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- builtins.object
-
- CPDataCorrespondence
- TrieCountPairBase
- rosetta.basic.datacache.CacheableData(builtins.object)
-
- TrieCollection
- rosetta.core.conformation.AbstractRotamerTrie(builtins.object)
-
- RotamerTrieBase
class CPDataCorrespondence(builtins.object) |
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Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(rosetta.core.scoring.trie.CPDataCorrespondence) -> NoneType
2. __init__(self : rosetta.core.scoring.trie.CPDataCorrespondence, : rosetta.core.scoring.trie.CPDataCorrespondence) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- connid_for_entry_connpoint(...) from builtins.PyCapsule
- connid_for_entry_connpoint(*args, **kwargs)
Overloaded function.
1. connid_for_entry_connpoint(self : rosetta.core.scoring.trie.CPDataCorrespondence, entry : int, connpoint : int, residue_connid : int) -> NoneType
2. connid_for_entry_connpoint(self : rosetta.core.scoring.trie.CPDataCorrespondence, entry : int, connpoint : int) -> int
- has_pseudobonds(...) from builtins.PyCapsule
- has_pseudobonds(rosetta.core.scoring.trie.CPDataCorrespondence) -> bool
- max_connpoints_for_residue(...) from builtins.PyCapsule
- max_connpoints_for_residue(rosetta.core.scoring.trie.CPDataCorrespondence) -> int
- n_connpoints_for_entry(...) from builtins.PyCapsule
- n_connpoints_for_entry(*args, **kwargs)
Overloaded function.
1. n_connpoints_for_entry(self : rosetta.core.scoring.trie.CPDataCorrespondence, entry : int, nconnections : int) -> NoneType
2. n_connpoints_for_entry(self : rosetta.core.scoring.trie.CPDataCorrespondence, entry : int) -> int
- n_entries(...) from builtins.PyCapsule
- n_entries(*args, **kwargs)
Overloaded function.
1. n_entries(self : rosetta.core.scoring.trie.CPDataCorrespondence, nentries : int) -> NoneType
2. n_entries(rosetta.core.scoring.trie.CPDataCorrespondence) -> int
- note_has_pseudobonds(...) from builtins.PyCapsule
- note_has_pseudobonds(rosetta.core.scoring.trie.CPDataCorrespondence) -> NoneType
- resid_for_entry(...) from builtins.PyCapsule
- resid_for_entry(*args, **kwargs)
Overloaded function.
1. resid_for_entry(self : rosetta.core.scoring.trie.CPDataCorrespondence, entry : int, resid : int) -> NoneType
2. resid_for_entry(self : rosetta.core.scoring.trie.CPDataCorrespondence, entry : int) -> int
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class RotamerTrieBase(rosetta.core.conformation.AbstractRotamerTrie) |
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- Method resolution order:
- RotamerTrieBase
- rosetta.core.conformation.AbstractRotamerTrie
- builtins.object
Methods defined here:
- __init__(self, /, *args, **kwargs)
- Initialize self. See help(type(self)) for accurate signature.
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.scoring.trie.RotamerTrieBase, : rosetta.core.scoring.trie.RotamerTrieBase) -> rosetta.core.scoring.trie.RotamerTrieBase
- connection_exists_to_residue(...) from builtins.PyCapsule
- connection_exists_to_residue(self : rosetta.core.scoring.trie.RotamerTrieBase, resid : int) -> bool
- connection_id_for_residue(...) from builtins.PyCapsule
- connection_id_for_residue(self : rosetta.core.scoring.trie.RotamerTrieBase, resid : int) -> int
- get_count_pair_data_for_residue(...) from builtins.PyCapsule
- get_count_pair_data_for_residue(self : rosetta.core.scoring.trie.RotamerTrieBase, other_residue : int) -> int
- print(...) from builtins.PyCapsule
- print(rosetta.core.scoring.trie.RotamerTrieBase) -> NoneType
Useful Functions
- resolve_trie_vs_path(...) from builtins.PyCapsule
- resolve_trie_vs_path(*args, **kwargs)
Overloaded function.
1. resolve_trie_vs_path(self : rosetta.core.scoring.trie.RotamerTrieBase, other : rosetta.core.scoring.trie.RotamerTrieBase, cp : core::scoring::trie::TrieCountPairBase, sfxn : core::scoring::etable::TableLookupEvaluator, pair_energy_vector : rosetta.utility.vector1_float, temp_vector : rosetta.utility.vector1_float) -> NoneType
This function is called when the etable energy function get mixed up with non-etable tries.
It produces a utility_exit call.
2. resolve_trie_vs_path(self : rosetta.core.scoring.trie.RotamerTrieBase, other : rosetta.core.scoring.trie.RotamerTrieBase, cp : core::scoring::trie::TrieCountPairBase, sfxn : core::scoring::etable::AnalyticEtableEvaluator, pair_energy_vector : rosetta.utility.vector1_float, temp_vector : rosetta.utility.vector1_float) -> NoneType
This function is called when the coarse etable energy function get mixed up with non-etable tries.
It produces a utility_exit call.
3. resolve_trie_vs_path(self : rosetta.core.scoring.trie.RotamerTrieBase, other : rosetta.core.scoring.trie.RotamerTrieBase, cp : core::scoring::trie::TrieCountPairBase, sfxn : core::scoring::hbonds::HBondEnergy, pair_energy_vector : rosetta.utility.vector1_float, temp_vector : rosetta.utility.vector1_float) -> NoneType
This function is called when hbond energy function gets mixed up with non-hbond tries.
It produces a utility_exit call.
4. resolve_trie_vs_path(self : rosetta.core.scoring.trie.RotamerTrieBase, other : rosetta.core.scoring.trie.RotamerTrieBase, cp : core::scoring::trie::TrieCountPairBase, sfxn : rosetta.core.scoring.elec.FA_ElecEnergy, pair_energy_vector : rosetta.utility.vector1_float, temp_vector : rosetta.utility.vector1_float) -> NoneType
This function is called when non-elec tries get mixed up with the FA_ElecEnergy function
It produces a utility_exit call.
5. resolve_trie_vs_path(self : rosetta.core.scoring.trie.RotamerTrieBase, other : rosetta.core.scoring.trie.RotamerTrieBase, cp : core::scoring::trie::TrieCountPairBase, sfxn : rosetta.core.scoring.lkball.lkbtrie.LKBTrieEvaluator, pair_energy_vector : rosetta.utility.vector1_float, temp_vector : rosetta.utility.vector1_float) -> NoneType
This function is called when non-elec tries get mixed up with the FA_ElecEnergy function
It produces a utility_exit call.
6. resolve_trie_vs_path(self : rosetta.core.scoring.trie.RotamerTrieBase, other : rosetta.core.scoring.trie.RotamerTrieBase, cp : core::scoring::trie::TrieCountPairBase, sfxn : core::scoring::methods::MMLJEnergyInter, pair_energy_vector : rosetta.utility.vector1_float, temp_vector : rosetta.utility.vector1_float) -> NoneType
This function is called when the mm lj inter energy function get mixed up with other tries.
It produces a utility_exit call.
7. resolve_trie_vs_path(self : rosetta.core.scoring.trie.RotamerTrieBase, other : rosetta.core.scoring.trie.RotamerTrieBase, cp : core::scoring::trie::TrieCountPairBase, sfxn : core::scoring::vdwaals::VDWTrieEvaluator, pair_energy_vector : rosetta.utility.vector1_float, temp_vector : rosetta.utility.vector1_float) -> NoneType
This function is called when the mm lj inter energy function get mixed up with other tries.
It produces a utility_exit call.
- resolve_trie_vs_trie(...) from builtins.PyCapsule
- resolve_trie_vs_trie(*args, **kwargs)
Overloaded function.
1. resolve_trie_vs_trie(self : rosetta.core.scoring.trie.RotamerTrieBase, other : rosetta.core.scoring.trie.RotamerTrieBase, cp : core::scoring::trie::TrieCountPairBase, sfxn : core::scoring::etable::TableLookupEvaluator, pair_energy_table : ObjexxFCL::FArray2D<float>, temp_table : ObjexxFCL::FArray2D<float>) -> NoneType
This function is called when the etable energy function get mixed up with non-etable tries.
It produces a utility_exit call.
2. resolve_trie_vs_trie(self : rosetta.core.scoring.trie.RotamerTrieBase, other : rosetta.core.scoring.trie.RotamerTrieBase, cp : core::scoring::trie::TrieCountPairBase, sfxn : core::scoring::etable::AnalyticEtableEvaluator, pair_energy_table : ObjexxFCL::FArray2D<float>, temp_table : ObjexxFCL::FArray2D<float>) -> NoneType
This function is called when the coarse etable energy function get mixed up with non-etable tries.
It produces a utility_exit call.
3. resolve_trie_vs_trie(self : rosetta.core.scoring.trie.RotamerTrieBase, other : rosetta.core.scoring.trie.RotamerTrieBase, cp : core::scoring::trie::TrieCountPairBase, sfxn : core::scoring::hbonds::HBondEnergy, pair_energy_table : ObjexxFCL::FArray2D<float>, temp_table : ObjexxFCL::FArray2D<float>) -> NoneType
This function is called when hbond energy function get mixed up with non-hbond tries.
It produces a utility_exit call.
4. resolve_trie_vs_trie(self : rosetta.core.scoring.trie.RotamerTrieBase, other : rosetta.core.scoring.trie.RotamerTrieBase, cp : core::scoring::trie::TrieCountPairBase, sfxn : rosetta.core.scoring.elec.FA_ElecEnergy, pair_energy_table : ObjexxFCL::FArray2D<float>, temp_table : ObjexxFCL::FArray2D<float>) -> NoneType
This function is called when the etable energy function get mixed up with non-etable tries.
It produces a utility_exit call.
5. resolve_trie_vs_trie(self : rosetta.core.scoring.trie.RotamerTrieBase, other : rosetta.core.scoring.trie.RotamerTrieBase, cp : core::scoring::trie::TrieCountPairBase, sfxn : rosetta.core.scoring.lkball.lkbtrie.LKBTrieEvaluator, pair_energy_table : ObjexxFCL::FArray2D<float>, temp_table : ObjexxFCL::FArray2D<float>) -> NoneType
This function is called when the etable energy function get mixed up with non-etable tries.
It produces a utility_exit call.
6. resolve_trie_vs_trie(self : rosetta.core.scoring.trie.RotamerTrieBase, other : rosetta.core.scoring.trie.RotamerTrieBase, cp : core::scoring::trie::TrieCountPairBase, sfxn : core::scoring::methods::MMLJEnergyInter, pair_energy_table : ObjexxFCL::FArray2D<float>, temp_table : ObjexxFCL::FArray2D<float>) -> NoneType
This function is called when the mm lj inter energy function get mixed up with other tries.
It produces a utility_exit call.
7. resolve_trie_vs_trie(self : rosetta.core.scoring.trie.RotamerTrieBase, other : rosetta.core.scoring.trie.RotamerTrieBase, cp : core::scoring::trie::TrieCountPairBase, sfxn : core::scoring::vdwaals::VDWTrieEvaluator, pair_energy_table : ObjexxFCL::FArray2D<float>, temp_table : ObjexxFCL::FArray2D<float>) -> NoneType
This function is called when the mm lj inter energy function get mixed up with other tries.
It produces a utility_exit call.
- set_resid_2_connection_entry(...) from builtins.PyCapsule
- set_resid_2_connection_entry(self : rosetta.core.scoring.trie.RotamerTrieBase, resid : int, connid : int) -> NoneType
- trie_vs_path(...) from builtins.PyCapsule
- trie_vs_path(*args, **kwargs)
Overloaded function.
1. trie_vs_path(self : rosetta.core.scoring.trie.RotamerTrieBase, other : rosetta.core.scoring.trie.RotamerTrieBase, cp : core::scoring::trie::TrieCountPairBase, sfxn : core::scoring::etable::TableLookupEvaluator, pair_energy_vector : rosetta.utility.vector1_float, temp_vector : rosetta.utility.vector1_float) -> NoneType
Four trie-vs-path type resolution functions
2. trie_vs_path(self : rosetta.core.scoring.trie.RotamerTrieBase, other : rosetta.core.scoring.trie.RotamerTrieBase, cp : core::scoring::trie::TrieCountPairBase, sfxn : core::scoring::etable::AnalyticEtableEvaluator, pair_energy_vector : rosetta.utility.vector1_float, temp_vector : rosetta.utility.vector1_float) -> NoneType
Four trie-vs-path type resolution functions
3. trie_vs_path(self : rosetta.core.scoring.trie.RotamerTrieBase, other : rosetta.core.scoring.trie.RotamerTrieBase, cp : core::scoring::trie::TrieCountPairBase, sfxn : core::scoring::hbonds::HBondEnergy, pair_energy_vector : rosetta.utility.vector1_float, temp_vector : rosetta.utility.vector1_float) -> NoneType
4. trie_vs_path(self : rosetta.core.scoring.trie.RotamerTrieBase, other : rosetta.core.scoring.trie.RotamerTrieBase, cp : core::scoring::trie::TrieCountPairBase, sfxn : rosetta.core.scoring.elec.FA_ElecEnergy, pair_energy_vector : rosetta.utility.vector1_float, temp_vector : rosetta.utility.vector1_float) -> NoneType
Four trie-vs-path type resolution functions
5. trie_vs_path(self : rosetta.core.scoring.trie.RotamerTrieBase, other : rosetta.core.scoring.trie.RotamerTrieBase, cp : core::scoring::trie::TrieCountPairBase, sfxn : rosetta.core.scoring.lkball.lkbtrie.LKBTrieEvaluator, pair_energy_vector : rosetta.utility.vector1_float, temp_vector : rosetta.utility.vector1_float) -> NoneType
Four trie-vs-path type resolution functions
6. trie_vs_path(self : rosetta.core.scoring.trie.RotamerTrieBase, other : rosetta.core.scoring.trie.RotamerTrieBase, cp : core::scoring::trie::TrieCountPairBase, sfxn : core::scoring::methods::MMLJEnergyInter, pair_energy_vector : rosetta.utility.vector1_float, temp_vector : rosetta.utility.vector1_float) -> NoneType
Four trie-vs-path type resolution functions
7. trie_vs_path(self : rosetta.core.scoring.trie.RotamerTrieBase, other : rosetta.core.scoring.trie.RotamerTrieBase, cp : core::scoring::trie::TrieCountPairBase, sfxn : core::scoring::vdwaals::VDWTrieEvaluator, pair_energy_vector : rosetta.utility.vector1_float, temp_vector : rosetta.utility.vector1_float) -> NoneType
Four trie-vs-path type resolution functions
- trie_vs_trie(...) from builtins.PyCapsule
- trie_vs_trie(*args, **kwargs)
Overloaded function.
1. trie_vs_trie(self : rosetta.core.scoring.trie.RotamerTrieBase, other : rosetta.core.scoring.trie.RotamerTrieBase, cp : core::scoring::trie::TrieCountPairBase, sfxn : core::scoring::etable::TableLookupEvaluator, pair_energy_table : ObjexxFCL::FArray2D<float>, temp_table : ObjexxFCL::FArray2D<float>) -> NoneType
2. trie_vs_trie(self : rosetta.core.scoring.trie.RotamerTrieBase, other : rosetta.core.scoring.trie.RotamerTrieBase, cp : core::scoring::trie::TrieCountPairBase, sfxn : core::scoring::etable::AnalyticEtableEvaluator, pair_energy_table : ObjexxFCL::FArray2D<float>, temp_table : ObjexxFCL::FArray2D<float>) -> NoneType
/////////////////////////////////////////////////////////////////////////////////////////
///////// the same methods again --- overloaded to accept a AnalyticEnergyEvaluator /////
/////////////////////////////////////////////////////////////////////////////////////////
3. trie_vs_trie(self : rosetta.core.scoring.trie.RotamerTrieBase, other : rosetta.core.scoring.trie.RotamerTrieBase, cp : core::scoring::trie::TrieCountPairBase, sfxn : core::scoring::hbonds::HBondEnergy, pair_energy_table : ObjexxFCL::FArray2D<float>, temp_table : ObjexxFCL::FArray2D<float>) -> NoneType
/ The same methods, again, for the HBondEnergies
4. trie_vs_trie(self : rosetta.core.scoring.trie.RotamerTrieBase, other : rosetta.core.scoring.trie.RotamerTrieBase, cp : core::scoring::trie::TrieCountPairBase, sfxn : rosetta.core.scoring.elec.FA_ElecEnergy, pair_energy_table : ObjexxFCL::FArray2D<float>, temp_table : ObjexxFCL::FArray2D<float>) -> NoneType
The same methods again, for Hack Elec E
5. trie_vs_trie(self : rosetta.core.scoring.trie.RotamerTrieBase, other : rosetta.core.scoring.trie.RotamerTrieBase, cp : core::scoring::trie::TrieCountPairBase, sfxn : rosetta.core.scoring.lkball.lkbtrie.LKBTrieEvaluator, pair_energy_table : ObjexxFCL::FArray2D<float>, temp_table : ObjexxFCL::FArray2D<float>) -> NoneType
////////////////////////////////////////////////////////////////////////////////////
///////// LKBALL
////////////////////////////////////////////////////////////////////////////////////
6. trie_vs_trie(self : rosetta.core.scoring.trie.RotamerTrieBase, other : rosetta.core.scoring.trie.RotamerTrieBase, cp : core::scoring::trie::TrieCountPairBase, sfxn : core::scoring::methods::MMLJEnergyInter, pair_energy_table : ObjexxFCL::FArray2D<float>, temp_table : ObjexxFCL::FArray2D<float>) -> NoneType
////////////////////////////////////////////////////////////////////////////////////
///////// the same methods again --- overloaded for MMLJEnergyTable ////////////////
////////////////////////////////////////////////////////////////////////////////////
7. trie_vs_trie(self : rosetta.core.scoring.trie.RotamerTrieBase, other : rosetta.core.scoring.trie.RotamerTrieBase, cp : core::scoring::trie::TrieCountPairBase, sfxn : core::scoring::vdwaals::VDWTrieEvaluator, pair_energy_table : ObjexxFCL::FArray2D<float>, temp_table : ObjexxFCL::FArray2D<float>) -> NoneType
////////////////////////////////////////////////////////////////////////////////////
///////// the same methods again --- overloaded for VDW_Energy /////////////////////
////////////////////////////////////////////////////////////////////////////////////
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class TrieCollection(rosetta.basic.datacache.CacheableData) |
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- Method resolution order:
- TrieCollection
- rosetta.basic.datacache.CacheableData
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle, rosetta.core.scoring.trie.TrieCollection) -> NoneType
2. __init__(handle) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.scoring.trie.TrieCollection, : rosetta.core.scoring.trie.TrieCollection) -> rosetta.core.scoring.trie.TrieCollection
- clone(...) from builtins.PyCapsule
- clone(rosetta.core.scoring.trie.TrieCollection) -> rosetta.basic.datacache.CacheableData
- total_residue(...) from builtins.PyCapsule
- total_residue(*args, **kwargs)
Overloaded function.
1. total_residue(self : rosetta.core.scoring.trie.TrieCollection, : int) -> NoneType
2. total_residue(rosetta.core.scoring.trie.TrieCollection) -> int
- trie(...) from builtins.PyCapsule
- trie(*args, **kwargs)
Overloaded function.
1. trie(self : rosetta.core.scoring.trie.TrieCollection, index : int) -> rosetta.core.scoring.trie.RotamerTrieBase
2. trie(self : rosetta.core.scoring.trie.TrieCollection, index : int, new_trie : rosetta.core.scoring.trie.RotamerTrieBase) -> NoneType
Methods inherited from rosetta.basic.datacache.CacheableData:
- get_self_ptr(...) from builtins.PyCapsule
- get_self_ptr(*args, **kwargs)
Overloaded function.
1. get_self_ptr(rosetta.basic.datacache.CacheableData) -> rosetta.basic.datacache.CacheableData
self pointers
2. get_self_ptr(rosetta.basic.datacache.CacheableData) -> rosetta.basic.datacache.CacheableData
- get_self_weak_ptr(...) from builtins.PyCapsule
- get_self_weak_ptr(*args, **kwargs)
Overloaded function.
1. get_self_weak_ptr(rosetta.basic.datacache.CacheableData) -> rosetta.std.weak_ptr_const_basic_datacache_CacheableData_t
2. get_self_weak_ptr(rosetta.basic.datacache.CacheableData) -> rosetta.std.weak_ptr_basic_datacache_CacheableData_t
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