Python: module rosetta.core.scoring.motif

rosetta.core.scoring.motif

index
(built-in)

Bindings for core::scoring::motif namespace

Classes



builtins.object

MotifHash
MotifHashManager
MotifHit
MotifMatchOverlapReq
RM_Type
RPM_FilterStats
RPM_Type
ResPairMotif
ResPairMotifMetaBinner
ResPairMotifQuery
XformScore
Xfrag
XfragSet
Xfres

rosetta.std.map_std_string_double(builtins.object)

MotifHitStats

rosetta.utility.vector1_core_scoring_motif_MotifHit(builtins.object)

MotifHits

rosetta.utility.vector1_core_scoring_motif_ResPairMotif(builtins.object)

ResPairMotifs

class MotifHash(builtins.object)

    Methods defined here:

__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs) Overloaded function. 1. __init__(rosetta.core.scoring.motif.MotifHash) -> NoneType 2. __init__(self : rosetta.core.scoring.motif.MotifHash, cart_resl : float, ang_resl : float) -> NoneType 3. __init__(self : rosetta.core.scoring.motif.MotifHash, motifs : rosetta.core.scoring.motif.ResPairMotifs) -> NoneType

__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.

__str__(...) from builtins.PyCapsule
__str__(rosetta.core.scoring.motif.MotifHash) -> str

add_motif(...) from builtins.PyCapsule
add_motif(*args, **kwargs) Overloaded function. 1. add_motif(self : rosetta.core.scoring.motif.MotifHash, d : rosetta.core.scoring.motif.ResPairMotif) -> NoneType 2. add_motif(self : rosetta.core.scoring.motif.MotifHash, d : rosetta.core.scoring.motif.ResPairMotif, key : int) -> NoneType

bin_index(...) from builtins.PyCapsule
bin_index(*args, **kwargs) Overloaded function. 1. bin_index(self : rosetta.core.scoring.motif.MotifHash, rt : rosetta.utility.fixedsizearray1_double_6_t) -> int 2. bin_index(self : rosetta.core.scoring.motif.MotifHash, m : rosetta.core.scoring.motif.ResPairMotif) -> int

cart_size(...) from builtins.PyCapsule
cart_size(rosetta.core.scoring.motif.MotifHash) -> float

check_bounds(...) from builtins.PyCapsule
check_bounds(self : rosetta.core.scoring.motif.MotifHash, rt6 : rosetta.utility.fixedsizearray1_double_6_t) -> bool

count_motifs(...) from builtins.PyCapsule
count_motifs(*args, **kwargs) Overloaded function. 1. count_motifs(self : rosetta.core.scoring.motif.MotifHash, rt : rosetta.utility.fixedsizearray1_double_6_t) -> int 2. count_motifs(self : rosetta.core.scoring.motif.MotifHash, k : int) -> int

find_motifs(...) from builtins.PyCapsule
find_motifs(*args, **kwargs) Overloaded function. 1. find_motifs(self : rosetta.core.scoring.motif.MotifHash, k : int, results : rosetta.core.scoring.motif.ResPairMotifs) -> NoneType 2. find_motifs(self : rosetta.core.scoring.motif.MotifHash, rt : rosetta.utility.fixedsizearray1_double_6_t, results : rosetta.core.scoring.motif.ResPairMotifs) -> NoneType

find_motifs_with_radius(...) from builtins.PyCapsule
find_motifs_with_radius(self : rosetta.core.scoring.motif.MotifHash, rt : rosetta.utility.fixedsizearray1_double_6_t, radius : float, results : rosetta.utility.vector1_core_scoring_motif_ResPairMotif) -> NoneType

get_matching_motifs(...) from builtins.PyCapsule
get_matching_motifs(*args, **kwargs) Overloaded function. 1. get_matching_motifs(self : rosetta.core.scoring.motif.MotifHash, opt : rosetta.core.scoring.motif.ResPairMotifQuery, hits : rosetta.core.scoring.motif.MotifHits) -> int 2. get_matching_motifs(self : rosetta.core.scoring.motif.MotifHash, opt : rosetta.core.scoring.motif.ResPairMotifQuery, hits : rosetta.core.scoring.motif.MotifHits, newhits : rosetta.core.scoring.motif.MotifHits) -> int 3. get_matching_motifs(self : rosetta.core.scoring.motif.MotifHash, opt : rosetta.core.scoring.motif.ResPairMotifQuery) -> rosetta.core.scoring.motif.MotifHits

hasher(...) from builtins.PyCapsule
hasher(*args, **kwargs) Overloaded function. 1. hasher(rosetta.core.scoring.motif.MotifHash) -> rosetta.numeric.geometry.hashing.SixDCoordinateBinner 2. hasher(rosetta.core.scoring.motif.MotifHash) -> rosetta.numeric.geometry.hashing.SixDCoordinateBinner

num_motifs(...) from builtins.PyCapsule
num_motifs(rosetta.core.scoring.motif.MotifHash) -> int

sanity_check(...) from builtins.PyCapsule
sanity_check(rosetta.core.scoring.motif.MotifHash) -> NoneType

type(...) from builtins.PyCapsule
type(rosetta.core.scoring.motif.MotifHash) -> rosetta.core.scoring.motif.RPM_Type

type1(...) from builtins.PyCapsule
type1(rosetta.core.scoring.motif.MotifHash) -> rosetta.core.scoring.motif.RM_Type

type2(...) from builtins.PyCapsule
type2(rosetta.core.scoring.motif.MotifHash) -> rosetta.core.scoring.motif.RM_Type

Data descriptors defined here:

angle_resl_

cart_resl_

cart_size_

hasher_

key_set_

motif_umap_

type_

class MotifHashManager(builtins.object)

    Methods defined here:

__init__(self, /, *args, **kwargs)
Initialize self.  See help(type(self)) for accurate signature.

__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.

add_motif_set_name(...) from builtins.PyCapsule
add_motif_set_name(self : rosetta.core.scoring.motif.MotifHashManager, motifset : str) -> NoneType

get_instance(...) from builtins.PyCapsule
get_instance() -> rosetta.core.scoring.motif.MotifHashManager

get_matching_motifs(...) from builtins.PyCapsule
get_matching_motifs(self : rosetta.core.scoring.motif.MotifHashManager, opt : rosetta.core.scoring.motif.ResPairMotifQuery, hits : rosetta.core.scoring.motif.MotifHits) -> int

get_motif_hash_BB_BB(...) from builtins.PyCapsule
get_motif_hash_BB_BB(rosetta.core.scoring.motif.MotifHashManager) -> rosetta.core.scoring.motif.MotifHash

get_motif_hash_BB_PH(...) from builtins.PyCapsule
get_motif_hash_BB_PH(rosetta.core.scoring.motif.MotifHashManager) -> rosetta.core.scoring.motif.MotifHash

get_motif_hash_BB_PO(...) from builtins.PyCapsule
get_motif_hash_BB_PO(rosetta.core.scoring.motif.MotifHashManager) -> rosetta.core.scoring.motif.MotifHash

get_motif_hash_SC_BB(...) from builtins.PyCapsule
get_motif_hash_SC_BB(rosetta.core.scoring.motif.MotifHashManager) -> rosetta.core.scoring.motif.MotifHash

get_motif_hash_SC_SC(...) from builtins.PyCapsule
get_motif_hash_SC_SC(rosetta.core.scoring.motif.MotifHashManager) -> rosetta.core.scoring.motif.MotifHash

get_motif_hash_by_fname(...) from builtins.PyCapsule
get_motif_hash_by_fname(*args, **kwargs) Overloaded function. 1. get_motif_hash_by_fname(self : rosetta.core.scoring.motif.MotifHashManager, fname : str) -> rosetta.core.scoring.motif.MotifHash 2. get_motif_hash_by_fname(rosetta.core.scoring.motif.MotifHashManager) -> rosetta.std.map_std_string_std_shared_ptr_core_scoring_motif_MotifHash_t

get_xform_score_BB_BB(...) from builtins.PyCapsule
get_xform_score_BB_BB(*args, **kwargs) Overloaded function. 1. get_xform_score_BB_BB(self : rosetta.core.scoring.motif.MotifHashManager, ss1 : str, ss2 : str) -> rosetta.core.scoring.motif.XformScore 2. get_xform_score_BB_BB(self : rosetta.core.scoring.motif.MotifHashManager, ss1 : str, ss2 : str, aa1 : str) -> rosetta.core.scoring.motif.XformScore 3. get_xform_score_BB_BB(self : rosetta.core.scoring.motif.MotifHashManager, ss1 : str, ss2 : str, aa1 : str, aa2 : str) -> rosetta.core.scoring.motif.XformScore

get_xform_score_BB_PH(...) from builtins.PyCapsule
get_xform_score_BB_PH(rosetta.core.scoring.motif.MotifHashManager) -> rosetta.core.scoring.motif.XformScore

get_xform_score_BB_PO(...) from builtins.PyCapsule
get_xform_score_BB_PO(rosetta.core.scoring.motif.MotifHashManager) -> rosetta.core.scoring.motif.XformScore

get_xform_score_PH_PO(...) from builtins.PyCapsule
get_xform_score_PH_PO(rosetta.core.scoring.motif.MotifHashManager) -> rosetta.core.scoring.motif.XformScore

get_xform_score_SC_BB(...) from builtins.PyCapsule
get_xform_score_SC_BB(self : rosetta.core.scoring.motif.MotifHashManager, aa1 : str) -> rosetta.core.scoring.motif.XformScore

get_xform_score_SC_SC(...) from builtins.PyCapsule
get_xform_score_SC_SC(self : rosetta.core.scoring.motif.MotifHashManager, aa1 : str, aa2 : str) -> rosetta.core.scoring.motif.XformScore

get_xform_score_frags(...) from builtins.PyCapsule
get_xform_score_frags(rosetta.core.scoring.motif.MotifHashManager) -> rosetta.core.scoring.motif.XformScore

have_motif_set_named(...) from builtins.PyCapsule
have_motif_set_named(self : rosetta.core.scoring.motif.MotifHashManager, motifset : str) -> bool

have_motifs(...) from builtins.PyCapsule
have_motifs(rosetta.core.scoring.motif.MotifHashManager) -> bool

motif_set_names(...) from builtins.PyCapsule
motif_set_names(rosetta.core.scoring.motif.MotifHashManager) -> rosetta.std.set_std_string_std_less_std_string_std_allocator_std_string_t

class MotifHit(builtins.object)

    Methods defined here:

__eq__(...) from builtins.PyCapsule
__eq__(self : rosetta.core.scoring.motif.MotifHit, other : rosetta.core.scoring.motif.MotifHit) -> bool

__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs) Overloaded function. 1. __init__(rosetta.core.scoring.motif.MotifHit) -> NoneType 2. __init__(self : rosetta.core.scoring.motif.MotifHit, _pose1 : rosetta.core.pose.Pose, _pose2 : rosetta.core.pose.Pose, res1 : int, res2 : int, sm : rosetta.core.scoring.motif.ResPairMotif) -> NoneType

__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.

__str__(...) from builtins.PyCapsule
__str__(rosetta.core.scoring.motif.MotifHit) -> str

chi_rmsd(...) from builtins.PyCapsule
chi_rmsd(rosetta.core.scoring.motif.MotifHit) -> float

mpose(...) from builtins.PyCapsule
mpose(*args, **kwargs) Overloaded function. 1. mpose(rosetta.core.scoring.motif.MotifHit) -> rosetta.core.pose.Pose 2. mpose(rosetta.core.scoring.motif.MotifHit) -> rosetta.core.pose.Pose

mposeptr(...) from builtins.PyCapsule
mposeptr(*args, **kwargs) Overloaded function. 1. mposeptr(rosetta.core.scoring.motif.MotifHit) -> rosetta.core.pose.Pose 2. mposeptr(rosetta.core.scoring.motif.MotifHit) -> rosetta.core.pose.Pose

pose1(...) from builtins.PyCapsule
pose1(rosetta.core.scoring.motif.MotifHit) -> rosetta.core.pose.Pose

pose1ptr(...) from builtins.PyCapsule
pose1ptr(rosetta.core.scoring.motif.MotifHit) -> rosetta.core.pose.Pose

pose2(...) from builtins.PyCapsule
pose2(rosetta.core.scoring.motif.MotifHit) -> rosetta.core.pose.Pose

pose2ptr(...) from builtins.PyCapsule
pose2ptr(rosetta.core.scoring.motif.MotifHit) -> rosetta.core.pose.Pose

Data descriptors defined here:

chi_rmsd_

index

motif

mpose_

pose1_

pose2_

residue1

residue2

rms

score1

score2

class MotifHitStats(rosetta.std.map_std_string_double)


Method resolution order:

MotifHitStats

rosetta.std.map_std_string_double

builtins.object

Methods defined here:

__init__(...) from builtins.PyCapsule
__init__(rosetta.core.scoring.motif.MotifHitStats) -> NoneType

__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.

Methods inherited from rosetta.std.map_std_string_double:

__bool__(...) from builtins.PyCapsule
__bool__(rosetta.std.map_std_string_double) -> bool Check whether the map is nonempty

__delitem__(...) from builtins.PyCapsule
__delitem__(rosetta.std.map_std_string_double, str) -> std::_Rb_tree_iterator<std::pair<std::string const, double> >

__getitem__(...) from builtins.PyCapsule
__getitem__(rosetta.std.map_std_string_double, str) -> float

__len__(...) from builtins.PyCapsule
__len__(rosetta.std.map_std_string_double) -> int

__repr__(...) from builtins.PyCapsule
__repr__(rosetta.std.map_std_string_double) -> str Return the canonical string representation of this map.

__setitem__(...) from builtins.PyCapsule
__setitem__(rosetta.std.map_std_string_double, str, float) -> NoneType

class MotifHits(rosetta.utility.vector1_core_scoring_motif_MotifHit)


Method resolution order:

MotifHits

rosetta.utility.vector1_core_scoring_motif_MotifHit

builtins.object

Methods defined here:

__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs) Overloaded function. 1. __init__(rosetta.core.scoring.motif.MotifHits) -> NoneType 2. __init__(self : rosetta.core.scoring.motif.MotifHits,  : rosetta.core.scoring.motif.MotifHits) -> NoneType

__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.

__str__(...) from builtins.PyCapsule
__str__(rosetta.core.scoring.motif.MotifHits) -> str

assign(...) from builtins.PyCapsule
assign(self : rosetta.core.scoring.motif.MotifHits,  : rosetta.core.scoring.motif.MotifHits) -> rosetta.core.scoring.motif.MotifHits

compute_metrics(...) from builtins.PyCapsule
compute_metrics(rosetta.core.scoring.motif.MotifHits) -> NoneType

dump_motifs_pdb(...) from builtins.PyCapsule
dump_motifs_pdb(*args, **kwargs) Overloaded function. 1. dump_motifs_pdb(self : rosetta.core.scoring.motif.MotifHits, fname : str, atomno : int) -> NoneType 2. dump_motifs_pdb(self : rosetta.core.scoring.motif.MotifHits, fname : str, atomno : int, xforms : rosetta.numeric.Xforms) -> NoneType 3. dump_motifs_pdb(self : rosetta.core.scoring.motif.MotifHits, fname : str, pose : rosetta.core.pose.Pose, atomno : int) -> NoneType 4. dump_motifs_pdb(self : rosetta.core.scoring.motif.MotifHits, fname : str, pose : rosetta.core.pose.Pose, atomno : int, xforms : rosetta.numeric.Xforms) -> NoneType 5. dump_motifs_pdb(self : rosetta.core.scoring.motif.MotifHits, fname : str) -> NoneType 6. dump_motifs_pdb(self : rosetta.core.scoring.motif.MotifHits, fname : str, xforms : rosetta.numeric.Xforms) -> NoneType 7. dump_motifs_pdb(self : rosetta.core.scoring.motif.MotifHits, fname : str, pose : rosetta.core.pose.Pose) -> NoneType 8. dump_motifs_pdb(self : rosetta.core.scoring.motif.MotifHits, fname : str, pose : rosetta.core.pose.Pose, xforms : rosetta.numeric.Xforms) -> NoneType

dump_resfile(...) from builtins.PyCapsule
dump_resfile(self : rosetta.core.scoring.motif.MotifHits, fn : str) -> NoneType

filter_redundant(...) from builtins.PyCapsule
filter_redundant(rosetta.core.scoring.motif.MotifHits) -> NoneType

get_resfile(...) from builtins.PyCapsule
get_resfile(*args, **kwargs) Overloaded function. 1. get_resfile(rosetta.core.scoring.motif.MotifHits) -> str 2. get_resfile(self : rosetta.core.scoring.motif.MotifHits, restrict : bool) -> str 3. get_resfile(self : rosetta.core.scoring.motif.MotifHits, restrict : bool, resi_in_resfile : rosetta.std.set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t) -> str

num_hits(...) from builtins.PyCapsule
num_hits(self : rosetta.core.scoring.motif.MotifHits, ir : int) -> int

num_hits1(...) from builtins.PyCapsule
num_hits1(self : rosetta.core.scoring.motif.MotifHits, ir : int) -> int

num_hits2(...) from builtins.PyCapsule
num_hits2(self : rosetta.core.scoring.motif.MotifHits, ir : int) -> int

push_back(...) from builtins.PyCapsule
push_back(self : rosetta.core.scoring.motif.MotifHits, h : rosetta.core.scoring.motif.MotifHit) -> NoneType

push_back_raw(...) from builtins.PyCapsule
push_back_raw(self : rosetta.core.scoring.motif.MotifHits, h : rosetta.core.scoring.motif.MotifHit) -> NoneType

sort_by_rms_and_energy(...) from builtins.PyCapsule
sort_by_rms_and_energy(rosetta.core.scoring.motif.MotifHits) -> NoneType

stat_motifs(...) from builtins.PyCapsule
stat_motifs(self : rosetta.core.scoring.motif.MotifHits, stat : rosetta.core.scoring.motif.MotifHitStats) -> int

Data descriptors defined here:

paircover

rescover

resmap1_

resmap2_

total_score

Methods inherited from rosetta.utility.vector1_core_scoring_motif_MotifHit:

__bool__(...) from builtins.PyCapsule
__bool__(rosetta.utility.vector1_core_scoring_motif_MotifHit) -> bool Check whether the list is nonempty

__getitem__(...) from builtins.PyCapsule
__getitem__(rosetta.utility.vector1_core_scoring_motif_MotifHit, int) -> core::scoring::motif::MotifHit

__iter__(...) from builtins.PyCapsule
__iter__(rosetta.utility.vector1_core_scoring_motif_MotifHit) -> iterator

__len__(...) from builtins.PyCapsule
__len__(rosetta.utility.vector1_core_scoring_motif_MotifHit) -> int

__repr__(...) from builtins.PyCapsule
__repr__(rosetta.utility.vector1_core_scoring_motif_MotifHit) -> str

__setitem__(...) from builtins.PyCapsule
__setitem__(rosetta.utility.vector1_core_scoring_motif_MotifHit, int, core::scoring::motif::MotifHit) -> NoneType

append(...) from builtins.PyCapsule
append(rosetta.utility.vector1_core_scoring_motif_MotifHit, core::scoring::motif::MotifHit) -> NoneType adds an element to the end

back(...) from builtins.PyCapsule
back(rosetta.utility.vector1_core_scoring_motif_MotifHit) -> core::scoring::motif::MotifHit access the last element

capacity(...) from builtins.PyCapsule
capacity(std::vector<core::scoring::motif::MotifHit, std::allocator<core::scoring::motif::MotifHit> >) -> int returns the number of elements that can be held in currently allocated storage

clear(...) from builtins.PyCapsule
clear(std::vector<core::scoring::motif::MotifHit, std::allocator<core::scoring::motif::MotifHit> >) -> NoneType clears the contents

erase(...) from builtins.PyCapsule
erase(rosetta.utility.vector1_core_scoring_motif_MotifHit, int) -> NoneType erases element at index

extend = _vector_extend_func(vec, othervec)
# Vector compatibility: Adding 'extend' to all utility.vector* functions

front(...) from builtins.PyCapsule
front(rosetta.utility.vector1_core_scoring_motif_MotifHit) -> core::scoring::motif::MotifHit access the first element

l(...) from builtins.PyCapsule
l(rosetta.utility.vector1_core_scoring_motif_MotifHit) -> int lower index

max_size(...) from builtins.PyCapsule
max_size(std::vector<core::scoring::motif::MotifHit, std::allocator<core::scoring::motif::MotifHit> >) -> int returns the maximum possible number of elements

pop(...) from builtins.PyCapsule
pop(*args, **kwargs) Overloaded function. 1. pop(rosetta.utility.vector1_core_scoring_motif_MotifHit) -> core::scoring::motif::MotifHit remove and return last item 2. pop(rosetta.utility.vector1_core_scoring_motif_MotifHit, int) -> core::scoring::motif::MotifHit remove and return item at index

reserve(...) from builtins.PyCapsule
reserve(std::vector<core::scoring::motif::MotifHit, std::allocator<core::scoring::motif::MotifHit> >, int) -> NoneType reserves storage

resize(...) from builtins.PyCapsule
resize(rosetta.utility.vector1_core_scoring_motif_MotifHit, int) -> NoneType changes the number of elements stored

shrink_to_fit(...) from builtins.PyCapsule
shrink_to_fit(std::vector<core::scoring::motif::MotifHit, std::allocator<core::scoring::motif::MotifHit> >) -> NoneType reduces memory usage by freeing unused memory

u(...) from builtins.PyCapsule
u(rosetta.utility.vector1_core_scoring_motif_MotifHit) -> int upper index

class MotifMatchOverlapReq(builtins.object)

    Methods defined here:

__eq__(...) from builtins.PyCapsule
__eq__(rosetta.core.scoring.motif.MotifMatchOverlapReq, rosetta.core.scoring.motif.MotifMatchOverlapReq) -> bool

__hash__(...) from builtins.PyCapsule
__hash__(rosetta.core.scoring.motif.MotifMatchOverlapReq) -> int

__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs) Overloaded function. 1. __init__(rosetta.core.scoring.motif.MotifMatchOverlapReq, int) -> NoneType 2. __init__(rosetta.core.scoring.motif.MotifMatchOverlapReq, int) -> NoneType

__int__(...) from builtins.PyCapsule
__int__(rosetta.core.scoring.motif.MotifMatchOverlapReq) -> int

__ne__(...) from builtins.PyCapsule
__ne__(rosetta.core.scoring.motif.MotifMatchOverlapReq, rosetta.core.scoring.motif.MotifMatchOverlapReq) -> bool

__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.

__repr__(...) from builtins.PyCapsule
__repr__(rosetta.core.scoring.motif.MotifMatchOverlapReq) -> str

Data and other attributes defined here:

MATCH_AA = MotifMatchOverlapReq.MATCH_AA

MATCH_ANY = MotifMatchOverlapReq.MATCH_ANY

MATCH_HYDROPHOBICITY = MotifMatchOverlapReq.MATCH_HYDROPHOBICITY

MATCH_ROTAMER = MotifMatchOverlapReq.MATCH_ROTAMER

NO_OVERLAP = MotifMatchOverlapReq.NO_OVERLAP

SMALL_OVERLAP = MotifMatchOverlapReq.SMALL_OVERLAP

class RM_Type(builtins.object)

    Methods defined here:

__eq__(...) from builtins.PyCapsule
__eq__(rosetta.core.scoring.motif.RM_Type, rosetta.core.scoring.motif.RM_Type) -> bool

__hash__(...) from builtins.PyCapsule
__hash__(rosetta.core.scoring.motif.RM_Type) -> int

__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs) Overloaded function. 1. __init__(rosetta.core.scoring.motif.RM_Type, int) -> NoneType 2. __init__(rosetta.core.scoring.motif.RM_Type, int) -> NoneType

__int__(...) from builtins.PyCapsule
__int__(rosetta.core.scoring.motif.RM_Type) -> int

__ne__(...) from builtins.PyCapsule
__ne__(rosetta.core.scoring.motif.RM_Type, rosetta.core.scoring.motif.RM_Type) -> bool

__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.

__repr__(...) from builtins.PyCapsule
__repr__(rosetta.core.scoring.motif.RM_Type) -> str

Data and other attributes defined here:

NUM_RM_TYPES = RM_Type.NUM_RM_TYPES

RM_BB = RM_Type.RM_BB

RM_PH = RM_Type.RM_PH

RM_PO = RM_Type.NUM_RM_TYPES

RM_SC = RM_Type.RM_SC

RM_Type_NONE = RM_Type.RM_Type_NONE

class RPM_FilterStats(builtins.object)

    Methods defined here:

__init__(...) from builtins.PyCapsule
__init__(rosetta.core.scoring.motif.RPM_FilterStats) -> NoneType

__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.

__str__(...) from builtins.PyCapsule
__str__(rosetta.core.scoring.motif.RPM_FilterStats) -> str

Data descriptors defined here:

F_aa1

F_aa2

F_coorderr

F_dssp1

F_dssp2

F_faatr

F_faatr_or_hb

F_faatr_or_hbbb

F_hb_bb

F_hb_bb_sc

F_hb_sc

F_lig

F_max_seqsep

F_maxdist2

F_mindist2

F_no_hb_bb

F_nodisulf

F_noloops

F_not_restype

F_not_restype_one

F_occupancy

F_oneloop

F_pdb

F_restype

F_restype1

F_restype2

F_restype_one

F_score

F_seqsep

F_ss1

F_ss2

F_type_BB_BB

F_type_BB_PH

F_type_BB_PO

F_type_PH_PO

F_type_SC_BB

F_type_SC_PH

F_type_SC_PO

F_type_SC_SC

F_uniformfrag

P_aa1

P_aa2

P_coorderr

P_dssp1

P_dssp2

P_faatr

P_faatr_or_hb

P_faatr_or_hbbb

P_hb_bb

P_hb_bb_sc

P_hb_sc

P_lig

P_max_seqsep

P_maxdist2

P_mindist2

P_no_hb_bb

P_nodisulf

P_noloops

P_not_restype

P_not_restype_one

P_occupancy

P_oneloop

P_pdb

P_restype

P_restype1

P_restype2

P_restype_one

P_score

P_seqsep

P_ss1

P_ss2

P_type_BB_BB

P_type_BB_PH

P_type_BB_PO

P_type_PH_PO

P_type_SC_BB

P_type_SC_PH

P_type_SC_PO

P_type_SC_SC

P_uniformfrag

class RPM_Type(builtins.object)

    Methods defined here:

__eq__(...) from builtins.PyCapsule
__eq__(rosetta.core.scoring.motif.RPM_Type, rosetta.core.scoring.motif.RPM_Type) -> bool

__hash__(...) from builtins.PyCapsule
__hash__(rosetta.core.scoring.motif.RPM_Type) -> int

__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs) Overloaded function. 1. __init__(rosetta.core.scoring.motif.RPM_Type, int) -> NoneType 2. __init__(rosetta.core.scoring.motif.RPM_Type, int) -> NoneType

__int__(...) from builtins.PyCapsule
__int__(rosetta.core.scoring.motif.RPM_Type) -> int

__ne__(...) from builtins.PyCapsule
__ne__(rosetta.core.scoring.motif.RPM_Type, rosetta.core.scoring.motif.RPM_Type) -> bool

__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.

__repr__(...) from builtins.PyCapsule
__repr__(rosetta.core.scoring.motif.RPM_Type) -> str

Data and other attributes defined here:

BB_BB = RPM_Type.BB_BB

BB_PH = RPM_Type.BB_PH

BB_PO = RPM_Type.BB_PO

NUM_RPM_TYPES = RPM_Type.NUM_RPM_TYPES

PH_PO = RPM_Type.NUM_RPM_TYPES

RPM_Type_NONE = RPM_Type.RPM_Type_NONE

SC_BB = RPM_Type.SC_BB

SC_PH = RPM_Type.SC_PH

SC_PO = RPM_Type.SC_PO

SC_SC = RPM_Type.SC_SC

class ResPairMotif(builtins.object)

    Methods defined here:

__eq__(...) from builtins.PyCapsule
__eq__(self : rosetta.core.scoring.motif.ResPairMotif, other : rosetta.core.scoring.motif.ResPairMotif) -> bool

__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs) Overloaded function. 1. __init__(rosetta.core.scoring.motif.ResPairMotif) -> NoneType 2. __init__(self : rosetta.core.scoring.motif.ResPairMotif, tag : str, pose : rosetta.core.pose.Pose, rt6 : rosetta.utility.fixedsizearray1_double_6_t, resi1 : int, resi2 : int, nbrs1 : float, nbrs2 : float, fa_atr : float, fa_atr_sc_bb : float, fa_atr_bb : float, hb_sc : float, hb_bb_sc : float, hb_bb : float, bfac1 : float, bfac2 : float, is_sspaired : bool, _type : rosetta.core.scoring.motif.RPM_Type) -> NoneType 3. __init__(self : rosetta.core.scoring.motif.ResPairMotif,  : rosetta.core.scoring.motif.ResPairMotif) -> NoneType

__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.

__str__(...) from builtins.PyCapsule
__str__(rosetta.core.scoring.motif.ResPairMotif) -> str

aa1(...) from builtins.PyCapsule
aa1(rosetta.core.scoring.motif.ResPairMotif) -> str

aa2(...) from builtins.PyCapsule
aa2(rosetta.core.scoring.motif.ResPairMotif) -> str

addcount(...) from builtins.PyCapsule
addcount(rosetta.core.scoring.motif.ResPairMotif) -> NoneType

assign(...) from builtins.PyCapsule
assign(self : rosetta.core.scoring.motif.ResPairMotif,  : rosetta.core.scoring.motif.ResPairMotif) -> rosetta.core.scoring.motif.ResPairMotif

bfac1(...) from builtins.PyCapsule
bfac1(*args, **kwargs) Overloaded function. 1. bfac1(rosetta.core.scoring.motif.ResPairMotif) -> float 2. bfac1(self : rosetta.core.scoring.motif.ResPairMotif, bfac1 : float) -> NoneType

bfac2(...) from builtins.PyCapsule
bfac2(*args, **kwargs) Overloaded function. 1. bfac2(rosetta.core.scoring.motif.ResPairMotif) -> float 2. bfac2(self : rosetta.core.scoring.motif.ResPairMotif, bfac2 : float) -> NoneType

check_lig_code(...) from builtins.PyCapsule
check_lig_code(self : rosetta.core.scoring.motif.ResPairMotif, qlig : str) -> bool

check_pdb_code(...) from builtins.PyCapsule
check_pdb_code(self : rosetta.core.scoring.motif.ResPairMotif, qpdb : str) -> bool

chi1(...) from builtins.PyCapsule
chi1(self : rosetta.core.scoring.motif.ResPairMotif, ichi : int) -> float

chi11(...) from builtins.PyCapsule
chi11(rosetta.core.scoring.motif.ResPairMotif) -> float

chi12(...) from builtins.PyCapsule
chi12(rosetta.core.scoring.motif.ResPairMotif) -> float

chi13(...) from builtins.PyCapsule
chi13(rosetta.core.scoring.motif.ResPairMotif) -> float

chi14(...) from builtins.PyCapsule
chi14(rosetta.core.scoring.motif.ResPairMotif) -> float

chi2(...) from builtins.PyCapsule
chi2(self : rosetta.core.scoring.motif.ResPairMotif, ichi : int) -> float

chi21(...) from builtins.PyCapsule
chi21(rosetta.core.scoring.motif.ResPairMotif) -> float

chi22(...) from builtins.PyCapsule
chi22(rosetta.core.scoring.motif.ResPairMotif) -> float

chi23(...) from builtins.PyCapsule
chi23(rosetta.core.scoring.motif.ResPairMotif) -> float

chi24(...) from builtins.PyCapsule
chi24(rosetta.core.scoring.motif.ResPairMotif) -> float

count(...) from builtins.PyCapsule
count(*args, **kwargs) Overloaded function. 1. count(rosetta.core.scoring.motif.ResPairMotif) -> int 2. count(self : rosetta.core.scoring.motif.ResPairMotif, count : int) -> NoneType

dist2(...) from builtins.PyCapsule
dist2(rosetta.core.scoring.motif.ResPairMotif) -> float

dssp1(...) from builtins.PyCapsule
dssp1(rosetta.core.scoring.motif.ResPairMotif) -> str

dssp2(...) from builtins.PyCapsule
dssp2(rosetta.core.scoring.motif.ResPairMotif) -> str

dump_aligned_motif(...) from builtins.PyCapsule
dump_aligned_motif(*args, **kwargs) Overloaded function. 1. dump_aligned_motif(self : rosetta.core.scoring.motif.ResPairMotif, fn : str, pose1 : rosetta.core.pose.Pose, ir : int, pose2 : rosetta.core.pose.Pose, jr : int, aotmno : int) -> float 2. dump_aligned_motif(self : rosetta.core.scoring.motif.ResPairMotif, fn : str, pose1 : rosetta.core.pose.Pose, ir : int, pose2 : rosetta.core.pose.Pose, jr : int, aotmno : int, num : int) -> float 3. dump_aligned_motif(self : rosetta.core.scoring.motif.ResPairMotif, fn : str, pose1 : rosetta.core.pose.Pose, ir : int, pose2 : rosetta.core.pose.Pose, jr : int, aotmno : int, num : int, xforms : rosetta.numeric.Xforms) -> float 4. dump_aligned_motif(self : rosetta.core.scoring.motif.ResPairMotif, fn : str, pose : rosetta.core.pose.Pose, ir : int, jr : int, aotmno : int) -> float 5. dump_aligned_motif(self : rosetta.core.scoring.motif.ResPairMotif, fn : str, pose : rosetta.core.pose.Pose, ir : int, jr : int, aotmno : int, num : int) -> float 6. dump_aligned_motif(self : rosetta.core.scoring.motif.ResPairMotif, fn : str, pose : rosetta.core.pose.Pose, ir : int, jr : int, aotmno : int, num : int, xforms : rosetta.numeric.Xforms) -> float 7. dump_aligned_motif(self : rosetta.core.scoring.motif.ResPairMotif, fn : str, pose1 : rosetta.core.pose.Pose, ir : int, pose2 : rosetta.core.pose.Pose, jr : int) -> float 8. dump_aligned_motif(self : rosetta.core.scoring.motif.ResPairMotif, fn : str, pose1 : rosetta.core.pose.Pose, ir : int, pose2 : rosetta.core.pose.Pose, jr : int, num : int) -> float 9. dump_aligned_motif(self : rosetta.core.scoring.motif.ResPairMotif, fn : str, pose1 : rosetta.core.pose.Pose, ir : int, pose2 : rosetta.core.pose.Pose, jr : int, num : int, xforms : rosetta.numeric.Xforms) -> float 10. dump_aligned_motif(self : rosetta.core.scoring.motif.ResPairMotif, fn : str, pose : rosetta.core.pose.Pose, ir : int, jr : int) -> float 11. dump_aligned_motif(self : rosetta.core.scoring.motif.ResPairMotif, fn : str, pose : rosetta.core.pose.Pose, ir : int, jr : int, num : int) -> float 12. dump_aligned_motif(self : rosetta.core.scoring.motif.ResPairMotif, fn : str, pose : rosetta.core.pose.Pose, ir : int, jr : int, num : int, xforms : rosetta.numeric.Xforms) -> float

dump_pdb(...) from builtins.PyCapsule
dump_pdb(*args, **kwargs) Overloaded function. 1. dump_pdb(rosetta.core.scoring.motif.ResPairMotif) -> NoneType 2. dump_pdb(self : rosetta.core.scoring.motif.ResPairMotif, fname : str) -> NoneType 3. dump_pdb(self : rosetta.core.scoring.motif.ResPairMotif, fname : str, tag : str) -> NoneType

fa_atr(...) from builtins.PyCapsule
fa_atr(*args, **kwargs) Overloaded function. 1. fa_atr(rosetta.core.scoring.motif.ResPairMotif) -> float 2. fa_atr(self : rosetta.core.scoring.motif.ResPairMotif, fa_atr : float) -> NoneType

fa_atr_bb(...) from builtins.PyCapsule
fa_atr_bb(*args, **kwargs) Overloaded function. 1. fa_atr_bb(rosetta.core.scoring.motif.ResPairMotif) -> float 2. fa_atr_bb(self : rosetta.core.scoring.motif.ResPairMotif, fa_atr_bb : float) -> NoneType

fa_atr_sc_bb(...) from builtins.PyCapsule
fa_atr_sc_bb(*args, **kwargs) Overloaded function. 1. fa_atr_sc_bb(rosetta.core.scoring.motif.ResPairMotif) -> float 2. fa_atr_sc_bb(self : rosetta.core.scoring.motif.ResPairMotif, fa_atr_sc_bb : float) -> NoneType

fill_pose_with_motif(...) from builtins.PyCapsule
fill_pose_with_motif(*args, **kwargs) Overloaded function. 1. fill_pose_with_motif(self : rosetta.core.scoring.motif.ResPairMotif, pose : rosetta.core.pose.Pose) -> NoneType 2. fill_pose_with_motif(self : rosetta.core.scoring.motif.ResPairMotif, pose : rosetta.core.pose.Pose, ir : int) -> NoneType 3. fill_pose_with_motif(self : rosetta.core.scoring.motif.ResPairMotif, pose : rosetta.core.pose.Pose, ir : int, jr : int) -> NoneType

filter(...) from builtins.PyCapsule
filter(*args, **kwargs) Overloaded function. 1. filter(rosetta.core.scoring.motif.ResPairMotif) -> bool 2. filter(self : rosetta.core.scoring.motif.ResPairMotif, stat : rosetta.core.scoring.motif.RPM_FilterStats) -> bool

get_pose(...) from builtins.PyCapsule
get_pose(*args, **kwargs) Overloaded function. 1. get_pose(rosetta.core.scoring.motif.ResPairMotif) -> rosetta.core.pose.Pose 2. get_pose(self : rosetta.core.scoring.motif.ResPairMotif, ir : int) -> rosetta.core.pose.Pose 3. get_pose(self : rosetta.core.scoring.motif.ResPairMotif, ir : int, jr : int) -> rosetta.core.pose.Pose

hb_bb(...) from builtins.PyCapsule
hb_bb(*args, **kwargs) Overloaded function. 1. hb_bb(rosetta.core.scoring.motif.ResPairMotif) -> float 2. hb_bb(self : rosetta.core.scoring.motif.ResPairMotif, hb_bb : float) -> NoneType

hb_bb_sc(...) from builtins.PyCapsule
hb_bb_sc(*args, **kwargs) Overloaded function. 1. hb_bb_sc(rosetta.core.scoring.motif.ResPairMotif) -> float 2. hb_bb_sc(self : rosetta.core.scoring.motif.ResPairMotif, hb_bb_sc : float) -> NoneType

hb_sc(...) from builtins.PyCapsule
hb_sc(*args, **kwargs) Overloaded function. 1. hb_sc(rosetta.core.scoring.motif.ResPairMotif) -> float 2. hb_sc(self : rosetta.core.scoring.motif.ResPairMotif, hb_sc : float) -> NoneType

is_reversible(...) from builtins.PyCapsule
is_reversible(rosetta.core.scoring.motif.ResPairMotif) -> bool

nbrs1(...) from builtins.PyCapsule
nbrs1(*args, **kwargs) Overloaded function. 1. nbrs1(rosetta.core.scoring.motif.ResPairMotif) -> float 2. nbrs1(self : rosetta.core.scoring.motif.ResPairMotif, nbrs : float) -> NoneType

nbrs2(...) from builtins.PyCapsule
nbrs2(*args, **kwargs) Overloaded function. 1. nbrs2(rosetta.core.scoring.motif.ResPairMotif) -> float 2. nbrs2(self : rosetta.core.scoring.motif.ResPairMotif, nbrs : float) -> NoneType

pdb(...) from builtins.PyCapsule
pdb(rosetta.core.scoring.motif.ResPairMotif) -> str

reset(...) from builtins.PyCapsule
reset(rosetta.core.scoring.motif.ResPairMotif) -> NoneType

resi1(...) from builtins.PyCapsule
resi1(rosetta.core.scoring.motif.ResPairMotif) -> int

resi2(...) from builtins.PyCapsule
resi2(rosetta.core.scoring.motif.ResPairMotif) -> int

reverse_in_place(...) from builtins.PyCapsule
reverse_in_place(rosetta.core.scoring.motif.ResPairMotif) -> rosetta.core.scoring.motif.ResPairMotif

reverse_in_place_unsafe(...) from builtins.PyCapsule
reverse_in_place_unsafe(rosetta.core.scoring.motif.ResPairMotif) -> rosetta.core.scoring.motif.ResPairMotif

reversed(...) from builtins.PyCapsule
reversed(rosetta.core.scoring.motif.ResPairMotif) -> rosetta.core.scoring.motif.ResPairMotif

rt(...) from builtins.PyCapsule
rt(*args, **kwargs) Overloaded function. 1. rt(rosetta.core.scoring.motif.ResPairMotif) -> rosetta.utility.fixedsizearray1_double_6_t 2. rt(self : rosetta.core.scoring.motif.ResPairMotif, rt : rosetta.utility.fixedsizearray1_double_6_t) -> NoneType

score(...) from builtins.PyCapsule
score(rosetta.core.scoring.motif.ResPairMotif) -> float

ss1(...) from builtins.PyCapsule
ss1(rosetta.core.scoring.motif.ResPairMotif) -> str

ss2(...) from builtins.PyCapsule
ss2(rosetta.core.scoring.motif.ResPairMotif) -> str

tag(...) from builtins.PyCapsule
tag(rosetta.core.scoring.motif.ResPairMotif) -> str

type(...) from builtins.PyCapsule
type(*args, **kwargs) Overloaded function. 1. type(rosetta.core.scoring.motif.ResPairMotif) -> rosetta.core.scoring.motif.RPM_Type 2. type(self : rosetta.core.scoring.motif.ResPairMotif, type : rosetta.core.scoring.motif.RPM_Type) -> NoneType

type1(...) from builtins.PyCapsule
type1(rosetta.core.scoring.motif.ResPairMotif) -> rosetta.core.scoring.motif.RM_Type

type2(...) from builtins.PyCapsule
type2(rosetta.core.scoring.motif.ResPairMotif) -> rosetta.core.scoring.motif.RM_Type

xform(...) from builtins.PyCapsule
xform(*args, **kwargs) Overloaded function. 1. xform(rosetta.core.scoring.motif.ResPairMotif) -> rosetta.numeric.xyzTransform_double_t 2. xform(self : rosetta.core.scoring.motif.ResPairMotif, _xform : rosetta.numeric.xyzTransform_double_t) -> NoneType

class ResPairMotifMetaBinner(builtins.object)

    Methods defined here:

__init__(...) from builtins.PyCapsule
__init__(rosetta.core.scoring.motif.ResPairMotifMetaBinner) -> NoneType

__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.

bin0_of_real(...) from builtins.PyCapsule
bin0_of_real(self : rosetta.core.scoring.motif.ResPairMotifMetaBinner, val : float, breaks : rosetta.utility.vector1_double) -> int

hash_to_labal(...) from builtins.PyCapsule
hash_to_labal(self : rosetta.core.scoring.motif.ResPairMotifMetaBinner, k : int) -> str

motif_bin_hash(...) from builtins.PyCapsule
motif_bin_hash(self : rosetta.core.scoring.motif.ResPairMotifMetaBinner, r : rosetta.core.scoring.motif.ResPairMotif) -> int

motif_bin_label(...) from builtins.PyCapsule
motif_bin_label(self : rosetta.core.scoring.motif.ResPairMotifMetaBinner, r : rosetta.core.scoring.motif.ResPairMotif) -> str

Data descriptors defined here:

sep_aa1_

sep_aa2_

sep_aa_

sep_bfac_

sep_dist_

sep_dssp_

sep_hb_

sep_lj_

sep_nbrs_

sep_ss_

class ResPairMotifQuery(builtins.object)

    Methods defined here:

__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs) Overloaded function. 1. __init__(self : rosetta.core.scoring.motif.ResPairMotifQuery, pose1 : rosetta.core.pose.Pose) -> NoneType 2. __init__(self : rosetta.core.scoring.motif.ResPairMotifQuery, pose1 : rosetta.core.pose.Pose, pose2 : rosetta.core.pose.Pose) -> NoneType

__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.

__str__(...) from builtins.PyCapsule
__str__(rosetta.core.scoring.motif.ResPairMotifQuery) -> str

auto_clash(...) from builtins.PyCapsule
auto_clash(*args, **kwargs) Overloaded function. 1. auto_clash(rosetta.core.scoring.motif.ResPairMotifQuery) -> bool 2. auto_clash(rosetta.core.scoring.motif.ResPairMotifQuery) -> bool

clash_check(...) from builtins.PyCapsule
clash_check(*args, **kwargs) Overloaded function. 1. clash_check(rosetta.core.scoring.motif.ResPairMotifQuery) -> bool 2. clash_check(rosetta.core.scoring.motif.ResPairMotifQuery) -> bool

copy_opts_swapped(...) from builtins.PyCapsule
copy_opts_swapped(self : rosetta.core.scoring.motif.ResPairMotifQuery, other : rosetta.core.scoring.motif.ResPairMotifQuery) -> NoneType

inter_clash1(...) from builtins.PyCapsule
inter_clash1(*args, **kwargs) Overloaded function. 1. inter_clash1(rosetta.core.scoring.motif.ResPairMotifQuery) -> rosetta.numeric.geometry.hashing.xyzStripeHash 2. inter_clash1(rosetta.core.scoring.motif.ResPairMotifQuery) -> rosetta.numeric.geometry.hashing.xyzStripeHash

inter_clash1_xform(...) from builtins.PyCapsule
inter_clash1_xform(*args, **kwargs) Overloaded function. 1. inter_clash1_xform(rosetta.core.scoring.motif.ResPairMotifQuery) -> rosetta.numeric.xyzTransform_double_t 2. inter_clash1_xform(rosetta.core.scoring.motif.ResPairMotifQuery) -> rosetta.numeric.xyzTransform_double_t

inter_clash2(...) from builtins.PyCapsule
inter_clash2(*args, **kwargs) Overloaded function. 1. inter_clash2(rosetta.core.scoring.motif.ResPairMotifQuery) -> rosetta.numeric.geometry.hashing.xyzStripeHash 2. inter_clash2(rosetta.core.scoring.motif.ResPairMotifQuery) -> rosetta.numeric.geometry.hashing.xyzStripeHash

inter_clash2_xform(...) from builtins.PyCapsule
inter_clash2_xform(*args, **kwargs) Overloaded function. 1. inter_clash2_xform(rosetta.core.scoring.motif.ResPairMotifQuery) -> rosetta.numeric.xyzTransform_double_t 2. inter_clash2_xform(rosetta.core.scoring.motif.ResPairMotifQuery) -> rosetta.numeric.xyzTransform_double_t

interface_only(...) from builtins.PyCapsule
interface_only(*args, **kwargs) Overloaded function. 1. interface_only(rosetta.core.scoring.motif.ResPairMotifQuery) -> bool 2. interface_only(rosetta.core.scoring.motif.ResPairMotifQuery) -> bool

match_aa1(...) from builtins.PyCapsule
match_aa1(*args, **kwargs) Overloaded function. 1. match_aa1(rosetta.core.scoring.motif.ResPairMotifQuery) -> bool 2. match_aa1(rosetta.core.scoring.motif.ResPairMotifQuery) -> bool

match_aa2(...) from builtins.PyCapsule
match_aa2(*args, **kwargs) Overloaded function. 1. match_aa2(rosetta.core.scoring.motif.ResPairMotifQuery) -> bool 2. match_aa2(rosetta.core.scoring.motif.ResPairMotifQuery) -> bool

match_chi_rmsd(...) from builtins.PyCapsule
match_chi_rmsd(*args, **kwargs) Overloaded function. 1. match_chi_rmsd(rosetta.core.scoring.motif.ResPairMotifQuery) -> float 2. match_chi_rmsd(rosetta.core.scoring.motif.ResPairMotifQuery) -> float

match_radius(...) from builtins.PyCapsule
match_radius(*args, **kwargs) Overloaded function. 1. match_radius(rosetta.core.scoring.motif.ResPairMotifQuery) -> float 2. match_radius(rosetta.core.scoring.motif.ResPairMotifQuery) -> float

match_ss1(...) from builtins.PyCapsule
match_ss1(*args, **kwargs) Overloaded function. 1. match_ss1(rosetta.core.scoring.motif.ResPairMotifQuery) -> bool 2. match_ss1(rosetta.core.scoring.motif.ResPairMotifQuery) -> bool

match_ss2(...) from builtins.PyCapsule
match_ss2(*args, **kwargs) Overloaded function. 1. match_ss2(rosetta.core.scoring.motif.ResPairMotifQuery) -> bool 2. match_ss2(rosetta.core.scoring.motif.ResPairMotifQuery) -> bool

max_ca_dis2(...) from builtins.PyCapsule
max_ca_dis2(*args, **kwargs) Overloaded function. 1. max_ca_dis2(rosetta.core.scoring.motif.ResPairMotifQuery) -> float 2. max_ca_dis2(rosetta.core.scoring.motif.ResPairMotifQuery) -> float

overlap1(...) from builtins.PyCapsule
overlap1(*args, **kwargs) Overloaded function. 1. overlap1(rosetta.core.scoring.motif.ResPairMotifQuery) -> rosetta.core.scoring.motif.MotifMatchOverlapReq 2. overlap1(rosetta.core.scoring.motif.ResPairMotifQuery) -> rosetta.core.scoring.motif.MotifMatchOverlapReq

overlap2(...) from builtins.PyCapsule
overlap2(*args, **kwargs) Overloaded function. 1. overlap2(rosetta.core.scoring.motif.ResPairMotifQuery) -> rosetta.core.scoring.motif.MotifMatchOverlapReq 2. overlap2(rosetta.core.scoring.motif.ResPairMotifQuery) -> rosetta.core.scoring.motif.MotifMatchOverlapReq

pose1(...) from builtins.PyCapsule
pose1(rosetta.core.scoring.motif.ResPairMotifQuery) -> rosetta.core.pose.Pose

pose2(...) from builtins.PyCapsule
pose2(rosetta.core.scoring.motif.ResPairMotifQuery) -> rosetta.core.pose.Pose

useres1(...) from builtins.PyCapsule
useres1(*args, **kwargs) Overloaded function. 1. useres1(rosetta.core.scoring.motif.ResPairMotifQuery) -> rosetta.utility.vector1_bool 2. useres1(rosetta.core.scoring.motif.ResPairMotifQuery) -> rosetta.utility.vector1_bool

useres1_ph(...) from builtins.PyCapsule
useres1_ph(*args, **kwargs) Overloaded function. 1. useres1_ph(rosetta.core.scoring.motif.ResPairMotifQuery) -> rosetta.utility.vector1_bool 2. useres1_ph(rosetta.core.scoring.motif.ResPairMotifQuery) -> rosetta.utility.vector1_bool

useres1_po(...) from builtins.PyCapsule
useres1_po(*args, **kwargs) Overloaded function. 1. useres1_po(rosetta.core.scoring.motif.ResPairMotifQuery) -> rosetta.utility.vector1_bool 2. useres1_po(rosetta.core.scoring.motif.ResPairMotifQuery) -> rosetta.utility.vector1_bool

useres2(...) from builtins.PyCapsule
useres2(*args, **kwargs) Overloaded function. 1. useres2(rosetta.core.scoring.motif.ResPairMotifQuery) -> rosetta.utility.vector1_bool 2. useres2(rosetta.core.scoring.motif.ResPairMotifQuery) -> rosetta.utility.vector1_bool

useres2_ph(...) from builtins.PyCapsule
useres2_ph(*args, **kwargs) Overloaded function. 1. useres2_ph(rosetta.core.scoring.motif.ResPairMotifQuery) -> rosetta.utility.vector1_bool 2. useres2_ph(rosetta.core.scoring.motif.ResPairMotifQuery) -> rosetta.utility.vector1_bool

useres2_po(...) from builtins.PyCapsule
useres2_po(*args, **kwargs) Overloaded function. 1. useres2_po(rosetta.core.scoring.motif.ResPairMotifQuery) -> rosetta.utility.vector1_bool 2. useres2_po(rosetta.core.scoring.motif.ResPairMotifQuery) -> rosetta.utility.vector1_bool

class ResPairMotifs(rosetta.utility.vector1_core_scoring_motif_ResPairMotif)


Method resolution order:

ResPairMotifs

rosetta.utility.vector1_core_scoring_motif_ResPairMotif

builtins.object

Methods defined here:

__init__(...) from builtins.PyCapsule
__init__(rosetta.core.scoring.motif.ResPairMotifs) -> NoneType

__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.

add_reverse_motifs(...) from builtins.PyCapsule
add_reverse_motifs(rosetta.core.scoring.motif.ResPairMotifs) -> NoneType

assign(...) from builtins.PyCapsule
assign(self : rosetta.core.scoring.motif.ResPairMotifs,  : rosetta.core.scoring.motif.ResPairMotifs) -> rosetta.core.scoring.motif.ResPairMotifs

filter_structurally_identical_motifs(...) from builtins.PyCapsule
filter_structurally_identical_motifs(rosetta.core.scoring.motif.ResPairMotifs) -> NoneType

filter_structurally_similar_motifs(...) from builtins.PyCapsule
filter_structurally_similar_motifs(self : rosetta.core.scoring.motif.ResPairMotifs, cart_size : float, cart_resl : float, ang_resl : float) -> NoneType

Methods inherited from rosetta.utility.vector1_core_scoring_motif_ResPairMotif:

__bool__(...) from builtins.PyCapsule
__bool__(rosetta.utility.vector1_core_scoring_motif_ResPairMotif) -> bool Check whether the list is nonempty

__getitem__(...) from builtins.PyCapsule
__getitem__(rosetta.utility.vector1_core_scoring_motif_ResPairMotif, int) -> core::scoring::motif::ResPairMotif

__iter__(...) from builtins.PyCapsule
__iter__(rosetta.utility.vector1_core_scoring_motif_ResPairMotif) -> iterator

__len__(...) from builtins.PyCapsule
__len__(rosetta.utility.vector1_core_scoring_motif_ResPairMotif) -> int

__repr__(...) from builtins.PyCapsule
__repr__(rosetta.utility.vector1_core_scoring_motif_ResPairMotif) -> str

__setitem__(...) from builtins.PyCapsule
__setitem__(rosetta.utility.vector1_core_scoring_motif_ResPairMotif, int, core::scoring::motif::ResPairMotif) -> NoneType

append(...) from builtins.PyCapsule
append(rosetta.utility.vector1_core_scoring_motif_ResPairMotif, core::scoring::motif::ResPairMotif) -> NoneType adds an element to the end

back(...) from builtins.PyCapsule
back(rosetta.utility.vector1_core_scoring_motif_ResPairMotif) -> core::scoring::motif::ResPairMotif access the last element

capacity(...) from builtins.PyCapsule
capacity(std::vector<core::scoring::motif::ResPairMotif, std::allocator<core::scoring::motif::ResPairMotif> >) -> int returns the number of elements that can be held in currently allocated storage

clear(...) from builtins.PyCapsule
clear(std::vector<core::scoring::motif::ResPairMotif, std::allocator<core::scoring::motif::ResPairMotif> >) -> NoneType clears the contents

erase(...) from builtins.PyCapsule
erase(rosetta.utility.vector1_core_scoring_motif_ResPairMotif, int) -> NoneType erases element at index

extend = _vector_extend_func(vec, othervec)
# Vector compatibility: Adding 'extend' to all utility.vector* functions

front(...) from builtins.PyCapsule
front(rosetta.utility.vector1_core_scoring_motif_ResPairMotif) -> core::scoring::motif::ResPairMotif access the first element

l(...) from builtins.PyCapsule
l(rosetta.utility.vector1_core_scoring_motif_ResPairMotif) -> int lower index

max_size(...) from builtins.PyCapsule
max_size(std::vector<core::scoring::motif::ResPairMotif, std::allocator<core::scoring::motif::ResPairMotif> >) -> int returns the maximum possible number of elements

pop(...) from builtins.PyCapsule
pop(*args, **kwargs) Overloaded function. 1. pop(rosetta.utility.vector1_core_scoring_motif_ResPairMotif) -> core::scoring::motif::ResPairMotif remove and return last item 2. pop(rosetta.utility.vector1_core_scoring_motif_ResPairMotif, int) -> core::scoring::motif::ResPairMotif remove and return item at index

reserve(...) from builtins.PyCapsule
reserve(std::vector<core::scoring::motif::ResPairMotif, std::allocator<core::scoring::motif::ResPairMotif> >, int) -> NoneType reserves storage

resize(...) from builtins.PyCapsule
resize(rosetta.utility.vector1_core_scoring_motif_ResPairMotif, int) -> NoneType changes the number of elements stored

shrink_to_fit(...) from builtins.PyCapsule
shrink_to_fit(std::vector<core::scoring::motif::ResPairMotif, std::allocator<core::scoring::motif::ResPairMotif> >) -> NoneType reduces memory usage by freeing unused memory

u(...) from builtins.PyCapsule
u(rosetta.utility.vector1_core_scoring_motif_ResPairMotif) -> int upper index

class XformScore(builtins.object)

    Methods defined here:

__init__(...) from builtins.PyCapsule
__init__(self : rosetta.core.scoring.motif.XformScore, cart_resl : float, ang_resl : float) -> NoneType

__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.

__str__(...) from builtins.PyCapsule
__str__(rosetta.core.scoring.motif.XformScore) -> str

add_score(...) from builtins.PyCapsule
add_score(self : rosetta.core.scoring.motif.XformScore,  : int, count : float) -> NoneType

aggregate_add(...) from builtins.PyCapsule
aggregate_add(self : rosetta.core.scoring.motif.XformScore, other : rosetta.core.scoring.motif.XformScore) -> NoneType

aggregate_max(...) from builtins.PyCapsule
aggregate_max(self : rosetta.core.scoring.motif.XformScore, other : rosetta.core.scoring.motif.XformScore) -> NoneType

assign(...) from builtins.PyCapsule
assign(self : rosetta.core.scoring.motif.XformScore,  : rosetta.core.scoring.motif.XformScore) -> rosetta.core.scoring.motif.XformScore

bin_index(...) from builtins.PyCapsule
bin_index(self : rosetta.core.scoring.motif.XformScore, rt : rosetta.utility.fixedsizearray1_double_6_t) -> int

cart_size(...) from builtins.PyCapsule
cart_size(rosetta.core.scoring.motif.XformScore) -> float

clear(...) from builtins.PyCapsule
clear(rosetta.core.scoring.motif.XformScore) -> NoneType

max_score(...) from builtins.PyCapsule
max_score(self : rosetta.core.scoring.motif.XformScore,  : int, count : float) -> NoneType

num_bins(...) from builtins.PyCapsule
num_bins(rosetta.core.scoring.motif.XformScore) -> int

num_possible_bins(...) from builtins.PyCapsule
num_possible_bins(rosetta.core.scoring.motif.XformScore) -> int

prune_small_bins(...) from builtins.PyCapsule
prune_small_bins(self : rosetta.core.scoring.motif.XformScore, thresh : float) -> NoneType

read_binary(...) from builtins.PyCapsule
read_binary(*args, **kwargs) Overloaded function. 1. read_binary(xs : rosetta.core.scoring.motif.XformScore, fname : str) -> bool 2. read_binary(xs : rosetta.core.scoring.motif.XformScore, fname : str, clearme : bool) -> bool 3. read_binary(xs : rosetta.core.scoring.motif.XformScore, fname : str, clearme : bool, wt : float) -> bool 4. read_binary(xs : rosetta.core.scoring.motif.XformScore, fnames : rosetta.utility.vector1_std_string) -> bool 5. read_binary(xs : rosetta.core.scoring.motif.XformScore, fnames : rosetta.utility.vector1_std_string, wt : float) -> bool

sanity_check(...) from builtins.PyCapsule
sanity_check(rosetta.core.scoring.motif.XformScore) -> NoneType

score_of_bin(...) from builtins.PyCapsule
score_of_bin(*args, **kwargs) Overloaded function. 1. score_of_bin(self : rosetta.core.scoring.motif.XformScore, xform : rosetta.utility.fixedsizearray1_double_6_t) -> float 2. score_of_bin(self : rosetta.core.scoring.motif.XformScore, xform : rosetta.numeric.xyzTransform_double_t) -> float 3. score_of_bin(self : rosetta.core.scoring.motif.XformScore, key : int) -> float

score_of_bin_normalized(...) from builtins.PyCapsule
score_of_bin_normalized(self : rosetta.core.scoring.motif.XformScore, xform : rosetta.utility.fixedsizearray1_double_6_t) -> float

set_score(...) from builtins.PyCapsule
set_score(self : rosetta.core.scoring.motif.XformScore,  : int, count : float) -> NoneType

tot_score(...) from builtins.PyCapsule
tot_score(rosetta.core.scoring.motif.XformScore) -> float

write_binary(...) from builtins.PyCapsule
write_binary(self : rosetta.core.scoring.motif.XformScore, fname : str) -> bool

Data descriptors defined here:

angle_resl_

cart_resl_

cart_size_

hasher_

scores_

class Xfrag(builtins.object)

    Methods defined here:

__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs) Overloaded function. 1. __init__(rosetta.core.scoring.motif.Xfrag) -> NoneType 2. __init__(self : rosetta.core.scoring.motif.Xfrag, _rt : rosetta.utility.fixedsizearray1_double_6_t, _position : int, _size : int, _sscomp : str, _bfac : float, _burial : float) -> NoneType

__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.

__str__(...) from builtins.PyCapsule
__str__(rosetta.core.scoring.motif.Xfrag) -> str

bfac(...) from builtins.PyCapsule
bfac(*args, **kwargs) Overloaded function. 1. bfac(rosetta.core.scoring.motif.Xfrag) -> float 2. bfac(self : rosetta.core.scoring.motif.Xfrag, _bfac : float) -> NoneType

burial(...) from builtins.PyCapsule
burial(*args, **kwargs) Overloaded function. 1. burial(rosetta.core.scoring.motif.Xfrag) -> float 2. burial(self : rosetta.core.scoring.motif.Xfrag, _burial : float) -> NoneType

ex1(...) from builtins.PyCapsule
ex1(*args, **kwargs) Overloaded function. 1. ex1(rosetta.core.scoring.motif.Xfrag) -> float 2. ex1(self : rosetta.core.scoring.motif.Xfrag, _ex1 : float) -> NoneType

ex2(...) from builtins.PyCapsule
ex2(*args, **kwargs) Overloaded function. 1. ex2(rosetta.core.scoring.motif.Xfrag) -> float 2. ex2(self : rosetta.core.scoring.motif.Xfrag, _ex2 : float) -> NoneType

ex3(...) from builtins.PyCapsule
ex3(*args, **kwargs) Overloaded function. 1. ex3(rosetta.core.scoring.motif.Xfrag) -> float 2. ex3(self : rosetta.core.scoring.motif.Xfrag, _ex3 : float) -> NoneType

ex4(...) from builtins.PyCapsule
ex4(*args, **kwargs) Overloaded function. 1. ex4(rosetta.core.scoring.motif.Xfrag) -> float 2. ex4(self : rosetta.core.scoring.motif.Xfrag, _ex4 : float) -> NoneType

insert(...) from builtins.PyCapsule
insert(self : rosetta.core.scoring.motif.Xfrag, pose : rosetta.core.pose.Pose, xfres : rosetta.utility.vector1_core_scoring_motif_Xfres, lowres : int, highres : int) -> NoneType

position(...) from builtins.PyCapsule
position(*args, **kwargs) Overloaded function. 1. position(rosetta.core.scoring.motif.Xfrag) -> int 2. position(self : rosetta.core.scoring.motif.Xfrag, _position : int) -> NoneType

rt6(...) from builtins.PyCapsule
rt6(*args, **kwargs) Overloaded function. 1. rt6(rosetta.core.scoring.motif.Xfrag) -> rosetta.utility.fixedsizearray1_double_6_t 2. rt6(self : rosetta.core.scoring.motif.Xfrag, _rt6 : rosetta.utility.fixedsizearray1_double_6_t) -> NoneType

size(...) from builtins.PyCapsule
size(*args, **kwargs) Overloaded function. 1. size(rosetta.core.scoring.motif.Xfrag) -> int 2. size(self : rosetta.core.scoring.motif.Xfrag, _size : int) -> NoneType

sscomp(...) from builtins.PyCapsule
sscomp(*args, **kwargs) Overloaded function. 1. sscomp(rosetta.core.scoring.motif.Xfrag) -> str 2. sscomp(self : rosetta.core.scoring.motif.Xfrag, _sscomp : str) -> NoneType

class XfragSet(builtins.object)

    Methods defined here:

__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs) Overloaded function. 1. __init__(rosetta.core.scoring.motif.XfragSet) -> NoneType doc 2. __init__(rosetta.core.scoring.motif.XfragSet, float) -> NoneType doc 3. __init__(self : rosetta.core.scoring.motif.XfragSet, cartresl : float, angleresl : float) -> NoneType

__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.

class Xfres(builtins.object)

    Methods defined here:

__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs) Overloaded function. 1. __init__(rosetta.core.scoring.motif.Xfres) -> NoneType 2. __init__(rosetta.core.scoring.motif.Xfres, str, str, float, float, float) -> NoneType doc 3. __init__(rosetta.core.scoring.motif.Xfres, str, str, float, float, float, float) -> NoneType doc 4. __init__(rosetta.core.scoring.motif.Xfres, str, str, float, float, float, float, float) -> NoneType doc 5. __init__(rosetta.core.scoring.motif.Xfres, str, str, float, float, float, float, float, float) -> NoneType doc 6. __init__(self : rosetta.core.scoring.motif.Xfres, aa : str, ss : str, phi : float, psi : float, omg : float, chi1 : float, chi2 : float, chi3 : float, chi4 : float) -> NoneType

__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.

__str__(...) from builtins.PyCapsule
__str__(rosetta.core.scoring.motif.Xfres) -> str

aa(...) from builtins.PyCapsule
aa(*args, **kwargs) Overloaded function. 1. aa(rosetta.core.scoring.motif.Xfres) -> str 2. aa(self : rosetta.core.scoring.motif.Xfres, aa : str) -> NoneType

chi1(...) from builtins.PyCapsule
chi1(*args, **kwargs) Overloaded function. 1. chi1(rosetta.core.scoring.motif.Xfres) -> float 2. chi1(self : rosetta.core.scoring.motif.Xfres, chi1 : float) -> NoneType

chi2(...) from builtins.PyCapsule
chi2(*args, **kwargs) Overloaded function. 1. chi2(rosetta.core.scoring.motif.Xfres) -> float 2. chi2(self : rosetta.core.scoring.motif.Xfres, chi2 : float) -> NoneType

chi3(...) from builtins.PyCapsule
chi3(*args, **kwargs) Overloaded function. 1. chi3(rosetta.core.scoring.motif.Xfres) -> float 2. chi3(self : rosetta.core.scoring.motif.Xfres, chi3 : float) -> NoneType

chi4(...) from builtins.PyCapsule
chi4(*args, **kwargs) Overloaded function. 1. chi4(rosetta.core.scoring.motif.Xfres) -> float 2. chi4(self : rosetta.core.scoring.motif.Xfres, chi4 : float) -> NoneType

omg(...) from builtins.PyCapsule
omg(*args, **kwargs) Overloaded function. 1. omg(rosetta.core.scoring.motif.Xfres) -> float 2. omg(self : rosetta.core.scoring.motif.Xfres, _omg : float) -> NoneType

phi(...) from builtins.PyCapsule
phi(*args, **kwargs) Overloaded function. 1. phi(rosetta.core.scoring.motif.Xfres) -> float 2. phi(self : rosetta.core.scoring.motif.Xfres, _phi : float) -> NoneType

place_sidechain_in_pose(...) from builtins.PyCapsule
place_sidechain_in_pose(self : rosetta.core.scoring.motif.Xfres, pose : rosetta.core.pose.Pose, ir : int) -> NoneType

psi(...) from builtins.PyCapsule
psi(*args, **kwargs) Overloaded function. 1. psi(rosetta.core.scoring.motif.Xfres) -> float 2. psi(self : rosetta.core.scoring.motif.Xfres, _psi : float) -> NoneType

ss(...) from builtins.PyCapsule
ss(*args, **kwargs) Overloaded function. 1. ss(rosetta.core.scoring.motif.Xfres) -> str 2. ss(self : rosetta.core.scoring.motif.Xfres, ss : str) -> NoneType

Functions

HACK_dump_helices(...) method of builtins.PyCapsule instance
HACK_dump_helices(*args, **kwargs) Overloaded function. 1. HACK_dump_helices(pose : rosetta.core.pose.Pose, tag : str, nres : int) -> int 2. HACK_dump_helices(pose : rosetta.core.pose.Pose, tag : str, nres : int, minlen : int) -> int

HACK_dump_helix(...) method of builtins.PyCapsule instance
HACK_dump_helix(pose : rosetta.core.pose.Pose, fname : str, beg : int, end : int) -> NoneType

aa_trustworthiness(...) method of builtins.PyCapsule instance
aa_trustworthiness(aa : str) -> float

align_motif_pose(...) method of builtins.PyCapsule instance
align_motif_pose(pose : rosetta.core.pose.Pose, paln1 : rosetta.core.pose.Pose, ir : int, paln2 : rosetta.core.pose.Pose, jr : int, type : rosetta.core.scoring.motif.RPM_Type) -> float

align_motif_pose_break(...) method of builtins.PyCapsule instance
align_motif_pose_break(pose : rosetta.core.pose.Pose, paln1 : rosetta.core.pose.Pose, ir : int, paln2 : rosetta.core.pose.Pose, jr : int, type : rosetta.core.scoring.motif.RPM_Type) -> float

align_motif_pose_by_one_frame(...) method of builtins.PyCapsule instance
align_motif_pose_by_one_frame(pose : rosetta.core.pose.Pose, paln1 : rosetta.core.pose.Pose, ir : int, paln2 : rosetta.core.pose.Pose, jr : int, type : rosetta.core.scoring.motif.RPM_Type) -> float

align_motif_pose_super(...) method of builtins.PyCapsule instance
align_motif_pose_super(pose : rosetta.core.pose.Pose, paln1 : rosetta.core.pose.Pose, ir : int, paln2 : rosetta.core.pose.Pose, jr : int, type : rosetta.core.scoring.motif.RPM_Type) -> float

angle_distance(...) method of builtins.PyCapsule instance
angle_distance(a : float, b : float) -> float

filter_motifs(...) method of builtins.PyCapsule instance
filter_motifs(*args, **kwargs) Overloaded function. 1. filter_motifs(motifs_in : rosetta.core.scoring.motif.ResPairMotifs, motifs_out : rosetta.core.scoring.motif.ResPairMotifs) -> NoneType 2. filter_motifs(motifs : rosetta.core.scoring.motif.ResPairMotifs) -> NoneType

get_bins(...) method of builtins.PyCapsule instance
get_bins(c : float, a : float) -> rosetta.utility.fixedsizearray1_double_6_t

get_motif_atom_mask(...) method of builtins.PyCapsule instance
get_motif_atom_mask(*args, **kwargs) Overloaded function. 1. get_motif_atom_mask(motif_pose : rosetta.core.pose.Pose, type : rosetta.core.scoring.motif.RPM_Type) -> rosetta.core.id.AtomID_Map_bool_t 2. get_motif_atom_mask(motif_pose : rosetta.core.pose.Pose, type : rosetta.core.scoring.motif.RPM_Type, with_Hpol : bool) -> rosetta.core.id.AtomID_Map_bool_t

get_nbrs(...) method of builtins.PyCapsule instance
get_nbrs(pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_double

get_residue_pair_rt6(...) method of builtins.PyCapsule instance
get_residue_pair_rt6(*args, **kwargs) Overloaded function. 1. get_residue_pair_rt6(pose1 : rosetta.core.pose.Pose, ir : int, pose2 : rosetta.core.pose.Pose, jr : int) -> rosetta.utility.fixedsizearray1_double_6_t 2. get_residue_pair_rt6(pose1 : rosetta.core.pose.Pose, ir : int, pose2 : rosetta.core.pose.Pose, jr : int, type : rosetta.core.scoring.motif.RPM_Type) -> rosetta.utility.fixedsizearray1_double_6_t 3. get_residue_pair_rt6(pose : rosetta.core.pose.Pose, ir : int, jr : int) -> rosetta.utility.fixedsizearray1_double_6_t 4. get_residue_pair_rt6(pose : rosetta.core.pose.Pose, ir : int, jr : int, type : rosetta.core.scoring.motif.RPM_Type) -> rosetta.utility.fixedsizearray1_double_6_t

get_residue_pair_xform(...) method of builtins.PyCapsule instance
get_residue_pair_xform(*args, **kwargs) Overloaded function. 1. get_residue_pair_xform(pose1 : rosetta.core.pose.Pose, ir : int, pose2 : rosetta.core.pose.Pose, jr : int) -> rosetta.numeric.xyzTransform_double_t 2. get_residue_pair_xform(pose1 : rosetta.core.pose.Pose, ir : int, pose2 : rosetta.core.pose.Pose, jr : int, type : rosetta.core.scoring.motif.RPM_Type) -> rosetta.numeric.xyzTransform_double_t 3. get_residue_pair_xform(pose : rosetta.core.pose.Pose, ir : int, jr : int) -> rosetta.numeric.xyzTransform_double_t 4. get_residue_pair_xform(pose : rosetta.core.pose.Pose, ir : int, jr : int, type : rosetta.core.scoring.motif.RPM_Type) -> rosetta.numeric.xyzTransform_double_t

get_sasa(...) method of builtins.PyCapsule instance
get_sasa(pose : rosetta.core.pose.Pose, probesize : float) -> rosetta.utility.vector1_double

inverse_rt6(...) method of builtins.PyCapsule instance
inverse_rt6(rt : rosetta.utility.fixedsizearray1_double_6_t) -> rosetta.utility.fixedsizearray1_double_6_t

preload_motif_data(...) method of builtins.PyCapsule instance
preload_motif_data(mman : rosetta.core.scoring.motif.MotifHashManager) -> NoneType

random_rotation(...) method of builtins.PyCapsule instance
random_rotation() -> rosetta.numeric.xyzMatrix_double_t

read_motifs_binary(...) method of builtins.PyCapsule instance
read_motifs_binary(*args, **kwargs) Overloaded function. 1. read_motifs_binary(fname : str, motifs : rosetta.core.scoring.motif.ResPairMotifs) -> bool 2. read_motifs_binary(fnames : rosetta.utility.vector1_std_string, motifs : rosetta.core.scoring.motif.ResPairMotifs) -> bool

read_xfres_binary(...) method of builtins.PyCapsule instance
read_xfres_binary(*args, **kwargs) Overloaded function. 1. read_xfres_binary(fname : str, Xfres : rosetta.utility.vector1_core_scoring_motif_Xfres) -> bool 2. read_xfres_binary(fnames : rosetta.utility.vector1_std_string, Xfres : rosetta.utility.vector1_core_scoring_motif_Xfres) -> bool

rpm_type1(...) method of builtins.PyCapsule instance
rpm_type1(type : rosetta.core.scoring.motif.RPM_Type) -> rosetta.core.scoring.motif.RM_Type

rpm_type2(...) method of builtins.PyCapsule instance
rpm_type2(type : rosetta.core.scoring.motif.RPM_Type) -> rosetta.core.scoring.motif.RM_Type

set_residue_pair_xform(...) method of builtins.PyCapsule instance
set_residue_pair_xform(*args, **kwargs) Overloaded function. 1. set_residue_pair_xform(x : rosetta.numeric.xyzTransform_double_t, pose : rosetta.core.pose.Pose, ir : int, jr : int) -> NoneType 2. set_residue_pair_xform(x : rosetta.numeric.xyzTransform_double_t, pose : rosetta.core.pose.Pose, ir : int, jr : int, type : rosetta.core.scoring.motif.RPM_Type) -> NoneType

tag_from_pdb_fname(...) method of builtins.PyCapsule instance
tag_from_pdb_fname(fname0 : str) -> str

write_motifs_binary(...) method of builtins.PyCapsule instance
write_motifs_binary(fname : str, motifs : rosetta.core.scoring.motif.ResPairMotifs) -> bool

write_xfres_binary(...) method of builtins.PyCapsule instance
write_xfres_binary(fname : str, Xfres : rosetta.utility.vector1_core_scoring_motif_Xfres) -> bool

xform_pose(...) method of builtins.PyCapsule instance
xform_pose(*args, **kwargs) Overloaded function. 1. xform_pose(pose : rosetta.core.pose.Pose, s : rosetta.numeric.xyzTransform_double_t) -> NoneType 2. xform_pose(pose : rosetta.core.pose.Pose, s : rosetta.numeric.xyzTransform_double_t, sres : int) -> NoneType 3. xform_pose(pose : rosetta.core.pose.Pose, s : rosetta.numeric.xyzTransform_double_t, sres : int, eres : int) -> NoneType

Data

BB_BB = RPM_Type.BB_BB
BB_PH = RPM_Type.BB_PH
BB_PO = RPM_Type.BB_PO
MATCH_AA = MotifMatchOverlapReq.MATCH_AA
MATCH_ANY = MotifMatchOverlapReq.MATCH_ANY
MATCH_HYDROPHOBICITY = MotifMatchOverlapReq.MATCH_HYDROPHOBICITY
MATCH_ROTAMER = MotifMatchOverlapReq.MATCH_ROTAMER
NO_OVERLAP = MotifMatchOverlapReq.NO_OVERLAP
NUM_RM_TYPES = RM_Type.NUM_RM_TYPES
NUM_RPM_TYPES = RPM_Type.NUM_RPM_TYPES
PH_PO = RPM_Type.NUM_RPM_TYPES
RM_BB = RM_Type.RM_BB
RM_PH = RM_Type.RM_PH
RM_PO = RM_Type.NUM_RM_TYPES
RM_SC = RM_Type.RM_SC
RM_Type_NONE = RM_Type.RM_Type_NONE
RPM_Type_NONE = RPM_Type.RPM_Type_NONE
SC_BB = RPM_Type.SC_BB
SC_PH = RPM_Type.SC_PH
SC_PO = RPM_Type.SC_PO
SC_SC = RPM_Type.SC_SC
SMALL_OVERLAP = MotifMatchOverlapReq.SMALL_OVERLAP

Data
		BB_BB = RPM_Type.BB_BB BB_PH = RPM_Type.BB_PH BB_PO = RPM_Type.BB_PO MATCH_AA = MotifMatchOverlapReq.MATCH_AA MATCH_ANY = MotifMatchOverlapReq.MATCH_ANY MATCH_HYDROPHOBICITY = MotifMatchOverlapReq.MATCH_HYDROPHOBICITY MATCH_ROTAMER = MotifMatchOverlapReq.MATCH_ROTAMER NO_OVERLAP = MotifMatchOverlapReq.NO_OVERLAP NUM_RM_TYPES = RM_Type.NUM_RM_TYPES NUM_RPM_TYPES = RPM_Type.NUM_RPM_TYPES PH_PO = RPM_Type.NUM_RPM_TYPES RM_BB = RM_Type.RM_BB RM_PH = RM_Type.RM_PH RM_PO = RM_Type.NUM_RM_TYPES RM_SC = RM_Type.RM_SC RM_Type_NONE = RM_Type.RM_Type_NONE RPM_Type_NONE = RPM_Type.RPM_Type_NONE SC_BB = RPM_Type.SC_BB SC_PH = RPM_Type.SC_PH SC_PO = RPM_Type.SC_PO SC_SC = RPM_Type.SC_SC SMALL_OVERLAP = MotifMatchOverlapReq.SMALL_OVERLAP