Bindings for protocols::constraint_generator namespace

Classes
		builtins.object ConstraintGenerator AtomPairConstraintGenerator CoordinateConstraintGenerator DistanceConstraintGenerator HydrogenBondConstraintGenerator TerminiConstraintGenerator ConstraintGeneratorCreator AtomPairConstraintGeneratorCreator CoordinateConstraintGeneratorCreator DistanceConstraintGeneratorCreator HydrogenBondConstraintGeneratorCreator TerminiConstraintGeneratorCreator HydrogenBondingAtom rosetta.protocols.moves.Mover(builtins.object) AddConstraints RemoveConstraints rosetta.protocols.moves.MoverCreator(builtins.object) AddConstraintsCreator RemoveConstraintsCreator rosetta.utility.SingletonBase_protocols_constraint_generator_ConstraintGeneratorFactory_t(builtins.object) ConstraintGeneratorFactory rosetta.utility.SingletonBase_protocols_constraint_generator_ConstraintsManager_t(builtins.object) ConstraintsManager rosetta.utility.SingletonBase_protocols_constraint_generator_HydrogenBondInfo_t(builtins.object) HydrogenBondInfo rosetta.utility.excn.EXCN_Base(builtins.object) EXCN_RemoveCstsFailed   class AddConstraints(rosetta.protocols.moves.Mover)     Adds constraints generated by ConstraintGenerators to a pose     Method resolution order: AddConstraints rosetta.protocols.moves.Mover builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, generators : rosetta.utility.vector1_std_shared_ptr_const_protocols_constraint_generator_ConstraintGenerator_t) -> NoneType   3. __init__(handle, rosetta.protocols.constraint_generator.AddConstraints) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. add_generator(...) from builtins.PyCapsule add_generator(self : rosetta.protocols.constraint_generator.AddConstraints, cst_generator : protocols::constraint_generator::ConstraintGenerator) -> NoneType apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.constraint_generator.AddConstraints, pose : rosetta.core.pose.Pose) -> NoneType assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.constraint_generator.AddConstraints,  : rosetta.protocols.constraint_generator.AddConstraints) -> rosetta.protocols.constraint_generator.AddConstraints class_name(...) from builtins.PyCapsule class_name() -> str clone(...) from builtins.PyCapsule clone(rosetta.protocols.constraint_generator.AddConstraints) -> rosetta.protocols.moves.Mover   required in the context of the parser/scripting scheme fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.constraint_generator.AddConstraints) -> rosetta.protocols.moves.Mover   required in the context of the parser/scripting scheme get_name(...) from builtins.PyCapsule get_name(rosetta.protocols.constraint_generator.AddConstraints) -> str Methods inherited from rosetta.protocols.moves.Mover: clear_info(...) from builtins.PyCapsule clear_info(rosetta.protocols.moves.Mover) -> NoneType   Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.      clear_info is called by jd2 before calling apply create(...) from builtins.PyCapsule create(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover get_additional_output(...) from builtins.PyCapsule get_additional_output(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose   fpd      Mechanism by which a mover may return multiple output poses from a single input pose. get_current_job(...) from builtins.PyCapsule get_current_job(rosetta.protocols.moves.Mover) -> protocols::jobdist::BasicJob get_current_tag(...) from builtins.PyCapsule get_current_tag(rosetta.protocols.moves.Mover) -> str   A tag is a unique identifier used to identify structures produced  by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag )  sets the tag.  This functionality is not intended for use with the 2008 job distributor. get_input_pose(...) from builtins.PyCapsule get_input_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose get_last_move_status(...) from builtins.PyCapsule get_last_move_status(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.MoverStatus   returns status after an apply().  The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say "that run was no good, skip it" then use the protected last_move_status(MoverStatus) to change the value that this function will return. get_native_pose(...) from builtins.PyCapsule get_native_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose get_self_ptr(...) from builtins.PyCapsule get_self_ptr(*args, **kwargs) Overloaded function.   1. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover   2. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover get_self_weak_ptr(...) from builtins.PyCapsule get_self_weak_ptr(*args, **kwargs) Overloaded function.   1. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_const_protocols_moves_Mover_t   2. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_protocols_moves_Mover_t get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.moves.Mover) -> str info(...) from builtins.PyCapsule info(*args, **kwargs) Overloaded function.   1. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t   non-const accessor   2. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t   const accessor last_proposal_density_ratio(...) from builtins.PyCapsule last_proposal_density_ratio(rosetta.protocols.moves.Mover) -> float name(...) from builtins.PyCapsule name() -> str register_options(...) from builtins.PyCapsule register_options(*args, **kwargs) Overloaded function.   1. register_options() -> NoneType   Overload this static method if you access options within the mover.      These options will end up in -help of your application if users of this mover call register_options.  Do this recursively!  If you use movers within your mover, call their register_options in your register_options() method.   2. register_options() -> NoneType   3. register_options() -> NoneType   4. register_options() -> NoneType   5. register_options() -> NoneType   6. register_options() -> NoneType   7. register_options() -> NoneType   8. register_options() -> NoneType   9. register_options() -> NoneType   Associates relevant options with the AntibodyModeler class   10. register_options() -> NoneType   Associates relevant options with the AntibodyModeler class   11. register_options() -> NoneType   Associates relevant options with the SnugDock class   12. register_options() -> NoneType   Associates relevant options with the SnugDockProtocol class   13. register_options() -> NoneType   Register the options used by this mover with the global options  system.   14. register_options() -> NoneType   15. register_options() -> NoneType   Associate relevant options with the TemperedDocking class.   16. register_options() -> NoneType   17. register_options() -> NoneType   18. register_options() -> NoneType   Associates relevant options with the TemperedDocking class.   19. register_options() -> NoneType   20. register_options() -> NoneType   Associates relevant options with the ConstraintSetMover class   21. register_options() -> NoneType   22. register_options() -> NoneType   Associates relevant options with the DockingInitialPerturbation class   23. register_options() -> NoneType   Associates relevant options with the DockingProtocol class   24. register_options() -> NoneType   Associates relevant options with the TemperedDocking class   25. register_options() -> NoneType   26. register_options() -> NoneType   27. register_options() -> NoneType   28. register_options() -> NoneType   register options   29. register_options() -> NoneType   30. register_options() -> NoneType   Registers applicable options   31. register_options() -> NoneType   Register options with the option system.   32. register_options() -> NoneType   33. register_options() -> NoneType   34. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycle class   35. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycleContainer class   36. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycle class   37. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycle class   38. register_options() -> NoneType   39. register_options() -> NoneType   Register options with the option system.   40. register_options() -> NoneType reinitialize_for_each_job(...) from builtins.PyCapsule reinitialize_for_each_job(rosetta.protocols.moves.Mover) -> bool   Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on  each use. reinitialize_for_new_input(...) from builtins.PyCapsule reinitialize_for_new_input(rosetta.protocols.moves.Mover) -> bool   Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input  pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for  that one input pose). reset_status(...) from builtins.PyCapsule reset_status(rosetta.protocols.moves.Mover) -> NoneType   resets status to SUCCESS, meant to be used before an apply().  The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. set_current_job(...) from builtins.PyCapsule set_current_job(self : rosetta.protocols.moves.Mover, job : protocols::jobdist::BasicJob) -> NoneType   ////////////////////////////end Job Distributor interface//////////////////////////////////////// set_current_tag(...) from builtins.PyCapsule set_current_tag(self : rosetta.protocols.moves.Mover, new_tag : str) -> NoneType set_input_pose(...) from builtins.PyCapsule set_input_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType   setter for poses contained for rms set_native_pose(...) from builtins.PyCapsule set_native_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType   setter for native poses contained for rms ---- we should get rid of this method? it is widely used, but a bit unsafe set_type(...) from builtins.PyCapsule set_type(self : rosetta.protocols.moves.Mover, setting : str) -> NoneType test_move(...) from builtins.PyCapsule test_move(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType   : Unit test support function.  Apply one move to a given pose.       Allows extra test specific functions to be called before applying type(...) from builtins.PyCapsule type(*args, **kwargs) Overloaded function.   1. type(rosetta.protocols.moves.Mover) -> str   2. type(self : rosetta.protocols.moves.Mover, type_in : str) -> NoneType   class AddConstraintsCreator(rosetta.protocols.moves.MoverCreator)       Method resolution order: AddConstraintsCreator rosetta.protocols.moves.MoverCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.constraint_generator.AddConstraintsCreator,  : rosetta.protocols.constraint_generator.AddConstraintsCreator) -> rosetta.protocols.constraint_generator.AddConstraintsCreator create_mover(...) from builtins.PyCapsule create_mover(rosetta.protocols.constraint_generator.AddConstraintsCreator) -> rosetta.protocols.moves.Mover keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.constraint_generator.AddConstraintsCreator) -> str   class AtomPairConstraintGenerator(ConstraintGenerator)     Generates atom pair constraints for a set of residues from the current or reference pose     Method resolution order: AtomPairConstraintGenerator ConstraintGenerator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.constraint_generator.AtomPairConstraintGenerator) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.constraint_generator.AtomPairConstraintGenerator, pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.constraint_generator.AtomPairConstraintGenerator,  : rosetta.protocols.constraint_generator.AtomPairConstraintGenerator) -> rosetta.protocols.constraint_generator.AtomPairConstraintGenerator class_name(...) from builtins.PyCapsule class_name() -> str clone(...) from builtins.PyCapsule clone(rosetta.protocols.constraint_generator.AtomPairConstraintGenerator) -> rosetta.protocols.constraint_generator.ConstraintGenerator set_ca_only(...) from builtins.PyCapsule set_ca_only(self : rosetta.protocols.constraint_generator.AtomPairConstraintGenerator, ca_only : bool) -> NoneType set_max_distance(...) from builtins.PyCapsule set_max_distance(self : rosetta.protocols.constraint_generator.AtomPairConstraintGenerator, max_dist : float) -> NoneType set_min_seq_sep(...) from builtins.PyCapsule set_min_seq_sep(self : rosetta.protocols.constraint_generator.AtomPairConstraintGenerator, min_seq_sep : int) -> NoneType set_reference_pose(...) from builtins.PyCapsule set_reference_pose(self : rosetta.protocols.constraint_generator.AtomPairConstraintGenerator, ref_pose : rosetta.core.pose.Pose) -> NoneType set_residue_selector(...) from builtins.PyCapsule set_residue_selector(self : rosetta.protocols.constraint_generator.AtomPairConstraintGenerator, selector : rosetta.core.select.residue_selector.ResidueSelector) -> NoneType set_sd(...) from builtins.PyCapsule set_sd(self : rosetta.protocols.constraint_generator.AtomPairConstraintGenerator, sd : float) -> NoneType set_weight(...) from builtins.PyCapsule set_weight(self : rosetta.protocols.constraint_generator.AtomPairConstraintGenerator, weight : float) -> NoneType Methods inherited from ConstraintGenerator: clear_stored_constraints(...) from builtins.PyCapsule clear_stored_constraints(rosetta.protocols.constraint_generator.ConstraintGenerator) -> NoneType id(...) from builtins.PyCapsule id(rosetta.protocols.constraint_generator.ConstraintGenerator) -> str parse_my_tag(...) from builtins.PyCapsule parse_my_tag(self : rosetta.protocols.constraint_generator.ConstraintGenerator, tag : rosetta.utility.tag.Tag, data : rosetta.basic.datacache.DataMap) -> NoneType   parses XML tag -- calls protected parse_tag() function retrieve_constraints(...) from builtins.PyCapsule retrieve_constraints(rosetta.protocols.constraint_generator.ConstraintGenerator) -> rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t set_id(...) from builtins.PyCapsule set_id(self : rosetta.protocols.constraint_generator.ConstraintGenerator, id : str) -> NoneType store_constraints(...) from builtins.PyCapsule store_constraints(self : rosetta.protocols.constraint_generator.ConstraintGenerator, csts : rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t) -> NoneType   class AtomPairConstraintGeneratorCreator(ConstraintGeneratorCreator)       Method resolution order: AtomPairConstraintGeneratorCreator ConstraintGeneratorCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.constraint_generator.AtomPairConstraintGeneratorCreator,  : rosetta.protocols.constraint_generator.AtomPairConstraintGeneratorCreator) -> rosetta.protocols.constraint_generator.AtomPairConstraintGeneratorCreator create_constraint_generator(...) from builtins.PyCapsule create_constraint_generator(rosetta.protocols.constraint_generator.AtomPairConstraintGeneratorCreator) -> rosetta.protocols.constraint_generator.ConstraintGenerator keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.constraint_generator.AtomPairConstraintGeneratorCreator) -> str   class ConstraintGenerator(builtins.object)     pure virtual base class     Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : rosetta.protocols.constraint_generator.ConstraintGenerator, class_name : str) -> NoneType   2. __init__(rosetta.protocols.constraint_generator.ConstraintGenerator, rosetta.protocols.constraint_generator.ConstraintGenerator) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.constraint_generator.ConstraintGenerator, pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t   generates constraints and adds them to the pose assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.constraint_generator.ConstraintGenerator,  : rosetta.protocols.constraint_generator.ConstraintGenerator) -> rosetta.protocols.constraint_generator.ConstraintGenerator class_name(...) from builtins.PyCapsule class_name(rosetta.protocols.constraint_generator.ConstraintGenerator) -> str clear_stored_constraints(...) from builtins.PyCapsule clear_stored_constraints(rosetta.protocols.constraint_generator.ConstraintGenerator) -> NoneType clone(...) from builtins.PyCapsule clone(rosetta.protocols.constraint_generator.ConstraintGenerator) -> rosetta.protocols.constraint_generator.ConstraintGenerator id(...) from builtins.PyCapsule id(rosetta.protocols.constraint_generator.ConstraintGenerator) -> str parse_my_tag(...) from builtins.PyCapsule parse_my_tag(self : rosetta.protocols.constraint_generator.ConstraintGenerator, tag : rosetta.utility.tag.Tag, data : rosetta.basic.datacache.DataMap) -> NoneType   parses XML tag -- calls protected parse_tag() function retrieve_constraints(...) from builtins.PyCapsule retrieve_constraints(rosetta.protocols.constraint_generator.ConstraintGenerator) -> rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t set_id(...) from builtins.PyCapsule set_id(self : rosetta.protocols.constraint_generator.ConstraintGenerator, id : str) -> NoneType store_constraints(...) from builtins.PyCapsule store_constraints(self : rosetta.protocols.constraint_generator.ConstraintGenerator, csts : rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t) -> NoneType   class ConstraintGeneratorCreator(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(rosetta.protocols.constraint_generator.ConstraintGeneratorCreator) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.constraint_generator.ConstraintGeneratorCreator,  : rosetta.protocols.constraint_generator.ConstraintGeneratorCreator) -> rosetta.protocols.constraint_generator.ConstraintGeneratorCreator create_constraint_generator(...) from builtins.PyCapsule create_constraint_generator(rosetta.protocols.constraint_generator.ConstraintGeneratorCreator) -> rosetta.protocols.constraint_generator.ConstraintGenerator   Instantiate a particular ConstraintGenerator keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.constraint_generator.ConstraintGeneratorCreator) -> str   Return a string that will be used to instantiate the particular ConstraintGenerator   class ConstraintGeneratorFactory(rosetta.utility.SingletonBase_protocols_constraint_generator_ConstraintGeneratorFactory_t)       Method resolution order: ConstraintGeneratorFactory rosetta.utility.SingletonBase_protocols_constraint_generator_ConstraintGeneratorFactory_t builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(rosetta.protocols.constraint_generator.ConstraintGeneratorFactory) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. create_singleton_instance(...) from builtins.PyCapsule create_singleton_instance() -> rosetta.protocols.constraint_generator.ConstraintGeneratorFactory factory_register(...) from builtins.PyCapsule factory_register(self : rosetta.protocols.constraint_generator.ConstraintGeneratorFactory, creator : rosetta.protocols.constraint_generator.ConstraintGeneratorCreator) -> NoneType has_type(...) from builtins.PyCapsule has_type(self : rosetta.protocols.constraint_generator.ConstraintGeneratorFactory, constraint_generator_name : str) -> bool new_constraint_generator(...) from builtins.PyCapsule new_constraint_generator(self : rosetta.protocols.constraint_generator.ConstraintGeneratorFactory, constraint_generator_name : str, tag : rosetta.utility.tag.Tag, datamap : rosetta.basic.datacache.DataMap) -> rosetta.protocols.constraint_generator.ConstraintGenerator Methods inherited from rosetta.utility.SingletonBase_protocols_constraint_generator_ConstraintGeneratorFactory_t: get_instance(...) from builtins.PyCapsule get_instance() -> protocols::constraint_generator::ConstraintGeneratorFactory   class ConstraintsManager(rosetta.utility.SingletonBase_protocols_constraint_generator_ConstraintsManager_t)     Manages lists of constraints generated by ConstraintGenerators     Method resolution order: ConstraintsManager rosetta.utility.SingletonBase_protocols_constraint_generator_ConstraintsManager_t builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(rosetta.protocols.constraint_generator.ConstraintsManager) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. constraints_exist(...) from builtins.PyCapsule constraints_exist(self : rosetta.protocols.constraint_generator.ConstraintsManager, name : str) -> bool create_singleton_instance(...) from builtins.PyCapsule create_singleton_instance() -> rosetta.protocols.constraint_generator.ConstraintsManager remove_constraints(...) from builtins.PyCapsule remove_constraints(self : rosetta.protocols.constraint_generator.ConstraintsManager, name : str) -> NoneType retrieve_constraints(...) from builtins.PyCapsule retrieve_constraints(self : rosetta.protocols.constraint_generator.ConstraintsManager, name : str) -> rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t store_constraints(...) from builtins.PyCapsule store_constraints(self : rosetta.protocols.constraint_generator.ConstraintsManager, name : str, constraints : rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t) -> NoneType Methods inherited from rosetta.utility.SingletonBase_protocols_constraint_generator_ConstraintsManager_t: get_instance(...) from builtins.PyCapsule get_instance() -> protocols::constraint_generator::ConstraintsManager   class CoordinateConstraintGenerator(ConstraintGenerator)     Generates coodinate constraints     Method resolution order: CoordinateConstraintGenerator ConstraintGenerator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.constraint_generator.CoordinateConstraintGenerator) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.constraint_generator.CoordinateConstraintGenerator, pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.constraint_generator.CoordinateConstraintGenerator,  : rosetta.protocols.constraint_generator.CoordinateConstraintGenerator) -> rosetta.protocols.constraint_generator.CoordinateConstraintGenerator class_name(...) from builtins.PyCapsule class_name() -> str clone(...) from builtins.PyCapsule clone(rosetta.protocols.constraint_generator.CoordinateConstraintGenerator) -> rosetta.protocols.constraint_generator.ConstraintGenerator set_ambiguous_hnq(...) from builtins.PyCapsule set_ambiguous_hnq(self : rosetta.protocols.constraint_generator.CoordinateConstraintGenerator, ambiguous_hnq : bool) -> NoneType set_bounded(...) from builtins.PyCapsule set_bounded(self : rosetta.protocols.constraint_generator.CoordinateConstraintGenerator, bounded : bool) -> NoneType set_bounded_width(...) from builtins.PyCapsule set_bounded_width(self : rosetta.protocols.constraint_generator.CoordinateConstraintGenerator, bounded_width : float) -> NoneType set_ca_only(...) from builtins.PyCapsule set_ca_only(self : rosetta.protocols.constraint_generator.CoordinateConstraintGenerator, ca_only : bool) -> NoneType set_reference_pose(...) from builtins.PyCapsule set_reference_pose(self : rosetta.protocols.constraint_generator.CoordinateConstraintGenerator, refpose : rosetta.core.pose.Pose) -> NoneType set_residue_selector(...) from builtins.PyCapsule set_residue_selector(self : rosetta.protocols.constraint_generator.CoordinateConstraintGenerator, selector : rosetta.core.select.residue_selector.ResidueSelector) -> NoneType set_sd(...) from builtins.PyCapsule set_sd(self : rosetta.protocols.constraint_generator.CoordinateConstraintGenerator, sd : float) -> NoneType set_sidechain(...) from builtins.PyCapsule set_sidechain(self : rosetta.protocols.constraint_generator.CoordinateConstraintGenerator, sidechain : bool) -> NoneType Methods inherited from ConstraintGenerator: clear_stored_constraints(...) from builtins.PyCapsule clear_stored_constraints(rosetta.protocols.constraint_generator.ConstraintGenerator) -> NoneType id(...) from builtins.PyCapsule id(rosetta.protocols.constraint_generator.ConstraintGenerator) -> str parse_my_tag(...) from builtins.PyCapsule parse_my_tag(self : rosetta.protocols.constraint_generator.ConstraintGenerator, tag : rosetta.utility.tag.Tag, data : rosetta.basic.datacache.DataMap) -> NoneType   parses XML tag -- calls protected parse_tag() function retrieve_constraints(...) from builtins.PyCapsule retrieve_constraints(rosetta.protocols.constraint_generator.ConstraintGenerator) -> rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t set_id(...) from builtins.PyCapsule set_id(self : rosetta.protocols.constraint_generator.ConstraintGenerator, id : str) -> NoneType store_constraints(...) from builtins.PyCapsule store_constraints(self : rosetta.protocols.constraint_generator.ConstraintGenerator, csts : rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t) -> NoneType   class CoordinateConstraintGeneratorCreator(ConstraintGeneratorCreator)       Method resolution order: CoordinateConstraintGeneratorCreator ConstraintGeneratorCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.constraint_generator.CoordinateConstraintGeneratorCreator,  : rosetta.protocols.constraint_generator.CoordinateConstraintGeneratorCreator) -> rosetta.protocols.constraint_generator.CoordinateConstraintGeneratorCreator create_constraint_generator(...) from builtins.PyCapsule create_constraint_generator(rosetta.protocols.constraint_generator.CoordinateConstraintGeneratorCreator) -> rosetta.protocols.constraint_generator.ConstraintGenerator keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.constraint_generator.CoordinateConstraintGeneratorCreator) -> str   class DistanceConstraintGenerator(ConstraintGenerator)     Generates AtomPair constraints to enforce a given distance between two residue subsets     Method resolution order: DistanceConstraintGenerator ConstraintGenerator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.constraint_generator.DistanceConstraintGenerator) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.constraint_generator.DistanceConstraintGenerator, pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.constraint_generator.DistanceConstraintGenerator,  : rosetta.protocols.constraint_generator.DistanceConstraintGenerator) -> rosetta.protocols.constraint_generator.DistanceConstraintGenerator class_name(...) from builtins.PyCapsule class_name() -> str clone(...) from builtins.PyCapsule clone(rosetta.protocols.constraint_generator.DistanceConstraintGenerator) -> rosetta.protocols.constraint_generator.ConstraintGenerator set_function(...) from builtins.PyCapsule set_function(self : rosetta.protocols.constraint_generator.DistanceConstraintGenerator, func_def_str : str) -> NoneType Methods inherited from ConstraintGenerator: clear_stored_constraints(...) from builtins.PyCapsule clear_stored_constraints(rosetta.protocols.constraint_generator.ConstraintGenerator) -> NoneType id(...) from builtins.PyCapsule id(rosetta.protocols.constraint_generator.ConstraintGenerator) -> str parse_my_tag(...) from builtins.PyCapsule parse_my_tag(self : rosetta.protocols.constraint_generator.ConstraintGenerator, tag : rosetta.utility.tag.Tag, data : rosetta.basic.datacache.DataMap) -> NoneType   parses XML tag -- calls protected parse_tag() function retrieve_constraints(...) from builtins.PyCapsule retrieve_constraints(rosetta.protocols.constraint_generator.ConstraintGenerator) -> rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t set_id(...) from builtins.PyCapsule set_id(self : rosetta.protocols.constraint_generator.ConstraintGenerator, id : str) -> NoneType store_constraints(...) from builtins.PyCapsule store_constraints(self : rosetta.protocols.constraint_generator.ConstraintGenerator, csts : rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t) -> NoneType   class DistanceConstraintGeneratorCreator(ConstraintGeneratorCreator)       Method resolution order: DistanceConstraintGeneratorCreator ConstraintGeneratorCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.constraint_generator.DistanceConstraintGeneratorCreator,  : rosetta.protocols.constraint_generator.DistanceConstraintGeneratorCreator) -> rosetta.protocols.constraint_generator.DistanceConstraintGeneratorCreator create_constraint_generator(...) from builtins.PyCapsule create_constraint_generator(rosetta.protocols.constraint_generator.DistanceConstraintGeneratorCreator) -> rosetta.protocols.constraint_generator.ConstraintGenerator keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.constraint_generator.DistanceConstraintGeneratorCreator) -> str   class EXCN_RemoveCstsFailed(rosetta.utility.excn.EXCN_Base)       Method resolution order: EXCN_RemoveCstsFailed rosetta.utility.excn.EXCN_Base builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.constraint_generator.EXCN_RemoveCstsFailed,  : rosetta.protocols.constraint_generator.EXCN_RemoveCstsFailed) -> rosetta.protocols.constraint_generator.EXCN_RemoveCstsFailed Methods inherited from rosetta.utility.excn.EXCN_Base: __str__(...) from builtins.PyCapsule __str__(rosetta.utility.excn.EXCN_Base) -> str msg(...) from builtins.PyCapsule msg(rosetta.utility.excn.EXCN_Base) -> str   class HydrogenBondConstraintGenerator(ConstraintGenerator)     This constraint generator generates constraints for favoring formation of hydrogen bonds     Method resolution order: HydrogenBondConstraintGenerator ConstraintGenerator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.constraint_generator.HydrogenBondConstraintGenerator) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.constraint_generator.HydrogenBondConstraintGenerator, pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.constraint_generator.HydrogenBondConstraintGenerator,  : rosetta.protocols.constraint_generator.HydrogenBondConstraintGenerator) -> rosetta.protocols.constraint_generator.HydrogenBondConstraintGenerator class_name(...) from builtins.PyCapsule class_name() -> str clone(...) from builtins.PyCapsule clone(rosetta.protocols.constraint_generator.HydrogenBondConstraintGenerator) -> rosetta.protocols.constraint_generator.ConstraintGenerator parse_tag(...) from builtins.PyCapsule parse_tag(self : rosetta.protocols.constraint_generator.HydrogenBondConstraintGenerator, tag : rosetta.utility.tag.Tag, data : rosetta.basic.datacache.DataMap) -> NoneType set_angle1_func(...) from builtins.PyCapsule set_angle1_func(*args, **kwargs) Overloaded function.   1. set_angle1_func(self : rosetta.protocols.constraint_generator.HydrogenBondConstraintGenerator, func_def : str) -> NoneType   2. set_angle1_func(self : rosetta.protocols.constraint_generator.HydrogenBondConstraintGenerator, angle_func : rosetta.core.scoring.func.Func) -> NoneType set_angle2_func(...) from builtins.PyCapsule set_angle2_func(*args, **kwargs) Overloaded function.   1. set_angle2_func(self : rosetta.protocols.constraint_generator.HydrogenBondConstraintGenerator, func_def : str) -> NoneType   2. set_angle2_func(self : rosetta.protocols.constraint_generator.HydrogenBondConstraintGenerator, angle_func : rosetta.core.scoring.func.Func) -> NoneType set_angle_sd(...) from builtins.PyCapsule set_angle_sd(self : rosetta.protocols.constraint_generator.HydrogenBondConstraintGenerator, sd : float) -> NoneType set_atom_pair_func(...) from builtins.PyCapsule set_atom_pair_func(*args, **kwargs) Overloaded function.   1. set_atom_pair_func(self : rosetta.protocols.constraint_generator.HydrogenBondConstraintGenerator, func_def : str) -> NoneType   2. set_atom_pair_func(self : rosetta.protocols.constraint_generator.HydrogenBondConstraintGenerator, atompairfunc : rosetta.core.scoring.func.Func) -> NoneType set_atom_pair_sd(...) from builtins.PyCapsule set_atom_pair_sd(self : rosetta.protocols.constraint_generator.HydrogenBondConstraintGenerator, sd : float) -> NoneType set_atoms1(...) from builtins.PyCapsule set_atoms1(*args, **kwargs) Overloaded function.   1. set_atoms1(self : rosetta.protocols.constraint_generator.HydrogenBondConstraintGenerator, atoms_str : str) -> NoneType   2. set_atoms1(self : rosetta.protocols.constraint_generator.HydrogenBondConstraintGenerator, atoms : rosetta.std.set_std_string_std_less_std_string_std_allocator_std_string_t) -> NoneType set_atoms2(...) from builtins.PyCapsule set_atoms2(*args, **kwargs) Overloaded function.   1. set_atoms2(self : rosetta.protocols.constraint_generator.HydrogenBondConstraintGenerator, atoms_str : str) -> NoneType   2. set_atoms2(self : rosetta.protocols.constraint_generator.HydrogenBondConstraintGenerator, atoms : rosetta.std.set_std_string_std_less_std_string_std_allocator_std_string_t) -> NoneType set_bounded(...) from builtins.PyCapsule set_bounded(self : rosetta.protocols.constraint_generator.HydrogenBondConstraintGenerator, bounded : bool) -> NoneType set_residue_selector1(...) from builtins.PyCapsule set_residue_selector1(self : rosetta.protocols.constraint_generator.HydrogenBondConstraintGenerator, selector : rosetta.core.select.residue_selector.ResidueSelector) -> NoneType set_residue_selector2(...) from builtins.PyCapsule set_residue_selector2(self : rosetta.protocols.constraint_generator.HydrogenBondConstraintGenerator, selector : rosetta.core.select.residue_selector.ResidueSelector) -> NoneType Methods inherited from ConstraintGenerator: clear_stored_constraints(...) from builtins.PyCapsule clear_stored_constraints(rosetta.protocols.constraint_generator.ConstraintGenerator) -> NoneType id(...) from builtins.PyCapsule id(rosetta.protocols.constraint_generator.ConstraintGenerator) -> str parse_my_tag(...) from builtins.PyCapsule parse_my_tag(self : rosetta.protocols.constraint_generator.ConstraintGenerator, tag : rosetta.utility.tag.Tag, data : rosetta.basic.datacache.DataMap) -> NoneType   parses XML tag -- calls protected parse_tag() function retrieve_constraints(...) from builtins.PyCapsule retrieve_constraints(rosetta.protocols.constraint_generator.ConstraintGenerator) -> rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t set_id(...) from builtins.PyCapsule set_id(self : rosetta.protocols.constraint_generator.ConstraintGenerator, id : str) -> NoneType store_constraints(...) from builtins.PyCapsule store_constraints(self : rosetta.protocols.constraint_generator.ConstraintGenerator, csts : rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t) -> NoneType   class HydrogenBondConstraintGeneratorCreator(ConstraintGeneratorCreator)       Method resolution order: HydrogenBondConstraintGeneratorCreator ConstraintGeneratorCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.constraint_generator.HydrogenBondConstraintGeneratorCreator,  : rosetta.protocols.constraint_generator.HydrogenBondConstraintGeneratorCreator) -> rosetta.protocols.constraint_generator.HydrogenBondConstraintGeneratorCreator create_constraint_generator(...) from builtins.PyCapsule create_constraint_generator(rosetta.protocols.constraint_generator.HydrogenBondConstraintGeneratorCreator) -> rosetta.protocols.constraint_generator.ConstraintGenerator keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.constraint_generator.HydrogenBondConstraintGeneratorCreator) -> str   class HydrogenBondInfo(rosetta.utility.SingletonBase_protocols_constraint_generator_HydrogenBondInfo_t)     Database to lookup atoms for hydrogen bonding     Method resolution order: HydrogenBondInfo rosetta.utility.SingletonBase_protocols_constraint_generator_HydrogenBondInfo_t builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(rosetta.protocols.constraint_generator.HydrogenBondInfo) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. create_singleton_instance(...) from builtins.PyCapsule create_singleton_instance() -> rosetta.protocols.constraint_generator.HydrogenBondInfo Methods inherited from rosetta.utility.SingletonBase_protocols_constraint_generator_HydrogenBondInfo_t: get_instance(...) from builtins.PyCapsule get_instance() -> protocols::constraint_generator::HydrogenBondInfo   class HydrogenBondingAtom(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : rosetta.protocols.constraint_generator.HydrogenBondingAtom, atom1 : str, atom2 : str, atom3 : str, ideal_distance : float, ideal_angle : float, ideal_dihedrals : rosetta.std.list_double_std_allocator_double_t) -> NoneType   2. __init__(self : rosetta.protocols.constraint_generator.HydrogenBondingAtom,  : rosetta.protocols.constraint_generator.HydrogenBondingAtom) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. angle(...) from builtins.PyCapsule angle(rosetta.protocols.constraint_generator.HydrogenBondingAtom) -> float assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.constraint_generator.HydrogenBondingAtom,  : rosetta.protocols.constraint_generator.HydrogenBondingAtom) -> rosetta.protocols.constraint_generator.HydrogenBondingAtom atom2(...) from builtins.PyCapsule atom2(rosetta.protocols.constraint_generator.HydrogenBondingAtom) -> str atom3(...) from builtins.PyCapsule atom3(rosetta.protocols.constraint_generator.HydrogenBondingAtom) -> str dihedrals(...) from builtins.PyCapsule dihedrals(rosetta.protocols.constraint_generator.HydrogenBondingAtom) -> rosetta.std.list_double_std_allocator_double_t distance(...) from builtins.PyCapsule distance(rosetta.protocols.constraint_generator.HydrogenBondingAtom) -> float hb_atom(...) from builtins.PyCapsule hb_atom(rosetta.protocols.constraint_generator.HydrogenBondingAtom) -> str   class RemoveConstraints(rosetta.protocols.moves.Mover)     Removes constraints generated by a ConstraintGenerator     Method resolution order: RemoveConstraints rosetta.protocols.moves.Mover builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, generators : rosetta.utility.vector1_std_shared_ptr_const_protocols_constraint_generator_ConstraintGenerator_t) -> NoneType   3. __init__(handle, rosetta.protocols.constraint_generator.RemoveConstraints) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. add_generator(...) from builtins.PyCapsule add_generator(self : rosetta.protocols.constraint_generator.RemoveConstraints, generator : rosetta.protocols.constraint_generator.ConstraintGenerator) -> NoneType apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.constraint_generator.RemoveConstraints, pose : rosetta.core.pose.Pose) -> NoneType assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.constraint_generator.RemoveConstraints,  : rosetta.protocols.constraint_generator.RemoveConstraints) -> rosetta.protocols.constraint_generator.RemoveConstraints class_name(...) from builtins.PyCapsule class_name() -> str clone(...) from builtins.PyCapsule clone(rosetta.protocols.constraint_generator.RemoveConstraints) -> rosetta.protocols.moves.Mover   required in the context of the parser/scripting scheme fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.constraint_generator.RemoveConstraints) -> rosetta.protocols.moves.Mover   required in the context of the parser/scripting scheme get_name(...) from builtins.PyCapsule get_name(rosetta.protocols.constraint_generator.RemoveConstraints) -> str Methods inherited from rosetta.protocols.moves.Mover: clear_info(...) from builtins.PyCapsule clear_info(rosetta.protocols.moves.Mover) -> NoneType   Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.      clear_info is called by jd2 before calling apply create(...) from builtins.PyCapsule create(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover get_additional_output(...) from builtins.PyCapsule get_additional_output(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose   fpd      Mechanism by which a mover may return multiple output poses from a single input pose. get_current_job(...) from builtins.PyCapsule get_current_job(rosetta.protocols.moves.Mover) -> protocols::jobdist::BasicJob get_current_tag(...) from builtins.PyCapsule get_current_tag(rosetta.protocols.moves.Mover) -> str   A tag is a unique identifier used to identify structures produced  by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag )  sets the tag.  This functionality is not intended for use with the 2008 job distributor. get_input_pose(...) from builtins.PyCapsule get_input_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose get_last_move_status(...) from builtins.PyCapsule get_last_move_status(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.MoverStatus   returns status after an apply().  The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say "that run was no good, skip it" then use the protected last_move_status(MoverStatus) to change the value that this function will return. get_native_pose(...) from builtins.PyCapsule get_native_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose get_self_ptr(...) from builtins.PyCapsule get_self_ptr(*args, **kwargs) Overloaded function.   1. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover   2. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover get_self_weak_ptr(...) from builtins.PyCapsule get_self_weak_ptr(*args, **kwargs) Overloaded function.   1. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_const_protocols_moves_Mover_t   2. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_protocols_moves_Mover_t get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.moves.Mover) -> str info(...) from builtins.PyCapsule info(*args, **kwargs) Overloaded function.   1. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t   non-const accessor   2. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t   const accessor last_proposal_density_ratio(...) from builtins.PyCapsule last_proposal_density_ratio(rosetta.protocols.moves.Mover) -> float name(...) from builtins.PyCapsule name() -> str register_options(...) from builtins.PyCapsule register_options(*args, **kwargs) Overloaded function.   1. register_options() -> NoneType   Overload this static method if you access options within the mover.      These options will end up in -help of your application if users of this mover call register_options.  Do this recursively!  If you use movers within your mover, call their register_options in your register_options() method.   2. register_options() -> NoneType   3. register_options() -> NoneType   4. register_options() -> NoneType   5. register_options() -> NoneType   6. register_options() -> NoneType   7. register_options() -> NoneType   8. register_options() -> NoneType   9. register_options() -> NoneType   Associates relevant options with the AntibodyModeler class   10. register_options() -> NoneType   Associates relevant options with the AntibodyModeler class   11. register_options() -> NoneType   Associates relevant options with the SnugDock class   12. register_options() -> NoneType   Associates relevant options with the SnugDockProtocol class   13. register_options() -> NoneType   Register the options used by this mover with the global options  system.   14. register_options() -> NoneType   15. register_options() -> NoneType   Associate relevant options with the TemperedDocking class.   16. register_options() -> NoneType   17. register_options() -> NoneType   18. register_options() -> NoneType   Associates relevant options with the TemperedDocking class.   19. register_options() -> NoneType   20. register_options() -> NoneType   Associates relevant options with the ConstraintSetMover class   21. register_options() -> NoneType   22. register_options() -> NoneType   Associates relevant options with the DockingInitialPerturbation class   23. register_options() -> NoneType   Associates relevant options with the DockingProtocol class   24. register_options() -> NoneType   Associates relevant options with the TemperedDocking class   25. register_options() -> NoneType   26. register_options() -> NoneType   27. register_options() -> NoneType   28. register_options() -> NoneType   register options   29. register_options() -> NoneType   30. register_options() -> NoneType   Registers applicable options   31. register_options() -> NoneType   Register options with the option system.   32. register_options() -> NoneType   33. register_options() -> NoneType   34. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycle class   35. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycleContainer class   36. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycle class   37. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycle class   38. register_options() -> NoneType   39. register_options() -> NoneType   Register options with the option system.   40. register_options() -> NoneType reinitialize_for_each_job(...) from builtins.PyCapsule reinitialize_for_each_job(rosetta.protocols.moves.Mover) -> bool   Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on  each use. reinitialize_for_new_input(...) from builtins.PyCapsule reinitialize_for_new_input(rosetta.protocols.moves.Mover) -> bool   Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input  pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for  that one input pose). reset_status(...) from builtins.PyCapsule reset_status(rosetta.protocols.moves.Mover) -> NoneType   resets status to SUCCESS, meant to be used before an apply().  The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. set_current_job(...) from builtins.PyCapsule set_current_job(self : rosetta.protocols.moves.Mover, job : protocols::jobdist::BasicJob) -> NoneType   ////////////////////////////end Job Distributor interface//////////////////////////////////////// set_current_tag(...) from builtins.PyCapsule set_current_tag(self : rosetta.protocols.moves.Mover, new_tag : str) -> NoneType set_input_pose(...) from builtins.PyCapsule set_input_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType   setter for poses contained for rms set_native_pose(...) from builtins.PyCapsule set_native_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType   setter for native poses contained for rms ---- we should get rid of this method? it is widely used, but a bit unsafe set_type(...) from builtins.PyCapsule set_type(self : rosetta.protocols.moves.Mover, setting : str) -> NoneType test_move(...) from builtins.PyCapsule test_move(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType   : Unit test support function.  Apply one move to a given pose.       Allows extra test specific functions to be called before applying type(...) from builtins.PyCapsule type(*args, **kwargs) Overloaded function.   1. type(rosetta.protocols.moves.Mover) -> str   2. type(self : rosetta.protocols.moves.Mover, type_in : str) -> NoneType   class RemoveConstraintsCreator(rosetta.protocols.moves.MoverCreator)       Method resolution order: RemoveConstraintsCreator rosetta.protocols.moves.MoverCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.constraint_generator.RemoveConstraintsCreator,  : rosetta.protocols.constraint_generator.RemoveConstraintsCreator) -> rosetta.protocols.constraint_generator.RemoveConstraintsCreator create_mover(...) from builtins.PyCapsule create_mover(rosetta.protocols.constraint_generator.RemoveConstraintsCreator) -> rosetta.protocols.moves.Mover keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.constraint_generator.RemoveConstraintsCreator) -> str   class TerminiConstraintGenerator(ConstraintGenerator)     Generates distance constraints between the upper and lower termini     Method resolution order: TerminiConstraintGenerator ConstraintGenerator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.constraint_generator.TerminiConstraintGenerator) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.constraint_generator.TerminiConstraintGenerator, pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.constraint_generator.TerminiConstraintGenerator,  : rosetta.protocols.constraint_generator.TerminiConstraintGenerator) -> rosetta.protocols.constraint_generator.TerminiConstraintGenerator class_name(...) from builtins.PyCapsule class_name() -> str clone(...) from builtins.PyCapsule clone(rosetta.protocols.constraint_generator.TerminiConstraintGenerator) -> rosetta.protocols.constraint_generator.ConstraintGenerator max_distance(...) from builtins.PyCapsule max_distance(rosetta.protocols.constraint_generator.TerminiConstraintGenerator) -> float min_distance(...) from builtins.PyCapsule min_distance(rosetta.protocols.constraint_generator.TerminiConstraintGenerator) -> float set_max_distance(...) from builtins.PyCapsule set_max_distance(self : rosetta.protocols.constraint_generator.TerminiConstraintGenerator, dist : float) -> NoneType set_min_distance(...) from builtins.PyCapsule set_min_distance(self : rosetta.protocols.constraint_generator.TerminiConstraintGenerator, dist : float) -> NoneType set_sd(...) from builtins.PyCapsule set_sd(self : rosetta.protocols.constraint_generator.TerminiConstraintGenerator, sd : float) -> NoneType set_weight(...) from builtins.PyCapsule set_weight(self : rosetta.protocols.constraint_generator.TerminiConstraintGenerator, weight : float) -> NoneType weight(...) from builtins.PyCapsule weight(rosetta.protocols.constraint_generator.TerminiConstraintGenerator) -> float Methods inherited from ConstraintGenerator: clear_stored_constraints(...) from builtins.PyCapsule clear_stored_constraints(rosetta.protocols.constraint_generator.ConstraintGenerator) -> NoneType id(...) from builtins.PyCapsule id(rosetta.protocols.constraint_generator.ConstraintGenerator) -> str parse_my_tag(...) from builtins.PyCapsule parse_my_tag(self : rosetta.protocols.constraint_generator.ConstraintGenerator, tag : rosetta.utility.tag.Tag, data : rosetta.basic.datacache.DataMap) -> NoneType   parses XML tag -- calls protected parse_tag() function retrieve_constraints(...) from builtins.PyCapsule retrieve_constraints(rosetta.protocols.constraint_generator.ConstraintGenerator) -> rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t set_id(...) from builtins.PyCapsule set_id(self : rosetta.protocols.constraint_generator.ConstraintGenerator, id : str) -> NoneType store_constraints(...) from builtins.PyCapsule store_constraints(self : rosetta.protocols.constraint_generator.ConstraintGenerator, csts : rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t) -> NoneType   class TerminiConstraintGeneratorCreator(ConstraintGeneratorCreator)       Method resolution order: TerminiConstraintGeneratorCreator ConstraintGeneratorCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.constraint_generator.TerminiConstraintGeneratorCreator,  : rosetta.protocols.constraint_generator.TerminiConstraintGeneratorCreator) -> rosetta.protocols.constraint_generator.TerminiConstraintGeneratorCreator create_constraint_generator(...) from builtins.PyCapsule create_constraint_generator(rosetta.protocols.constraint_generator.TerminiConstraintGeneratorCreator) -> rosetta.protocols.constraint_generator.ConstraintGenerator keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.constraint_generator.TerminiConstraintGeneratorCreator) -> str

Functions
		compute_nres_in_asymmetric_unit(...) method of builtins.PyCapsule instance compute_nres_in_asymmetric_unit(pose : rosetta.core.pose.Pose) -> int   find number of residues -- if pose is symetric,  returns nubmer of symmetry-independent residues create_func(...) method of builtins.PyCapsule instance create_func(func_def : str) -> rosetta.core.scoring.func.Func   creates a function from a text definition generate_seqmap_from_poses(...) method of builtins.PyCapsule instance generate_seqmap_from_poses(pose1 : rosetta.core.pose.Pose, pose2 : rosetta.core.pose.Pose) -> rosetta.core.id.SequenceMapping   creates a sequencemapping from pose1 to pose2 get_native_pose(...) method of builtins.PyCapsule instance get_native_pose() -> rosetta.core.pose.Pose   gets native pose from command line option, if one is specified parse_constraint_generators(...) method of builtins.PyCapsule instance parse_constraint_generators(tag : rosetta.utility.tag.Tag, data : rosetta.basic.datacache.DataMap) -> rosetta.utility.vector1_std_shared_ptr_const_protocols_constraint_generator_ConstraintGenerator_t   parses constraint generators from a tag  returns vector of ConstraintGeneratorCOPs scalar_weighted(...) method of builtins.PyCapsule instance scalar_weighted(func : rosetta.core.scoring.func.Func, weight : float) -> rosetta.core.scoring.func.Func   helper function to wrap a function with a scalar weighted function