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- builtins.object
-
- CDRCluster
- CDRClusterEnum
- CDRClusterEnumManager
- CDRClusterMatcher
- CDRClusterSet
- ClusterData
- rosetta.basic.datacache.CacheableData(builtins.object)
-
- BasicCDRClusterSet
- rosetta.protocols.features.FeaturesReporter(builtins.object)
-
- CDRClusterFeatures
- rosetta.protocols.features.FeaturesReporterCreator(builtins.object)
-
- CDRClusterFeaturesCreator
class BasicCDRClusterSet(rosetta.basic.datacache.CacheableData) |
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Basic container class for CDRClusterSet, with some extra information
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- Method resolution order:
- BasicCDRClusterSet
- rosetta.basic.datacache.CacheableData
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle) -> NoneType
2. __init__(self : handle, clusters : rosetta.utility.vector1_std_shared_ptr_protocols_antibody_clusters_CDRCluster_t) -> NoneType
3. __init__(handle, rosetta.protocols.antibody.clusters.BasicCDRClusterSet) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.antibody.clusters.BasicCDRClusterSet, : rosetta.protocols.antibody.clusters.BasicCDRClusterSet) -> rosetta.protocols.antibody.clusters.BasicCDRClusterSet
- clone(...) from builtins.PyCapsule
- clone(rosetta.protocols.antibody.clusters.BasicCDRClusterSet) -> rosetta.basic.datacache.CacheableData
- get_cluster(...) from builtins.PyCapsule
- get_cluster(self : rosetta.protocols.antibody.clusters.BasicCDRClusterSet, cdr : rosetta.protocols.antibody.CDRNameEnum) -> rosetta.protocols.antibody.clusters.CDRCluster
Get the CDRCluster
- set_cluster(...) from builtins.PyCapsule
- set_cluster(self : rosetta.protocols.antibody.clusters.BasicCDRClusterSet, cdr : rosetta.protocols.antibody.CDRNameEnum, cluster : rosetta.protocols.antibody.clusters.CDRCluster) -> NoneType
Set the CDRCluster
- set_clusters(...) from builtins.PyCapsule
- set_clusters(self : rosetta.protocols.antibody.clusters.BasicCDRClusterSet, clusters : rosetta.utility.vector1_std_shared_ptr_protocols_antibody_clusters_CDRCluster_t) -> NoneType
Get the full set of CDRClusters
Methods inherited from rosetta.basic.datacache.CacheableData:
- get_self_ptr(...) from builtins.PyCapsule
- get_self_ptr(*args, **kwargs)
Overloaded function.
1. get_self_ptr(rosetta.basic.datacache.CacheableData) -> rosetta.basic.datacache.CacheableData
self pointers
2. get_self_ptr(rosetta.basic.datacache.CacheableData) -> rosetta.basic.datacache.CacheableData
- get_self_weak_ptr(...) from builtins.PyCapsule
- get_self_weak_ptr(*args, **kwargs)
Overloaded function.
1. get_self_weak_ptr(rosetta.basic.datacache.CacheableData) -> rosetta.std.weak_ptr_const_basic_datacache_CacheableData_t
2. get_self_weak_ptr(rosetta.basic.datacache.CacheableData) -> rosetta.std.weak_ptr_basic_datacache_CacheableData_t
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class CDRCluster(builtins.object) |
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Simple class to hold and access CDRCluster info for a region of the pose.
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Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(rosetta.protocols.antibody.clusters.CDRCluster, rosetta.core.pose.Pose, rosetta.protocols.antibody.CDRNameEnum, int, rosetta.protocols.antibody.clusters.CDRClusterEnum, int, float) -> NoneType
doc
2. __init__(self : rosetta.protocols.antibody.clusters.CDRCluster, pose : rosetta.core.pose.Pose, cdr : rosetta.protocols.antibody.CDRNameEnum, cdr_length : int, cluster : rosetta.protocols.antibody.clusters.CDRClusterEnum, start : int, distance : float, cis_trans_match : bool) -> NoneType
3. __init__(self : rosetta.protocols.antibody.clusters.CDRCluster, src : rosetta.protocols.antibody.clusters.CDRCluster) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.antibody.clusters.CDRCluster, : rosetta.protocols.antibody.clusters.CDRCluster) -> rosetta.protocols.antibody.clusters.CDRCluster
- cdr(...) from builtins.PyCapsule
- cdr(rosetta.protocols.antibody.clusters.CDRCluster) -> rosetta.protocols.antibody.CDRNameEnum
- chain(...) from builtins.PyCapsule
- chain(rosetta.protocols.antibody.clusters.CDRCluster) -> str
return PDB chain
- cis_trans_match(...) from builtins.PyCapsule
- cis_trans_match(rosetta.protocols.antibody.clusters.CDRCluster) -> bool
Does the closest cluster match at cis_trans positions?
Currently, this should always be True.
- clone(...) from builtins.PyCapsule
- clone(rosetta.protocols.antibody.clusters.CDRCluster) -> rosetta.protocols.antibody.clusters.CDRCluster
- cluster(...) from builtins.PyCapsule
- cluster(rosetta.protocols.antibody.clusters.CDRCluster) -> rosetta.protocols.antibody.clusters.CDRClusterEnum
- distance(...) from builtins.PyCapsule
- distance(rosetta.protocols.antibody.clusters.CDRCluster) -> float
- end(...) from builtins.PyCapsule
- end(rosetta.protocols.antibody.clusters.CDRCluster) -> int
return Rosetta end that was used for construction
- length_normalized_distance(...) from builtins.PyCapsule
- length_normalized_distance(rosetta.protocols.antibody.clusters.CDRCluster) -> float
- normalized_distance_in_degrees(...) from builtins.PyCapsule
- normalized_distance_in_degrees(rosetta.protocols.antibody.clusters.CDRCluster) -> float
- pdb_end(...) from builtins.PyCapsule
- pdb_end(rosetta.protocols.antibody.clusters.CDRCluster) -> int
return PDB end. Useful for CDR length changes in other parts of the antibody when combined with numbering scheme ala AbInfo
- pdb_start(...) from builtins.PyCapsule
- pdb_start(rosetta.protocols.antibody.clusters.CDRCluster) -> int
return PDB start. Useful for CDR length changes in other parts of the antibody when combined with numbering scheme ala AbInfo
- start(...) from builtins.PyCapsule
- start(rosetta.protocols.antibody.clusters.CDRCluster) -> int
return Rosetta start that was used for construction
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class CDRClusterEnum(builtins.object) |
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Identified antibody CDR Clusters
See North, Lehmann, Dunbrack. (2011). JMB 406(2): 228-256.
More clusters will be added as the PDB grows.
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Methods defined here:
- __eq__(...) from builtins.PyCapsule
- __eq__(rosetta.protocols.antibody.clusters.CDRClusterEnum, rosetta.protocols.antibody.clusters.CDRClusterEnum) -> bool
- __hash__(...) from builtins.PyCapsule
- __hash__(rosetta.protocols.antibody.clusters.CDRClusterEnum) -> int
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(rosetta.protocols.antibody.clusters.CDRClusterEnum, int) -> NoneType
2. __init__(rosetta.protocols.antibody.clusters.CDRClusterEnum, int) -> NoneType
- __int__(...) from builtins.PyCapsule
- __int__(rosetta.protocols.antibody.clusters.CDRClusterEnum) -> int
- __ne__(...) from builtins.PyCapsule
- __ne__(rosetta.protocols.antibody.clusters.CDRClusterEnum, rosetta.protocols.antibody.clusters.CDRClusterEnum) -> bool
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- __repr__(...) from builtins.PyCapsule
- __repr__(rosetta.protocols.antibody.clusters.CDRClusterEnum) -> str
Data and other attributes defined here:
- CDRClusterEnum_start = CDRClusterEnum.CDRClusterEnum_start
- CDRClusterEnum_stop = CDRClusterEnum.CDRClusterEnum_stop
- CDRClusterEnum_total = CDRClusterEnum.CDRClusterEnum_total
- H1_10_1 = CDRClusterEnum.CDRClusterEnum_start
- H1_12_1 = CDRClusterEnum.H1_12_1
- H1_13_1 = CDRClusterEnum.H1_13_1
- H1_13_10 = CDRClusterEnum.H1_13_10
- H1_13_11 = CDRClusterEnum.H1_13_11
- H1_13_2 = CDRClusterEnum.H1_13_2
- H1_13_3 = CDRClusterEnum.H1_13_3
- H1_13_4 = CDRClusterEnum.H1_13_4
- H1_13_5 = CDRClusterEnum.H1_13_5
- H1_13_6 = CDRClusterEnum.H1_13_6
- H1_13_7 = CDRClusterEnum.H1_13_7
- H1_13_8 = CDRClusterEnum.H1_13_8
- H1_13_9 = CDRClusterEnum.H1_13_9
- H1_13_cis9_1 = CDRClusterEnum.H1_13_cis9_1
- H1_14_1 = CDRClusterEnum.H1_14_1
- H1_15_1 = CDRClusterEnum.H1_15_1
- H1_16_1 = CDRClusterEnum.H1_16_1
- H2_10_1 = CDRClusterEnum.H2_10_1
- H2_10_2 = CDRClusterEnum.H2_10_2
- H2_10_3 = CDRClusterEnum.H2_10_3
- H2_10_4 = CDRClusterEnum.H2_10_4
- H2_10_5 = CDRClusterEnum.H2_10_5
- H2_10_6 = CDRClusterEnum.H2_10_6
- H2_10_7 = CDRClusterEnum.H2_10_7
- H2_10_8 = CDRClusterEnum.H2_10_8
- H2_10_9 = CDRClusterEnum.H2_10_9
- H2_12_1 = CDRClusterEnum.H2_12_1
- H2_15_1 = CDRClusterEnum.H2_15_1
- H2_8_1 = CDRClusterEnum.H2_8_1
- H2_9_1 = CDRClusterEnum.H2_9_1
- H2_9_2 = CDRClusterEnum.H2_9_2
- H2_9_3 = CDRClusterEnum.H2_9_3
- H3_10_1 = CDRClusterEnum.H3_10_1
- H3_10_2 = CDRClusterEnum.H3_10_2
- H3_10_3 = CDRClusterEnum.H3_10_3
- H3_10_cis5_1 = CDRClusterEnum.H3_10_cis5_1
- H3_11_1 = CDRClusterEnum.H3_11_1
- H3_11_2 = CDRClusterEnum.H3_11_2
- H3_12_1 = CDRClusterEnum.H3_12_1
- H3_12_2 = CDRClusterEnum.H3_12_2
- H3_12_cis9_1 = CDRClusterEnum.H3_12_cis9_1
- H3_13_1 = CDRClusterEnum.H3_13_1
- H3_13_2 = CDRClusterEnum.H3_13_2
- H3_13_3 = CDRClusterEnum.H3_13_3
- H3_13_cis7_1 = CDRClusterEnum.H3_13_cis7_1
- H3_13_cis8_1 = CDRClusterEnum.H3_13_cis8_1
- H3_14_1 = CDRClusterEnum.H3_14_1
- H3_14_2 = CDRClusterEnum.H3_14_2
- H3_14_3 = CDRClusterEnum.H3_14_3
- H3_14_4 = CDRClusterEnum.H3_14_4
- H3_14_cis7_1 = CDRClusterEnum.H3_14_cis7_1
- H3_15_1 = CDRClusterEnum.H3_15_1
- H3_15_2 = CDRClusterEnum.H3_15_2
- H3_16_1 = CDRClusterEnum.H3_16_1
- H3_16_2 = CDRClusterEnum.H3_16_2
- H3_17_1 = CDRClusterEnum.H3_17_1
- H3_18_1 = CDRClusterEnum.H3_18_1
- H3_18_2 = CDRClusterEnum.H3_18_2
- H3_19_1 = CDRClusterEnum.H3_19_1
- H3_20_1 = CDRClusterEnum.H3_20_1
- H3_21_1 = CDRClusterEnum.H3_21_1
- H3_22_1 = CDRClusterEnum.H3_22_1
- H3_24_1 = CDRClusterEnum.H3_24_1
- H3_26_1 = CDRClusterEnum.H3_26_1
- H3_5_1 = CDRClusterEnum.H3_5_1
- H3_5_2 = CDRClusterEnum.H3_5_2
- H3_6_1 = CDRClusterEnum.H3_6_1
- H3_7_1 = CDRClusterEnum.H3_7_1
- H3_7_2 = CDRClusterEnum.H3_7_2
- H3_7_3 = CDRClusterEnum.H3_7_3
- H3_7_cis4_1 = CDRClusterEnum.H3_7_cis4_1
- H3_8_1 = CDRClusterEnum.H3_8_1
- H3_8_2 = CDRClusterEnum.H3_8_2
- H3_9_1 = CDRClusterEnum.H3_9_1
- H3_9_2 = CDRClusterEnum.H3_9_2
- L1_10_1 = CDRClusterEnum.L1_10_1
- L1_10_2 = CDRClusterEnum.L1_10_2
- L1_11_1 = CDRClusterEnum.L1_11_1
- L1_11_2 = CDRClusterEnum.L1_11_2
- L1_11_3 = CDRClusterEnum.L1_11_3
- L1_12_1 = CDRClusterEnum.L1_12_1
- L1_12_2 = CDRClusterEnum.L1_12_2
- L1_12_3 = CDRClusterEnum.L1_12_3
- L1_13_1 = CDRClusterEnum.L1_13_1
- L1_13_2 = CDRClusterEnum.L1_13_2
- L1_14_1 = CDRClusterEnum.L1_14_1
- L1_14_2 = CDRClusterEnum.L1_14_2
- L1_15_1 = CDRClusterEnum.L1_15_1
- L1_15_2 = CDRClusterEnum.L1_15_2
- L1_16_1 = CDRClusterEnum.L1_16_1
- L1_17_1 = CDRClusterEnum.L1_17_1
- L2_12_1 = CDRClusterEnum.L2_12_1
- L2_12_2 = CDRClusterEnum.L2_12_2
- L2_8_1 = CDRClusterEnum.L2_8_1
- L2_8_2 = CDRClusterEnum.L2_8_2
- L2_8_3 = CDRClusterEnum.L2_8_3
- L2_8_4 = CDRClusterEnum.L2_8_4
- L2_8_5 = CDRClusterEnum.L2_8_5
- L3_10_1 = CDRClusterEnum.L3_10_1
- L3_10_cis7_8_1 = CDRClusterEnum.L3_10_cis7_8_1
- L3_10_cis8_1 = CDRClusterEnum.L3_10_cis8_1
- L3_11_1 = CDRClusterEnum.L3_11_1
- L3_11_cis7_1 = CDRClusterEnum.CDRClusterEnum_stop
- L3_12_1 = CDRClusterEnum.L3_12_1
- L3_13_1 = CDRClusterEnum.L3_13_1
- L3_7_1 = CDRClusterEnum.L3_7_1
- L3_8_1 = CDRClusterEnum.L3_8_1
- L3_8_2 = CDRClusterEnum.L3_8_2
- L3_8_cis6_1 = CDRClusterEnum.L3_8_cis6_1
- L3_9_1 = CDRClusterEnum.L3_9_1
- L3_9_2 = CDRClusterEnum.L3_9_2
- L3_9_cis6_1 = CDRClusterEnum.L3_9_cis6_1
- L3_9_cis7_1 = CDRClusterEnum.L3_9_cis7_1
- L3_9_cis7_2 = CDRClusterEnum.L3_9_cis7_2
- L3_9_cis7_3 = CDRClusterEnum.L3_9_cis7_3
- NA = CDRClusterEnum.CDRClusterEnum_total
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class CDRClusterFeatures(rosetta.protocols.features.FeaturesReporter) |
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- Method resolution order:
- CDRClusterFeatures
- rosetta.protocols.features.FeaturesReporter
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(handle) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.antibody.clusters.CDRClusterFeatures, : rosetta.protocols.antibody.clusters.CDRClusterFeatures) -> rosetta.protocols.antibody.clusters.CDRClusterFeatures
- features_reporter_dependencies(...) from builtins.PyCapsule
- features_reporter_dependencies(rosetta.protocols.antibody.clusters.CDRClusterFeatures) -> rosetta.utility.vector1_std_string
- report_features(...) from builtins.PyCapsule
- report_features(self : rosetta.protocols.antibody.clusters.CDRClusterFeatures, pose : rosetta.core.pose.Pose, residues : rosetta.utility.vector1_bool, struct_id : int, db_session : rosetta.utility.sql_database.session) -> int
- set_cdrs_to_use(...) from builtins.PyCapsule
- set_cdrs_to_use(self : rosetta.protocols.antibody.clusters.CDRClusterFeatures, cdrs : rosetta.utility.vector1_protocols_antibody_CDRNameEnum) -> NoneType
Limit CDRs being analyzed.
- set_numbering_scheme(...) from builtins.PyCapsule
- set_numbering_scheme(self : rosetta.protocols.antibody.clusters.CDRClusterFeatures, numbering_scheme : rosetta.protocols.antibody.AntibodyNumberingSchemeEnum) -> NoneType
set the numbering scheme used by the pose.
- type_name(...) from builtins.PyCapsule
- type_name(rosetta.protocols.antibody.clusters.CDRClusterFeatures) -> str
- write_schema_to_db(...) from builtins.PyCapsule
- write_schema_to_db(self : rosetta.protocols.antibody.clusters.CDRClusterFeatures, db_session : rosetta.utility.sql_database.session) -> NoneType
Methods inherited from rosetta.protocols.features.FeaturesReporter:
- check_relevant_residues(...) from builtins.PyCapsule
- check_relevant_residues(*args, **kwargs)
Overloaded function.
1. check_relevant_residues(self : rosetta.protocols.features.FeaturesReporter, relevant_residues : rosetta.utility.vector1_bool, res1 : int) -> bool
2. check_relevant_residues(self : rosetta.protocols.features.FeaturesReporter, relevant_residues : rosetta.utility.vector1_bool, res1 : int, res2 : int) -> bool
3. check_relevant_residues(self : rosetta.protocols.features.FeaturesReporter, relevant_residues : rosetta.utility.vector1_bool, residues : rosetta.utility.vector1_unsigned_long) -> bool
- check_relevant_residues_range(...) from builtins.PyCapsule
- check_relevant_residues_range(self : rosetta.protocols.features.FeaturesReporter, relevant_residues : rosetta.utility.vector1_bool, res1 : int, res2 : int) -> bool
- delete_record(...) from builtins.PyCapsule
- delete_record(self : rosetta.protocols.features.FeaturesReporter, : int, : rosetta.utility.sql_database.session) -> NoneType
- get_relevant_residues_mode(...) from builtins.PyCapsule
- get_relevant_residues_mode(rosetta.protocols.features.FeaturesReporter) -> rosetta.protocols.features.RelevantResiduesMode.T
- load_into_pose(...) from builtins.PyCapsule
- load_into_pose(self : rosetta.protocols.features.FeaturesReporter, : rosetta.utility.sql_database.session, : int, : rosetta.core.pose.Pose) -> NoneType
- schema(...) from builtins.PyCapsule
- schema(rosetta.protocols.features.FeaturesReporter) -> str
return sql statements that sets up the appropriate tables
to contain the features. This should be removed once everything
has been moved to the schema generator
- set_relevant_residues_mode(...) from builtins.PyCapsule
- set_relevant_residues_mode(self : rosetta.protocols.features.FeaturesReporter, setting : rosetta.protocols.features.RelevantResiduesMode.T) -> NoneType
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class CDRClusterMatcher(builtins.object) |
| |
Simple class for identifying CDR clusters of an antibody or protein structure.
Main interface is through CDRClusterSet/AntibodyInfo. That is where AntibodyNumbering can be used to access specific CDRs and numbering scheme transformations.
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| |
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(rosetta.protocols.antibody.clusters.CDRClusterMatcher) -> NoneType
2. __init__(self : rosetta.protocols.antibody.clusters.CDRClusterMatcher, : rosetta.protocols.antibody.clusters.CDRClusterMatcher) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- allow_rama_mismatches(...) from builtins.PyCapsule
- allow_rama_mismatches(*args, **kwargs)
Overloaded function.
1. allow_rama_mismatches(rosetta.protocols.antibody.clusters.CDRClusterMatcher) -> bool
skip first grouping Cis and Trans for clusters in which a Cis/Trans designation currently does not exist.
Default False
2. allow_rama_mismatches(self : rosetta.protocols.antibody.clusters.CDRClusterMatcher, allow : bool) -> NoneType
Set to skip first grouping Cis and Trans for clusters in which a Cis/Trans designation currently does not exist.
Default False
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.antibody.clusters.CDRClusterMatcher, : rosetta.protocols.antibody.clusters.CDRClusterMatcher) -> rosetta.protocols.antibody.clusters.CDRClusterMatcher
- get_cdr_cluster(...) from builtins.PyCapsule
- get_cdr_cluster(self : rosetta.protocols.antibody.clusters.CDRClusterMatcher, pose : rosetta.core.pose.Pose, cdr : rosetta.protocols.antibody.CDRNameEnum, start : int, end : int) -> rosetta.protocols.antibody.clusters.CDRCluster
Get the cluster of an antibody CDR region, defined between start and end of the pose.
Should it give out an OP or not? It's a small class... I don't have any idea...
- get_closest_cluster(...) from builtins.PyCapsule
- get_closest_cluster(self : rosetta.protocols.antibody.clusters.CDRClusterMatcher, pose : rosetta.core.pose.Pose, start : int, end : int) -> rosetta.protocols.antibody.clusters.CDRCluster
Get the closest cluster of a region. Used to detect CDR-like regions in normal proteins.
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class CDRClusterSet(builtins.object) |
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Class that can determine a CDR Cluster, hold that information, and give it out when asked.
|
| |
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(self : rosetta.protocols.antibody.clusters.CDRClusterSet, ab_info : protocols::antibody::AntibodyInfo) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.antibody.clusters.CDRClusterSet, : rosetta.protocols.antibody.clusters.CDRClusterSet) -> rosetta.protocols.antibody.clusters.CDRClusterSet
- clear(...) from builtins.PyCapsule
- clear(*args, **kwargs)
Overloaded function.
1. clear(rosetta.protocols.antibody.clusters.CDRClusterSet) -> NoneType
Clear the held cluster data
2. clear(self : rosetta.protocols.antibody.clusters.CDRClusterSet, cdr : rosetta.protocols.antibody.CDRNameEnum) -> NoneType
Remove data of CDR using normal numbering.
- empty(...) from builtins.PyCapsule
- empty(*args, **kwargs)
Overloaded function.
1. empty(rosetta.protocols.antibody.clusters.CDRClusterSet) -> bool
/////////////////////////////////////////////////////////////////////////
2. empty(self : rosetta.protocols.antibody.clusters.CDRClusterSet, cdr : rosetta.protocols.antibody.CDRNameEnum) -> bool
- get_cacheable_cluster_data(...) from builtins.PyCapsule
- get_cacheable_cluster_data(rosetta.protocols.antibody.clusters.CDRClusterSet) -> protocols::antibody::clusters::BasicCDRClusterSet
Get a new BasicCDRClusterSet with copies of CDRClusters contained in this set.
- get_cluster(...) from builtins.PyCapsule
- get_cluster(self : rosetta.protocols.antibody.clusters.CDRClusterSet, cdr : rosetta.protocols.antibody.CDRNameEnum) -> rosetta.protocols.antibody.clusters.CDRClusterEnum
- get_cluster_data(...) from builtins.PyCapsule
- get_cluster_data(self : rosetta.protocols.antibody.clusters.CDRClusterSet, cdr : rosetta.protocols.antibody.CDRNameEnum) -> rosetta.protocols.antibody.clusters.CDRCluster
- identify_and_set_cdr_cluster(...) from builtins.PyCapsule
- identify_and_set_cdr_cluster(self : rosetta.protocols.antibody.clusters.CDRClusterSet, pose : rosetta.core.pose.Pose, cdr : rosetta.protocols.antibody.CDRNameEnum) -> NoneType
Identify the cluster of the CDR, using numbering information held in AntibodyInfo. Replace data if already present.
- set_cacheable_cluster_data_to_pose(...) from builtins.PyCapsule
- set_cacheable_cluster_data_to_pose(self : rosetta.protocols.antibody.clusters.CDRClusterSet, pose : rosetta.core.pose.Pose) -> NoneType
Set a new BasicCDRClusterSet to a pose with copies of CDRClusters contained in this set.
- set_cluster_data(...) from builtins.PyCapsule
- set_cluster_data(self : rosetta.protocols.antibody.clusters.CDRClusterSet, cdr : rosetta.protocols.antibody.CDRNameEnum, cluster : rosetta.protocols.antibody.clusters.CDRCluster) -> NoneType
Manually set the CDR Cluster
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