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- builtins.object
-
- Dssp
- Pairing
- StrandPairing
- StrandPairingSet
class Dssp(builtins.object) |
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Non-protein residues get a DSSP value of ' '
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Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(self : rosetta.core.scoring.dssp.Dssp, : rosetta.core.pose.Pose) -> NoneType
2. __init__(self : rosetta.core.scoring.dssp.Dssp, : rosetta.core.scoring.dssp.Dssp) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.scoring.dssp.Dssp, : rosetta.core.scoring.dssp.Dssp) -> rosetta.core.scoring.dssp.Dssp
- bb_pair_score(...) from builtins.PyCapsule
- bb_pair_score(self : rosetta.core.scoring.dssp.Dssp, res1 : int, res2 : int) -> float
- dssp(...) from builtins.PyCapsule
- dssp(self : rosetta.core.scoring.dssp.Dssp, dssp_secstruct : ObjexxFCL::FArray1<char>) -> NoneType
- dssp_featurizer(...) from builtins.PyCapsule
- dssp_featurizer(self : rosetta.core.scoring.dssp.Dssp, secstruct : ObjexxFCL::FArray1<char>) -> NoneType
- dssp_reduced(...) from builtins.PyCapsule
- dssp_reduced(*args, **kwargs)
Overloaded function.
1. dssp_reduced(self : rosetta.core.scoring.dssp.Dssp, secstruct : ObjexxFCL::FArray1<char>) -> NoneType
2. dssp_reduced(rosetta.core.scoring.dssp.Dssp) -> NoneType
- dssp_reduced_IG_as_L(...) from builtins.PyCapsule
- dssp_reduced_IG_as_L(self : rosetta.core.scoring.dssp.Dssp, secstruct : ObjexxFCL::FArray1<char>) -> NoneType
- dssp_reduced_IG_as_L_if_adjcent_H(...) from builtins.PyCapsule
- dssp_reduced_IG_as_L_if_adjcent_H(self : rosetta.core.scoring.dssp.Dssp, secstruct : ObjexxFCL::FArray1<char>) -> NoneType
- get_dssp_reduced_IG_as_L_secstruct(...) from builtins.PyCapsule
- get_dssp_reduced_IG_as_L_secstruct(rosetta.core.scoring.dssp.Dssp) -> str
- get_dssp_secstruct(...) from builtins.PyCapsule
- get_dssp_secstruct(*args, **kwargs)
Overloaded function.
1. get_dssp_secstruct(self : rosetta.core.scoring.dssp.Dssp, resid : int) -> str
2. get_dssp_secstruct(rosetta.core.scoring.dssp.Dssp) -> str
- in_paired_strands(...) from builtins.PyCapsule
- in_paired_strands(self : rosetta.core.scoring.dssp.Dssp, res1 : int, res2 : int) -> bool
- insert_dssp_ss_into_pose(...) from builtins.PyCapsule
- insert_dssp_ss_into_pose(*args, **kwargs)
Overloaded function.
1. insert_dssp_ss_into_pose(self : rosetta.core.scoring.dssp.Dssp, pose : rosetta.core.pose.Pose) -> NoneType
2. insert_dssp_ss_into_pose(self : rosetta.core.scoring.dssp.Dssp, pose : rosetta.core.pose.Pose, recompute : bool) -> NoneType
- insert_edge_ss_into_pose(...) from builtins.PyCapsule
- insert_edge_ss_into_pose(*args, **kwargs)
Overloaded function.
1. insert_edge_ss_into_pose(self : rosetta.core.scoring.dssp.Dssp, pose : rosetta.core.pose.Pose) -> NoneType
2. insert_edge_ss_into_pose(self : rosetta.core.scoring.dssp.Dssp, pose : rosetta.core.pose.Pose, recompute : bool) -> NoneType
- insert_ss_into_pose(...) from builtins.PyCapsule
- insert_ss_into_pose(*args, **kwargs)
Overloaded function.
1. insert_ss_into_pose(self : rosetta.core.scoring.dssp.Dssp, pose : rosetta.core.pose.Pose) -> NoneType
2. insert_ss_into_pose(self : rosetta.core.scoring.dssp.Dssp, pose : rosetta.core.pose.Pose, recompute : bool) -> NoneType
- insert_ss_into_pose_no_IG_helix(...) from builtins.PyCapsule
- insert_ss_into_pose_no_IG_helix(*args, **kwargs)
Overloaded function.
1. insert_ss_into_pose_no_IG_helix(self : rosetta.core.scoring.dssp.Dssp, pose : rosetta.core.pose.Pose) -> NoneType
2. insert_ss_into_pose_no_IG_helix(self : rosetta.core.scoring.dssp.Dssp, pose : rosetta.core.pose.Pose, recompute : bool) -> NoneType
- num_pairings(...) from builtins.PyCapsule
- num_pairings(self : rosetta.core.scoring.dssp.Dssp, resi : int) -> int
- paired(...) from builtins.PyCapsule
- paired(self : rosetta.core.scoring.dssp.Dssp, res1 : int, res2 : int, antiparallel : bool) -> bool
- strand_pairing_set(...) from builtins.PyCapsule
- strand_pairing_set(rosetta.core.scoring.dssp.Dssp) -> core::scoring::dssp::StrandPairingSet
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class Pairing(builtins.object) |
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Methods defined here:
- Orientation(...) from builtins.PyCapsule
- Orientation(*args, **kwargs)
Overloaded function.
1. Orientation(rosetta.core.scoring.dssp.Pairing) -> int
2. Orientation(self : rosetta.core.scoring.dssp.Pairing, orientation : int) -> NoneType
- Pleating(...) from builtins.PyCapsule
- Pleating(*args, **kwargs)
Overloaded function.
1. Pleating(rosetta.core.scoring.dssp.Pairing) -> int
2. Pleating(self : rosetta.core.scoring.dssp.Pairing, pleating : int) -> NoneType
- Pos1(...) from builtins.PyCapsule
- Pos1(*args, **kwargs)
Overloaded function.
1. Pos1(rosetta.core.scoring.dssp.Pairing) -> int
2. Pos1(self : rosetta.core.scoring.dssp.Pairing, pos1 : int) -> NoneType
- Pos2(...) from builtins.PyCapsule
- Pos2(*args, **kwargs)
Overloaded function.
1. Pos2(rosetta.core.scoring.dssp.Pairing) -> int
2. Pos2(self : rosetta.core.scoring.dssp.Pairing, pos2 : int) -> NoneType
- __eq__(...) from builtins.PyCapsule
- __eq__(self : rosetta.core.scoring.dssp.Pairing, p : rosetta.core.scoring.dssp.Pairing) -> bool
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(rosetta.core.scoring.dssp.Pairing) -> NoneType
2. __init__(self : rosetta.core.scoring.dssp.Pairing, pos1_in : int, pos2_in : int) -> NoneType
3. __init__(self : rosetta.core.scoring.dssp.Pairing, : ObjexxFCL::FArray1A<int>) -> NoneType
4. __init__(self : rosetta.core.scoring.dssp.Pairing, pos1_in : int, pos2_in : int, ori_in : int, pleat_in : int) -> NoneType
5. __init__(self : rosetta.core.scoring.dssp.Pairing, : rosetta.core.scoring.dssp.Pairing) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- __str__(...) from builtins.PyCapsule
- __str__(rosetta.core.scoring.dssp.Pairing) -> str
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.scoring.dssp.Pairing, : rosetta.core.scoring.dssp.Pairing) -> rosetta.core.scoring.dssp.Pairing
- generate_reversed(...) from builtins.PyCapsule
- generate_reversed(rosetta.core.scoring.dssp.Pairing) -> rosetta.core.scoring.dssp.Pairing
returns a new reversed pairing
- get_register(...) from builtins.PyCapsule
- get_register(rosetta.core.scoring.dssp.Pairing) -> int
- is_anti(...) from builtins.PyCapsule
- is_anti(rosetta.core.scoring.dssp.Pairing) -> bool
- is_inwards(...) from builtins.PyCapsule
- is_inwards(rosetta.core.scoring.dssp.Pairing) -> bool
- is_outwards(...) from builtins.PyCapsule
- is_outwards(rosetta.core.scoring.dssp.Pairing) -> bool
- is_parallel(...) from builtins.PyCapsule
- is_parallel(rosetta.core.scoring.dssp.Pairing) -> bool
- reverse(...) from builtins.PyCapsule
- reverse(rosetta.core.scoring.dssp.Pairing) -> rosetta.core.scoring.dssp.Pairing
reverses the Pairing
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class StrandPairing(builtins.object) |
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///////////////////////////////////////////////////////////////
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Methods defined here:
- __eq__(...) from builtins.PyCapsule
- __eq__(self : rosetta.core.scoring.dssp.StrandPairing, rhs : rosetta.core.scoring.dssp.StrandPairing) -> int
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(rosetta.core.scoring.dssp.StrandPairing) -> NoneType
2. __init__(self : rosetta.core.scoring.dssp.StrandPairing, res1 : int, res2 : int, antiparallel : bool, pleating : int) -> NoneType
3. __init__(self : rosetta.core.scoring.dssp.StrandPairing, : rosetta.core.scoring.dssp.StrandPairing) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- __str__(...) from builtins.PyCapsule
- __str__(rosetta.core.scoring.dssp.StrandPairing) -> str
- antiparallel(...) from builtins.PyCapsule
- antiparallel(rosetta.core.scoring.dssp.StrandPairing) -> bool
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.scoring.dssp.StrandPairing, : rosetta.core.scoring.dssp.StrandPairing) -> rosetta.core.scoring.dssp.StrandPairing
- begin1(...) from builtins.PyCapsule
- begin1(rosetta.core.scoring.dssp.StrandPairing) -> int
- check_pleat(...) from builtins.PyCapsule
- check_pleat(rosetta.core.scoring.dssp.StrandPairing) -> bool
- contact_order(...) from builtins.PyCapsule
- contact_order(rosetta.core.scoring.dssp.StrandPairing) -> int
- contains(...) from builtins.PyCapsule
- contains(self : rosetta.core.scoring.dssp.StrandPairing, res : int) -> bool
- end1(...) from builtins.PyCapsule
- end1(rosetta.core.scoring.dssp.StrandPairing) -> int
- extend(...) from builtins.PyCapsule
- extend(self : rosetta.core.scoring.dssp.StrandPairing, res : int, res2 : int, antiparallel : bool, pleating : int) -> bool
- extend_to(...) from builtins.PyCapsule
- extend_to(self : rosetta.core.scoring.dssp.StrandPairing, res : int) -> NoneType
- get_all_register_and_bulges(...) from builtins.PyCapsule
- get_all_register_and_bulges(self : rosetta.core.scoring.dssp.StrandPairing, regs : rosetta.utility.vector1_unsigned_long, bulges : rosetta.utility.vector1_unsigned_long) -> NoneType
- get_beta_pairs(...) from builtins.PyCapsule
- get_beta_pairs(self : rosetta.core.scoring.dssp.StrandPairing, : rosetta.utility.vector1_core_scoring_dssp_Pairing) -> NoneType
- get_pair(...) from builtins.PyCapsule
- get_pair(self : rosetta.core.scoring.dssp.StrandPairing, res : int) -> int
- get_pleating(...) from builtins.PyCapsule
- get_pleating(self : rosetta.core.scoring.dssp.StrandPairing, res : int) -> int
- get_register(...) from builtins.PyCapsule
- get_register(rosetta.core.scoring.dssp.StrandPairing) -> int
- has_common_pairing(...) from builtins.PyCapsule
- has_common_pairing(self : rosetta.core.scoring.dssp.StrandPairing, other : rosetta.core.scoring.dssp.StrandPairing) -> bool
- has_pairing(...) from builtins.PyCapsule
- has_pairing(self : rosetta.core.scoring.dssp.StrandPairing, : rosetta.core.scoring.dssp.Pairing) -> bool
- hash_value(...) from builtins.PyCapsule
- hash_value(rosetta.core.scoring.dssp.StrandPairing) -> int
- is_bulge(...) from builtins.PyCapsule
- is_bulge(self : rosetta.core.scoring.dssp.StrandPairing, res : int) -> bool
- is_ladder(...) from builtins.PyCapsule
- is_ladder(rosetta.core.scoring.dssp.StrandPairing) -> bool
- merge(...) from builtins.PyCapsule
- merge(*args, **kwargs)
Overloaded function.
1. merge(self : rosetta.core.scoring.dssp.StrandPairing, other : rosetta.core.scoring.dssp.StrandPairing) -> bool
2. merge(self : rosetta.core.scoring.dssp.StrandPairing, other : rosetta.core.scoring.dssp.StrandPairing, domerge : bool) -> bool
- mergeable(...) from builtins.PyCapsule
- mergeable(self : rosetta.core.scoring.dssp.StrandPairing, other : rosetta.core.scoring.dssp.StrandPairing) -> bool
- paired(...) from builtins.PyCapsule
- paired(self : rosetta.core.scoring.dssp.StrandPairing, res1 : int, res2 : int, anti : bool) -> bool
- range_check(...) from builtins.PyCapsule
- range_check(rosetta.core.scoring.dssp.StrandPairing) -> bool
- size(...) from builtins.PyCapsule
- size(rosetta.core.scoring.dssp.StrandPairing) -> int
- valid_ends(...) from builtins.PyCapsule
- valid_ends(rosetta.core.scoring.dssp.StrandPairing) -> bool
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class StrandPairingSet(builtins.object) |
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///////////////////////////////////////////////////////////////
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Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(rosetta.core.scoring.dssp.StrandPairingSet) -> NoneType
2. __init__(self : rosetta.core.scoring.dssp.StrandPairingSet, hbonds : rosetta.ObjexxFCL.FArray2_float_t, threshold : float, : rosetta.core.pose.Pose) -> NoneType
3. __init__(rosetta.core.scoring.dssp.StrandPairingSet, rosetta.core.pose.Pose) -> NoneType
doc
4. __init__(self : rosetta.core.scoring.dssp.StrandPairingSet, : rosetta.core.pose.Pose, threshold : float) -> NoneType
5. __init__(self : rosetta.core.scoring.dssp.StrandPairingSet, : rosetta.utility.vector1_core_scoring_dssp_Pairing) -> NoneType
6. __init__(self : rosetta.core.scoring.dssp.StrandPairingSet, : rosetta.core.scoring.dssp.StrandPairingSet) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- __str__(...) from builtins.PyCapsule
- __str__(rosetta.core.scoring.dssp.StrandPairingSet) -> str
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.scoring.dssp.StrandPairingSet, : rosetta.core.scoring.dssp.StrandPairingSet) -> rosetta.core.scoring.dssp.StrandPairingSet
- begin(...) from builtins.PyCapsule
- begin(rosetta.core.scoring.dssp.StrandPairingSet) -> __gnu_cxx::__normal_iterator<core::scoring::dssp::StrandPairing const*, std::vector<core::scoring::dssp::StrandPairing, std::allocator<core::scoring::dssp::StrandPairing> > >
- check_pleat(...) from builtins.PyCapsule
- check_pleat(rosetta.core.scoring.dssp.StrandPairingSet) -> bool
- dssp_state(...) from builtins.PyCapsule
- dssp_state(self : rosetta.core.scoring.dssp.StrandPairingSet, res : int) -> str
- end(...) from builtins.PyCapsule
- end(rosetta.core.scoring.dssp.StrandPairingSet) -> __gnu_cxx::__normal_iterator<core::scoring::dssp::StrandPairing const*, std::vector<core::scoring::dssp::StrandPairing, std::allocator<core::scoring::dssp::StrandPairing> > >
- featurizer_state(...) from builtins.PyCapsule
- featurizer_state(self : rosetta.core.scoring.dssp.StrandPairingSet, res : int) -> str
- get_beta_pairs(...) from builtins.PyCapsule
- get_beta_pairs(self : rosetta.core.scoring.dssp.StrandPairingSet, : rosetta.utility.vector1_core_scoring_dssp_Pairing) -> NoneType
- has_pairing(...) from builtins.PyCapsule
- has_pairing(*args, **kwargs)
Overloaded function.
1. has_pairing(self : rosetta.core.scoring.dssp.StrandPairingSet, : rosetta.core.scoring.dssp.Pairing) -> bool
2. has_pairing(self : rosetta.core.scoring.dssp.StrandPairingSet, : rosetta.core.scoring.dssp.StrandPairing) -> bool
- merge(...) from builtins.PyCapsule
- merge(*args, **kwargs)
Overloaded function.
1. merge(self : rosetta.core.scoring.dssp.StrandPairingSet, other : rosetta.core.scoring.dssp.StrandPairingSet) -> bool
2. merge(self : rosetta.core.scoring.dssp.StrandPairingSet, other : rosetta.core.scoring.dssp.StrandPairingSet, domerge : bool) -> bool
- paired(...) from builtins.PyCapsule
- paired(self : rosetta.core.scoring.dssp.StrandPairingSet, res1 : int, res2 : int, antiparallel : bool) -> bool
- push_back(...) from builtins.PyCapsule
- push_back(self : rosetta.core.scoring.dssp.StrandPairingSet, sp : rosetta.core.scoring.dssp.StrandPairing) -> NoneType
- size(...) from builtins.PyCapsule
- size(rosetta.core.scoring.dssp.StrandPairingSet) -> int
- strand_pairing(...) from builtins.PyCapsule
- strand_pairing(self : rosetta.core.scoring.dssp.StrandPairingSet, i : int) -> rosetta.core.scoring.dssp.StrandPairing
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