_design.architects.PoseArchitectCreator) -> str   Return a string that will be used to instantiate the particular DeNovoArchitect   class SecStructInfo(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.protocols.denovo_design.architects.SecStructInfo) -> NoneType   2. __init__(self : rosetta.protocols.denovo_design.architects.SecStructInfo,  : rosetta.protocols.denovo_design.architects.SecStructInfo) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.denovo_design.architects.SecStructInfo,  : rosetta.protocols.denovo_design.architects.SecStructInfo) -> rosetta.protocols.denovo_design.architects.SecStructInfo Data descriptors defined here: abego ss   class StrandArchitect(DeNovoArchitect)     Architect that creates a beta strand     Method resolution order: StrandArchitect DeNovoArchitect StructureArchitect builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, id_value : str) -> NoneType   2. __init__(handle, rosetta.protocols.denovo_design.architects.StrandArchitect) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.denovo_design.architects.StrandArchitect,  : rosetta.protocols.denovo_design.architects.StrandArchitect) -> rosetta.protocols.denovo_design.architects.StrandArchitect bulge_keyname(...) from builtins.PyCapsule bulge_keyname() -> str class_name(...) from builtins.PyCapsule class_name() -> str clone(...) from builtins.PyCapsule clone(rosetta.protocols.denovo_design.architects.StrandArchitect) -> rosetta.protocols.denovo_design.architects.DeNovoArchitect design(...) from builtins.PyCapsule design(self : rosetta.protocols.denovo_design.architects.StrandArchitect, pose : rosetta.core.pose.Pose, random : float) -> protocols::denovo_design::components::StructureData enumerate_permutations(...) from builtins.PyCapsule enumerate_permutations(rosetta.protocols.denovo_design.architects.StrandArchitect) -> NoneType int_to_orientation(...) from builtins.PyCapsule int_to_orientation(integer : int) -> rosetta.protocols.denovo_design.architects.StrandOrientation motifs_begin(...) from builtins.PyCapsule motifs_begin(rosetta.protocols.denovo_design.architects.StrandArchitect) -> __gnu_cxx::__normal_iterator<std::shared_ptr<protocols::denovo_design::components::StructureData const> const*, std::vector<std::shared_ptr<protocols::denovo_design::components::StructureData const>, std::allocator<std::shared_ptr<protocols::denovo_design::components::StructureData const> > > > motifs_end(...) from builtins.PyCapsule motifs_end(rosetta.protocols.denovo_design.architects.StrandArchitect) -> __gnu_cxx::__normal_iterator<std::shared_ptr<protocols::denovo_design::components::StructureData const> const*, std::vector<std::shared_ptr<protocols::denovo_design::components::StructureData const>, std::allocator<std::shared_ptr<protocols::denovo_design::components::StructureData const> > > > orientation_keyname(...) from builtins.PyCapsule orientation_keyname() -> str paired_strands_keyname(...) from builtins.PyCapsule paired_strands_keyname() -> str register_shift_keyname(...) from builtins.PyCapsule register_shift_keyname() -> str retrieve_bulge(...) from builtins.PyCapsule retrieve_bulge(self : rosetta.protocols.denovo_design.architects.StrandArchitect, sd : protocols::denovo_design::components::StructureData) -> int retrieve_orientation(...) from builtins.PyCapsule retrieve_orientation(self : rosetta.protocols.denovo_design.architects.StrandArchitect, sd : protocols::denovo_design::components::StructureData) -> rosetta.protocols.denovo_design.architects.StrandOrientation retrieve_paired_strands(...) from builtins.PyCapsule retrieve_paired_strands(self : rosetta.protocols.denovo_design.architects.StrandArchitect, sd : protocols::denovo_design::components::StructureData) -> rosetta.protocols.denovo_design.architects.PairedStrandNames retrieve_register_shift(...) from builtins.PyCapsule retrieve_register_shift(self : rosetta.protocols.denovo_design.architects.StrandArchitect, sd : protocols::denovo_design::components::StructureData) -> int   interaction with StructureData set_bulge(...) from builtins.PyCapsule set_bulge(*args, **kwargs) Overloaded function.   1. set_bulge(self : rosetta.protocols.denovo_design.architects.StrandArchitect, bulges_str : str) -> NoneType   2. set_bulge(self : rosetta.protocols.denovo_design.architects.StrandArchitect, bulges : rosetta.utility.vector1_long) -> NoneType set_length(...) from builtins.PyCapsule set_length(*args, **kwargs) Overloaded function.   1. set_length(self : rosetta.protocols.denovo_design.architects.StrandArchitect, length_str : str) -> NoneType   2. set_length(self : rosetta.protocols.denovo_design.architects.StrandArchitect, lengths_val : rosetta.utility.vector1_unsigned_long) -> NoneType set_orientation(...) from builtins.PyCapsule set_orientation(*args, **kwargs) Overloaded function.   1. set_orientation(self : rosetta.protocols.denovo_design.architects.StrandArchitect, orientations_str : str) -> NoneType   2. set_orientation(self : rosetta.protocols.denovo_design.architects.StrandArchitect, orientations : rosetta.utility.vector1_protocols_denovo_design_architects_StrandOrientation) -> NoneType set_paired_strands(...) from builtins.PyCapsule set_paired_strands(self : rosetta.protocols.denovo_design.architects.StrandArchitect, strands : rosetta.protocols.denovo_design.architects.PairedStrandNames) -> NoneType set_register_shift(...) from builtins.PyCapsule set_register_shift(*args, **kwargs) Overloaded function.   1. set_register_shift(self : rosetta.protocols.denovo_design.architects.StrandArchitect, register_shift_str : str) -> NoneType   2. set_register_shift(self : rosetta.protocols.denovo_design.architects.StrandArchitect, register_shifts : rosetta.utility.vector1_long) -> NoneType store_paired_strands(...) from builtins.PyCapsule store_paired_strands(self : rosetta.protocols.denovo_design.architects.StrandArchitect, sd : protocols::denovo_design::components::StructureData, strands : rosetta.protocols.denovo_design.architects.PairedStrandNames) -> NoneType str_to_paired_strands(...) from builtins.PyCapsule str_to_paired_strands(paired_strand_str : str) -> rosetta.protocols.denovo_design.architects.PairedStrandNames type(...) from builtins.PyCapsule type(rosetta.protocols.denovo_design.architects.StrandArchitect) -> str Methods inherited from DeNovoArchitect: apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.denovo_design.architects.DeNovoArchitect, pose : rosetta.core.pose.Pose) -> protocols::denovo_design::components::StructureData Methods inherited from StructureArchitect: id(...) from builtins.PyCapsule id(rosetta.protocols.denovo_design.architects.StructureArchitect) -> str parse_my_tag(...) from builtins.PyCapsule parse_my_tag(self : rosetta.protocols.denovo_design.architects.StructureArchitect, tag : rosetta.utility.tag.Tag, data : rosetta.basic.datacache.DataMap) -> NoneType set_id(...) from builtins.PyCapsule set_id(self : rosetta.protocols.denovo_design.architects.StructureArchitect, new_id : str) -> NoneType   class StrandArchitectCreator(DeNovoArchitectCreator)       Method resolution order: StrandArchitectCreator DeNovoArchitectCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.denovo_design.architects.StrandArchitectCreator,  : rosetta.protocols.denovo_design.architects.StrandArchitectCreator) -> rosetta.protocols.denovo_design.architects.StrandArchitectCreator create_architect(...) from builtins.PyCapsule create_architect(self : rosetta.protocols.denovo_design.architects.StrandArchitectCreator, architect_id : str) -> rosetta.protocols.denovo_design.architects.DeNovoArchitect   Instantiate a particular DeNovoArchitect keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.denovo_design.architects.StrandArchitectCreator) -> str   Return a string that will be used to instantiate the particular DeNovoArchitect   class StrandOrientation(builtins.object)     Individual strands are oriented pointing either "UP" or "DOWN" If two adjacent strands have the same orientation, they are parallel If two adjacent strands have different orientation, they are antiparallel     Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(rosetta.protocols.denovo_design.architects.StrandOrientation, rosetta.protocols.denovo_design.architects.StrandOrientation) -> bool __hash__(...) from builtins.PyCapsule __hash__(rosetta.protocols.denovo_design.architects.StrandOrientation) -> int __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.protocols.denovo_design.architects.StrandOrientation, int) -> NoneType   2. __init__(rosetta.protocols.denovo_design.architects.StrandOrientation, int) -> NoneType __int__(...) from builtins.PyCapsule __int__(rosetta.protocols.denovo_design.architects.StrandOrientation) -> int __ne__(...) from builtins.PyCapsule __ne__(rosetta.protocols.denovo_design.architects.StrandOrientation, rosetta.protocols.denovo_design.architects.StrandOrientation) -> bool __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. __repr__(...) from builtins.PyCapsule __repr__(rosetta.protocols.denovo_design.architects.StrandOrientation) -> str Data and other attributes defined here: DOWN = StrandOrientation.DOWN ORIENTATIONS_END = StrandOrientation.ORIENTATIONS_END UP = StrandOrientation.UP   class StructureArchitect(builtins.object)     Designs topologies     Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : rosetta.protocols.denovo_design.architects.StructureArchitect, id : str) -> NoneType   2. __init__(rosetta.protocols.denovo_design.architects.StructureArchitect, rosetta.protocols.denovo_design.architects.StructureArchitect) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.denovo_design.architects.StructureArchitect,  : rosetta.protocols.denovo_design.architects.StructureArchitect) -> rosetta.protocols.denovo_design.architects.StructureArchitect id(...) from builtins.PyCapsule id(rosetta.protocols.denovo_design.architects.StructureArchitect) -> str parse_my_tag(...) from builtins.PyCapsule parse_my_tag(self : rosetta.protocols.denovo_design.architects.StructureArchitect, tag : rosetta.utility.tag.Tag, data : rosetta.basic.datacache.DataMap) -> NoneType set_id(...) from builtins.PyCapsule set_id(self : rosetta.protocols.denovo_design.architects.StructureArchitect, new_id : str) -> NoneType type(...) from builtins.PyCapsule type(rosetta.protocols.denovo_design.architects.StructureArchitect) -> str   simply returns the name of this type of architect

Functions
		generate_secstruct_for_length(...) method of builtins.PyCapsule instance generate_secstruct_for_length(ss_char : str, abego : str, len : int) -> rosetta.protocols.denovo_design.architects.SecStructInfo

Data
		DOWN = StrandOrientation.DOWN ORIENTATIONS_END = StrandOrientation.ORIENTATIONS_END UP = StrandOrientation.UP