Bindings for core::scoring::packstat namespace

Modules
		rosetta.core.scoring.packstat.old

Classes
		builtins.object Accumulator AreaAccumulator MultiProbePerSphereAccumulator MultiProbePoseAccumulator PerSphereAccumulator Array2D AtomRadiusMap CavityBall CavityBallCluster Circle Event EventType LR_AtomData LR_MP_AtomData LeeRichards Octree2D OrderCBC PackingScore PackingScoreResData Point PointPair PosePackData SasaOptions SasaResult SimplePDB SimplePDB_Atom Slice Sphere trace   class Accumulator(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.scoring.packstat.Accumulator) -> NoneType   2. __init__(rosetta.core.scoring.packstat.Accumulator, rosetta.core.scoring.packstat.Accumulator) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. accumulate_area(...) from builtins.PyCapsule accumulate_area(self : rosetta.core.scoring.packstat.Accumulator, atom : rosetta.core.id.AtomID, area : float, buried : bool) -> NoneType accumulate_dxdy(...) from builtins.PyCapsule accumulate_dxdy(self : rosetta.core.scoring.packstat.Accumulator, atom : rosetta.core.id.AtomID, dx : float, dy : float, buried : bool) -> NoneType assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.packstat.Accumulator,  : rosetta.core.scoring.packstat.Accumulator) -> rosetta.core.scoring.packstat.Accumulator   class AreaAccumulator(Accumulator)       Method resolution order: AreaAccumulator Accumulator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. accumulate_area(...) from builtins.PyCapsule accumulate_area(self : rosetta.core.scoring.packstat.AreaAccumulator,  : rosetta.core.id.AtomID, area : float, buried : bool) -> NoneType accumulate_dxdy(...) from builtins.PyCapsule accumulate_dxdy(self : rosetta.core.scoring.packstat.AreaAccumulator,  : rosetta.core.id.AtomID,  : float,  : float,  : bool) -> NoneType assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.packstat.AreaAccumulator,  : rosetta.core.scoring.packstat.AreaAccumulator) -> rosetta.core.scoring.packstat.AreaAccumulator reset(...) from builtins.PyCapsule reset(rosetta.core.scoring.packstat.AreaAccumulator) -> NoneType Data descriptors defined here: buried_area total_area   class Array2D(builtins.object)       Methods defined here: __call__(...) from builtins.PyCapsule __call__(self : rosetta.core.scoring.packstat.Array2D, i : int, j : int) -> rosetta.utility.vector1_core_scoring_packstat_Circle_* __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.scoring.packstat.Array2D) -> NoneType   2. __init__(self : rosetta.core.scoring.packstat.Array2D,  : rosetta.core.scoring.packstat.Array2D) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.packstat.Array2D,  : rosetta.core.scoring.packstat.Array2D) -> rosetta.core.scoring.packstat.Array2D init(...) from builtins.PyCapsule init(self : rosetta.core.scoring.packstat.Array2D, Nx : int, Ny : int) -> NoneType Data descriptors defined here: Nx_ Ny_   class AtomRadiusMap(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.scoring.packstat.AtomRadiusMap) -> NoneType   doc   2. __init__(self : rosetta.core.scoring.packstat.AtomRadiusMap, include_water : int) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. get_radius(...) from builtins.PyCapsule get_radius(self : rosetta.core.scoring.packstat.AtomRadiusMap, type : str, res : str) -> float   class CavityBall(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(self : rosetta.core.scoring.packstat.CavityBall, id : int, sphere : int, xyz : rosetta.numeric.xyzVector_double_t, r : float) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. hetero_atom_line(...) from builtins.PyCapsule hetero_atom_line(*args, **kwargs) Overloaded function.   1. hetero_atom_line(rosetta.core.scoring.packstat.CavityBall) -> str   2. hetero_atom_line(self : rosetta.core.scoring.packstat.CavityBall, hetresnum : int) -> str   3. hetero_atom_line(self : rosetta.core.scoring.packstat.CavityBall, hetresnum : int, chain : int) -> str   4. hetero_atom_line(self : rosetta.core.scoring.packstat.CavityBall, hetresnum : int, chain : int, radsub : float) -> str id(...) from builtins.PyCapsule id(rosetta.core.scoring.packstat.CavityBall) -> int radius(...) from builtins.PyCapsule radius(rosetta.core.scoring.packstat.CavityBall) -> float sphere(...) from builtins.PyCapsule sphere(rosetta.core.scoring.packstat.CavityBall) -> int str(...) from builtins.PyCapsule str(rosetta.core.scoring.packstat.CavityBall) -> str xyz(...) from builtins.PyCapsule xyz(rosetta.core.scoring.packstat.CavityBall) -> rosetta.numeric.xyzVector_double_t Data descriptors defined here: anb area cluster_ evdw exposed_radius id_ radius_ sphere_ vol xyz_   class CavityBallCluster(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(rosetta.core.scoring.packstat.CavityBallCluster) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. Data descriptors defined here: cavballs center surface_accessibility surface_area volume   class Circle(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(self : rosetta.core.scoring.packstat.Circle, _x : float, _y : float, _r : float, _drdz : float, _dada : float, _atom_id : rosetta.core.id.AtomID) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. contains(...) from builtins.PyCapsule contains(self : rosetta.core.scoring.packstat.Circle, _x : float, _y : float) -> bool does_overlap(...) from builtins.PyCapsule does_overlap(self : rosetta.core.scoring.packstat.Circle, other : rosetta.core.scoring.packstat.Circle) -> bool overlap(...) from builtins.PyCapsule overlap(self : rosetta.core.scoring.packstat.Circle, other : rosetta.core.scoring.packstat.Circle) -> rosetta.core.scoring.packstat.PointPair Data descriptors defined here: atom dada drdz r x y   class Event(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.scoring.packstat.Event, float, float, rosetta.core.scoring.packstat.EventType, rosetta.core.scoring.packstat.Circle) -> NoneType   doc   2. __init__(self : rosetta.core.scoring.packstat.Event, _x : float, _y : float, _kind : rosetta.core.scoring.packstat.EventType, _circle : rosetta.core.scoring.packstat.Circle, _ccw : rosetta.core.scoring.packstat.Circle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. cmp(...) from builtins.PyCapsule cmp(self : rosetta.core.scoring.packstat.Event, other : rosetta.core.scoring.packstat.Event) -> int Data descriptors defined here: ccw_angle cw_angle kind x y   class EventType(builtins.object)       Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(rosetta.core.scoring.packstat.EventType, rosetta.core.scoring.packstat.EventType) -> bool __hash__(...) from builtins.PyCapsule __hash__(rosetta.core.scoring.packstat.EventType) -> int __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.scoring.packstat.EventType, int) -> NoneType   2. __init__(rosetta.core.scoring.packstat.EventType, int) -> NoneType __int__(...) from builtins.PyCapsule __int__(rosetta.core.scoring.packstat.EventType) -> int __ne__(...) from builtins.PyCapsule __ne__(rosetta.core.scoring.packstat.EventType, rosetta.core.scoring.packstat.EventType) -> bool __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. __repr__(...) from builtins.PyCapsule __repr__(rosetta.core.scoring.packstat.EventType) -> str Data and other attributes defined here: ENTER = EventType.ENTER EXIT = EventType.EXIT ISECT = EventType.ISECT   class LR_AtomData(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.scoring.packstat.LR_AtomData) -> NoneType   2. __init__(self : rosetta.core.scoring.packstat.LR_AtomData,  : rosetta.core.scoring.packstat.LR_AtomData) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.packstat.LR_AtomData,  : rosetta.core.scoring.packstat.LR_AtomData) -> rosetta.core.scoring.packstat.LR_AtomData Data descriptors defined here: area dx dy   class LR_MP_AtomData(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.scoring.packstat.LR_MP_AtomData) -> NoneType   2. __init__(self : rosetta.core.scoring.packstat.LR_MP_AtomData,  : rosetta.core.scoring.packstat.LR_MP_AtomData) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.packstat.LR_MP_AtomData,  : rosetta.core.scoring.packstat.LR_MP_AtomData) -> rosetta.core.scoring.packstat.LR_MP_AtomData Data descriptors defined here: area barea bdx bdy dx dy   class LeeRichards(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.scoring.packstat.LeeRichards, rosetta.core.scoring.packstat.PosePackData, rosetta.core.scoring.packstat.Accumulator) -> NoneType   doc   2. __init__(rosetta.core.scoring.packstat.LeeRichards, rosetta.core.scoring.packstat.PosePackData, rosetta.core.scoring.packstat.Accumulator, float) -> NoneType   doc   3. __init__(rosetta.core.scoring.packstat.LeeRichards, rosetta.core.scoring.packstat.PosePackData, rosetta.core.scoring.packstat.Accumulator, float, float) -> NoneType   doc   4. __init__(rosetta.core.scoring.packstat.LeeRichards, rosetta.core.scoring.packstat.PosePackData, rosetta.core.scoring.packstat.Accumulator, float, float, bool) -> NoneType   doc   5. __init__(self : rosetta.core.scoring.packstat.LeeRichards, pd : rosetta.core.scoring.packstat.PosePackData, accum : rosetta.core.scoring.packstat.Accumulator, spacing : float, probe_radius : float, csa : bool, plane : rosetta.numeric.xyzVector_double_t) -> NoneType   6. __init__(rosetta.core.scoring.packstat.LeeRichards, rosetta.core.pose.Pose, rosetta.core.scoring.packstat.Accumulator) -> NoneType   doc   7. __init__(rosetta.core.scoring.packstat.LeeRichards, rosetta.core.pose.Pose, rosetta.core.scoring.packstat.Accumulator, float) -> NoneType   doc   8. __init__(rosetta.core.scoring.packstat.LeeRichards, rosetta.core.pose.Pose, rosetta.core.scoring.packstat.Accumulator, float, float) -> NoneType   doc   9. __init__(rosetta.core.scoring.packstat.LeeRichards, rosetta.core.pose.Pose, rosetta.core.scoring.packstat.Accumulator, float, float, bool) -> NoneType   doc   10. __init__(self : rosetta.core.scoring.packstat.LeeRichards, pose : rosetta.core.pose.Pose, accum : rosetta.core.scoring.packstat.Accumulator, spacing : float, probe_radius : float, csa : bool, plane : rosetta.numeric.xyzVector_double_t) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. find_first_slice(...) from builtins.PyCapsule find_first_slice(self : rosetta.core.scoring.packstat.LeeRichards, r : float) -> int get_surface_area(...) from builtins.PyCapsule get_surface_area(rosetta.core.scoring.packstat.LeeRichards) -> float   class MultiProbePerSphereAccumulator(Accumulator)       Method resolution order: MultiProbePerSphereAccumulator Accumulator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(self : handle, pd : rosetta.core.scoring.packstat.PosePackData) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. accumulate_area(...) from builtins.PyCapsule accumulate_area(self : rosetta.core.scoring.packstat.MultiProbePerSphereAccumulator, id : rosetta.core.id.AtomID, area : float,  : bool) -> NoneType accumulate_dxdy(...) from builtins.PyCapsule accumulate_dxdy(self : rosetta.core.scoring.packstat.MultiProbePerSphereAccumulator, id : rosetta.core.id.AtomID, dx : float, dy : float,  : bool) -> NoneType assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.packstat.MultiProbePerSphereAccumulator,  : rosetta.core.scoring.packstat.MultiProbePerSphereAccumulator) -> rosetta.core.scoring.packstat.MultiProbePerSphereAccumulator compute_surrounding_sasa(...) from builtins.PyCapsule compute_surrounding_sasa(self : rosetta.core.scoring.packstat.MultiProbePerSphereAccumulator, center : rosetta.numeric.xyzVector_double_t) -> rosetta.core.scoring.packstat.PackingScoreResData get_pr_idx(...) from builtins.PyCapsule get_pr_idx(rosetta.core.scoring.packstat.MultiProbePerSphereAccumulator) -> int set_pr_idx(...) from builtins.PyCapsule set_pr_idx(self : rosetta.core.scoring.packstat.MultiProbePerSphereAccumulator, pr_idx : int) -> NoneType Data descriptors defined here: atom_map_ pd_ pr_idx_   class MultiProbePoseAccumulator(Accumulator)       Method resolution order: MultiProbePoseAccumulator Accumulator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle, rosetta.core.pose.Pose) -> NoneType   doc   2. __init__(self : handle, _pose : rosetta.core.pose.Pose, tag : str) -> NoneType   3. __init__(handle, rosetta.core.scoring.packstat.MultiProbePoseAccumulator) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. accumulate_area(...) from builtins.PyCapsule accumulate_area(self : rosetta.core.scoring.packstat.MultiProbePoseAccumulator, id : rosetta.core.id.AtomID, area : float, buried : bool) -> NoneType accumulate_dxdy(...) from builtins.PyCapsule accumulate_dxdy(self : rosetta.core.scoring.packstat.MultiProbePoseAccumulator, id : rosetta.core.id.AtomID, dx : float, dy : float, buried : bool) -> NoneType assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.packstat.MultiProbePoseAccumulator,  : rosetta.core.scoring.packstat.MultiProbePoseAccumulator) -> rosetta.core.scoring.packstat.MultiProbePoseAccumulator get_pr_idx(...) from builtins.PyCapsule get_pr_idx(rosetta.core.scoring.packstat.MultiProbePoseAccumulator) -> int set_pr_idx(...) from builtins.PyCapsule set_pr_idx(self : rosetta.core.scoring.packstat.MultiProbePoseAccumulator, pr_idx : int) -> NoneType Data descriptors defined here: atom_map_ pose_ pr_idx_ tag_   class Octree2D(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(self : rosetta.core.scoring.packstat.Octree2D, items : rosetta.utility.vector1_core_scoring_packstat_Circle_*) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. contains(...) from builtins.PyCapsule contains(*args, **kwargs) Overloaded function.   1. contains(self : rosetta.core.scoring.packstat.Octree2D, x : float, y : float) -> bool   2. contains(self : rosetta.core.scoring.packstat.Octree2D, x : float, y : float, extend : int) -> bool   3. contains(self : rosetta.core.scoring.packstat.Octree2D, x : float, y : float, extend : int, exclude1 : rosetta.core.scoring.packstat.Circle) -> bool   4. contains(self : rosetta.core.scoring.packstat.Octree2D, x : float, y : float, extend : int, exclude1 : rosetta.core.scoring.packstat.Circle, exclude2 : rosetta.core.scoring.packstat.Circle) -> bool get_cube(...) from builtins.PyCapsule get_cube(self : rosetta.core.scoring.packstat.Octree2D, a : rosetta.core.scoring.packstat.Circle) -> rosetta.utility.vector1_core_scoring_packstat_Circle_* get_i(...) from builtins.PyCapsule get_i(self : rosetta.core.scoring.packstat.Octree2D, x : float) -> int get_j(...) from builtins.PyCapsule get_j(self : rosetta.core.scoring.packstat.Octree2D, y : float) -> int Data descriptors defined here: Xdim_ Ydim_ cubes mnx_ mny_ mxr_ mxx_ mxy_   class OrderCBC(builtins.object)       Methods defined here: __call__(...) from builtins.PyCapsule __call__(self : rosetta.core.scoring.packstat.OrderCBC, a : rosetta.core.scoring.packstat.CavityBallCluster, b : rosetta.core.scoring.packstat.CavityBallCluster) -> bool __init__(...) from builtins.PyCapsule __init__(rosetta.core.scoring.packstat.OrderCBC) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature.   class PackingScore(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(self : rosetta.core.scoring.packstat.PackingScore, nrad : int, npr : int,  : bool) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. center(...) from builtins.PyCapsule center(*args, **kwargs) Overloaded function.   1. center(self : rosetta.core.scoring.packstat.PackingScore, rad : int, pr : int) -> float   2. center(self : rosetta.core.scoring.packstat.PackingScore, rad : int, pr : int) -> float compprob(...) from builtins.PyCapsule compprob(*args, **kwargs) Overloaded function.   1. compprob(rosetta.core.scoring.packstat.PackingScore) -> bool   2. compprob(rosetta.core.scoring.packstat.PackingScore) -> bool npr(...) from builtins.PyCapsule npr(rosetta.core.scoring.packstat.PackingScore) -> int nrad(...) from builtins.PyCapsule nrad(rosetta.core.scoring.packstat.PackingScore) -> int probA(...) from builtins.PyCapsule probA(*args, **kwargs) Overloaded function.   1. probA(rosetta.core.scoring.packstat.PackingScore) -> float   2. probA(rosetta.core.scoring.packstat.PackingScore) -> float probB(...) from builtins.PyCapsule probB(*args, **kwargs) Overloaded function.   1. probB(rosetta.core.scoring.packstat.PackingScore) -> float   2. probB(rosetta.core.scoring.packstat.PackingScore) -> float rho(...) from builtins.PyCapsule rho(*args, **kwargs) Overloaded function.   1. rho(rosetta.core.scoring.packstat.PackingScore) -> float   2. rho(rosetta.core.scoring.packstat.PackingScore) -> float score(...) from builtins.PyCapsule score(self : rosetta.core.scoring.packstat.PackingScore, dat : rosetta.core.scoring.packstat.PackingScoreResData) -> float weight(...) from builtins.PyCapsule weight(*args, **kwargs) Overloaded function.   1. weight(self : rosetta.core.scoring.packstat.PackingScore, rad : int, pr : int) -> float   2. weight(self : rosetta.core.scoring.packstat.PackingScore, rad : int, pr : int) -> float   class PackingScoreResData(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : rosetta.core.scoring.packstat.PackingScoreResData, nrad : int, npr : int) -> NoneType   2. __init__(self : rosetta.core.scoring.packstat.PackingScoreResData,  : rosetta.core.scoring.packstat.PackingScoreResData) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.packstat.PackingScoreResData) -> str msa(...) from builtins.PyCapsule msa(*args, **kwargs) Overloaded function.   1. msa(self : rosetta.core.scoring.packstat.PackingScoreResData, rad : int, pr : int) -> float   2. msa(self : rosetta.core.scoring.packstat.PackingScoreResData, rad : int, pr : int) -> float npr(...) from builtins.PyCapsule npr(rosetta.core.scoring.packstat.PackingScoreResData) -> int nrad(...) from builtins.PyCapsule nrad(rosetta.core.scoring.packstat.PackingScoreResData) -> int   class PerSphereAccumulator(Accumulator)       Method resolution order: PerSphereAccumulator Accumulator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(self : handle, spheres : rosetta.utility.vector1_core_scoring_packstat_Sphere) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. accumulate_area(...) from builtins.PyCapsule accumulate_area(self : rosetta.core.scoring.packstat.PerSphereAccumulator, id : rosetta.core.id.AtomID, area : float,  : bool) -> NoneType accumulate_dxdy(...) from builtins.PyCapsule accumulate_dxdy(self : rosetta.core.scoring.packstat.PerSphereAccumulator, id : rosetta.core.id.AtomID, dx : float, dy : float,  : bool) -> NoneType assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.packstat.PerSphereAccumulator,  : rosetta.core.scoring.packstat.PerSphereAccumulator) -> rosetta.core.scoring.packstat.PerSphereAccumulator Data descriptors defined here: atom_map_   class Point(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : rosetta.core.scoring.packstat.Point, _x : float, _y : float) -> NoneType   2. __init__(self : rosetta.core.scoring.packstat.Point,  : rosetta.core.scoring.packstat.Point) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. Data descriptors defined here: x y   class PointPair(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(self : rosetta.core.scoring.packstat.PointPair, x0 : float, y0 : float, x1 : float, y1 : float) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. Data descriptors defined here: a b   class PosePackData(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(rosetta.core.scoring.packstat.PosePackData) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.packstat.PosePackData,  : rosetta.core.scoring.packstat.PosePackData) -> rosetta.core.scoring.packstat.PosePackData Data descriptors defined here: centers labels spheres   class SasaOptions(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.scoring.packstat.SasaOptions) -> NoneType   2. __init__(self : rosetta.core.scoring.packstat.SasaOptions,  : rosetta.core.scoring.packstat.SasaOptions) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.packstat.SasaOptions,  : rosetta.core.scoring.packstat.SasaOptions) -> rosetta.core.scoring.packstat.SasaOptions Data descriptors defined here: area_cav_ball_required_exposed cluster_min_volume dont_compute_cav_balls frac_cav_ball_required_exposed min_cav_ball_radius min_cluster_overlap min_hole_radius num_cav_ball_layers num_surrounding_sasa_bins probe_radii prune_cavity_burial_probe_radii prune_max_delta prune_max_iters surrounding_sasa_smoothing_window   class SasaResult(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : rosetta.core.scoring.packstat.SasaResult, Nprobes : int, Nspheres : int) -> NoneType   2. __init__(self : rosetta.core.scoring.packstat.SasaResult,  : rosetta.core.scoring.packstat.SasaResult) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.packstat.SasaResult,  : rosetta.core.scoring.packstat.SasaResult) -> rosetta.core.scoring.packstat.SasaResult Data descriptors defined here: cavballs sphere_sasa   class SimplePDB(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.scoring.packstat.SimplePDB) -> NoneType   2. __init__(self : rosetta.core.scoring.packstat.SimplePDB,  : rosetta.core.scoring.packstat.SimplePDB) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.packstat.SimplePDB) -> str assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.packstat.SimplePDB,  : rosetta.core.scoring.packstat.SimplePDB) -> rosetta.core.scoring.packstat.SimplePDB atom(...) from builtins.PyCapsule atom(*args, **kwargs) Overloaded function.   1. atom(self : rosetta.core.scoring.packstat.SimplePDB, i : int) -> rosetta.core.scoring.packstat.SimplePDB_Atom   2. atom(self : rosetta.core.scoring.packstat.SimplePDB, i : int) -> rosetta.core.scoring.packstat.SimplePDB_Atom atoms(...) from builtins.PyCapsule atoms(*args, **kwargs) Overloaded function.   1. atoms(rosetta.core.scoring.packstat.SimplePDB) -> rosetta.utility.vector1_core_scoring_packstat_SimplePDB_Atom   2. atoms(rosetta.core.scoring.packstat.SimplePDB) -> rosetta.utility.vector1_core_scoring_packstat_SimplePDB_Atom get_pose_pack_data(...) from builtins.PyCapsule get_pose_pack_data(rosetta.core.scoring.packstat.SimplePDB) -> rosetta.core.scoring.packstat.PosePackData get_res_centers(...) from builtins.PyCapsule get_res_centers(rosetta.core.scoring.packstat.SimplePDB) -> rosetta.utility.vector1_numeric_xyzVector_double_t get_spheres(...) from builtins.PyCapsule get_spheres(self : rosetta.core.scoring.packstat.SimplePDB, arm : rosetta.core.scoring.packstat.AtomRadiusMap) -> rosetta.utility.vector1_core_scoring_packstat_Sphere natom(...) from builtins.PyCapsule natom(rosetta.core.scoring.packstat.SimplePDB) -> int num_water(...) from builtins.PyCapsule num_water(rosetta.core.scoring.packstat.SimplePDB) -> int remove_surface_waters(...) from builtins.PyCapsule remove_surface_waters(rosetta.core.scoring.packstat.SimplePDB) -> NoneType res_labels(...) from builtins.PyCapsule res_labels(rosetta.core.scoring.packstat.SimplePDB) -> rosetta.utility.vector1_std_string Data descriptors defined here: res_labels_   class SimplePDB_Atom(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.scoring.packstat.SimplePDB_Atom) -> NoneType   2. __init__(self : rosetta.core.scoring.packstat.SimplePDB_Atom,  : rosetta.core.scoring.packstat.SimplePDB_Atom) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.packstat.SimplePDB_Atom) -> str assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.packstat.SimplePDB_Atom,  : rosetta.core.scoring.packstat.SimplePDB_Atom) -> rosetta.core.scoring.packstat.SimplePDB_Atom Data descriptors defined here: ATOM bfac chain icode lastcol num occ radius res resnum sasa type whole_line x xyz y z   class Slice(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(self : rosetta.core.scoring.packstat.Slice, _accum : rosetta.core.scoring.packstat.Accumulator, thickness : float, internal_allowed : bool) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. add_circle(...) from builtins.PyCapsule add_circle(self : rosetta.core.scoring.packstat.Slice, circ : rosetta.core.scoring.packstat.Circle) -> NoneType assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.packstat.Slice,  : rosetta.core.scoring.packstat.Slice) -> rosetta.core.scoring.packstat.Slice compute(...) from builtins.PyCapsule compute(rosetta.core.scoring.packstat.Slice) -> NoneType Data descriptors defined here: accum_ circles_ events_ internal_allowed_ thickness_ traces_   class Sphere(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.scoring.packstat.Sphere, rosetta.numeric.xyzVector_double_t, float) -> NoneType   doc   2. __init__(self : rosetta.core.scoring.packstat.Sphere, xyz_in : rosetta.numeric.xyzVector_double_t, rad_in : float, _id : int) -> NoneType   3. __init__(self : rosetta.core.scoring.packstat.Sphere, xyz_in : rosetta.numeric.xyzVector_double_t, rad_in : float, _aid : rosetta.core.id.AtomID) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.packstat.Sphere) -> str Data descriptors defined here: aid id radius sasa xyz   class trace(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(self : rosetta.core.scoring.packstat.trace, _accum : rosetta.core.scoring.packstat.Accumulator, e : rosetta.core.scoring.packstat.Event, _ccw : bool, _circle : rosetta.core.scoring.packstat.Circle, _angle : float, other_trace : rosetta.core.scoring.packstat.trace) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. end(...) from builtins.PyCapsule end(*args, **kwargs) Overloaded function.   1. end(self : rosetta.core.scoring.packstat.trace, merge_trace : rosetta.core.scoring.packstat.trace) -> NoneType   2. end(self : rosetta.core.scoring.packstat.trace, merge_trace : rosetta.core.scoring.packstat.trace, end_angle : float) -> NoneType get_first(...) from builtins.PyCapsule get_first(self : rosetta.core.scoring.packstat.trace, stop : rosetta.core.scoring.packstat.trace) -> rosetta.core.scoring.packstat.Event next_circle(...) from builtins.PyCapsule next_circle(self : rosetta.core.scoring.packstat.trace, newcircle : rosetta.core.scoring.packstat.Circle, end_angle : float, begin_angle : float) -> NoneType set_first(...) from builtins.PyCapsule set_first(self : rosetta.core.scoring.packstat.trace, stop : rosetta.core.scoring.packstat.trace, e : rosetta.core.scoring.packstat.Event) -> NoneType Data descriptors defined here: accum_ angle arcs_ ccw

Functions
		check_surface_area_leerichards_deriv(...) method of builtins.PyCapsule instance check_surface_area_leerichards_deriv(*args, **kwargs) Overloaded function.   1. check_surface_area_leerichards_deriv(pd : rosetta.core.scoring.packstat.PosePackData, slicesize : float, pr : float) -> rosetta.utility.vector1_numeric_xyzVector_double_t   2. check_surface_area_leerichards_deriv(pd : rosetta.core.scoring.packstat.PosePackData, slicesize : float, pr : float, csa : bool) -> rosetta.utility.vector1_numeric_xyzVector_double_t   3. check_surface_area_leerichards_deriv(pd : rosetta.core.scoring.packstat.PosePackData, slicesize : float, pr : float, csa : bool, max_num : int) -> rosetta.utility.vector1_numeric_xyzVector_double_t compute_atom_packing_scores(...) method of builtins.PyCapsule instance compute_atom_packing_scores(*args, **kwargs) Overloaded function.   1. compute_atom_packing_scores(pd : rosetta.core.scoring.packstat.PosePackData) -> rosetta.utility.vector1_double   2. compute_atom_packing_scores(pd : rosetta.core.scoring.packstat.PosePackData, oversample : int) -> rosetta.utility.vector1_double   3. compute_atom_packing_scores(pose : rosetta.core.pose.Pose) -> rosetta.core.id.AtomID_Map_double_t   4. compute_atom_packing_scores(pose : rosetta.core.pose.Pose, oversample : int) -> rosetta.core.id.AtomID_Map_double_t compute_cav_ball_neighbor_count(...) method of builtins.PyCapsule instance compute_cav_ball_neighbor_count(spheres : rosetta.utility.vector1_core_scoring_packstat_Sphere, cavballs : rosetta.utility.vector1_core_scoring_packstat_CavityBall, dis : float) -> NoneType compute_cav_ball_volumes(...) method of builtins.PyCapsule instance compute_cav_ball_volumes(cavballs : rosetta.utility.vector1_core_scoring_packstat_CavityBall, opts : rosetta.core.scoring.packstat.SasaOptions) -> NoneType compute_packing_score(...) method of builtins.PyCapsule instance compute_packing_score(*args, **kwargs) Overloaded function.   1. compute_packing_score(pd : rosetta.core.scoring.packstat.PosePackData) -> float   2. compute_packing_score(pd : rosetta.core.scoring.packstat.PosePackData, oversample : int) -> float   3. compute_packing_score(pose : rosetta.core.pose.Pose) -> float   4. compute_packing_score(pose : rosetta.core.pose.Pose, oversample : int) -> float compute_packing_score_leerichards(...) method of builtins.PyCapsule instance compute_packing_score_leerichards(*args, **kwargs) Overloaded function.   1. compute_packing_score_leerichards(pd : rosetta.core.scoring.packstat.PosePackData, slicesize : float) -> float   2. compute_packing_score_leerichards(pd : rosetta.core.scoring.packstat.PosePackData, slicesize : float, plane : rosetta.numeric.xyzVector_double_t) -> float compute_residue_packing_score(...) method of builtins.PyCapsule instance compute_residue_packing_score(*args, **kwargs) Overloaded function.   1. compute_residue_packing_score(pd : rosetta.core.scoring.packstat.PosePackData, seqpos : int) -> float   2. compute_residue_packing_score(pd : rosetta.core.scoring.packstat.PosePackData, seqpos : int, oversample : int) -> float   3. compute_residue_packing_score(pose : rosetta.core.pose.Pose, seqpos : int) -> float   4. compute_residue_packing_score(pose : rosetta.core.pose.Pose, seqpos : int, oversample : int) -> float compute_residue_packing_scores(...) method of builtins.PyCapsule instance compute_residue_packing_scores(*args, **kwargs) Overloaded function.   1. compute_residue_packing_scores(pd : rosetta.core.scoring.packstat.PosePackData) -> rosetta.utility.vector1_double   2. compute_residue_packing_scores(pd : rosetta.core.scoring.packstat.PosePackData, oversample : int) -> rosetta.utility.vector1_double   3. compute_residue_packing_scores(pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_double   4. compute_residue_packing_scores(pose : rosetta.core.pose.Pose, oversample : int) -> rosetta.utility.vector1_double compute_sasa(...) method of builtins.PyCapsule instance compute_sasa(spheres : rosetta.utility.vector1_core_scoring_packstat_Sphere, opts : rosetta.core.scoring.packstat.SasaOptions) -> rosetta.core.scoring.packstat.SasaResult compute_surface_area_leerichards(...) method of builtins.PyCapsule instance compute_surface_area_leerichards(*args, **kwargs) Overloaded function.   1. compute_surface_area_leerichards(buried_area_out : float, pd : rosetta.core.scoring.packstat.PosePackData, slicesize : float, pr : float) -> float   2. compute_surface_area_leerichards(buried_area_out : float, pd : rosetta.core.scoring.packstat.PosePackData, slicesize : float, pr : float, csa : bool) -> float   3. compute_surface_area_leerichards(buried_area_out : float, pd : rosetta.core.scoring.packstat.PosePackData, slicesize : float, pr : float, csa : bool, plane : rosetta.numeric.xyzVector_double_t) -> float   4. compute_surface_area_leerichards(pd : rosetta.core.scoring.packstat.PosePackData, slicesize : float, pr : float) -> float   5. compute_surface_area_leerichards(pd : rosetta.core.scoring.packstat.PosePackData, slicesize : float, pr : float, csa : bool) -> float   6. compute_surface_area_leerichards(pd : rosetta.core.scoring.packstat.PosePackData, slicesize : float, pr : float, csa : bool, plane : rosetta.numeric.xyzVector_double_t) -> float compute_surface_area_leerichards_deriv(...) method of builtins.PyCapsule instance compute_surface_area_leerichards_deriv(*args, **kwargs) Overloaded function.   1. compute_surface_area_leerichards_deriv(pd : rosetta.core.scoring.packstat.PosePackData, slicesize : float, pr : float) -> rosetta.utility.vector1_numeric_xyzVector_double_t   2. compute_surface_area_leerichards_deriv(pd : rosetta.core.scoring.packstat.PosePackData, slicesize : float, pr : float, csa : bool) -> rosetta.utility.vector1_numeric_xyzVector_double_t compute_surrounding_sasa(...) method of builtins.PyCapsule instance compute_surrounding_sasa(xyz : rosetta.numeric.xyzVector_double_t, spheres : rosetta.utility.vector1_core_scoring_packstat_Sphere, result : rosetta.core.scoring.packstat.SasaResult, opts : rosetta.core.scoring.packstat.SasaOptions) -> rosetta.core.scoring.packstat.PackingScoreResData get_sasa_dot_locations(...) method of builtins.PyCapsule instance get_sasa_dot_locations() -> rosetta.utility.vector1_numeric_xyzVector_double_t init_packing_score_discrim(...) method of builtins.PyCapsule instance init_packing_score_discrim(p : rosetta.core.scoring.packstat.PackingScore) -> NoneType init_packing_score_respred(...) method of builtins.PyCapsule instance init_packing_score_respred(p : rosetta.core.scoring.packstat.PackingScore) -> NoneType max_rad(...) method of builtins.PyCapsule instance max_rad(*args, **kwargs) Overloaded function.   1. max_rad(s : rosetta.utility.vector1_core_scoring_packstat_Sphere) -> float   2. max_rad(s : rosetta.utility.vector1_core_scoring_packstat_CavityBall) -> float pose_to_pack_data(...) method of builtins.PyCapsule instance pose_to_pack_data(*args, **kwargs) Overloaded function.   1. pose_to_pack_data(pose : rosetta.core.pose.Pose) -> rosetta.core.scoring.packstat.PosePackData   2. pose_to_pack_data(pose : rosetta.core.pose.Pose, include_water : int) -> rosetta.core.scoring.packstat.PosePackData prune_cavity_balls(...) method of builtins.PyCapsule instance prune_cavity_balls(spheres : rosetta.utility.vector1_core_scoring_packstat_Sphere, cavballs : rosetta.utility.vector1_core_scoring_packstat_CavityBall, opts : rosetta.core.scoring.packstat.SasaOptions) -> rosetta.utility.vector1_core_scoring_packstat_CavityBall prune_hidden_cavity_balls(...) method of builtins.PyCapsule instance prune_hidden_cavity_balls(cavballs : rosetta.utility.vector1_core_scoring_packstat_CavityBall, opts : rosetta.core.scoring.packstat.SasaOptions) -> rosetta.utility.vector1_core_scoring_packstat_CavityBall search_x(...) method of builtins.PyCapsule instance search_x(*args, **kwargs) Overloaded function.   1. search_x(spheres : rosetta.utility.vector1_core_scoring_packstat_Sphere, x : float, begin : int, end : int) -> int   2. search_x(spheres : rosetta.utility.vector1_core_scoring_packstat_Sphere, x : float) -> int   3. search_x(cbs : rosetta.utility.vector1_core_scoring_packstat_CavityBall, x : float, begin : int, end : int) -> int   4. search_x(cbs : rosetta.utility.vector1_core_scoring_packstat_CavityBall, x : float) -> int select_cav_balls(...) method of builtins.PyCapsule instance select_cav_balls(cavballs : rosetta.utility.vector1_core_scoring_packstat_CavityBall, spacing : float) -> rosetta.utility.vector1_core_scoring_packstat_CavityBall

Data
		ENTER = EventType.ENTER EXIT = EventType.EXIT ISECT = EventType.ISECT