Bindings for protocols::backrub namespace

Classes
		builtins.object BackrubSegment rosetta.protocols.canonical_sampling.ThermodynamicMover(rosetta.protocols.moves.Mover) BackrubMover BackrubSidechainMover rosetta.protocols.moves.Mover(builtins.object) BackrubProtocol rosetta.protocols.moves.MoverCreator(builtins.object) BackrubMoverCreator BackrubProtocolCreator BackrubSidechainMoverCreator   class BackrubMover(rosetta.protocols.canonical_sampling.ThermodynamicMover)     class for applying backrub moves to arbitrary protein segments     Method resolution order: BackrubMover rosetta.protocols.canonical_sampling.ThermodynamicMover rosetta.protocols.moves.Mover builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.backrub.BackrubMover) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. add_mainchain_segments(...) from builtins.PyCapsule add_mainchain_segments(*args, **kwargs) Overloaded function.   1. add_mainchain_segments(self : rosetta.protocols.backrub.BackrubMover, atomids : rosetta.utility.vector1_core_id_AtomID, min_atoms : int, max_atoms : int) -> int   add segments between a list of mainchain atomids   2. add_mainchain_segments(self : rosetta.protocols.backrub.BackrubMover, resnums : rosetta.utility.vector1_unsigned_long, atomnames : rosetta.utility.vector1_std_string, min_atoms : int, max_atoms : int) -> int   add segments between mainchain atoms in contiguous stretches of residues   3. add_mainchain_segments(rosetta.protocols.backrub.BackrubMover) -> int   add segments between mainchain atoms using stored parameters add_mainchain_segments_from_options(...) from builtins.PyCapsule add_mainchain_segments_from_options(rosetta.protocols.backrub.BackrubMover) -> int   add segments between mainchain atoms using command line options add_segment(...) from builtins.PyCapsule add_segment(*args, **kwargs) Overloaded function.   1. add_segment(self : rosetta.protocols.backrub.BackrubMover, start_atomid : rosetta.core.id.AtomID, end_atomid : rosetta.core.id.AtomID) -> int   add a segment to the mover   2. add_segment(self : rosetta.protocols.backrub.BackrubMover, start_atomid : rosetta.core.id.AtomID, end_atomid : rosetta.core.id.AtomID, max_angle_disp : float) -> int   add a segment to the mover apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.backrub.BackrubMover, pose : rosetta.core.pose.Pose) -> NoneType branchopt(...) from builtins.PyCapsule branchopt(rosetta.protocols.backrub.BackrubMover) -> rosetta.protocols.branch_angle.BranchAngleOptimizer   get the branch angle optimizer stored in the mover clear_segments(...) from builtins.PyCapsule clear_segments(rosetta.protocols.backrub.BackrubMover) -> NoneType   remove all segements clone(...) from builtins.PyCapsule clone(rosetta.protocols.backrub.BackrubMover) -> rosetta.protocols.moves.Mover custom_angle(...) from builtins.PyCapsule custom_angle(rosetta.protocols.backrub.BackrubMover) -> bool   get whether rotation angle is customized fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.backrub.BackrubMover) -> rosetta.protocols.moves.Mover get_name(...) from builtins.PyCapsule get_name(rosetta.protocols.backrub.BackrubMover) -> str has_segment(...) from builtins.PyCapsule has_segment(self : rosetta.protocols.backrub.BackrubMover, start_atomid : rosetta.core.id.AtomID, end_atomid : rosetta.core.id.AtomID) -> bool   determine whether a given segment exists init_with_options(...) from builtins.PyCapsule init_with_options(rosetta.protocols.backrub.BackrubMover) -> NoneType initialize_simulation(...) from builtins.PyCapsule initialize_simulation(self : rosetta.protocols.backrub.BackrubMover, pose : rosetta.core.pose.Pose, metropolis_hastings_mover : protocols::canonical_sampling::MetropolisHastingsMover, cycle : int) -> NoneType last_angle(...) from builtins.PyCapsule last_angle(rosetta.protocols.backrub.BackrubMover) -> float   get the last rotation angle last_end_atom_name(...) from builtins.PyCapsule last_end_atom_name(rosetta.protocols.backrub.BackrubMover) -> str   get the name of the atom at the end of the last segment last_segment_id(...) from builtins.PyCapsule last_segment_id(rosetta.protocols.backrub.BackrubMover) -> int   get id the last backrub segment moved last_start_atom_name(...) from builtins.PyCapsule last_start_atom_name(rosetta.protocols.backrub.BackrubMover) -> str   get the name of the atom at the start of the last segment max_angle_disp_4(...) from builtins.PyCapsule max_angle_disp_4(rosetta.protocols.backrub.BackrubMover) -> float   get maximum angular displacement for 4 atom segments max_angle_disp_7(...) from builtins.PyCapsule max_angle_disp_7(rosetta.protocols.backrub.BackrubMover) -> float   get maximum angular displacement for 7 atom segments max_angle_disp_slope(...) from builtins.PyCapsule max_angle_disp_slope(rosetta.protocols.backrub.BackrubMover) -> float   get maximum angular displacement slope for other atom segments max_atoms(...) from builtins.PyCapsule max_atoms(rosetta.protocols.backrub.BackrubMover) -> int   get maximum segment length if no segments manually defined min_atoms(...) from builtins.PyCapsule min_atoms(rosetta.protocols.backrub.BackrubMover) -> int   get minimum segment length if no segments manually defined next_angle(...) from builtins.PyCapsule next_angle(rosetta.protocols.backrub.BackrubMover) -> float   get the rotation angle for the next move next_segment_id(...) from builtins.PyCapsule next_segment_id(rosetta.protocols.backrub.BackrubMover) -> int   set the id for the next move (i.e. nonrandom) num_segments(...) from builtins.PyCapsule num_segments(rosetta.protocols.backrub.BackrubMover) -> int   get the number of segments optimize_branch_angles(...) from builtins.PyCapsule optimize_branch_angles(self : rosetta.protocols.backrub.BackrubMover, pose : rosetta.core.pose.Pose) -> NoneType   optimize branching atoms for all segment pivot atoms pivot_atoms(...) from builtins.PyCapsule pivot_atoms(rosetta.protocols.backrub.BackrubMover) -> rosetta.utility.vector1_std_string   get atom names to pivot if no segments manually defined pivot_residues(...) from builtins.PyCapsule pivot_residues(rosetta.protocols.backrub.BackrubMover) -> rosetta.utility.vector1_unsigned_long   get residues to pivot if no segments manually defined preserve_detailed_balance(...) from builtins.PyCapsule preserve_detailed_balance(rosetta.protocols.backrub.BackrubMover) -> bool   get whether detailed balance is preserved (i.e. no branch angle optimization during moves) random_angle(...) from builtins.PyCapsule random_angle(self : rosetta.protocols.backrub.BackrubMover, pose : rosetta.core.pose.Pose, segment_id : int, start_constants : rosetta.utility.vector0_double, end_constants : rosetta.utility.vector0_double) -> float   get a random angle for a segment subject to bond angle and rotation constraints require_mm_bend(...) from builtins.PyCapsule require_mm_bend(rosetta.protocols.backrub.BackrubMover) -> bool   get whether to exit during initialize_simulation if the mm_bend term isn't turned on rotate_segment(...) from builtins.PyCapsule rotate_segment(self : rosetta.protocols.backrub.BackrubMover, pose : rosetta.core.pose.Pose, segment_id : int, angle : float, start_constants : rosetta.utility.vector0_double, end_constants : rosetta.utility.vector0_double) -> NoneType   do a manual rotation about the given segment segment(...) from builtins.PyCapsule segment(self : rosetta.protocols.backrub.BackrubMover, segment_id : int) -> rosetta.protocols.backrub.BackrubSegment   get a particular segment segment_id(...) from builtins.PyCapsule segment_id(self : rosetta.protocols.backrub.BackrubMover, start_atomid : rosetta.core.id.AtomID, end_atomid : rosetta.core.id.AtomID) -> int   get the segment ID for a given starting and ending atom        if the segment ID does not exist, 0 is returned set_custom_angle(...) from builtins.PyCapsule set_custom_angle(self : rosetta.protocols.backrub.BackrubMover, custom_angle : bool) -> NoneType   set whether rotation angle is customized set_max_angle_disp_4(...) from builtins.PyCapsule set_max_angle_disp_4(self : rosetta.protocols.backrub.BackrubMover, max_angle_disp_4 : float) -> NoneType   set maximum angular displacement for 4 atom segments set_max_angle_disp_7(...) from builtins.PyCapsule set_max_angle_disp_7(self : rosetta.protocols.backrub.BackrubMover, max_angle_disp_7 : float) -> NoneType   set maximum angular displacement for 7 atom segments set_max_angle_disp_slope(...) from builtins.PyCapsule set_max_angle_disp_slope(self : rosetta.protocols.backrub.BackrubMover, max_angle_disp_slope : float) -> NoneType   set maximum angular displacement slope for other atom segments set_max_atoms(...) from builtins.PyCapsule set_max_atoms(self : rosetta.protocols.backrub.BackrubMover, max_atoms : int) -> NoneType   set maximum segment length if no segments manually defined set_min_atoms(...) from builtins.PyCapsule set_min_atoms(self : rosetta.protocols.backrub.BackrubMover, min_atoms : int) -> NoneType   set minimum segment length if no segments manually defined set_movemap(...) from builtins.PyCapsule set_movemap(self : rosetta.protocols.backrub.BackrubMover, movemap : rosetta.core.kinematics.MoveMap) -> NoneType   Sets Pivot Residues from the Movemap.  Each contiguous set of residues  with BB enabled will be used as a segment. set_next_angle(...) from builtins.PyCapsule set_next_angle(self : rosetta.protocols.backrub.BackrubMover, next_angle : float) -> NoneType   set the rotation angle for the next move set_next_segment_id(...) from builtins.PyCapsule set_next_segment_id(self : rosetta.protocols.backrub.BackrubMover, next_segment_id : int) -> NoneType   set the id for the next move (i.e. nonrandom) set_pivot_atoms(...) from builtins.PyCapsule set_pivot_atoms(self : rosetta.protocols.backrub.BackrubMover, pivot_atoms : rosetta.utility.vector1_std_string) -> NoneType   set atom names to pivot if no segments manually defined set_pivot_residues(...) from builtins.PyCapsule set_pivot_residues(self : rosetta.protocols.backrub.BackrubMover, pivot_residues : rosetta.utility.vector1_unsigned_long) -> NoneType   set residues to pivot if no segments manually defined set_preserve_detailed_balance(...) from builtins.PyCapsule set_preserve_detailed_balance(self : rosetta.protocols.backrub.BackrubMover, preserve_detailed_balance : bool) -> NoneType   set whether detailed balance is preserved (i.e. no branch angle optimization during moves) set_require_mm_bend(...) from builtins.PyCapsule set_require_mm_bend(self : rosetta.protocols.backrub.BackrubMover, require_mm_bend : bool) -> NoneType   set whether to exit during initialize_simulation if the mm_bend term isn't turned on torsion_id_ranges(...) from builtins.PyCapsule torsion_id_ranges(self : rosetta.protocols.backrub.BackrubMover, pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_core_id_TorsionID_Range   get the TorsionIDs perturbed by the mover during moves, along with their ranges update_type(...) from builtins.PyCapsule update_type(rosetta.protocols.backrub.BackrubMover) -> NoneType   update string describing the move type Methods inherited from rosetta.protocols.canonical_sampling.ThermodynamicMover: assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.canonical_sampling.ThermodynamicMover,  : rosetta.protocols.canonical_sampling.ThermodynamicMover) -> rosetta.protocols.canonical_sampling.ThermodynamicMover finalize_simulation(...) from builtins.PyCapsule finalize_simulation(self : rosetta.protocols.canonical_sampling.ThermodynamicMover, pose : rosetta.core.pose.Pose, metropolis_hastings_mover : protocols::canonical_sampling::MetropolisHastingsMover) -> NoneType   Callback executed after all Monte Carlo trials are completed. is_multi_trial(...) from builtins.PyCapsule is_multi_trial(rosetta.protocols.canonical_sampling.ThermodynamicMover) -> bool   Return true if the move performs multiple trials on each apply.      last_inner_score_delta_over_temperature()      metropolis_hastings_mover()      set_metropolis_hastings_mover() last_inner_score_delta_over_temperature(...) from builtins.PyCapsule last_inner_score_delta_over_temperature(rosetta.protocols.canonical_sampling.ThermodynamicMover) -> float   If this is a multi-trial move, return the change in internal  score/temperature caused by the last call to apply().      is_multi_trial() last_proposal_density_ratio(...) from builtins.PyCapsule last_proposal_density_ratio(rosetta.protocols.canonical_sampling.ThermodynamicMover) -> float   Return the proposal density ratio for last apply method. metropolis_hastings_mover(...) from builtins.PyCapsule metropolis_hastings_mover(rosetta.protocols.canonical_sampling.ThermodynamicMover) -> rosetta.std.weak_ptr_protocols_canonical_sampling_MetropolisHastingsMover_t   If this is a multi-trial move, return the MetropolisHastingsMover  being used internally.      is_multi_trial() observe_after_metropolis(...) from builtins.PyCapsule observe_after_metropolis(self : rosetta.protocols.canonical_sampling.ThermodynamicMover, metropolis_hastings_mover : protocols::canonical_sampling::MetropolisHastingsMover) -> NoneType   Callback executed after the Metropolis criterion is evaluated. set_metropolis_hastings_mover(...) from builtins.PyCapsule set_metropolis_hastings_mover(self : rosetta.protocols.canonical_sampling.ThermodynamicMover, metropolis_hastings_mover : rosetta.std.weak_ptr_protocols_canonical_sampling_MetropolisHastingsMover_t) -> NoneType   If this is a multi-trial move, set the MetropolisHastingsMover to  be used internally.      is_multi_trial() Methods inherited from rosetta.protocols.moves.Mover: clear_info(...) from builtins.PyCapsule clear_info(rosetta.protocols.moves.Mover) -> NoneType   Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.      clear_info is called by jd2 before calling apply create(...) from builtins.PyCapsule create(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover get_additional_output(...) from builtins.PyCapsule get_additional_output(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose   fpd      Mechanism by which a mover may return multiple output poses from a single input pose. get_current_job(...) from builtins.PyCapsule get_current_job(rosetta.protocols.moves.Mover) -> protocols::jobdist::BasicJob get_current_tag(...) from builtins.PyCapsule get_current_tag(rosetta.protocols.moves.Mover) -> str   A tag is a unique identifier used to identify structures produced  by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag )  sets the tag.  This functionality is not intended for use with the 2008 job distributor. get_input_pose(...) from builtins.PyCapsule get_input_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose get_last_move_status(...) from builtins.PyCapsule get_last_move_status(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.MoverStatus   returns status after an apply().  The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say "that run was no good, skip it" then use the protected last_move_status(MoverStatus) to change the value that this function will return. get_native_pose(...) from builtins.PyCapsule get_native_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose get_self_ptr(...) from builtins.PyCapsule get_self_ptr(*args, **kwargs) Overloaded function.   1. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover   2. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover get_self_weak_ptr(...) from builtins.PyCapsule get_self_weak_ptr(*args, **kwargs) Overloaded function.   1. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_const_protocols_moves_Mover_t   2. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_protocols_moves_Mover_t get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.moves.Mover) -> str info(...) from builtins.PyCapsule info(*args, **kwargs) Overloaded function.   1. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t   non-const accessor   2. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t   const accessor name(...) from builtins.PyCapsule name() -> str register_options(...) from builtins.PyCapsule register_options(*args, **kwargs) Overloaded function.   1. register_options() -> NoneType   Overload this static method if you access options within the mover.      These options will end up in -help of your application if users of this mover call register_options.  Do this recursively!  If you use movers within your mover, call their register_options in your register_options() method.   2. register_options() -> NoneType   3. register_options() -> NoneType   4. register_options() -> NoneType   5. register_options() -> NoneType   6. register_options() -> NoneType   7. register_options() -> NoneType   8. register_options() -> NoneType   9. register_options() -> NoneType   Associates relevant options with the AntibodyModeler class   10. register_options() -> NoneType   Associates relevant options with the AntibodyModeler class   11. register_options() -> NoneType   Associates relevant options with the SnugDock class   12. register_options() -> NoneType   Associates relevant options with the SnugDockProtocol class   13. register_options() -> NoneType   Register the options used by this mover with the global options  system.   14. register_options() -> NoneType   15. register_options() -> NoneType   Associate relevant options with the TemperedDocking class.   16. register_options() -> NoneType   17. register_options() -> NoneType   18. register_options() -> NoneType   Associates relevant options with the TemperedDocking class.   19. register_options() -> NoneType   20. register_options() -> NoneType   Associates relevant options with the ConstraintSetMover class   21. register_options() -> NoneType   22. register_options() -> NoneType   Associates relevant options with the DockingInitialPerturbation class   23. register_options() -> NoneType   Associates relevant options with the DockingProtocol class   24. register_options() -> NoneType   Associates relevant options with the TemperedDocking class   25. register_options() -> NoneType   26. register_options() -> NoneType   27. register_options() -> NoneType   28. register_options() -> NoneType   register options   29. register_options() -> NoneType   30. register_options() -> NoneType   Registers applicable options   31. register_options() -> NoneType   Register options with the option system.   32. register_options() -> NoneType   33. register_options() -> NoneType   34. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycle class   35. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycleContainer class   36. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycle class   37. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycle class   38. register_options() -> NoneType   39. register_options() -> NoneType   Register options with the option system.   40. register_options() -> NoneType reinitialize_for_each_job(...) from builtins.PyCapsule reinitialize_for_each_job(rosetta.protocols.moves.Mover) -> bool   Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on  each use. reinitialize_for_new_input(...) from builtins.PyCapsule reinitialize_for_new_input(rosetta.protocols.moves.Mover) -> bool   Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input  pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for  that one input pose). reset_status(...) from builtins.PyCapsule reset_status(rosetta.protocols.moves.Mover) -> NoneType   resets status to SUCCESS, meant to be used before an apply().  The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. set_current_job(...) from builtins.PyCapsule set_current_job(self : rosetta.protocols.moves.Mover, job : protocols::jobdist::BasicJob) -> NoneType   ////////////////////////////end Job Distributor interface//////////////////////////////////////// set_current_tag(...) from builtins.PyCapsule set_current_tag(self : rosetta.protocols.moves.Mover, new_tag : str) -> NoneType set_input_pose(...) from builtins.PyCapsule set_input_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType   setter for poses contained for rms set_native_pose(...) from builtins.PyCapsule set_native_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType   setter for native poses contained for rms ---- we should get rid of this method? it is widely used, but a bit unsafe set_type(...) from builtins.PyCapsule set_type(self : rosetta.protocols.moves.Mover, setting : str) -> NoneType test_move(...) from builtins.PyCapsule test_move(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType   : Unit test support function.  Apply one move to a given pose.       Allows extra test specific functions to be called before applying type(...) from builtins.PyCapsule type(*args, **kwargs) Overloaded function.   1. type(rosetta.protocols.moves.Mover) -> str   2. type(self : rosetta.protocols.moves.Mover, type_in : str) -> NoneType   class BackrubMoverCreator(rosetta.protocols.moves.MoverCreator)       Method resolution order: BackrubMoverCreator rosetta.protocols.moves.MoverCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.backrub.BackrubMoverCreator,  : rosetta.protocols.backrub.BackrubMoverCreator) -> rosetta.protocols.backrub.BackrubMoverCreator create_mover(...) from builtins.PyCapsule create_mover(rosetta.protocols.backrub.BackrubMoverCreator) -> rosetta.protocols.moves.Mover keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.backrub.BackrubMoverCreator) -> str mover_name(...) from builtins.PyCapsule mover_name() -> str   class BackrubProtocol(rosetta.protocols.moves.Mover)       Method resolution order: BackrubProtocol rosetta.protocols.moves.Mover builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.backrub.BackrubProtocol) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.backrub.BackrubProtocol, pose : rosetta.core.pose.Pose) -> NoneType assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.backrub.BackrubProtocol,  : rosetta.protocols.backrub.BackrubProtocol) -> rosetta.protocols.backrub.BackrubProtocol clone(...) from builtins.PyCapsule clone(rosetta.protocols.backrub.BackrubProtocol) -> rosetta.protocols.moves.Mover fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.backrub.BackrubProtocol) -> rosetta.protocols.moves.Mover get_name(...) from builtins.PyCapsule get_name(rosetta.protocols.backrub.BackrubProtocol) -> str set_backrub_mover(...) from builtins.PyCapsule set_backrub_mover(self : rosetta.protocols.backrub.BackrubProtocol, backrub_mover : rosetta.protocols.backrub.BackrubMover) -> NoneType   Set a pre-configured Backrub Mover. set_movemap(...) from builtins.PyCapsule set_movemap(self : rosetta.protocols.backrub.BackrubProtocol, movemap : rosetta.core.kinematics.MoveMap) -> NoneType   Set the movemap for the whole protocol.  Uses contiguous backbone regions for backrub to set pivot residues  Within these segments, backrub will occur. set_movemap_smallmover(...) from builtins.PyCapsule set_movemap_smallmover(self : rosetta.protocols.backrub.BackrubProtocol, movemap : rosetta.core.kinematics.MoveMap) -> NoneType   Set the MoveMap that will only be used for the SmallMover. set_pivot_atoms(...) from builtins.PyCapsule set_pivot_atoms(self : rosetta.protocols.backrub.BackrubProtocol, pivot_atoms : rosetta.utility.vector1_std_string) -> NoneType   Set the type of atoms to use for backrub.  These are atom names.  Default is to only use CA as pivots. set_pivot_residues(...) from builtins.PyCapsule set_pivot_residues(self : rosetta.protocols.backrub.BackrubProtocol, pivot_residues : rosetta.utility.vector1_unsigned_long) -> NoneType   Set the pivot residues for backrub.  Will use contiguous residues as segments.  Within these segments, backrub will occur. set_scorefunction(...) from builtins.PyCapsule set_scorefunction(self : rosetta.protocols.backrub.BackrubProtocol, scorefxn : rosetta.core.scoring.ScoreFunction) -> NoneType   Set the Scorefunction.  NOTE: Clones the scorefxn. set_taskfactory(...) from builtins.PyCapsule set_taskfactory(self : rosetta.protocols.backrub.BackrubProtocol, tf : rosetta.core.pack.task.TaskFactory) -> NoneType   Set the taskfactory used for sidechain moves.  NOTE: Clones the TF.  Sets C-Beta off as they are not compatable with branch angle optimization. write_database(...) from builtins.PyCapsule write_database(rosetta.protocols.backrub.BackrubProtocol) -> NoneType Methods inherited from rosetta.protocols.moves.Mover: clear_info(...) from builtins.PyCapsule clear_info(rosetta.protocols.moves.Mover) -> NoneType   Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.      clear_info is called by jd2 before calling apply create(...) from builtins.PyCapsule create(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover get_additional_output(...) from builtins.PyCapsule get_additional_output(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose   fpd      Mechanism by which a mover may return multiple output poses from a single input pose. get_current_job(...) from builtins.PyCapsule get_current_job(rosetta.protocols.moves.Mover) -> protocols::jobdist::BasicJob get_current_tag(...) from builtins.PyCapsule get_current_tag(rosetta.protocols.moves.Mover) -> str   A tag is a unique identifier used to identify structures produced  by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag )  sets the tag.  This functionality is not intended for use with the 2008 job distributor. get_input_pose(...) from builtins.PyCapsule get_input_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose get_last_move_status(...) from builtins.PyCapsule get_last_move_status(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.MoverStatus   returns status after an apply().  The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say "that run was no good, skip it" then use the protected last_move_status(MoverStatus) to change the value that this function will return. get_native_pose(...) from builtins.PyCapsule get_native_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose get_self_ptr(...) from builtins.PyCapsule get_self_ptr(*args, **kwargs) Overloaded function.   1. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover   2. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover get_self_weak_ptr(...) from builtins.PyCapsule get_self_weak_ptr(*args, **kwargs) Overloaded function.   1. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_const_protocols_moves_Mover_t   2. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_protocols_moves_Mover_t get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.moves.Mover) -> str info(...) from builtins.PyCapsule info(*args, **kwargs) Overloaded function.   1. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t   non-const accessor   2. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t   const accessor last_proposal_density_ratio(...) from builtins.PyCapsule last_proposal_density_ratio(rosetta.protocols.moves.Mover) -> float name(...) from builtins.PyCapsule name() -> str register_options(...) from builtins.PyCapsule register_options(*args, **kwargs) Overloaded function.   1. register_options() -> NoneType   Overload this static method if you access options within the mover.      These options will end up in -help of your application if users of this mover call register_options.  Do this recursively!  If you use movers within your mover, call their register_options in your register_options() method.   2. register_options() -> NoneType   3. register_options() -> NoneType   4. register_options() -> NoneType   5. register_options() -> NoneType   6. register_options() -> NoneType   7. register_options() -> NoneType   8. register_options() -> NoneType   9. register_options() -> NoneType   Associates relevant options with the AntibodyModeler class   10. register_options() -> NoneType   Associates relevant options with the AntibodyModeler class   11. register_options() -> NoneType   Associates relevant options with the SnugDock class   12. register_options() -> NoneType   Associates relevant options with the SnugDockProtocol class   13. register_options() -> NoneType   Register the options used by this mover with the global options  system.   14. register_options() -> NoneType   15. register_options() -> NoneType   Associate relevant options with the TemperedDocking class.   16. register_options() -> NoneType   17. register_options() -> NoneType   18. register_options() -> NoneType   Associates relevant options with the TemperedDocking class.   19. register_options() -> NoneType   20. register_options() -> NoneType   Associates relevant options with the ConstraintSetMover class   21. register_options() -> NoneType   22. register_options() -> NoneType   Associates relevant options with the DockingInitialPerturbation class   23. register_options() -> NoneType   Associates relevant options with the DockingProtocol class   24. register_options() -> NoneType   Associates relevant options with the TemperedDocking class   25. register_options() -> NoneType   26. register_options() -> NoneType   27. register_options() -> NoneType   28. register_options() -> NoneType   register options   29. register_options() -> NoneType   30. register_options() -> NoneType   Registers applicable options   31. register_options() -> NoneType   Register options with the option system.   32. register_options() -> NoneType   33. register_options() -> NoneType   34. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycle class   35. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycleContainer class   36. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycle class   37. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycle class   38. register_options() -> NoneType   39. register_options() -> NoneType   Register options with the option system.   40. register_options() -> NoneType reinitialize_for_each_job(...) from builtins.PyCapsule reinitialize_for_each_job(rosetta.protocols.moves.Mover) -> bool   Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on  each use. reinitialize_for_new_input(...) from builtins.PyCapsule reinitialize_for_new_input(rosetta.protocols.moves.Mover) -> bool   Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input  pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for  that one input pose). reset_status(...) from builtins.PyCapsule reset_status(rosetta.protocols.moves.Mover) -> NoneType   resets status to SUCCESS, meant to be used before an apply().  The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. set_current_job(...) from builtins.PyCapsule set_current_job(self : rosetta.protocols.moves.Mover, job : protocols::jobdist::BasicJob) -> NoneType   ////////////////////////////end Job Distributor interface//////////////////////////////////////// set_current_tag(...) from builtins.PyCapsule set_current_tag(self : rosetta.protocols.moves.Mover, new_tag : str) -> NoneType set_input_pose(...) from builtins.PyCapsule set_input_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType   setter for poses contained for rms set_native_pose(...) from builtins.PyCapsule set_native_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType   setter for native poses contained for rms ---- we should get rid of this method? it is widely used, but a bit unsafe set_type(...) from builtins.PyCapsule set_type(self : rosetta.protocols.moves.Mover, setting : str) -> NoneType test_move(...) from builtins.PyCapsule test_move(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType   : Unit test support function.  Apply one move to a given pose.       Allows extra test specific functions to be called before applying type(...) from builtins.PyCapsule type(*args, **kwargs) Overloaded function.   1. type(rosetta.protocols.moves.Mover) -> str   2. type(self : rosetta.protocols.moves.Mover, type_in : str) -> NoneType   class BackrubProtocolCreator(rosetta.protocols.moves.MoverCreator)       Method resolution order: BackrubProtocolCreator rosetta.protocols.moves.MoverCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.backrub.BackrubProtocolCreator,  : rosetta.protocols.backrub.BackrubProtocolCreator) -> rosetta.protocols.backrub.BackrubProtocolCreator create_mover(...) from builtins.PyCapsule create_mover(rosetta.protocols.backrub.BackrubProtocolCreator) -> rosetta.protocols.moves.Mover keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.backrub.BackrubProtocolCreator) -> str mover_name(...) from builtins.PyCapsule mover_name() -> str   class BackrubSegment(builtins.object)     a class for holind information about individual backrub segments     Methods defined here: __init__(...) from builtins.PyCapsule __init__(self : rosetta.protocols.backrub.BackrubSegment, start_atomid : rosetta.core.id.AtomID, start_atomid1 : rosetta.core.id.AtomID, start_atomid2 : rosetta.core.id.AtomID, end_atomid : rosetta.core.id.AtomID, size : int, max_angle_disp : float) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. angle_disp(...) from builtins.PyCapsule angle_disp(rosetta.protocols.backrub.BackrubSegment) -> float   get overall angular displacement end_atomid(...) from builtins.PyCapsule end_atomid(rosetta.protocols.backrub.BackrubSegment) -> rosetta.core.id.AtomID   get AtomID of starting atom end_atoms1(...) from builtins.PyCapsule end_atoms1(self : rosetta.protocols.backrub.BackrubSegment, pose : rosetta.core.pose.Pose, end_atom_m1 : rosetta.core.kinematics.tree.Atom, end_atom : rosetta.core.kinematics.tree.Atom, end_atom_p1 : rosetta.core.kinematics.tree.Atom) -> NoneType   get mainchain atom tree atoms 1 bond away from the end pivot end_atoms2(...) from builtins.PyCapsule end_atoms2(self : rosetta.protocols.backrub.BackrubSegment, pose : rosetta.core.pose.Pose, end_atom_m2 : rosetta.core.kinematics.tree.Atom, end_atom_m1 : rosetta.core.kinematics.tree.Atom, end_atom : rosetta.core.kinematics.tree.Atom, end_atom_p1 : rosetta.core.kinematics.tree.Atom, end_atom_p2 : rosetta.core.kinematics.tree.Atom) -> NoneType   get mainchain atom tree atoms 2 bonds away from the end pivot max_angle_disp(...) from builtins.PyCapsule max_angle_disp(rosetta.protocols.backrub.BackrubSegment) -> float   get maximum angular displacement size(...) from builtins.PyCapsule size(rosetta.protocols.backrub.BackrubSegment) -> int   get the segment size start_atomid(...) from builtins.PyCapsule start_atomid(rosetta.protocols.backrub.BackrubSegment) -> rosetta.core.id.AtomID   get AtomID of starting atom start_atomid1(...) from builtins.PyCapsule start_atomid1(rosetta.protocols.backrub.BackrubSegment) -> rosetta.core.id.AtomID   get AtomID of first atom along the path from start to end start_atomid2(...) from builtins.PyCapsule start_atomid2(rosetta.protocols.backrub.BackrubSegment) -> rosetta.core.id.AtomID   get AtomID of second atom along the path from start to end start_atoms1(...) from builtins.PyCapsule start_atoms1(self : rosetta.protocols.backrub.BackrubSegment, pose : rosetta.core.pose.Pose, start_atom_m1 : rosetta.core.kinematics.tree.Atom, start_atom : rosetta.core.kinematics.tree.Atom, start_atom_p1 : rosetta.core.kinematics.tree.Atom) -> NoneType   get mainchain atom tree atoms 1 bond away from the start pivot start_atoms2(...) from builtins.PyCapsule start_atoms2(self : rosetta.protocols.backrub.BackrubSegment, pose : rosetta.core.pose.Pose, start_atom_m2 : rosetta.core.kinematics.tree.Atom, start_atom_m1 : rosetta.core.kinematics.tree.Atom, start_atom : rosetta.core.kinematics.tree.Atom, start_atom_p1 : rosetta.core.kinematics.tree.Atom, start_atom_p2 : rosetta.core.kinematics.tree.Atom) -> NoneType   get mainchain atom tree atoms 2 bonds away from the start pivot   class BackrubSidechainMover(rosetta.protocols.canonical_sampling.ThermodynamicMover)       Method resolution order: BackrubSidechainMover rosetta.protocols.canonical_sampling.ThermodynamicMover rosetta.protocols.moves.Mover builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.backrub.BackrubSidechainMover) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.backrub.BackrubSidechainMover, pose : rosetta.core.pose.Pose) -> NoneType assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.backrub.BackrubSidechainMover,  : rosetta.protocols.backrub.BackrubSidechainMover) -> rosetta.protocols.backrub.BackrubSidechainMover clone(...) from builtins.PyCapsule clone(rosetta.protocols.backrub.BackrubSidechainMover) -> rosetta.protocols.moves.Mover finalize_simulation(...) from builtins.PyCapsule finalize_simulation(self : rosetta.protocols.backrub.BackrubSidechainMover, pose : rosetta.core.pose.Pose, metropolis_hastings_mover : protocols::canonical_sampling::MetropolisHastingsMover) -> NoneType fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.backrub.BackrubSidechainMover) -> rosetta.protocols.moves.Mover get_name(...) from builtins.PyCapsule get_name(rosetta.protocols.backrub.BackrubSidechainMover) -> str initialize_simulation(...) from builtins.PyCapsule initialize_simulation(self : rosetta.protocols.backrub.BackrubSidechainMover, pose : rosetta.core.pose.Pose, metropolis_hastings_mover : protocols::canonical_sampling::MetropolisHastingsMover, cycle : int) -> NoneType observe_after_metropolis(...) from builtins.PyCapsule observe_after_metropolis(self : rosetta.protocols.backrub.BackrubSidechainMover, metropolis_hastings_mover : protocols::canonical_sampling::MetropolisHastingsMover) -> NoneType   callback after the Metropolis criterion is evaluated pivot_residues(...) from builtins.PyCapsule pivot_residues(rosetta.protocols.backrub.BackrubSidechainMover) -> rosetta.utility.vector1_unsigned_long preserve_detailed_balance(...) from builtins.PyCapsule preserve_detailed_balance(rosetta.protocols.backrub.BackrubSidechainMover) -> bool   get whether detailed balance is preserved prob_random_pert_current(...) from builtins.PyCapsule prob_random_pert_current(rosetta.protocols.backrub.BackrubSidechainMover) -> float prob_uniform(...) from builtins.PyCapsule prob_uniform(rosetta.protocols.backrub.BackrubSidechainMover) -> float   get the probability of uniformly sampling chi angles prob_withinrot(...) from builtins.PyCapsule prob_withinrot(rosetta.protocols.backrub.BackrubSidechainMover) -> float   get the probability of sampling within the same rotamer record_statistics(...) from builtins.PyCapsule record_statistics(rosetta.protocols.backrub.BackrubSidechainMover) -> bool   get whether to record mover statistics or not require_mm_bend(...) from builtins.PyCapsule require_mm_bend(rosetta.protocols.backrub.BackrubSidechainMover) -> bool   get whether to exit during initialize_simulation if the mm_bend term isn't turned on reset_statistics(...) from builtins.PyCapsule reset_statistics(rosetta.protocols.backrub.BackrubSidechainMover) -> NoneType set_pivot_residues(...) from builtins.PyCapsule set_pivot_residues(self : rosetta.protocols.backrub.BackrubSidechainMover, pivot_residues : rosetta.utility.vector1_unsigned_long) -> NoneType set_preserve_detailed_balance(...) from builtins.PyCapsule set_preserve_detailed_balance(self : rosetta.protocols.backrub.BackrubSidechainMover, preserve_detailed_balance : bool) -> NoneType   set whether detailed balance is preserved set_prob_random_pert_current(...) from builtins.PyCapsule set_prob_random_pert_current(self : rosetta.protocols.backrub.BackrubSidechainMover, prob_pert : float) -> NoneType set_prob_uniform(...) from builtins.PyCapsule set_prob_uniform(self : rosetta.protocols.backrub.BackrubSidechainMover, prob_uniform : float) -> NoneType   set the probability of uniformly sampling chi angles set_prob_withinrot(...) from builtins.PyCapsule set_prob_withinrot(self : rosetta.protocols.backrub.BackrubSidechainMover, prob_withinrot : float) -> NoneType   set the probability of sampling within the same rotamer set_record_statistics(...) from builtins.PyCapsule set_record_statistics(self : rosetta.protocols.backrub.BackrubSidechainMover, record_statistics : bool) -> NoneType   set whether to record mover statistics or not set_require_mm_bend(...) from builtins.PyCapsule set_require_mm_bend(self : rosetta.protocols.backrub.BackrubSidechainMover, require_mm_bend : bool) -> NoneType   set whether to exit during initialize_simulation if the mm_bend term isn't turned on set_statistics_filename(...) from builtins.PyCapsule set_statistics_filename(self : rosetta.protocols.backrub.BackrubSidechainMover, statistics_filename : str) -> NoneType   set filename for statistics output set_task_factory(...) from builtins.PyCapsule set_task_factory(self : rosetta.protocols.backrub.BackrubSidechainMover, task_factory : rosetta.core.pack.task.TaskFactory) -> NoneType statistics_filename(...) from builtins.PyCapsule statistics_filename(rosetta.protocols.backrub.BackrubSidechainMover) -> str   get filename for statistics output task_factory(...) from builtins.PyCapsule task_factory(rosetta.protocols.backrub.BackrubSidechainMover) -> rosetta.core.pack.task.TaskFactory torsion_id_ranges(...) from builtins.PyCapsule torsion_id_ranges(self : rosetta.protocols.backrub.BackrubSidechainMover, pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_core_id_TorsionID_Range   get the TorsionIDs perturbed by the mover during moves, along with their ranges update_segments(...) from builtins.PyCapsule update_segments(self : rosetta.protocols.backrub.BackrubSidechainMover, pose : rosetta.core.pose.Pose) -> NoneType Methods inherited from rosetta.protocols.canonical_sampling.ThermodynamicMover: is_multi_trial(...) from builtins.PyCapsule is_multi_trial(rosetta.protocols.canonical_sampling.ThermodynamicMover) -> bool   Return true if the move performs multiple trials on each apply.      last_inner_score_delta_over_temperature()      metropolis_hastings_mover()      set_metropolis_hastings_mover() last_inner_score_delta_over_temperature(...) from builtins.PyCapsule last_inner_score_delta_over_temperature(rosetta.protocols.canonical_sampling.ThermodynamicMover) -> float   If this is a multi-trial move, return the change in internal  score/temperature caused by the last call to apply().      is_multi_trial() last_proposal_density_ratio(...) from builtins.PyCapsule last_proposal_density_ratio(rosetta.protocols.canonical_sampling.ThermodynamicMover) -> float   Return the proposal density ratio for last apply method. metropolis_hastings_mover(...) from builtins.PyCapsule metropolis_hastings_mover(rosetta.protocols.canonical_sampling.ThermodynamicMover) -> rosetta.std.weak_ptr_protocols_canonical_sampling_MetropolisHastingsMover_t   If this is a multi-trial move, return the MetropolisHastingsMover  being used internally.      is_multi_trial() set_metropolis_hastings_mover(...) from builtins.PyCapsule set_metropolis_hastings_mover(self : rosetta.protocols.canonical_sampling.ThermodynamicMover, metropolis_hastings_mover : rosetta.std.weak_ptr_protocols_canonical_sampling_MetropolisHastingsMover_t) -> NoneType   If this is a multi-trial move, set the MetropolisHastingsMover to  be used internally.      is_multi_trial() Methods inherited from rosetta.protocols.moves.Mover: clear_info(...) from builtins.PyCapsule clear_info(rosetta.protocols.moves.Mover) -> NoneType   Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.      clear_info is called by jd2 before calling apply create(...) from builtins.PyCapsule create(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover get_additional_output(...) from builtins.PyCapsule get_additional_output(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose   fpd      Mechanism by which a mover may return multiple output poses from a single input pose. get_current_job(...) from builtins.PyCapsule get_current_job(rosetta.protocols.moves.Mover) -> protocols::jobdist::BasicJob get_current_tag(...) from builtins.PyCapsule get_current_tag(rosetta.protocols.moves.Mover) -> str   A tag is a unique identifier used to identify structures produced  by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag )  sets the tag.  This functionality is not intended for use with the 2008 job distributor. get_input_pose(...) from builtins.PyCapsule get_input_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose get_last_move_status(...) from builtins.PyCapsule get_last_move_status(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.MoverStatus   returns status after an apply().  The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say "that run was no good, skip it" then use the protected last_move_status(MoverStatus) to change the value that this function will return. get_native_pose(...) from builtins.PyCapsule get_native_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose get_self_ptr(...) from builtins.PyCapsule get_self_ptr(*args, **kwargs) Overloaded function.   1. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover   2. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover get_self_weak_ptr(...) from builtins.PyCapsule get_self_weak_ptr(*args, **kwargs) Overloaded function.   1. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_const_protocols_moves_Mover_t   2. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_protocols_moves_Mover_t get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.moves.Mover) -> str info(...) from builtins.PyCapsule info(*args, **kwargs) Overloaded function.   1. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t   non-const accessor   2. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t   const accessor name(...) from builtins.PyCapsule name() -> str register_options(...) from builtins.PyCapsule register_options(*args, **kwargs) Overloaded function.   1. register_options() -> NoneType   Overload this static method if you access options within the mover.      These options will end up in -help of your application if users of this mover call register_options.  Do this recursively!  If you use movers within your mover, call their register_options in your register_options() method.   2. register_options() -> NoneType   3. register_options() -> NoneType   4. register_options() -> NoneType   5. register_options() -> NoneType   6. register_options() -> NoneType   7. register_options() -> NoneType   8. register_options() -> NoneType   9. register_options() -> NoneType   Associates relevant options with the AntibodyModeler class   10. register_options() -> NoneType   Associates relevant options with the AntibodyModeler class   11. register_options() -> NoneType   Associates relevant options with the SnugDock class   12. register_options() -> NoneType   Associates relevant options with the SnugDockProtocol class   13. register_options() -> NoneType   Register the options used by this mover with the global options  system.   14. register_options() -> NoneType   15. register_options() -> NoneType   Associate relevant options with the TemperedDocking class.   16. register_options() -> NoneType   17. register_options() -> NoneType   18. register_options() -> NoneType   Associates relevant options with the TemperedDocking class.   19. register_options() -> NoneType   20. register_options() -> NoneType   Associates relevant options with the ConstraintSetMover class   21. register_options() -> NoneType   22. register_options() -> NoneType   Associates relevant options with the DockingInitialPerturbation class   23. register_options() -> NoneType   Associates relevant options with the DockingProtocol class   24. register_options() -> NoneType   Associates relevant options with the TemperedDocking class   25. register_options() -> NoneType   26. register_options() -> NoneType   27. register_options() -> NoneType   28. register_options() -> NoneType   register options   29. register_options() -> NoneType   30. register_options() -> NoneType   Registers applicable options   31. register_options() -> NoneType   Register options with the option system.   32. register_options() -> NoneType   33. register_options() -> NoneType   34. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycle class   35. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycleContainer class   36. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycle class   37. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycle class   38. register_options() -> NoneType   39. register_options() -> NoneType   Register options with the option system.   40. register_options() -> NoneType reinitialize_for_each_job(...) from builtins.PyCapsule reinitialize_for_each_job(rosetta.protocols.moves.Mover) -> bool   Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on  each use. reinitialize_for_new_input(...) from builtins.PyCapsule reinitialize_for_new_input(rosetta.protocols.moves.Mover) -> bool   Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input  pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for  that one input pose). reset_status(...) from builtins.PyCapsule reset_status(rosetta.protocols.moves.Mover) -> NoneType   resets status to SUCCESS, meant to be used before an apply().  The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. set_current_job(...) from builtins.PyCapsule set_current_job(self : rosetta.protocols.moves.Mover, job : protocols::jobdist::BasicJob) -> NoneType   ////////////////////////////end Job Distributor interface//////////////////////////////////////// set_current_tag(...) from builtins.PyCapsule set_current_tag(self : rosetta.protocols.moves.Mover, new_tag : str) -> NoneType set_input_pose(...) from builtins.PyCapsule set_input_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType   setter for poses contained for rms set_native_pose(...) from builtins.PyCapsule set_native_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType   setter for native poses contained for rms ---- we should get rid of this method? it is widely used, but a bit unsafe set_type(...) from builtins.PyCapsule set_type(self : rosetta.protocols.moves.Mover, setting : str) -> NoneType test_move(...) from builtins.PyCapsule test_move(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType   : Unit test support function.  Apply one move to a given pose.       Allows extra test specific functions to be called before applying type(...) from builtins.PyCapsule type(*args, **kwargs) Overloaded function.   1. type(rosetta.protocols.moves.Mover) -> str   2. type(self : rosetta.protocols.moves.Mover, type_in : str) -> NoneType   class BackrubSidechainMoverCreator(rosetta.protocols.moves.MoverCreator)       Method resolution order: BackrubSidechainMoverCreator rosetta.protocols.moves.MoverCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.backrub.BackrubSidechainMoverCreator,  : rosetta.protocols.backrub.BackrubSidechainMoverCreator) -> rosetta.protocols.backrub.BackrubSidechainMoverCreator create_mover(...) from builtins.PyCapsule create_mover(rosetta.protocols.backrub.BackrubSidechainMoverCreator) -> rosetta.protocols.moves.Mover keyname(...) from builtins.PyCapsule keyname(rosetta.protocols.backrub.BackrubSidechainMoverCreator) -> str mover_name(...) from builtins.PyCapsule mover_name() -> str

Functions
		append_fold_tree_to_file(...) method of builtins.PyCapsule instance append_fold_tree_to_file(foldtree : rosetta.core.kinematics.FoldTree, file_path : str) -> NoneType backrub_rotation_angles(...) method of builtins.PyCapsule instance backrub_rotation_angles(constants : rosetta.utility.vector0_double, tau : float, bondange : float, torsion1 : float, torsion2 : float) -> NoneType   calculate internal coordinate values for any tau value backrub_rotation_constants(...) method of builtins.PyCapsule instance backrub_rotation_constants(*args, **kwargs) Overloaded function.   1. backrub_rotation_constants(PM2_atom : rosetta.core.kinematics.tree.Atom, PM1_atom : rosetta.core.kinematics.tree.Atom, P_atom : rosetta.core.kinematics.tree.Atom, PP1_atom : rosetta.core.kinematics.tree.Atom, PP2_atom : rosetta.core.kinematics.tree.Atom, REF_atom : rosetta.core.kinematics.tree.Atom, constants : rosetta.utility.vector0_double) -> NoneType   calculate constants necessary for calculating internal angles/derivatives   2. backrub_rotation_constants(PM2_atom : rosetta.core.kinematics.tree.Atom, PM1_atom : rosetta.core.kinematics.tree.Atom, P_atom : rosetta.core.kinematics.tree.Atom, PP1_atom : rosetta.core.kinematics.tree.Atom, PP2_atom : rosetta.core.kinematics.tree.Atom, REF_atom : rosetta.core.kinematics.tree.Atom, constants : rosetta.utility.vector0_double, alpha_min : float) -> NoneType   calculate constants necessary for calculating internal angles/derivatives   3. backrub_rotation_constants(PM2_atom : rosetta.core.kinematics.tree.Atom, PM1_atom : rosetta.core.kinematics.tree.Atom, P_atom : rosetta.core.kinematics.tree.Atom, PP1_atom : rosetta.core.kinematics.tree.Atom, PP2_atom : rosetta.core.kinematics.tree.Atom, REF_atom : rosetta.core.kinematics.tree.Atom, constants : rosetta.utility.vector0_double, alpha_min : float, alpha_max : float) -> NoneType   calculate constants necessary for calculating internal angles/derivatives   4. backrub_rotation_constants(PM2_atom : rosetta.core.kinematics.tree.Atom, PM1_atom : rosetta.core.kinematics.tree.Atom, P_atom : rosetta.core.kinematics.tree.Atom, PP1_atom : rosetta.core.kinematics.tree.Atom, PP2_atom : rosetta.core.kinematics.tree.Atom, REF_atom : rosetta.core.kinematics.tree.Atom, constants : rosetta.utility.vector0_double, alpha_min : float, alpha_max : float, tau_intervals : rosetta.numeric.IntervalSet_double_t) -> NoneType   calculate constants necessary for calculating internal angles/derivatives get_pivot_residues_from_movemap(...) method of builtins.PyCapsule instance get_pivot_residues_from_movemap(movemap : rosetta.core.kinematics.MoveMap) -> rosetta.utility.vector1_unsigned_long positions_incompatible_with_task(...) method of builtins.PyCapsule instance positions_incompatible_with_task(pose : rosetta.core.pose.Pose, packertask : rosetta.core.pack.task.PackerTask) -> rosetta.utility.vector1_unsigned_long read_fold_tree_from_file(...) method of builtins.PyCapsule instance read_fold_tree_from_file(*args, **kwargs) Overloaded function.   1. read_fold_tree_from_file(foldtree : rosetta.core.kinematics.FoldTree, filepath : str) -> bool   2. read_fold_tree_from_file(pose : rosetta.core.pose.Pose, filepath : str) -> bool