rosetta.core.pose.rna
index
(built-in)

Bindings for core::pose::rna namespace

 
Classes
       
builtins.object
Atom_Bin
BasePair
BaseStack
RNA_IdealCoord
RNA_SuiteAssignment
RNA_SuiteInfo
RNA_SuiteName
VDW_Grid
VDW_RepScreenInfo

 
class Atom_Bin(builtins.object)
     Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(rosetta.core.pose.rna.Atom_Bin) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.

Data descriptors defined here:
x
y
z

 
class BasePair(builtins.object)
     Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(rosetta.core.pose.rna.BasePair) -> NoneType
 
doc
 
2. __init__(rosetta.core.pose.rna.BasePair, int) -> NoneType
 
doc
 
3. __init__(rosetta.core.pose.rna.BasePair, int, int) -> NoneType
 
doc
 
4. __init__(rosetta.core.pose.rna.BasePair, int, int, rosetta.core.chemical.rna.BaseEdge) -> NoneType
 
doc
 
5. __init__(rosetta.core.pose.rna.BasePair, int, int, rosetta.core.chemical.rna.BaseEdge, rosetta.core.chemical.rna.BaseEdge) -> NoneType
 
doc
 
6. __init__(self : rosetta.core.pose.rna.BasePair, res1 : int, res2 : int, edge1 : rosetta.core.chemical.rna.BaseEdge, edge2 : rosetta.core.chemical.rna.BaseEdge, orientation : rosetta.core.chemical.rna.BaseDoubletOrientation) -> NoneType
 
7. __init__(self : rosetta.core.pose.rna.BasePair,  : rosetta.core.pose.rna.BasePair) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
__str__(...) from builtins.PyCapsule
__str__(rosetta.core.pose.rna.BasePair) -> str
assign(...) from builtins.PyCapsule
assign(self : rosetta.core.pose.rna.BasePair,  : rosetta.core.pose.rna.BasePair) -> rosetta.core.pose.rna.BasePair
edge1(...) from builtins.PyCapsule
edge1(rosetta.core.pose.rna.BasePair) -> rosetta.core.chemical.rna.BaseEdge
edge2(...) from builtins.PyCapsule
edge2(rosetta.core.pose.rna.BasePair) -> rosetta.core.chemical.rna.BaseEdge
flipped(...) from builtins.PyCapsule
flipped(rosetta.core.pose.rna.BasePair) -> rosetta.core.pose.rna.BasePair
orientation(...) from builtins.PyCapsule
orientation(rosetta.core.pose.rna.BasePair) -> rosetta.core.chemical.rna.BaseDoubletOrientation
res1(...) from builtins.PyCapsule
res1(rosetta.core.pose.rna.BasePair) -> int
res2(...) from builtins.PyCapsule
res2(rosetta.core.pose.rna.BasePair) -> int
set_edge1(...) from builtins.PyCapsule
set_edge1(self : rosetta.core.pose.rna.BasePair, setting : rosetta.core.chemical.rna.BaseEdge) -> NoneType
set_edge2(...) from builtins.PyCapsule
set_edge2(self : rosetta.core.pose.rna.BasePair, setting : rosetta.core.chemical.rna.BaseEdge) -> NoneType
set_orientation(...) from builtins.PyCapsule
set_orientation(self : rosetta.core.pose.rna.BasePair, setting : rosetta.core.chemical.rna.BaseDoubletOrientation) -> NoneType
set_res1(...) from builtins.PyCapsule
set_res1(self : rosetta.core.pose.rna.BasePair, setting : int) -> NoneType
set_res2(...) from builtins.PyCapsule
set_res2(self : rosetta.core.pose.rna.BasePair, setting : int) -> NoneType

 
class BaseStack(builtins.object)
     Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(rosetta.core.pose.rna.BaseStack) -> NoneType
 
2. __init__(self : rosetta.core.pose.rna.BaseStack,  : rosetta.core.pose.rna.BaseStack) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
__str__(...) from builtins.PyCapsule
__str__(rosetta.core.pose.rna.BaseStack) -> str
assign(...) from builtins.PyCapsule
assign(self : rosetta.core.pose.rna.BaseStack,  : rosetta.core.pose.rna.BaseStack) -> rosetta.core.pose.rna.BaseStack
orientation(...) from builtins.PyCapsule
orientation(rosetta.core.pose.rna.BaseStack) -> rosetta.core.chemical.rna.BaseDoubletOrientation
res1(...) from builtins.PyCapsule
res1(rosetta.core.pose.rna.BaseStack) -> int
res2(...) from builtins.PyCapsule
res2(rosetta.core.pose.rna.BaseStack) -> int
set_orientation(...) from builtins.PyCapsule
set_orientation(self : rosetta.core.pose.rna.BaseStack, setting : rosetta.core.chemical.rna.BaseDoubletOrientation) -> NoneType
set_res1(...) from builtins.PyCapsule
set_res1(self : rosetta.core.pose.rna.BaseStack, setting : int) -> NoneType
set_res2(...) from builtins.PyCapsule
set_res2(self : rosetta.core.pose.rna.BaseStack, setting : int) -> NoneType
set_which_side(...) from builtins.PyCapsule
set_which_side(self : rosetta.core.pose.rna.BaseStack, setting : rosetta.core.chemical.rna.BaseStackWhichSide) -> NoneType
which_side(...) from builtins.PyCapsule
which_side(rosetta.core.pose.rna.BaseStack) -> rosetta.core.chemical.rna.BaseStackWhichSide

 
class RNA_IdealCoord(builtins.object)
     Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(rosetta.core.pose.rna.RNA_IdealCoord) -> NoneType
 
2. __init__(self : rosetta.core.pose.rna.RNA_IdealCoord,  : rosetta.core.pose.rna.RNA_IdealCoord) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
apply(...) from builtins.PyCapsule
apply(*args, **kwargs)
Overloaded function.
 
1. apply(self : rosetta.core.pose.rna.RNA_IdealCoord, pose : rosetta.core.pose.Pose, seqpos : int, pucker : rosetta.core.chemical.rna.PuckerState) -> NoneType
 
2. apply(self : rosetta.core.pose.rna.RNA_IdealCoord, pose : rosetta.core.pose.Pose, seqpos : int, pucker : rosetta.core.chemical.rna.PuckerState, keep_backbone_torsion : bool) -> NoneType
 
3. apply(self : rosetta.core.pose.rna.RNA_IdealCoord, pose : rosetta.core.pose.Pose, puckers : rosetta.utility.vector1_core_chemical_rna_PuckerState) -> NoneType
 
4. apply(self : rosetta.core.pose.rna.RNA_IdealCoord, pose : rosetta.core.pose.Pose, puckers : rosetta.utility.vector1_core_chemical_rna_PuckerState, keep_backbone_torsion : bool) -> NoneType
 
5. apply(self : rosetta.core.pose.rna.RNA_IdealCoord, pose : rosetta.core.pose.Pose) -> NoneType
 
6. apply(self : rosetta.core.pose.rna.RNA_IdealCoord, pose : rosetta.core.pose.Pose, keep_backbone_torsion : bool) -> NoneType
apply_pucker(...) from builtins.PyCapsule
apply_pucker(*args, **kwargs)
Overloaded function.
 
1. apply_pucker(self : rosetta.core.pose.rna.RNA_IdealCoord, pose : rosetta.core.pose.Pose, seqpos : int, pucker : rosetta.core.chemical.rna.PuckerState) -> NoneType
 
2. apply_pucker(self : rosetta.core.pose.rna.RNA_IdealCoord, pose : rosetta.core.pose.Pose, seqpos : int, pucker : rosetta.core.chemical.rna.PuckerState, keep_backbone_torsion : bool) -> NoneType
is_torsion_exists(...) from builtins.PyCapsule
is_torsion_exists(self : rosetta.core.pose.rna.RNA_IdealCoord, pose : rosetta.core.pose.Pose, torsion_id : rosetta.core.id.TorsionID) -> bool

 
class RNA_SuiteAssignment(builtins.object)
    ///////////////////////////////////////////////
 
  Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(self : rosetta.core.pose.rna.RNA_SuiteAssignment, name_in : str, suiteness_in : float, dist_in : float) -> NoneType
 
2. __init__(rosetta.core.pose.rna.RNA_SuiteAssignment) -> NoneType
 
3. __init__(self : rosetta.core.pose.rna.RNA_SuiteAssignment,  : rosetta.core.pose.rna.RNA_SuiteAssignment) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.core.pose.rna.RNA_SuiteAssignment,  : rosetta.core.pose.rna.RNA_SuiteAssignment) -> rosetta.core.pose.rna.RNA_SuiteAssignment

Data descriptors defined here:
dist
name
suiteness

 
class RNA_SuiteInfo(builtins.object)
    //////////////////////////////////////
 
  Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(self : rosetta.core.pose.rna.RNA_SuiteInfo, name_in : str, classifier_in : int, torsion_in : rosetta.utility.vector1_double) -> NoneType
 
2. __init__(rosetta.core.pose.rna.RNA_SuiteInfo) -> NoneType
 
3. __init__(self : rosetta.core.pose.rna.RNA_SuiteInfo,  : rosetta.core.pose.rna.RNA_SuiteInfo) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.core.pose.rna.RNA_SuiteInfo,  : rosetta.core.pose.rna.RNA_SuiteInfo) -> rosetta.core.pose.rna.RNA_SuiteInfo

Data descriptors defined here:
classifier
name
torsion

 
class RNA_SuiteName(builtins.object)
    /////////////////////////////////////
 
  Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(rosetta.core.pose.rna.RNA_SuiteName) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(*args, **kwargs)
Overloaded function.
 
1. assign(self : rosetta.core.pose.rna.RNA_SuiteName, torsions_in : rosetta.utility.vector1_double) -> rosetta.core.pose.rna.RNA_SuiteAssignment
 
2. assign(self : rosetta.core.pose.rna.RNA_SuiteName, torsions_in : rosetta.utility.vector1_double, deriv : rosetta.utility.vector1_double) -> rosetta.core.pose.rna.RNA_SuiteAssignment
 
3. assign(self : rosetta.core.pose.rna.RNA_SuiteName, pose : rosetta.core.pose.Pose, res : int) -> rosetta.core.pose.rna.RNA_SuiteAssignment
name2suite(...) from builtins.PyCapsule
name2suite(self : rosetta.core.pose.rna.RNA_SuiteName, name : str) -> rosetta.core.pose.rna.RNA_SuiteInfo
update_centers(...) from builtins.PyCapsule
update_centers(self : rosetta.core.pose.rna.RNA_SuiteName, centers : rosetta.utility.vector1_utility_vector1_double_std_allocator_double_t, tags : rosetta.utility.vector1_std_string) -> NoneType

Data descriptors defined here:
alphamax
alphamin
betamax
betamin
delta2max
delta2min
delta3max
delta3min
delta_cutoff
epsilonmax
epsilonmin
gamma_cutoff1
gamma_cutoff2
gammammax
gammammin
gammapmax
gammapmin
gammatmax
gammatmin
zetamax
zetamin

 
class VDW_Grid(builtins.object)
     Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(rosetta.core.pose.rna.VDW_Grid) -> NoneType
 
2. __init__(self : rosetta.core.pose.rna.VDW_Grid, src : rosetta.core.pose.rna.VDW_Grid) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.core.pose.rna.VDW_Grid,  : rosetta.core.pose.rna.VDW_Grid) -> rosetta.core.pose.rna.VDW_Grid
get_atom_bin_size(...) from builtins.PyCapsule
get_atom_bin_size(rosetta.core.pose.rna.VDW_Grid) -> float
get_bin(...) from builtins.PyCapsule
get_bin(self : rosetta.core.pose.rna.VDW_Grid, x : int, y : int, z : int) -> bool
get_bin_max(...) from builtins.PyCapsule
get_bin_max(rosetta.core.pose.rna.VDW_Grid) -> int
get_bin_offset(...) from builtins.PyCapsule
get_bin_offset(rosetta.core.pose.rna.VDW_Grid) -> int
get_ref_xyz(...) from builtins.PyCapsule
get_ref_xyz(rosetta.core.pose.rna.VDW_Grid) -> rosetta.numeric.xyzVector_double_t
get_xyz_bin(...) from builtins.PyCapsule
get_xyz_bin(self : rosetta.core.pose.rna.VDW_Grid, xyz_bin : rosetta.core.pose.rna.Atom_Bin) -> bool
is_occupied(...) from builtins.PyCapsule
is_occupied(rosetta.core.pose.rna.VDW_Grid) -> bool
reset(...) from builtins.PyCapsule
reset(*args, **kwargs)
Overloaded function.
 
1. reset(rosetta.core.pose.rna.VDW_Grid) -> NoneType
 
2. reset(self : rosetta.core.pose.rna.VDW_Grid, occupied_xyz_bins_ : rosetta.utility.vector1_core_pose_rna_Atom_Bin) -> NoneType
set_atom_bin_size(...) from builtins.PyCapsule
set_atom_bin_size(self : rosetta.core.pose.rna.VDW_Grid, value : float) -> NoneType
set_bin(...) from builtins.PyCapsule
set_bin(self : rosetta.core.pose.rna.VDW_Grid, x : int, y : int, z : int, value : bool) -> NoneType
set_bin_max(...) from builtins.PyCapsule
set_bin_max(self : rosetta.core.pose.rna.VDW_Grid, value : int) -> NoneType
set_bin_offset(...) from builtins.PyCapsule
set_bin_offset(self : rosetta.core.pose.rna.VDW_Grid, value : int) -> NoneType
set_ref_xyz(...) from builtins.PyCapsule
set_ref_xyz(self : rosetta.core.pose.rna.VDW_Grid, value : rosetta.numeric.xyzVector_double_t) -> NoneType
set_xyz_bin(...) from builtins.PyCapsule
set_xyz_bin(self : rosetta.core.pose.rna.VDW_Grid, xyz_bin : rosetta.core.pose.rna.Atom_Bin, value : bool) -> NoneType
setup(...) from builtins.PyCapsule
setup(self : rosetta.core.pose.rna.VDW_Grid, bin_max : int) -> NoneType
size(...) from builtins.PyCapsule
size(rosetta.core.pose.rna.VDW_Grid) -> int

 
class VDW_RepScreenInfo(builtins.object)
     Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(rosetta.core.pose.rna.VDW_RepScreenInfo) -> NoneType
 
2. __init__(self : rosetta.core.pose.rna.VDW_RepScreenInfo, src : rosetta.core.pose.rna.VDW_RepScreenInfo) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.core.pose.rna.VDW_RepScreenInfo,  : rosetta.core.pose.rna.VDW_RepScreenInfo) -> rosetta.core.pose.rna.VDW_RepScreenInfo

Data descriptors defined here:
VDW_align_res
VDW_ignore_res
VDW_pose
align_working_to_vdw_atom_id_map
full_align_res
import_ID
in_root_partition
input_string
pose_name
working_align_res

 
Functions
       
add_virtual_O2Prime_hydrogen(...) method of builtins.PyCapsule instance
add_virtual_O2Prime_hydrogen(pose : rosetta.core.pose.Pose) -> NoneType
apply_Aform_torsions(...) method of builtins.PyCapsule instance
apply_Aform_torsions(pose : rosetta.core.pose.Pose, n : int) -> NoneType
apply_ideal_c2endo_sugar_coords(...) method of builtins.PyCapsule instance
apply_ideal_c2endo_sugar_coords(pose : rosetta.core.pose.Pose, i : int) -> NoneType
apply_non_main_chain_sugar_coords(...) method of builtins.PyCapsule instance
apply_non_main_chain_sugar_coords(non_main_chain_sugar_coords : rosetta.utility.vector1_numeric_xyzVector_double_t, pose : rosetta.core.pose.Pose, reference_pose : rosetta.core.pose.Pose, i : int) -> NoneType
apply_pucker(...) method of builtins.PyCapsule instance
apply_pucker(*args, **kwargs)
Overloaded function.
 
1. apply_pucker(pose : rosetta.core.pose.Pose, i : int) -> NoneType
 
2. apply_pucker(pose : rosetta.core.pose.Pose, i : int, pucker_state : rosetta.core.chemical.rna.PuckerState) -> NoneType
 
3. apply_pucker(pose : rosetta.core.pose.Pose, i : int, pucker_state : rosetta.core.chemical.rna.PuckerState, skip_same_state : bool) -> NoneType
 
4. apply_pucker(pose : rosetta.core.pose.Pose, i : int, pucker_state : rosetta.core.chemical.rna.PuckerState, skip_same_state : bool, idealize_coord : bool) -> NoneType
apply_virtual_rna_residue_variant_type(...) method of builtins.PyCapsule instance
apply_virtual_rna_residue_variant_type(*args, **kwargs)
Overloaded function.
 
1. apply_virtual_rna_residue_variant_type(pose : rosetta.core.pose.Pose, seq_num : int) -> NoneType
 
2. apply_virtual_rna_residue_variant_type(pose : rosetta.core.pose.Pose, seq_num : int, apply_check : bool) -> NoneType
 
3. apply_virtual_rna_residue_variant_type(pose : rosetta.core.pose.Pose, seq_num : int, working_cutpoint_closed_list : rosetta.utility.vector1_unsigned_long) -> NoneType
 
4. apply_virtual_rna_residue_variant_type(pose : rosetta.core.pose.Pose, seq_num : int, working_cutpoint_closed_list : rosetta.utility.vector1_unsigned_long, apply_check : bool) -> NoneType
assign_pucker(...) method of builtins.PyCapsule instance
assign_pucker(pose : rosetta.core.pose.Pose, rsd_id : int) -> rosetta.core.chemical.rna.PuckerState
classify_base_pairs(...) method of builtins.PyCapsule instance
classify_base_pairs(*args, **kwargs)
Overloaded function.
 
1. classify_base_pairs(pose : rosetta.core.pose.Pose, base_pair_list : rosetta.utility.vector1_core_pose_rna_BasePair, is_bulged : rosetta.utility.vector1_bool) -> NoneType
 
2. classify_base_pairs(pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_core_pose_rna_BasePair
correctly_position_cutpoint_phosphate_torsions(...) method of builtins.PyCapsule instance
correctly_position_cutpoint_phosphate_torsions(current_pose : rosetta.core.pose.Pose, five_prime_chainbreak : int) -> NoneType
figure_out_reasonable_rna_fold_tree(...) method of builtins.PyCapsule instance
figure_out_reasonable_rna_fold_tree(pose : rosetta.core.pose.Pose) -> NoneType
fix_sugar_coords(...) method of builtins.PyCapsule instance
fix_sugar_coords(atoms_for_which_we_need_new_dofs : rosetta.utility.vector1_std_string, non_main_chain_sugar_coords : rosetta.utility.vector1_numeric_xyzVector_double_t, pose : rosetta.core.pose.Pose, reference_pose : rosetta.core.pose.Pose, i : int) -> NoneType
get_LW_orientation(...) method of builtins.PyCapsule instance
get_LW_orientation(edge1 : rosetta.core.chemical.rna.BaseEdge, edge2 : rosetta.core.chemical.rna.BaseEdge, orientation : rosetta.core.chemical.rna.BaseDoubletOrientation) -> rosetta.core.chemical.rna.LW_BaseDoubletOrientation
get_atom_bin(...) method of builtins.PyCapsule instance
get_atom_bin(atom_pos : rosetta.numeric.xyzVector_double_t, ref_xyz : rosetta.numeric.xyzVector_double_t, atom_bin_size : float, bin_offset : int) -> rosetta.core.pose.rna.Atom_Bin
get_base_doublet_orientation_from_LW(...) method of builtins.PyCapsule instance
get_base_doublet_orientation_from_LW(edge1 : rosetta.core.chemical.rna.BaseEdge, edge2 : rosetta.core.chemical.rna.BaseEdge, lw_orientation : rosetta.core.chemical.rna.LW_BaseDoubletOrientation) -> rosetta.core.chemical.rna.BaseDoubletOrientation
get_number_base_stacks(...) method of builtins.PyCapsule instance
get_number_base_stacks(pose_input : rosetta.core.pose.Pose) -> int
get_op2_op1_sign(...) method of builtins.PyCapsule instance
get_op2_op1_sign(*args, **kwargs)
Overloaded function.
 
1. get_op2_op1_sign(pose : rosetta.core.pose.Pose) -> float
 
2. get_op2_op1_sign(pose : rosetta.core.pose.Pose, res_num : int) -> float
get_residue_base_state(...) method of builtins.PyCapsule instance
get_residue_base_state(pose : rosetta.core.pose.Pose, seq_num : int) -> rosetta.core.chemical.rna.ChiState
get_residue_pucker_state(...) method of builtins.PyCapsule instance
get_residue_pucker_state(pose : rosetta.core.pose.Pose, seq_num : int) -> rosetta.core.chemical.rna.PuckerState
has_virtual_rna_residue_variant_type(...) method of builtins.PyCapsule instance
has_virtual_rna_residue_variant_type(pose : rosetta.core.pose.Pose, seq_num : int) -> bool
initialize_atoms_for_which_we_need_new_dofs(...) method of builtins.PyCapsule instance
initialize_atoms_for_which_we_need_new_dofs(atoms_for_which_we_need_new_dofs : rosetta.utility.vector1_std_string, pose : rosetta.core.pose.Pose, i : int) -> NoneType
is_atom_bin_in_range(...) method of builtins.PyCapsule instance
is_atom_bin_in_range(atom_pos_bin : rosetta.core.pose.rna.Atom_Bin, bin_max : int) -> bool
is_cutpoint_closed_atom(...) method of builtins.PyCapsule instance
is_cutpoint_closed_atom(rsd : rosetta.core.conformation.Residue, id : rosetta.core.id.AtomID) -> bool
is_cutpoint_closed_torsion(...) method of builtins.PyCapsule instance
is_cutpoint_closed_torsion(pose : rosetta.core.pose.Pose, torsion_id : rosetta.core.id.TorsionID) -> bool
is_cutpoint_open(...) method of builtins.PyCapsule instance
is_cutpoint_open(pose : rosetta.core.pose.Pose, i : int) -> bool
is_rna_chainbreak(...) method of builtins.PyCapsule instance
is_rna_chainbreak(pose : rosetta.core.pose.Pose, i : int) -> bool
is_torsion_valid(...) method of builtins.PyCapsule instance
is_torsion_valid(*args, **kwargs)
Overloaded function.
 
1. is_torsion_valid(pose : rosetta.core.pose.Pose, torsion_id : rosetta.core.id.TorsionID) -> bool
 
2. is_torsion_valid(pose : rosetta.core.pose.Pose, torsion_id : rosetta.core.id.TorsionID, verbose : bool) -> bool
 
3. is_torsion_valid(pose : rosetta.core.pose.Pose, torsion_id : rosetta.core.id.TorsionID, verbose : bool, skip_chainbreak_torsions : bool) -> bool
make_phosphate_nomenclature_matches_mini(...) method of builtins.PyCapsule instance
make_phosphate_nomenclature_matches_mini(pose : rosetta.core.pose.Pose) -> NoneType
mutate_position(...) method of builtins.PyCapsule instance
mutate_position(pose : rosetta.core.pose.Pose, i : int, new_seq : str) -> bool
output_boolean(...) method of builtins.PyCapsule instance
output_boolean(tag : str, boolean : bool) -> NoneType
prepare_scratch_residue(...) method of builtins.PyCapsule instance
prepare_scratch_residue(scratch_rsd : rosetta.core.conformation.Residue, start_rsd : rosetta.core.conformation.Residue, non_main_chain_sugar_coords : rosetta.utility.vector1_numeric_xyzVector_double_t, pose : rosetta.core.pose.Pose) -> NoneType
print_torsion_info(...) method of builtins.PyCapsule instance
print_torsion_info(pose : rosetta.core.pose.Pose, torsion_id : rosetta.core.id.TorsionID) -> NoneType
remove_virtual_rna_residue_variant_type(...) method of builtins.PyCapsule instance
remove_virtual_rna_residue_variant_type(pose : rosetta.core.pose.Pose, seq_num : int) -> NoneType
string_to_int(...) method of builtins.PyCapsule instance
string_to_int(input_string : str) -> int
tokenize(...) method of builtins.PyCapsule instance
tokenize(str : str, delimiters : str) -> rosetta.utility.vector1_std_string
virtualize_5prime_phosphates(...) method of builtins.PyCapsule instance
virtualize_5prime_phosphates(pose : rosetta.core.pose.Pose) -> NoneType