Bindings for core::pose::reference_pose namespace

Classes
		builtins.object ReferencePose ReferencePoseSet   class ReferencePose(builtins.object)     ReferencePose class, used to store sets of ReferencePose data for tracking how a pose changes over the course of a protocol.     Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.core.pose.reference_pose.ReferencePose) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.pose.reference_pose.ReferencePose,  : rosetta.core.pose.reference_pose.ReferencePose) -> rosetta.core.pose.reference_pose.ReferencePose clone(...) from builtins.PyCapsule clone(rosetta.core.pose.reference_pose.ReferencePose) -> rosetta.core.pose.reference_pose.ReferencePose   Make a copy of this ReferencePose object (allocate actual memory for it)  and return an owning pointer to the copy. corresponding_residue_in_current(...) from builtins.PyCapsule corresponding_residue_in_current(self : rosetta.core.pose.reference_pose.ReferencePose, res_in_ref : int) -> int   Get the residue in the current pose corresponding to a particular residue in the  reference pose.      Should return 0 if there is no corresponding residue in the current pose (e.g. if the  residue was deleted.)  Throws an error if there was no residue with the given index in the  reference pose. decrement_reference_pose_mapping_after_seqpos(...) from builtins.PyCapsule decrement_reference_pose_mapping_after_seqpos(self : rosetta.core.pose.reference_pose.ReferencePose, seqpos : int) -> NoneType   Find all mappings to indices in the new pose after seqpos, and decrement them by 1.      If there is no ReferencePose object, do nothing. get_self_ptr(...) from builtins.PyCapsule get_self_ptr(*args, **kwargs) Overloaded function.   1. get_self_ptr(rosetta.core.pose.reference_pose.ReferencePose) -> rosetta.core.pose.reference_pose.ReferencePose   Get const owning pointer (e.g. from a reference).   2. get_self_ptr(rosetta.core.pose.reference_pose.ReferencePose) -> rosetta.core.pose.reference_pose.ReferencePose   Get owning pointer (e.g. from a reference). get_self_weak_ptr(...) from builtins.PyCapsule get_self_weak_ptr(*args, **kwargs) Overloaded function.   1. get_self_weak_ptr(rosetta.core.pose.reference_pose.ReferencePose) -> rosetta.std.weak_ptr_const_core_pose_reference_pose_ReferencePose_t   Get const access (weak) pointer (e.g. from a reference).   2. get_self_weak_ptr(rosetta.core.pose.reference_pose.ReferencePose) -> rosetta.std.weak_ptr_core_pose_reference_pose_ReferencePose_t   Get access (weak) pointer (e.g. from a reference). increment_reference_pose_mapping_after_seqpos(...) from builtins.PyCapsule increment_reference_pose_mapping_after_seqpos(self : rosetta.core.pose.reference_pose.ReferencePose, seqpos : int) -> NoneType   Find all mappings to indices in the new pose after seqpos, and increment them by 1.      If there is no ReferencePose object, do nothing. initialize_residue_map_from_pose(...) from builtins.PyCapsule initialize_residue_map_from_pose(self : rosetta.core.pose.reference_pose.ReferencePose, pose : rosetta.core.pose.Pose) -> NoneType   Initializes the residue_map_ based on an input reference pose.      After this operation, the residue_map_ is a very uninteresting map  that maps every residue index in the pose onto itself.  This also sets the  stores_residue_map_ bit to true. stores_residue_map(...) from builtins.PyCapsule stores_residue_map(rosetta.core.pose.reference_pose.ReferencePose) -> bool   Returns true if this ReferencePose object stores a map of  (old residue indices->new residue indices), false otherwise. zero_reference_pose_mapping_at_seqpos(...) from builtins.PyCapsule zero_reference_pose_mapping_at_seqpos(self : rosetta.core.pose.reference_pose.ReferencePose, seqpos : int) -> NoneType   Find all mappings to indices in the new pose to seqpos, and set them to point to residue 0 (deletion signal).      If there is no ReferencePose object, do nothing.   class ReferencePoseSet(builtins.object)     ReferencePoseSet class, used to store sets of ReferencePose data for tracking how a pose changes over the course of a protocol.     Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.core.pose.reference_pose.ReferencePoseSet) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. add_and_initialize_reference_pose(...) from builtins.PyCapsule add_and_initialize_reference_pose(*args, **kwargs) Overloaded function.   1. add_and_initialize_reference_pose(self : rosetta.core.pose.reference_pose.ReferencePoseSet, key_string : str, pose : rosetta.core.pose.Pose) -> NoneType   Given a reference pose, create a new ReferencePose object and initialize it  based on the reference pose, then add it to the current map.      After this operation, the map holds a new ReferencePoseOP pointing to a  very uninteresting ReferencePose object that maps a list of residues onto themselves,  accessible by the key string.  If override_current is set to true, will overrwrite any reference pose with the key_string.   2. add_and_initialize_reference_pose(self : rosetta.core.pose.reference_pose.ReferencePoseSet, key_string : str, pose : rosetta.core.pose.Pose, override_current : bool) -> NoneType   Given a reference pose, create a new ReferencePose object and initialize it  based on the reference pose, then add it to the current map.      After this operation, the map holds a new ReferencePoseOP pointing to a  very uninteresting ReferencePose object that maps a list of residues onto themselves,  accessible by the key string.  If override_current is set to true, will overrwrite any reference pose with the key_string. assign(...) from builtins.PyCapsule assign(self : rosetta.core.pose.reference_pose.ReferencePoseSet,  : rosetta.core.pose.reference_pose.ReferencePoseSet) -> rosetta.core.pose.reference_pose.ReferencePoseSet clone(...) from builtins.PyCapsule clone(rosetta.core.pose.reference_pose.ReferencePoseSet) -> rosetta.core.pose.reference_pose.ReferencePoseSet   Make a copy of this ReferencePoseSet object (allocate actual memory for it)  and return an owning pointer to the copy. corresponding_residue_in_current(...) from builtins.PyCapsule corresponding_residue_in_current(self : rosetta.core.pose.reference_pose.ReferencePoseSet, res_index_in_ref : int, ref_pose_key_string : str) -> int   Get the corresponding residue in the current pose to a residue in a reference pose.      Should return 0 if no corresponding residue exists in the current pose, and throw an  error if the residue index provided as a key did not exist in the reference pose. decrement_reference_pose_mapping_after_seqpos(...) from builtins.PyCapsule decrement_reference_pose_mapping_after_seqpos(self : rosetta.core.pose.reference_pose.ReferencePoseSet, seqpos : int) -> NoneType   Find all mappings to indices in the new pose after seqpos in all ReferencePose objects, and decrement them by 1.      If there is no ReferencePose object, do nothing. empty(...) from builtins.PyCapsule empty(rosetta.core.pose.reference_pose.ReferencePoseSet) -> bool   Returns true if and only if there are no ReferencePose objects in this ReferencePoseSet. get_self_ptr(...) from builtins.PyCapsule get_self_ptr(*args, **kwargs) Overloaded function.   1. get_self_ptr(rosetta.core.pose.reference_pose.ReferencePoseSet) -> rosetta.core.pose.reference_pose.ReferencePoseSet   Get const owning pointer (e.g. from a reference).   2. get_self_ptr(rosetta.core.pose.reference_pose.ReferencePoseSet) -> rosetta.core.pose.reference_pose.ReferencePoseSet   Get owning pointer (e.g. from a reference). get_self_weak_ptr(...) from builtins.PyCapsule get_self_weak_ptr(*args, **kwargs) Overloaded function.   1. get_self_weak_ptr(rosetta.core.pose.reference_pose.ReferencePoseSet) -> rosetta.std.weak_ptr_const_core_pose_reference_pose_ReferencePoseSet_t   Get const access (weak) pointer (e.g. from a reference).   2. get_self_weak_ptr(rosetta.core.pose.reference_pose.ReferencePoseSet) -> rosetta.std.weak_ptr_core_pose_reference_pose_ReferencePoseSet_t   Get access (weak) pointer (e.g. from a reference). increment_reference_pose_mapping_after_seqpos(...) from builtins.PyCapsule increment_reference_pose_mapping_after_seqpos(self : rosetta.core.pose.reference_pose.ReferencePoseSet, seqpos : int) -> NoneType   Find all mappings to indices in the new pose after seqpos in all ReferencePose objects, and increment them by 1.      If there is no ReferencePose object, do nothing. n_reference_pose(...) from builtins.PyCapsule n_reference_pose(rosetta.core.pose.reference_pose.ReferencePoseSet) -> int   Get the number of ReferencePose objects in this ReferencePoseSet. reference_pose(...) from builtins.PyCapsule reference_pose(self : rosetta.core.pose.reference_pose.ReferencePoseSet, key_string : str) -> rosetta.core.pose.reference_pose.ReferencePose   Get an owning pointer to a reference pose stored in the reference pose map, given a key string.      An error is thrown if the key string doesn't associate with anything (i.e. if the reference pose  doesn't exist). reference_pose_cop(...) from builtins.PyCapsule reference_pose_cop(self : rosetta.core.pose.reference_pose.ReferencePoseSet, key_string : str) -> rosetta.core.pose.reference_pose.ReferencePose   Get a const owning pointer to a reference pose stored in the reference pose map, given a key string.      An error is thrown if the key string doesn't associate with anything (i.e. if the reference pose  doesn't exist). zero_reference_pose_mapping_at_seqpos(...) from builtins.PyCapsule zero_reference_pose_mapping_at_seqpos(self : rosetta.core.pose.reference_pose.ReferencePoseSet, seqpos : int) -> NoneType   Find all mappings to indices in the new pose to seqpos in all ReferencePose objects, and set them to point to residue 0 (deletion signal).      If there is no ReferencePose object, do nothing.