Bindings for core::scoring::func namespace

Classes
		builtins.object Func AmberPeriodicFunc CharmmPeriodicFunc CircularGeneral1D_Func CircularHarmonicFunc CircularPowerFunc CircularSigmoidalFunc CircularSplineFunc ConstantFunc CountViolFunc EtableFunc FadeFunc FlatHarmonicFunc GaussianChainDoubleFunc GaussianChainFunc GaussianChainQuadrupleFunc GaussianChainSingleFunc GaussianChainTripleFunc GaussianFunc HarmonicFunc IdentityFunc KarplusFunc LinearPenaltyFunction MinMultiHarmonicFunc MixtureFunc PeriodicFunc SOGFunc ScalarWeightedFunc SigmoidFunc SkipViolFunc SoedingFunc SplineFunc SquareWell2Func SquareWellFunc SumFunc TopOutFunc USOGFunc FuncFactory SOGFunc_Impl XYZ_Func ConformationXYZ FourPointsFunc ResiduePairXYZ ResidueXYZ   class AmberPeriodicFunc(Func)     function of type y = 0.5 * k * (1 - cos(n * (x - x0) ) )     Method resolution order: AmberPeriodicFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.AmberPeriodicFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, x0_in : float, k_in : float, n_periodic_in : float) -> NoneType   2. __init__(handle, rosetta.core.scoring.func.AmberPeriodicFunc) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.AmberPeriodicFunc,  : rosetta.core.scoring.func.AmberPeriodicFunc) -> rosetta.core.scoring.func.AmberPeriodicFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.AmberPeriodicFunc) -> rosetta.core.scoring.func.Func dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.AmberPeriodicFunc, x : float) -> float func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.AmberPeriodicFunc, x : float) -> float same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.AmberPeriodicFunc, other : rosetta.core.scoring.func.Func) -> bool Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class CharmmPeriodicFunc(Func)     function of type y = 0.5 * k * (1 - cos(n * (x - x0) ) )     Method resolution order: CharmmPeriodicFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.CharmmPeriodicFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, x0_in : float, k_in : float, n_periodic_in : float) -> NoneType   2. __init__(handle, rosetta.core.scoring.func.CharmmPeriodicFunc) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.CharmmPeriodicFunc,  : rosetta.core.scoring.func.CharmmPeriodicFunc) -> rosetta.core.scoring.func.CharmmPeriodicFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.CharmmPeriodicFunc) -> rosetta.core.scoring.func.Func dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.CharmmPeriodicFunc, x : float) -> float func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.CharmmPeriodicFunc, x : float) -> float same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.CharmmPeriodicFunc, other : rosetta.core.scoring.func.Func) -> bool Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class CircularGeneral1D_Func(Func)     Function that allows return of arbitrary FArrays -- this time circularized.     Method resolution order: CircularGeneral1D_Func Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.CircularGeneral1D_Func, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, data : ObjexxFCL::FArray1D<double>, xmin : float, xbin : float) -> NoneType   2. __init__(self : handle, filename : str) -> NoneType   3. __init__(handle, rosetta.core.scoring.func.CircularGeneral1D_Func) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.CircularGeneral1D_Func,  : rosetta.core.scoring.func.CircularGeneral1D_Func) -> rosetta.core.scoring.func.CircularGeneral1D_Func clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.CircularGeneral1D_Func) -> rosetta.core.scoring.func.Func dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.CircularGeneral1D_Func, x : float) -> float func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.CircularGeneral1D_Func, x : float) -> float same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.CircularGeneral1D_Func, other : rosetta.core.scoring.func.Func) -> bool Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class CircularHarmonicFunc(Func)     Function that operates in radians, for applications like DihedralConstraint. Prevents discontinuities at 0/360 or -180/180 degrees for dihedral constraints.     Method resolution order: CircularHarmonicFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.CircularHarmonicFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, x0_radians : float, sd_radians : float) -> NoneType   2. __init__(self : handle, x0_radians : float, sd_radians : float, offset : float) -> NoneType   3. __init__(handle, rosetta.core.scoring.func.CircularHarmonicFunc) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.CircularHarmonicFunc,  : rosetta.core.scoring.func.CircularHarmonicFunc) -> rosetta.core.scoring.func.CircularHarmonicFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.CircularHarmonicFunc) -> rosetta.core.scoring.func.Func dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.CircularHarmonicFunc, x : float) -> float func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.CircularHarmonicFunc, x : float) -> float same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.CircularHarmonicFunc, other : rosetta.core.scoring.func.Func) -> bool sd(...) from builtins.PyCapsule sd(rosetta.core.scoring.func.CircularHarmonicFunc) -> float x0(...) from builtins.PyCapsule x0(rosetta.core.scoring.func.CircularHarmonicFunc) -> float Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class CircularPowerFunc(Func)     Generalization of CircularCircularPowerFunc -- other exponents allowed.     Operates in radians, like DihedralConstraint.     Method resolution order: CircularPowerFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.CircularPowerFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(self : handle, x0_radians : float, sd_radians : float, power : int, weight : float) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.CircularPowerFunc) -> rosetta.core.scoring.func.Func dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.CircularPowerFunc, x : float) -> float func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.CircularPowerFunc, x : float) -> float same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.CircularPowerFunc, other : rosetta.core.scoring.func.Func) -> bool Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.Func,  : rosetta.core.scoring.func.Func) -> rosetta.core.scoring.func.Func estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class CircularSigmoidalFunc(Func)     Function that operates in radians, for applications like DihedralConstraint. Prevents discontinuities at 0/360 or -180/180 degrees for dihedral constraints.     Method resolution order: CircularSigmoidalFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.CircularSigmoidalFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, center_radians : float, width_radians : float, slope_radians : float) -> NoneType   2. __init__(self : handle, center_radians : float, width_radians : float, slope_radians : float, offset : float) -> NoneType   3. __init__(handle, rosetta.core.scoring.func.CircularSigmoidalFunc) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.CircularSigmoidalFunc,  : rosetta.core.scoring.func.CircularSigmoidalFunc) -> rosetta.core.scoring.func.CircularSigmoidalFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.CircularSigmoidalFunc) -> rosetta.core.scoring.func.Func dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.CircularSigmoidalFunc, x : float) -> float func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.CircularSigmoidalFunc, x : float) -> float same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.CircularSigmoidalFunc, other : rosetta.core.scoring.func.Func) -> bool Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class CircularSplineFunc(Func)       Method resolution order: CircularSplineFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.CircularSplineFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, weight_in : float, energies_in : rosetta.utility.vector1_double) -> NoneType   3. __init__(handle, rosetta.core.scoring.func.CircularSplineFunc) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.CircularSplineFunc,  : rosetta.core.scoring.func.CircularSplineFunc) -> rosetta.core.scoring.func.CircularSplineFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.CircularSplineFunc) -> rosetta.core.scoring.func.Func dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.CircularSplineFunc, x : float) -> float func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.CircularSplineFunc, x : float) -> float get_weight(...) from builtins.PyCapsule get_weight(rosetta.core.scoring.func.CircularSplineFunc) -> float same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.CircularSplineFunc, other : rosetta.core.scoring.func.Func) -> bool train(...) from builtins.PyCapsule train(self : rosetta.core.scoring.func.CircularSplineFunc, energies_in : rosetta.utility.vector1_double) -> NoneType Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class ConformationXYZ(XYZ_Func)       Method resolution order: ConformationXYZ XYZ_Func builtins.object Methods defined here: __call__(...) from builtins.PyCapsule __call__(self : rosetta.core.scoring.func.ConformationXYZ, id : rosetta.core.id.AtomID) -> rosetta.numeric.xyzVector_double_t __init__(...) from builtins.PyCapsule __init__(self : handle, conformation_in : rosetta.core.conformation.Conformation) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. residue(...) from builtins.PyCapsule residue(self : rosetta.core.scoring.func.ConformationXYZ, seqpos : int) -> rosetta.core.conformation.Residue Methods inherited from XYZ_Func: assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.XYZ_Func,  : rosetta.core.scoring.func.XYZ_Func) -> rosetta.core.scoring.func.XYZ_Func   class ConstantFunc(Func)     Derived class of class Func representing a Constant distribution with a user-specified mean and standard deviation.     Method resolution order: ConstantFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.ConstantFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, return_val : float) -> NoneType   2. __init__(handle, rosetta.core.scoring.func.ConstantFunc) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.ConstantFunc) -> str assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.ConstantFunc,  : rosetta.core.scoring.func.ConstantFunc) -> rosetta.core.scoring.func.ConstantFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.ConstantFunc) -> rosetta.core.scoring.func.Func   returns a clone of this ConstantFunc dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.ConstantFunc,  : float) -> float   Returns the value of the first derivative of this ConstantFunc at distance x. func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.ConstantFunc,  : float) -> float   Returns the value of this ConstantFunc evaluated at distance x. same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.ConstantFunc, other : rosetta.core.scoring.func.Func) -> bool Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class CountViolFunc(Func)       Method resolution order: CountViolFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.CountViolFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, weight : float, myfunc : rosetta.core.scoring.func.Func) -> NoneType   2. __init__(handle, rosetta.core.scoring.func.CountViolFunc) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.CountViolFunc,  : rosetta.core.scoring.func.CountViolFunc) -> rosetta.core.scoring.func.CountViolFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.CountViolFunc) -> rosetta.core.scoring.func.Func dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.CountViolFunc, x : float) -> float func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.CountViolFunc, x : float) -> float same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.CountViolFunc, other : rosetta.core.scoring.func.Func) -> bool viols(...) from builtins.PyCapsule viols(rosetta.core.scoring.func.CountViolFunc) -> int Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class EtableFunc(Func)     Class for representing arbitrarily defined functions.     Method resolution order: EtableFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.EtableFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, min_ : float, max_ : float, stepsize_ : float) -> NoneType   2. __init__(handle, rosetta.core.scoring.func.EtableFunc) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.EtableFunc) -> str assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.EtableFunc,  : rosetta.core.scoring.func.EtableFunc) -> rosetta.core.scoring.func.EtableFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.EtableFunc) -> rosetta.core.scoring.func.Func   returns a clone of this EtableFunc dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.EtableFunc, x : float) -> float   Returns the value of the first derivative of this EtableFunc at distance x. func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.EtableFunc, x : float) -> float   Returns the value of this EtableFunc evaluated at distance x. same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.EtableFunc, other : rosetta.core.scoring.func.Func) -> bool Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class FadeFunc(Func)       Method resolution order: FadeFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.FadeFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, cutoff_lower : float, cutoff_upper : float, fade_zone : float, well_depth : float, well_offset : float) -> NoneType   2. __init__(self : handle, cutoff_lower : float, cutoff_upper : float, fade_zone : float, well_depth : float) -> NoneType   3. __init__(self : handle, cutoff_lower : float, cutoff_upper : float, fade_zone : float) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.FadeFunc,  : rosetta.core.scoring.func.FadeFunc) -> rosetta.core.scoring.func.FadeFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.FadeFunc) -> rosetta.core.scoring.func.Func cutoff_lower(...) from builtins.PyCapsule cutoff_lower(*args, **kwargs) Overloaded function.   1. cutoff_lower(rosetta.core.scoring.func.FadeFunc) -> float   2. cutoff_lower(self : rosetta.core.scoring.func.FadeFunc, x : float) -> NoneType cutoff_upper(...) from builtins.PyCapsule cutoff_upper(*args, **kwargs) Overloaded function.   1. cutoff_upper(rosetta.core.scoring.func.FadeFunc) -> float   2. cutoff_upper(self : rosetta.core.scoring.func.FadeFunc, x : float) -> NoneType dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.FadeFunc, x : float) -> float fade_zone(...) from builtins.PyCapsule fade_zone(*args, **kwargs) Overloaded function.   1. fade_zone(rosetta.core.scoring.func.FadeFunc) -> float   2. fade_zone(self : rosetta.core.scoring.func.FadeFunc, x : float) -> NoneType func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.FadeFunc, x : float) -> float same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.FadeFunc, other : rosetta.core.scoring.func.Func) -> bool Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class FlatHarmonicFunc(Func)       Method resolution order: FlatHarmonicFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.FlatHarmonicFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, x0_in : float, sd_in : float, tol_in : float) -> NoneType   2. __init__(handle, rosetta.core.scoring.func.FlatHarmonicFunc) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.FlatHarmonicFunc,  : rosetta.core.scoring.func.FlatHarmonicFunc) -> rosetta.core.scoring.func.FlatHarmonicFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.FlatHarmonicFunc) -> rosetta.core.scoring.func.Func dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.FlatHarmonicFunc, x : float) -> float func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.FlatHarmonicFunc, x : float) -> float same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.FlatHarmonicFunc, other : rosetta.core.scoring.func.Func) -> bool sd(...) from builtins.PyCapsule sd(*args, **kwargs) Overloaded function.   1. sd(rosetta.core.scoring.func.FlatHarmonicFunc) -> float   2. sd(self : rosetta.core.scoring.func.FlatHarmonicFunc, sd : float) -> NoneType tol(...) from builtins.PyCapsule tol(*args, **kwargs) Overloaded function.   1. tol(rosetta.core.scoring.func.FlatHarmonicFunc) -> float   2. tol(self : rosetta.core.scoring.func.FlatHarmonicFunc, tol : float) -> NoneType x0(...) from builtins.PyCapsule x0(*args, **kwargs) Overloaded function.   1. x0(rosetta.core.scoring.func.FlatHarmonicFunc) -> float   2. x0(self : rosetta.core.scoring.func.FlatHarmonicFunc, x : float) -> NoneType Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class FourPointsFunc(XYZ_Func)     A simple class that represents the coordinates of four points, pretending that they all belong to residue 1.  The residue() method is not implemented and cause a utility_exit.     Method resolution order: FourPointsFunc XYZ_Func builtins.object Methods defined here: __call__(...) from builtins.PyCapsule __call__(self : rosetta.core.scoring.func.FourPointsFunc, id : rosetta.core.id.AtomID) -> rosetta.numeric.xyzVector_double_t __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.FourPointsFunc,  : rosetta.core.scoring.func.FourPointsFunc) -> rosetta.core.scoring.func.FourPointsFunc residue(...) from builtins.PyCapsule residue(self : rosetta.core.scoring.func.FourPointsFunc, seqpos : int) -> rosetta.core.conformation.Residue xyz(...) from builtins.PyCapsule xyz(self : rosetta.core.scoring.func.FourPointsFunc, atomid : int, coord : rosetta.numeric.xyzVector_double_t) -> NoneType   set the coordinate for one of the four atoms   class Func(builtins.object)     Func is an abstract base class representing a function used to define constraints, in which func(r) gives the constraint score for the given value r.     Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   Equality operator.  Looks for strict equality.  Floating-point comparison is the  rule rather than the exception. __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.scoring.func.Func, rosetta.core.scoring.func.Func) -> NoneType   2. __init__(rosetta.core.scoring.func.Func) -> NoneType __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.Func,  : rosetta.core.scoring.func.Func) -> rosetta.core.scoring.func.Func clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.Func) -> rosetta.core.scoring.func.Func   This method must return a deep copy of this %Func, meaning if this %Func holds pointers  to other %Func objects, that it must clone those %Func objects as well. dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.Func,  : float) -> float   Returns a value representing the derivative of this function  evaluated at a given point. estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h). func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.Func,  : float) -> float   Returns a value representing this function evaluated at a given  point. same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   Does the input Func, "other", have the same type as me?  Necessary for the  equality operator to function correctly.  All derived Func classes must implement  this function.   class FuncFactory(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.scoring.func.FuncFactory) -> NoneType   2. __init__(self : rosetta.core.scoring.func.FuncFactory,  : rosetta.core.scoring.func.FuncFactory) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. add_type(...) from builtins.PyCapsule add_type(self : rosetta.core.scoring.func.FuncFactory, type_name : str, new_func : rosetta.core.scoring.func.Func) -> NoneType assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.FuncFactory,  : rosetta.core.scoring.func.FuncFactory) -> rosetta.core.scoring.func.FuncFactory new_func(...) from builtins.PyCapsule new_func(self : rosetta.core.scoring.func.FuncFactory, type : str) -> rosetta.core.scoring.func.Func   class GaussianChainDoubleFunc(Func)       Method resolution order: GaussianChainDoubleFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.GaussianChainDoubleFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(self : handle, gaussian_variance : float, loop_fixed_cost : float, D2 : float) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.GaussianChainDoubleFunc,  : rosetta.core.scoring.func.GaussianChainDoubleFunc) -> rosetta.core.scoring.func.GaussianChainDoubleFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.GaussianChainDoubleFunc) -> rosetta.core.scoring.func.Func dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.GaussianChainDoubleFunc, x : float) -> float func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.GaussianChainDoubleFunc, x : float) -> float same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.GaussianChainDoubleFunc, other : rosetta.core.scoring.func.Func) -> bool Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class GaussianChainFunc(Func)       Method resolution order: GaussianChainFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.GaussianChainFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, gaussian_variance : float, loop_fixed_cost : float, other_distances : rosetta.utility.vector1_double) -> NoneType   2. __init__(self : handle, gaussian_variance : float, loop_fixed_cost : float) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.GaussianChainFunc,  : rosetta.core.scoring.func.GaussianChainFunc) -> rosetta.core.scoring.func.GaussianChainFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.GaussianChainFunc) -> rosetta.core.scoring.func.Func dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.GaussianChainFunc, x : float) -> float force_combined_gaussian_approximation(...) from builtins.PyCapsule force_combined_gaussian_approximation(rosetta.core.scoring.func.GaussianChainFunc) -> bool func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.GaussianChainFunc, x : float) -> float same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.GaussianChainFunc, other : rosetta.core.scoring.func.Func) -> bool set_force_combined_gaussian_approximation(...) from builtins.PyCapsule set_force_combined_gaussian_approximation(self : rosetta.core.scoring.func.GaussianChainFunc, setting : bool) -> NoneType Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class GaussianChainQuadrupleFunc(Func)       Method resolution order: GaussianChainQuadrupleFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.GaussianChainQuadrupleFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(self : handle, gaussian_variance_ : float, loop_fixed_cost : float, D2 : float, D3 : float, D4 : float) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.GaussianChainQuadrupleFunc,  : rosetta.core.scoring.func.GaussianChainQuadrupleFunc) -> rosetta.core.scoring.func.GaussianChainQuadrupleFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.GaussianChainQuadrupleFunc) -> rosetta.core.scoring.func.Func dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.GaussianChainQuadrupleFunc, x : float) -> float func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.GaussianChainQuadrupleFunc, x : float) -> float same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.GaussianChainQuadrupleFunc, other : rosetta.core.scoring.func.Func) -> bool Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class GaussianChainSingleFunc(Func)       Method resolution order: GaussianChainSingleFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.GaussianChainSingleFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(self : handle, gaussian_variance_ : float, loop_fixed_cost : float) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.GaussianChainSingleFunc,  : rosetta.core.scoring.func.GaussianChainSingleFunc) -> rosetta.core.scoring.func.GaussianChainSingleFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.GaussianChainSingleFunc) -> rosetta.core.scoring.func.Func dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.GaussianChainSingleFunc, x : float) -> float func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.GaussianChainSingleFunc, x : float) -> float same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.GaussianChainSingleFunc, other : rosetta.core.scoring.func.Func) -> bool Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class GaussianChainTripleFunc(Func)       Method resolution order: GaussianChainTripleFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.GaussianChainTripleFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(self : handle, gaussian_variance_ : float, loop_fixed_cost : float, D2 : float, D3 : float) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.GaussianChainTripleFunc,  : rosetta.core.scoring.func.GaussianChainTripleFunc) -> rosetta.core.scoring.func.GaussianChainTripleFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.GaussianChainTripleFunc) -> rosetta.core.scoring.func.Func dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.GaussianChainTripleFunc, x : float) -> float func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.GaussianChainTripleFunc, x : float) -> float same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.GaussianChainTripleFunc, other : rosetta.core.scoring.func.Func) -> bool Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class GaussianFunc(Func)     Derived class of class Func representing a Gaussian distribution with a user-specified mean and standard deviation.     Method resolution order: GaussianFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.GaussianFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, mean : float, sd : float) -> NoneType   2. __init__(handle, rosetta.core.scoring.func.GaussianFunc) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.GaussianFunc) -> str assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.GaussianFunc,  : rosetta.core.scoring.func.GaussianFunc) -> rosetta.core.scoring.func.GaussianFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.GaussianFunc) -> rosetta.core.scoring.func.Func   returns a clone of this GaussianFunc dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.GaussianFunc, x : float) -> float   Returns the value of the first derivative of this GaussianFunc at distance x. func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.GaussianFunc, x : float) -> float   Returns the value of this GaussianFunc evaluated at distance x. same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.GaussianFunc, other : rosetta.core.scoring.func.Func) -> bool Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class HarmonicFunc(Func)       Method resolution order: HarmonicFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.HarmonicFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(self : handle, x0_in : float, sd_in : float) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.HarmonicFunc,  : rosetta.core.scoring.func.HarmonicFunc) -> rosetta.core.scoring.func.HarmonicFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.HarmonicFunc) -> rosetta.core.scoring.func.Func dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.HarmonicFunc, x : float) -> float func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.HarmonicFunc, x : float) -> float same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.HarmonicFunc, other : rosetta.core.scoring.func.Func) -> bool sd(...) from builtins.PyCapsule sd(*args, **kwargs) Overloaded function.   1. sd(rosetta.core.scoring.func.HarmonicFunc) -> float   2. sd(self : rosetta.core.scoring.func.HarmonicFunc, sd : float) -> NoneType x0(...) from builtins.PyCapsule x0(*args, **kwargs) Overloaded function.   1. x0(rosetta.core.scoring.func.HarmonicFunc) -> float   2. x0(self : rosetta.core.scoring.func.HarmonicFunc, x : float) -> NoneType Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class IdentityFunc(Func)       Method resolution order: IdentityFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.IdentityFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.core.scoring.func.IdentityFunc) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.IdentityFunc,  : rosetta.core.scoring.func.IdentityFunc) -> rosetta.core.scoring.func.IdentityFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.IdentityFunc) -> rosetta.core.scoring.func.Func dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.IdentityFunc, x : float) -> float func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.IdentityFunc, x : float) -> float same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.IdentityFunc, other : rosetta.core.scoring.func.Func) -> bool Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class KarplusFunc(Func)     Function that evaluates a J-coupling from dihedral angles in radians, for applications like DihedralConstraint. Prevents discontinuities at 0/360 or -180/180 degrees for dihedral constraints.     Method resolution order: KarplusFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.KarplusFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle, float, float, float, float, float, float) -> NoneType   doc   2. __init__(self : handle, A_Hertz : float, B_Hertz : float, C_Hertz : float, Dphi_radians : float, x0_Hertz : float, sd_Hertz : float, offset : float) -> NoneType   3. __init__(handle, rosetta.core.scoring.func.KarplusFunc) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.KarplusFunc,  : rosetta.core.scoring.func.KarplusFunc) -> rosetta.core.scoring.func.KarplusFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.KarplusFunc) -> rosetta.core.scoring.func.Func dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.KarplusFunc, x : float) -> float func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.KarplusFunc, x : float) -> float same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.KarplusFunc, other : rosetta.core.scoring.func.Func) -> bool Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class LinearPenaltyFunction(Func)       Method resolution order: LinearPenaltyFunction Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.LinearPenaltyFunction, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, x_middle : float, well_depth : float, half_width : float, slope : float) -> NoneType   2. __init__(handle, rosetta.core.scoring.func.LinearPenaltyFunction) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.LinearPenaltyFunction,  : rosetta.core.scoring.func.LinearPenaltyFunction) -> rosetta.core.scoring.func.LinearPenaltyFunction clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.LinearPenaltyFunction) -> rosetta.core.scoring.func.Func dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.LinearPenaltyFunction, x : float) -> float func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.LinearPenaltyFunction, x : float) -> float get_half_width(...) from builtins.PyCapsule get_half_width(rosetta.core.scoring.func.LinearPenaltyFunction) -> float get_slope(...) from builtins.PyCapsule get_slope(rosetta.core.scoring.func.LinearPenaltyFunction) -> float get_well_depth(...) from builtins.PyCapsule get_well_depth(rosetta.core.scoring.func.LinearPenaltyFunction) -> float get_x_middle(...) from builtins.PyCapsule get_x_middle(rosetta.core.scoring.func.LinearPenaltyFunction) -> float same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.LinearPenaltyFunction, other : rosetta.core.scoring.func.Func) -> bool set_half_width(...) from builtins.PyCapsule set_half_width(self : rosetta.core.scoring.func.LinearPenaltyFunction, half_width : float) -> NoneType set_slope(...) from builtins.PyCapsule set_slope(self : rosetta.core.scoring.func.LinearPenaltyFunction, slope : float) -> NoneType set_well_depth(...) from builtins.PyCapsule set_well_depth(self : rosetta.core.scoring.func.LinearPenaltyFunction, well_depth : float) -> NoneType set_x_middle(...) from builtins.PyCapsule set_x_middle(self : rosetta.core.scoring.func.LinearPenaltyFunction, x : float) -> NoneType Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class MinMultiHarmonicFunc(Func)       Method resolution order: MinMultiHarmonicFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.MinMultiHarmonicFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, x0_in : rosetta.utility.vector1_double, sd_in : rosetta.utility.vector1_double) -> NoneType   2. __init__(handle, rosetta.core.scoring.func.MinMultiHarmonicFunc) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.MinMultiHarmonicFunc,  : rosetta.core.scoring.func.MinMultiHarmonicFunc) -> rosetta.core.scoring.func.MinMultiHarmonicFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.MinMultiHarmonicFunc) -> rosetta.core.scoring.func.Func dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.MinMultiHarmonicFunc, x : float) -> float func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.MinMultiHarmonicFunc, x : float) -> float same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.MinMultiHarmonicFunc, other : rosetta.core.scoring.func.Func) -> bool sd(...) from builtins.PyCapsule sd(*args, **kwargs) Overloaded function.   1. sd(self : rosetta.core.scoring.func.MinMultiHarmonicFunc, n : int) -> float   2. sd(self : rosetta.core.scoring.func.MinMultiHarmonicFunc, n : int, sd : float) -> NoneType x0(...) from builtins.PyCapsule x0(*args, **kwargs) Overloaded function.   1. x0(self : rosetta.core.scoring.func.MinMultiHarmonicFunc, n : int) -> float   2. x0(self : rosetta.core.scoring.func.MinMultiHarmonicFunc, n : int, x : float) -> NoneType Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class MixtureFunc(Func)     Derived class of class Func representing a Mixture of several distinct functions. The function is of the form ln( g(r) / h(r) ), where g(r) is a mixture of a Gaussian and Exponential distributions, and h(r) is a Gaussian distribution. See methods and implementation for more information.     Method resolution order: MixtureFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.MixtureFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, anchor : float, gaussian_param : float, exp_param : float, mixture_param : float, bg_mean : float, bg_sd : float) -> NoneType   2. __init__(handle, rosetta.core.scoring.func.MixtureFunc) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.MixtureFunc) -> str assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.MixtureFunc,  : rosetta.core.scoring.func.MixtureFunc) -> rosetta.core.scoring.func.MixtureFunc calc_kl_divergence(...) from builtins.PyCapsule calc_kl_divergence(rosetta.core.scoring.func.MixtureFunc) -> float   Calculates the K-L divergence between the inferred and background distributions. clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.MixtureFunc) -> rosetta.core.scoring.func.Func   returns a clone of this MixtureFunc dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.MixtureFunc, x : float) -> float   Returns the value of the first derivative of this MixtureFunc at distance x. dfunc_component(...) from builtins.PyCapsule dfunc_component(self : rosetta.core.scoring.func.MixtureFunc, x : float, g : float, h : float, g_prime : float, h_prime : float) -> float   Function that's used for debugging. Given x, this calculates  g(x), h(x), g'(x) and h'(x). func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.MixtureFunc, x : float) -> float   Returns the value of this MixtureFunc evaluated at distance x. func_(...) from builtins.PyCapsule func_(self : rosetta.core.scoring.func.MixtureFunc, x : float) -> float   Returns the value of this MixtureFunc evaluated at distance x. same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.MixtureFunc, other : rosetta.core.scoring.func.Func) -> bool Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class PeriodicFunc(Func)     function of type y = ( k * cos(n * (x - x0) ) ) + C     Method resolution order: PeriodicFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.PeriodicFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, x0_in : float, k_in : float, n_periodic_in : float, C_in : float) -> NoneType   2. __init__(handle, rosetta.core.scoring.func.PeriodicFunc) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.PeriodicFunc,  : rosetta.core.scoring.func.PeriodicFunc) -> rosetta.core.scoring.func.PeriodicFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.PeriodicFunc) -> rosetta.core.scoring.func.Func dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.PeriodicFunc, x : float) -> float func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.PeriodicFunc, x : float) -> float same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.PeriodicFunc, other : rosetta.core.scoring.func.Func) -> bool Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class ResiduePairXYZ(XYZ_Func)       Method resolution order: ResiduePairXYZ XYZ_Func builtins.object Methods defined here: __call__(...) from builtins.PyCapsule __call__(self : rosetta.core.scoring.func.ResiduePairXYZ, id : rosetta.core.id.AtomID) -> rosetta.numeric.xyzVector_double_t __init__(...) from builtins.PyCapsule __init__(self : handle, rsd1_in : rosetta.core.conformation.Residue, rsd2_in : rosetta.core.conformation.Residue) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. residue(...) from builtins.PyCapsule residue(self : rosetta.core.scoring.func.ResiduePairXYZ, seqpos : int) -> rosetta.core.conformation.Residue Methods inherited from XYZ_Func: assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.XYZ_Func,  : rosetta.core.scoring.func.XYZ_Func) -> rosetta.core.scoring.func.XYZ_Func   class ResidueXYZ(XYZ_Func)       Method resolution order: ResidueXYZ XYZ_Func builtins.object Methods defined here: __call__(...) from builtins.PyCapsule __call__(self : rosetta.core.scoring.func.ResidueXYZ, id : rosetta.core.id.AtomID) -> rosetta.numeric.xyzVector_double_t __init__(...) from builtins.PyCapsule __init__(self : handle, rsd_in : rosetta.core.conformation.Residue) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. residue(...) from builtins.PyCapsule residue(self : rosetta.core.scoring.func.ResidueXYZ, seqpos : int) -> rosetta.core.conformation.Residue Methods inherited from XYZ_Func: assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.XYZ_Func,  : rosetta.core.scoring.func.XYZ_Func) -> rosetta.core.scoring.func.XYZ_Func   class SOGFunc(Func)     Derived class of class Func representing a SOG distribution with a user-specified mean and standard deviation.     Method resolution order: SOGFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.SOGFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, means : rosetta.utility.vector1_double, sdevs : rosetta.utility.vector1_double, weights : rosetta.utility.vector1_double) -> NoneType   3. __init__(self : handle, mean : float, sdev : float) -> NoneType   4. __init__(handle, rosetta.core.scoring.func.SOGFunc) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.SOGFunc) -> str assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.SOGFunc,  : rosetta.core.scoring.func.SOGFunc) -> rosetta.core.scoring.func.SOGFunc check_bounds(...) from builtins.PyCapsule check_bounds(self : rosetta.core.scoring.func.SOGFunc, x : float, val : float) -> NoneType clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.SOGFunc) -> rosetta.core.scoring.func.Func   returns a clone of this SOGFunc dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.SOGFunc, x : float) -> float   Returns the value of the first derivative of this SOGFunc at distance x. func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.SOGFunc, x : float) -> float   Returns the value of this SOGFunc evaluated at distance x. same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.SOGFunc, other : rosetta.core.scoring.func.Func) -> bool Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class SOGFunc_Impl(builtins.object)     Derived class of class Func representing a SOG distribution with a user-specified mean and standard deviation.     Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.SOGFunc_Impl, other : rosetta.core.scoring.func.SOGFunc_Impl) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : rosetta.core.scoring.func.SOGFunc_Impl, means : rosetta.utility.vector1_double, sdevs : rosetta.utility.vector1_double, weights : rosetta.utility.vector1_double) -> NoneType   2. __init__(rosetta.core.scoring.func.SOGFunc_Impl) -> NoneType   3. __init__(self : rosetta.core.scoring.func.SOGFunc_Impl,  : rosetta.core.scoring.func.SOGFunc_Impl) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.SOGFunc_Impl,  : rosetta.core.scoring.func.SOGFunc_Impl) -> rosetta.core.scoring.func.SOGFunc_Impl check_bounds(...) from builtins.PyCapsule check_bounds(self : rosetta.core.scoring.func.SOGFunc_Impl, x : float, val : float) -> NoneType clear_(...) from builtins.PyCapsule clear_(rosetta.core.scoring.func.SOGFunc_Impl) -> NoneType dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.SOGFunc_Impl, x : float) -> float   Returns the value of the first derivative of this SOGFunc_Impl at distance x. func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.SOGFunc_Impl, x : float) -> float   Returns the value of this SOGFunc_Impl evaluated at distance x. get_alt_score_(...) from builtins.PyCapsule get_alt_score_(self : rosetta.core.scoring.func.SOGFunc_Impl, x : float) -> float prob_sum_of_gaussians(...) from builtins.PyCapsule prob_sum_of_gaussians(self : rosetta.core.scoring.func.SOGFunc_Impl, x : float) -> float renormalize_weights(...) from builtins.PyCapsule renormalize_weights(rosetta.core.scoring.func.SOGFunc_Impl) -> NoneType set_defaults(...) from builtins.PyCapsule set_defaults(rosetta.core.scoring.func.SOGFunc_Impl) -> NoneType smooth_to_zero(...) from builtins.PyCapsule smooth_to_zero(*args, **kwargs) Overloaded function.   1. smooth_to_zero(self : rosetta.core.scoring.func.SOGFunc_Impl, setting : bool) -> NoneType   2. smooth_to_zero(rosetta.core.scoring.func.SOGFunc_Impl) -> bool sog_cst_param(...) from builtins.PyCapsule sog_cst_param(*args, **kwargs) Overloaded function.   1. sog_cst_param(rosetta.core.scoring.func.SOGFunc_Impl) -> float   2. sog_cst_param(self : rosetta.core.scoring.func.SOGFunc_Impl, param : float) -> NoneType upper_bound(...) from builtins.PyCapsule upper_bound(*args, **kwargs) Overloaded function.   1. upper_bound(self : rosetta.core.scoring.func.SOGFunc_Impl, r : float) -> NoneType   2. upper_bound(rosetta.core.scoring.func.SOGFunc_Impl) -> float upper_bound_score(...) from builtins.PyCapsule upper_bound_score(rosetta.core.scoring.func.SOGFunc_Impl) -> float   class ScalarWeightedFunc(Func)       Method resolution order: ScalarWeightedFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.ScalarWeightedFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, weight : float, myfunc : rosetta.core.scoring.func.Func) -> NoneType   2. __init__(handle, rosetta.core.scoring.func.ScalarWeightedFunc) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.ScalarWeightedFunc,  : rosetta.core.scoring.func.ScalarWeightedFunc) -> rosetta.core.scoring.func.ScalarWeightedFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.ScalarWeightedFunc) -> rosetta.core.scoring.func.Func dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.ScalarWeightedFunc, x : float) -> float func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.ScalarWeightedFunc, x : float) -> float same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.ScalarWeightedFunc, other : rosetta.core.scoring.func.Func) -> bool Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class SigmoidFunc(Func)       Method resolution order: SigmoidFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.SigmoidFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, x0_in : float, slope_in : float) -> NoneType   2. __init__(handle, rosetta.core.scoring.func.SigmoidFunc) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.SigmoidFunc,  : rosetta.core.scoring.func.SigmoidFunc) -> rosetta.core.scoring.func.SigmoidFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.SigmoidFunc) -> rosetta.core.scoring.func.Func dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.SigmoidFunc, x : float) -> float func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.SigmoidFunc, x : float) -> float same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.SigmoidFunc, other : rosetta.core.scoring.func.Func) -> bool slope(...) from builtins.PyCapsule slope(*args, **kwargs) Overloaded function.   1. slope(rosetta.core.scoring.func.SigmoidFunc) -> float   2. slope(self : rosetta.core.scoring.func.SigmoidFunc, slope : float) -> NoneType x0(...) from builtins.PyCapsule x0(*args, **kwargs) Overloaded function.   1. x0(rosetta.core.scoring.func.SigmoidFunc) -> float   2. x0(self : rosetta.core.scoring.func.SigmoidFunc, x : float) -> NoneType Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class SkipViolFunc(Func)       Method resolution order: SkipViolFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.SkipViolFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, weight : float, myfunc : rosetta.core.scoring.func.Func) -> NoneType   2. __init__(handle, rosetta.core.scoring.func.SkipViolFunc) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.SkipViolFunc,  : rosetta.core.scoring.func.SkipViolFunc) -> rosetta.core.scoring.func.SkipViolFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.SkipViolFunc) -> rosetta.core.scoring.func.Func dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.SkipViolFunc, x : float) -> float func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.SkipViolFunc, x : float) -> float same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.SkipViolFunc, other : rosetta.core.scoring.func.Func) -> bool viols(...) from builtins.PyCapsule viols(rosetta.core.scoring.func.SkipViolFunc) -> int Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class SoedingFunc(Func)     Derived class of class Func representing a Soeding distribution with a user-specified mean and standard deviation.     Method resolution order: SoedingFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.SoedingFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.core.scoring.func.SoedingFunc) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.SoedingFunc) -> str assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.SoedingFunc,  : rosetta.core.scoring.func.SoedingFunc) -> rosetta.core.scoring.func.SoedingFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.SoedingFunc) -> rosetta.core.scoring.func.Func   returns a clone of this SoedingFunc compute_func(...) from builtins.PyCapsule compute_func(self : rosetta.core.scoring.func.SoedingFunc, x : float) -> float dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.SoedingFunc, x : float) -> float   Returns the value of the first derivative of this SoedingFunc at distance x. func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.SoedingFunc, x : float) -> float   Returns the value of this SoedingFunc evaluated at distance x. same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.SoedingFunc, other : rosetta.core.scoring.func.Func) -> bool Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class SplineFunc(Func)       Method resolution order: SplineFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.SplineFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.core.scoring.func.SplineFunc) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.SplineFunc,  : rosetta.core.scoring.func.SplineFunc) -> rosetta.core.scoring.func.SplineFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.SplineFunc) -> rosetta.core.scoring.func.Func   returns a clone of this SplineFunc dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.SplineFunc, x : float) -> float   Returns the value of the first derivative of this SplineFunc at distance x. func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.SplineFunc, x : float) -> float   Returns the value of this SplineFunc evaluated at distance x. get_KB_description(...) from builtins.PyCapsule get_KB_description(rosetta.core.scoring.func.SplineFunc) -> str get_bin_size(...) from builtins.PyCapsule get_bin_size(rosetta.core.scoring.func.SplineFunc) -> float get_exp_val(...) from builtins.PyCapsule get_exp_val(rosetta.core.scoring.func.SplineFunc) -> float   return SplineFunc member variables get_filename(...) from builtins.PyCapsule get_filename(rosetta.core.scoring.func.SplineFunc) -> str get_lower_bound_dy(...) from builtins.PyCapsule get_lower_bound_dy(rosetta.core.scoring.func.SplineFunc) -> float get_lower_bound_x(...) from builtins.PyCapsule get_lower_bound_x(rosetta.core.scoring.func.SplineFunc) -> float get_lower_bound_y(...) from builtins.PyCapsule get_lower_bound_y(rosetta.core.scoring.func.SplineFunc) -> float get_upper_bound_dy(...) from builtins.PyCapsule get_upper_bound_dy(rosetta.core.scoring.func.SplineFunc) -> float get_upper_bound_x(...) from builtins.PyCapsule get_upper_bound_x(rosetta.core.scoring.func.SplineFunc) -> float get_upper_bound_y(...) from builtins.PyCapsule get_upper_bound_y(rosetta.core.scoring.func.SplineFunc) -> float get_weight(...) from builtins.PyCapsule get_weight(rosetta.core.scoring.func.SplineFunc) -> float same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.SplineFunc, other : rosetta.core.scoring.func.Func) -> bool Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class SquareWell2Func(Func)       Method resolution order: SquareWell2Func Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.SquareWell2Func, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, x0_in : float, x_range_in : float, well_depth_in : float) -> NoneType   2. __init__(handle, rosetta.core.scoring.func.SquareWell2Func) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.SquareWell2Func,  : rosetta.core.scoring.func.SquareWell2Func) -> rosetta.core.scoring.func.SquareWell2Func clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.SquareWell2Func) -> rosetta.core.scoring.func.Func dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.SquareWell2Func, x : float) -> float func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.SquareWell2Func, x : float) -> float same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.SquareWell2Func, other : rosetta.core.scoring.func.Func) -> bool well_depth(...) from builtins.PyCapsule well_depth(*args, **kwargs) Overloaded function.   1. well_depth(rosetta.core.scoring.func.SquareWell2Func) -> float   2. well_depth(self : rosetta.core.scoring.func.SquareWell2Func, well_depth : float) -> NoneType x0(...) from builtins.PyCapsule x0(*args, **kwargs) Overloaded function.   1. x0(rosetta.core.scoring.func.SquareWell2Func) -> float   2. x0(self : rosetta.core.scoring.func.SquareWell2Func, x : float) -> NoneType x_range(...) from builtins.PyCapsule x_range(*args, **kwargs) Overloaded function.   1. x_range(rosetta.core.scoring.func.SquareWell2Func) -> float   2. x_range(self : rosetta.core.scoring.func.SquareWell2Func, x_range : float) -> NoneType Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class SquareWellFunc(Func)       Method resolution order: SquareWellFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.SquareWellFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, x0_in : float, well_depth_in : float) -> NoneType   2. __init__(handle, rosetta.core.scoring.func.SquareWellFunc) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.SquareWellFunc,  : rosetta.core.scoring.func.SquareWellFunc) -> rosetta.core.scoring.func.SquareWellFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.SquareWellFunc) -> rosetta.core.scoring.func.Func dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.SquareWellFunc, x : float) -> float func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.SquareWellFunc, x : float) -> float same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.SquareWellFunc, other : rosetta.core.scoring.func.Func) -> bool well_depth(...) from builtins.PyCapsule well_depth(*args, **kwargs) Overloaded function.   1. well_depth(rosetta.core.scoring.func.SquareWellFunc) -> float   2. well_depth(self : rosetta.core.scoring.func.SquareWellFunc, well_depth : float) -> NoneType x0(...) from builtins.PyCapsule x0(*args, **kwargs) Overloaded function.   1. x0(rosetta.core.scoring.func.SquareWellFunc) -> float   2. x0(self : rosetta.core.scoring.func.SquareWellFunc, x : float) -> NoneType Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class SumFunc(Func)       Method resolution order: SumFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.SumFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.core.scoring.func.SumFunc) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. add_func(...) from builtins.PyCapsule add_func(self : rosetta.core.scoring.func.SumFunc, f : rosetta.core.scoring.func.Func) -> NoneType assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.SumFunc,  : rosetta.core.scoring.func.SumFunc) -> rosetta.core.scoring.func.SumFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.SumFunc) -> rosetta.core.scoring.func.Func dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.SumFunc, x : float) -> float func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.SumFunc, x : float) -> float funcs(...) from builtins.PyCapsule funcs(*args, **kwargs) Overloaded function.   1. funcs(rosetta.core.scoring.func.SumFunc) -> rosetta.utility.vector1_std_shared_ptr_core_scoring_func_Func_t   2. funcs(self : rosetta.core.scoring.func.SumFunc, funcs : rosetta.utility.vector1_std_shared_ptr_core_scoring_func_Func_t) -> NoneType same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.SumFunc, other : rosetta.core.scoring.func.Func) -> bool Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class TopOutFunc(Func)       Method resolution order: TopOutFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.TopOutFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(self : handle, weight_in : float, x0_in : float, limit_in : float) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.TopOutFunc,  : rosetta.core.scoring.func.TopOutFunc) -> rosetta.core.scoring.func.TopOutFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.TopOutFunc) -> rosetta.core.scoring.func.Func dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.TopOutFunc, x : float) -> float func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.TopOutFunc, x : float) -> float limit(...) from builtins.PyCapsule limit(*args, **kwargs) Overloaded function.   1. limit(rosetta.core.scoring.func.TopOutFunc) -> float   2. limit(self : rosetta.core.scoring.func.TopOutFunc, limit : float) -> NoneType same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.TopOutFunc, other : rosetta.core.scoring.func.Func) -> bool weight(...) from builtins.PyCapsule weight(*args, **kwargs) Overloaded function.   1. weight(rosetta.core.scoring.func.TopOutFunc) -> float   2. weight(self : rosetta.core.scoring.func.TopOutFunc, weight : float) -> NoneType x0(...) from builtins.PyCapsule x0(*args, **kwargs) Overloaded function.   1. x0(rosetta.core.scoring.func.TopOutFunc) -> float   2. x0(self : rosetta.core.scoring.func.TopOutFunc, x : float) -> NoneType Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class USOGFunc(Func)     Unnormalized, unbounded sum of Gaussians constraint     Method resolution order: USOGFunc Func builtins.object Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(self : rosetta.core.scoring.func.USOGFunc, other : rosetta.core.scoring.func.Func) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, float, float) -> NoneType   doc   3. __init__(self : handle, mean : float, std_dev : float, weight : float) -> NoneType   4. __init__(self : handle, means : rosetta.utility.vector1_double, std_devs : rosetta.utility.vector1_double, weights : rosetta.utility.vector1_double) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.USOGFunc,  : rosetta.core.scoring.func.USOGFunc) -> rosetta.core.scoring.func.USOGFunc clone(...) from builtins.PyCapsule clone(rosetta.core.scoring.func.USOGFunc) -> rosetta.core.scoring.func.Func dfunc(...) from builtins.PyCapsule dfunc(self : rosetta.core.scoring.func.USOGFunc, x : float) -> float   Returns a value representing the derivative of this function evaluated at a given point func(...) from builtins.PyCapsule func(self : rosetta.core.scoring.func.USOGFunc, x : float) -> float   Returns a value representing this function evaluated at a given point numGaussians(...) from builtins.PyCapsule numGaussians(rosetta.core.scoring.func.USOGFunc) -> int   Returns the number of Gaussian components same_type_as_me(...) from builtins.PyCapsule same_type_as_me(self : rosetta.core.scoring.func.USOGFunc, other : rosetta.core.scoring.func.Func) -> bool Methods inherited from Func: __ne__(...) from builtins.PyCapsule __ne__(self : rosetta.core.scoring.func.Func, other : rosetta.core.scoring.func.Func) -> bool   inequality operator -- simply the negation of the (virtual) equality operator __str__(...) from builtins.PyCapsule __str__(rosetta.core.scoring.func.Func) -> str estimate_dfunc(...) from builtins.PyCapsule estimate_dfunc(*args, **kwargs) Overloaded function.   1. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+1e-05).   2. estimate_dfunc(self : rosetta.core.scoring.func.Func, r : float, h : float) -> float   Estimates the derivative of this function at a given radius by  calculating the slope of the secant line from func(r) and func(r+h).   class XYZ_Func(builtins.object)     just a simple class that takes an AtomID and returns a Vector (position)     Methods defined here: __call__(...) from builtins.PyCapsule __call__(self : rosetta.core.scoring.func.XYZ_Func, id : rosetta.core.id.AtomID) -> rosetta.numeric.xyzVector_double_t __init__(...) from builtins.PyCapsule __init__(rosetta.core.scoring.func.XYZ_Func) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.scoring.func.XYZ_Func,  : rosetta.core.scoring.func.XYZ_Func) -> rosetta.core.scoring.func.XYZ_Func residue(...) from builtins.PyCapsule residue(self : rosetta.core.scoring.func.XYZ_Func, seqpos : int) -> rosetta.core.conformation.Residue