| |
- builtins.object
-
- Atom_Bin
- BasePair
- BaseStack
- RNA_IdealCoord
- RNA_SuiteAssignment
- RNA_SuiteInfo
- RNA_SuiteName
- VDW_Grid
- VDW_RepScreenInfo
class BasePair(builtins.object) |
| |
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(rosetta.core.pose.rna.BasePair) -> NoneType
doc
2. __init__(rosetta.core.pose.rna.BasePair, int) -> NoneType
doc
3. __init__(rosetta.core.pose.rna.BasePair, int, int) -> NoneType
doc
4. __init__(rosetta.core.pose.rna.BasePair, int, int, rosetta.core.chemical.rna.BaseEdge) -> NoneType
doc
5. __init__(rosetta.core.pose.rna.BasePair, int, int, rosetta.core.chemical.rna.BaseEdge, rosetta.core.chemical.rna.BaseEdge) -> NoneType
doc
6. __init__(self : rosetta.core.pose.rna.BasePair, res1 : int, res2 : int, edge1 : rosetta.core.chemical.rna.BaseEdge, edge2 : rosetta.core.chemical.rna.BaseEdge, orientation : rosetta.core.chemical.rna.BaseDoubletOrientation) -> NoneType
7. __init__(self : rosetta.core.pose.rna.BasePair, : rosetta.core.pose.rna.BasePair) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- __str__(...) from builtins.PyCapsule
- __str__(rosetta.core.pose.rna.BasePair) -> str
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.pose.rna.BasePair, : rosetta.core.pose.rna.BasePair) -> rosetta.core.pose.rna.BasePair
- edge1(...) from builtins.PyCapsule
- edge1(rosetta.core.pose.rna.BasePair) -> rosetta.core.chemical.rna.BaseEdge
- edge2(...) from builtins.PyCapsule
- edge2(rosetta.core.pose.rna.BasePair) -> rosetta.core.chemical.rna.BaseEdge
- flipped(...) from builtins.PyCapsule
- flipped(rosetta.core.pose.rna.BasePair) -> rosetta.core.pose.rna.BasePair
- orientation(...) from builtins.PyCapsule
- orientation(rosetta.core.pose.rna.BasePair) -> rosetta.core.chemical.rna.BaseDoubletOrientation
- res1(...) from builtins.PyCapsule
- res1(rosetta.core.pose.rna.BasePair) -> int
- res2(...) from builtins.PyCapsule
- res2(rosetta.core.pose.rna.BasePair) -> int
- set_edge1(...) from builtins.PyCapsule
- set_edge1(self : rosetta.core.pose.rna.BasePair, setting : rosetta.core.chemical.rna.BaseEdge) -> NoneType
- set_edge2(...) from builtins.PyCapsule
- set_edge2(self : rosetta.core.pose.rna.BasePair, setting : rosetta.core.chemical.rna.BaseEdge) -> NoneType
- set_orientation(...) from builtins.PyCapsule
- set_orientation(self : rosetta.core.pose.rna.BasePair, setting : rosetta.core.chemical.rna.BaseDoubletOrientation) -> NoneType
- set_res1(...) from builtins.PyCapsule
- set_res1(self : rosetta.core.pose.rna.BasePair, setting : int) -> NoneType
- set_res2(...) from builtins.PyCapsule
- set_res2(self : rosetta.core.pose.rna.BasePair, setting : int) -> NoneType
|
class RNA_IdealCoord(builtins.object) |
| |
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(rosetta.core.pose.rna.RNA_IdealCoord) -> NoneType
2. __init__(self : rosetta.core.pose.rna.RNA_IdealCoord, : rosetta.core.pose.rna.RNA_IdealCoord) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- apply(...) from builtins.PyCapsule
- apply(*args, **kwargs)
Overloaded function.
1. apply(self : rosetta.core.pose.rna.RNA_IdealCoord, pose : rosetta.core.pose.Pose, seqpos : int, pucker : rosetta.core.chemical.rna.PuckerState) -> NoneType
2. apply(self : rosetta.core.pose.rna.RNA_IdealCoord, pose : rosetta.core.pose.Pose, seqpos : int, pucker : rosetta.core.chemical.rna.PuckerState, keep_backbone_torsion : bool) -> NoneType
3. apply(self : rosetta.core.pose.rna.RNA_IdealCoord, pose : rosetta.core.pose.Pose, puckers : rosetta.utility.vector1_core_chemical_rna_PuckerState) -> NoneType
4. apply(self : rosetta.core.pose.rna.RNA_IdealCoord, pose : rosetta.core.pose.Pose, puckers : rosetta.utility.vector1_core_chemical_rna_PuckerState, keep_backbone_torsion : bool) -> NoneType
5. apply(self : rosetta.core.pose.rna.RNA_IdealCoord, pose : rosetta.core.pose.Pose) -> NoneType
6. apply(self : rosetta.core.pose.rna.RNA_IdealCoord, pose : rosetta.core.pose.Pose, keep_backbone_torsion : bool) -> NoneType
- apply_pucker(...) from builtins.PyCapsule
- apply_pucker(*args, **kwargs)
Overloaded function.
1. apply_pucker(self : rosetta.core.pose.rna.RNA_IdealCoord, pose : rosetta.core.pose.Pose, seqpos : int, pucker : rosetta.core.chemical.rna.PuckerState) -> NoneType
2. apply_pucker(self : rosetta.core.pose.rna.RNA_IdealCoord, pose : rosetta.core.pose.Pose, seqpos : int, pucker : rosetta.core.chemical.rna.PuckerState, keep_backbone_torsion : bool) -> NoneType
- is_torsion_exists(...) from builtins.PyCapsule
- is_torsion_exists(self : rosetta.core.pose.rna.RNA_IdealCoord, pose : rosetta.core.pose.Pose, torsion_id : rosetta.core.id.TorsionID) -> bool
|
class RNA_SuiteName(builtins.object) |
|
///////////////////////////////////// |
|
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(rosetta.core.pose.rna.RNA_SuiteName) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(*args, **kwargs)
Overloaded function.
1. assign(self : rosetta.core.pose.rna.RNA_SuiteName, torsions_in : rosetta.utility.vector1_double) -> rosetta.core.pose.rna.RNA_SuiteAssignment
2. assign(self : rosetta.core.pose.rna.RNA_SuiteName, torsions_in : rosetta.utility.vector1_double, deriv : rosetta.utility.vector1_double) -> rosetta.core.pose.rna.RNA_SuiteAssignment
3. assign(self : rosetta.core.pose.rna.RNA_SuiteName, pose : rosetta.core.pose.Pose, res : int) -> rosetta.core.pose.rna.RNA_SuiteAssignment
- name2suite(...) from builtins.PyCapsule
- name2suite(self : rosetta.core.pose.rna.RNA_SuiteName, name : str) -> rosetta.core.pose.rna.RNA_SuiteInfo
- update_centers(...) from builtins.PyCapsule
- update_centers(self : rosetta.core.pose.rna.RNA_SuiteName, centers : rosetta.utility.vector1_utility_vector1_double_std_allocator_double_t, tags : rosetta.utility.vector1_std_string) -> NoneType
Data descriptors defined here:
- alphamax
- alphamin
- betamax
- betamin
- delta2max
- delta2min
- delta3max
- delta3min
- delta_cutoff
- epsilonmax
- epsilonmin
- gamma_cutoff1
- gamma_cutoff2
- gammammax
- gammammin
- gammapmax
- gammapmin
- gammatmax
- gammatmin
- zetamax
- zetamin
|
class VDW_Grid(builtins.object) |
| |
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(rosetta.core.pose.rna.VDW_Grid) -> NoneType
2. __init__(self : rosetta.core.pose.rna.VDW_Grid, src : rosetta.core.pose.rna.VDW_Grid) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.pose.rna.VDW_Grid, : rosetta.core.pose.rna.VDW_Grid) -> rosetta.core.pose.rna.VDW_Grid
- get_atom_bin_size(...) from builtins.PyCapsule
- get_atom_bin_size(rosetta.core.pose.rna.VDW_Grid) -> float
- get_bin(...) from builtins.PyCapsule
- get_bin(self : rosetta.core.pose.rna.VDW_Grid, x : int, y : int, z : int) -> bool
- get_bin_max(...) from builtins.PyCapsule
- get_bin_max(rosetta.core.pose.rna.VDW_Grid) -> int
- get_bin_offset(...) from builtins.PyCapsule
- get_bin_offset(rosetta.core.pose.rna.VDW_Grid) -> int
- get_ref_xyz(...) from builtins.PyCapsule
- get_ref_xyz(rosetta.core.pose.rna.VDW_Grid) -> rosetta.numeric.xyzVector_double_t
- get_xyz_bin(...) from builtins.PyCapsule
- get_xyz_bin(self : rosetta.core.pose.rna.VDW_Grid, xyz_bin : rosetta.core.pose.rna.Atom_Bin) -> bool
- is_occupied(...) from builtins.PyCapsule
- is_occupied(rosetta.core.pose.rna.VDW_Grid) -> bool
- reset(...) from builtins.PyCapsule
- reset(*args, **kwargs)
Overloaded function.
1. reset(rosetta.core.pose.rna.VDW_Grid) -> NoneType
2. reset(self : rosetta.core.pose.rna.VDW_Grid, occupied_xyz_bins_ : rosetta.utility.vector1_core_pose_rna_Atom_Bin) -> NoneType
- set_atom_bin_size(...) from builtins.PyCapsule
- set_atom_bin_size(self : rosetta.core.pose.rna.VDW_Grid, value : float) -> NoneType
- set_bin(...) from builtins.PyCapsule
- set_bin(self : rosetta.core.pose.rna.VDW_Grid, x : int, y : int, z : int, value : bool) -> NoneType
- set_bin_max(...) from builtins.PyCapsule
- set_bin_max(self : rosetta.core.pose.rna.VDW_Grid, value : int) -> NoneType
- set_bin_offset(...) from builtins.PyCapsule
- set_bin_offset(self : rosetta.core.pose.rna.VDW_Grid, value : int) -> NoneType
- set_ref_xyz(...) from builtins.PyCapsule
- set_ref_xyz(self : rosetta.core.pose.rna.VDW_Grid, value : rosetta.numeric.xyzVector_double_t) -> NoneType
- set_xyz_bin(...) from builtins.PyCapsule
- set_xyz_bin(self : rosetta.core.pose.rna.VDW_Grid, xyz_bin : rosetta.core.pose.rna.Atom_Bin, value : bool) -> NoneType
- setup(...) from builtins.PyCapsule
- setup(self : rosetta.core.pose.rna.VDW_Grid, bin_max : int) -> NoneType
- size(...) from builtins.PyCapsule
- size(rosetta.core.pose.rna.VDW_Grid) -> int
|
|