Bindings for core::pose::full_model_info namespace

Classes
		builtins.object FullModelParameterType FullModelParameters SubMotifInfo rosetta.basic.datacache.CacheableData(builtins.object) FullModelInfo   class FullModelInfo(rosetta.basic.datacache.CacheableData)     /////////////////////////////////////////////////////////////////////////////////////////////////     Keep track of all information related to how a subpose 'fits in' to global modeling scheme.      See FullModelParameters for more information on the global modeling scheme, including           full_sequence, etc.     Method resolution order: FullModelInfo rosetta.basic.datacache.CacheableData builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, full_sequence : str, cutpoint_open_in_full_model : rosetta.utility.vector1_unsigned_long, res_numbers_in_pose : rosetta.utility.vector1_unsigned_long) -> NoneType   2. __init__(self : handle, full_model_parameters : rosetta.core.pose.full_model_info.FullModelParameters) -> NoneType   3. __init__(self : handle, pose : rosetta.core.pose.Pose) -> NoneType   4. __init__(handle, rosetta.core.pose.full_model_info.FullModelInfo) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. add_other_pose(...) from builtins.PyCapsule add_other_pose(self : rosetta.core.pose.full_model_info.FullModelInfo, pose : rosetta.core.pose.Pose) -> NoneType add_submotif_info(...) from builtins.PyCapsule add_submotif_info(*args, **kwargs) Overloaded function.   1. add_submotif_info(self : rosetta.core.pose.full_model_info.FullModelInfo, res_list : rosetta.utility.vector1_unsigned_long, tag : str) -> NoneType   2. add_submotif_info(self : rosetta.core.pose.full_model_info.FullModelInfo, res_list : rosetta.utility.vector1_unsigned_long, tag : str, seed : bool) -> NoneType   3. add_submotif_info(self : rosetta.core.pose.full_model_info.FullModelInfo, submotif_info_list : rosetta.utility.vector1_std_shared_ptr_core_pose_full_model_info_SubMotifInfo_t) -> NoneType   4. add_submotif_info(self : rosetta.core.pose.full_model_info.FullModelInfo, submotif_info_op : rosetta.core.pose.full_model_info.SubMotifInfo) -> NoneType assign(...) from builtins.PyCapsule assign(self : rosetta.core.pose.full_model_info.FullModelInfo,  : rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.core.pose.full_model_info.FullModelInfo calc_rms_res(...) from builtins.PyCapsule calc_rms_res(rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.utility.vector1_unsigned_long chains_in_full_model(...) from builtins.PyCapsule chains_in_full_model(rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.utility.vector1_unsigned_long clear_other_pose_list(...) from builtins.PyCapsule clear_other_pose_list(rosetta.core.pose.full_model_info.FullModelInfo) -> NoneType clear_res_list(...) from builtins.PyCapsule clear_res_list(rosetta.core.pose.full_model_info.FullModelInfo) -> NoneType clone(...) from builtins.PyCapsule clone(rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.basic.datacache.CacheableData clone_info(...) from builtins.PyCapsule clone_info(rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.core.pose.full_model_info.FullModelInfo conventional_chains(...) from builtins.PyCapsule conventional_chains(rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.utility.vector1_char conventional_numbering(...) from builtins.PyCapsule conventional_numbering(rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.utility.vector1_int cutpoint_open_in_full_model(...) from builtins.PyCapsule cutpoint_open_in_full_model(rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.utility.vector1_unsigned_long delete_submotif_info(...) from builtins.PyCapsule delete_submotif_info(*args, **kwargs) Overloaded function.   1. delete_submotif_info(self : rosetta.core.pose.full_model_info.FullModelInfo, res_list : rosetta.utility.vector1_unsigned_long, tag : str) -> NoneType   2. delete_submotif_info(self : rosetta.core.pose.full_model_info.FullModelInfo, res_list : rosetta.utility.vector1_unsigned_long, tag : str, seed : bool) -> NoneType   3. delete_submotif_info(self : rosetta.core.pose.full_model_info.FullModelInfo, submotif_info_list : rosetta.utility.vector1_std_shared_ptr_core_pose_full_model_info_SubMotifInfo_t) -> NoneType   4. delete_submotif_info(self : rosetta.core.pose.full_model_info.FullModelInfo, submotif_info_op : rosetta.core.pose.full_model_info.SubMotifInfo) -> NoneType dock_domain_map(...) from builtins.PyCapsule dock_domain_map(rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.utility.vector1_unsigned_long extra_minimize_res(...) from builtins.PyCapsule extra_minimize_res(rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.utility.vector1_unsigned_long find_index_in_other_pose_list(...) from builtins.PyCapsule find_index_in_other_pose_list(self : rosetta.core.pose.full_model_info.FullModelInfo, pose : rosetta.core.pose.Pose) -> int fixed_domain_map(...) from builtins.PyCapsule fixed_domain_map(rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.utility.vector1_unsigned_long full_model_parameters(...) from builtins.PyCapsule full_model_parameters(rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.core.pose.full_model_info.FullModelParameters full_sequence(...) from builtins.PyCapsule full_sequence(rosetta.core.pose.full_model_info.FullModelInfo) -> str full_to_sub(...) from builtins.PyCapsule full_to_sub(*args, **kwargs) Overloaded function.   1. full_to_sub(self : rosetta.core.pose.full_model_info.FullModelInfo, res_in_full_model_numbering : rosetta.utility.vector1_unsigned_long) -> rosetta.utility.vector1_unsigned_long   2. full_to_sub(self : rosetta.core.pose.full_model_info.FullModelInfo, res_in_full_model_numbering : int) -> int   3. full_to_sub(rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.std.map_unsigned_long_unsigned_long get_idx_for_other_pose(...) from builtins.PyCapsule get_idx_for_other_pose(self : rosetta.core.pose.full_model_info.FullModelInfo, pose : rosetta.core.pose.Pose) -> int get_idx_for_other_pose_with_residue(...) from builtins.PyCapsule get_idx_for_other_pose_with_residue(self : rosetta.core.pose.full_model_info.FullModelInfo, input_res : int) -> int get_idx_for_other_pose_with_residues(...) from builtins.PyCapsule get_idx_for_other_pose_with_residues(self : rosetta.core.pose.full_model_info.FullModelInfo, input_res : rosetta.utility.vector1_unsigned_long) -> int in_a_submotif(...) from builtins.PyCapsule in_a_submotif(*args, **kwargs) Overloaded function.   1. in_a_submotif(self : rosetta.core.pose.full_model_info.FullModelInfo, res_list : rosetta.utility.vector1_unsigned_long) -> bool   2. in_a_submotif(self : rosetta.core.pose.full_model_info.FullModelInfo, res_list : rosetta.utility.vector1_unsigned_long, check_other_poses : bool) -> bool in_a_submotif_seed(...) from builtins.PyCapsule in_a_submotif_seed(*args, **kwargs) Overloaded function.   1. in_a_submotif_seed(self : rosetta.core.pose.full_model_info.FullModelInfo, res_list : rosetta.utility.vector1_unsigned_long) -> bool   2. in_a_submotif_seed(self : rosetta.core.pose.full_model_info.FullModelInfo, res_list : rosetta.utility.vector1_unsigned_long, check_other_poses : bool) -> bool input_domain_map(...) from builtins.PyCapsule input_domain_map(rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.utility.vector1_unsigned_long is_a_submotif(...) from builtins.PyCapsule is_a_submotif(*args, **kwargs) Overloaded function.   1. is_a_submotif(rosetta.core.pose.full_model_info.FullModelInfo) -> bool   2. is_a_submotif(self : rosetta.core.pose.full_model_info.FullModelInfo, res_list : rosetta.utility.vector1_unsigned_long) -> bool   3. is_a_submotif(self : rosetta.core.pose.full_model_info.FullModelInfo, res_list : rosetta.utility.vector1_unsigned_long, check_other_poses : bool) -> bool is_a_submotif_seed(...) from builtins.PyCapsule is_a_submotif_seed(*args, **kwargs) Overloaded function.   1. is_a_submotif_seed(rosetta.core.pose.full_model_info.FullModelInfo) -> bool   2. is_a_submotif_seed(self : rosetta.core.pose.full_model_info.FullModelInfo, res_list : rosetta.utility.vector1_unsigned_long) -> bool   3. is_a_submotif_seed(self : rosetta.core.pose.full_model_info.FullModelInfo, res_list : rosetta.utility.vector1_unsigned_long, check_other_poses : bool) -> bool jump_pairs(...) from builtins.PyCapsule jump_pairs(rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.utility.vector1_std_pair_unsigned_long_unsigned_long_t jump_res_map(...) from builtins.PyCapsule jump_res_map(rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.utility.vector1_unsigned_long other_pose_list(...) from builtins.PyCapsule other_pose_list(rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.utility.vector1_std_shared_ptr_core_pose_Pose_t preferred_root_res(...) from builtins.PyCapsule preferred_root_res(rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.utility.vector1_unsigned_long remove_other_pose_at_idx(...) from builtins.PyCapsule remove_other_pose_at_idx(self : rosetta.core.pose.full_model_info.FullModelInfo, idx : int) -> NoneType res_list(...) from builtins.PyCapsule res_list(rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.utility.vector1_unsigned_long rna_anti_chi_res(...) from builtins.PyCapsule rna_anti_chi_res(rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.utility.vector1_unsigned_long rna_block_stack_above_res(...) from builtins.PyCapsule rna_block_stack_above_res(rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.utility.vector1_unsigned_long rna_block_stack_below_res(...) from builtins.PyCapsule rna_block_stack_below_res(rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.utility.vector1_unsigned_long rna_bulge_res(...) from builtins.PyCapsule rna_bulge_res(rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.utility.vector1_unsigned_long rna_sample_sugar_res(...) from builtins.PyCapsule rna_sample_sugar_res(rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.utility.vector1_unsigned_long rna_syn_chi_res(...) from builtins.PyCapsule rna_syn_chi_res(rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.utility.vector1_unsigned_long rna_terminal_res(...) from builtins.PyCapsule rna_terminal_res(rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.utility.vector1_unsigned_long sample_res(...) from builtins.PyCapsule sample_res(rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.utility.vector1_unsigned_long set_full_model_parameters(...) from builtins.PyCapsule set_full_model_parameters(self : rosetta.core.pose.full_model_info.FullModelInfo, setting : rosetta.core.pose.full_model_info.FullModelParameters) -> NoneType set_other_pose_list(...) from builtins.PyCapsule set_other_pose_list(self : rosetta.core.pose.full_model_info.FullModelInfo, setting : rosetta.utility.vector1_std_shared_ptr_core_pose_Pose_t) -> NoneType set_res_list(...) from builtins.PyCapsule set_res_list(self : rosetta.core.pose.full_model_info.FullModelInfo, res_list : rosetta.utility.vector1_unsigned_long) -> NoneType show_submotif_info_list(...) from builtins.PyCapsule show_submotif_info_list(*args, **kwargs) Overloaded function.   1. show_submotif_info_list(rosetta.core.pose.full_model_info.FullModelInfo) -> NoneType   2. show_submotif_info_list(self : rosetta.core.pose.full_model_info.FullModelInfo, for_all_poses : bool) -> NoneType size(...) from builtins.PyCapsule size(rosetta.core.pose.full_model_info.FullModelInfo) -> int sub_to_full(...) from builtins.PyCapsule sub_to_full(*args, **kwargs) Overloaded function.   1. sub_to_full(self : rosetta.core.pose.full_model_info.FullModelInfo, res : rosetta.utility.vector1_unsigned_long) -> rosetta.utility.vector1_unsigned_long   2. sub_to_full(self : rosetta.core.pose.full_model_info.FullModelInfo, res : int) -> int submotif_info(...) from builtins.PyCapsule submotif_info(*args, **kwargs) Overloaded function.   1. submotif_info(self : rosetta.core.pose.full_model_info.FullModelInfo, res_list : rosetta.utility.vector1_unsigned_long) -> rosetta.core.pose.full_model_info.SubMotifInfo   2. submotif_info(self : rosetta.core.pose.full_model_info.FullModelInfo, res_list : rosetta.utility.vector1_unsigned_long, check_other_poses : bool) -> rosetta.core.pose.full_model_info.SubMotifInfo submotif_info_containing_residues(...) from builtins.PyCapsule submotif_info_containing_residues(*args, **kwargs) Overloaded function.   1. submotif_info_containing_residues(self : rosetta.core.pose.full_model_info.FullModelInfo, res_list : rosetta.utility.vector1_unsigned_long) -> rosetta.core.pose.full_model_info.SubMotifInfo   2. submotif_info_containing_residues(self : rosetta.core.pose.full_model_info.FullModelInfo, res_list : rosetta.utility.vector1_unsigned_long, check_other_poses : bool) -> rosetta.core.pose.full_model_info.SubMotifInfo submotif_info_list(...) from builtins.PyCapsule submotif_info_list(rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.utility.vector1_std_shared_ptr_core_pose_full_model_info_SubMotifInfo_t update_submotif_info_list(...) from builtins.PyCapsule update_submotif_info_list(rosetta.core.pose.full_model_info.FullModelInfo) -> NoneType working_res(...) from builtins.PyCapsule working_res(rosetta.core.pose.full_model_info.FullModelInfo) -> rosetta.utility.vector1_unsigned_long Methods inherited from rosetta.basic.datacache.CacheableData: get_self_ptr(...) from builtins.PyCapsule get_self_ptr(*args, **kwargs) Overloaded function.   1. get_self_ptr(rosetta.basic.datacache.CacheableData) -> rosetta.basic.datacache.CacheableData   self pointers   2. get_self_ptr(rosetta.basic.datacache.CacheableData) -> rosetta.basic.datacache.CacheableData get_self_weak_ptr(...) from builtins.PyCapsule get_self_weak_ptr(*args, **kwargs) Overloaded function.   1. get_self_weak_ptr(rosetta.basic.datacache.CacheableData) -> rosetta.std.weak_ptr_const_basic_datacache_CacheableData_t   2. get_self_weak_ptr(rosetta.basic.datacache.CacheableData) -> rosetta.std.weak_ptr_basic_datacache_CacheableData_t   class FullModelParameterType(builtins.object)       Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(rosetta.core.pose.full_model_info.FullModelParameterType, rosetta.core.pose.full_model_info.FullModelParameterType) -> bool __hash__(...) from builtins.PyCapsule __hash__(rosetta.core.pose.full_model_info.FullModelParameterType) -> int __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.pose.full_model_info.FullModelParameterType, int) -> NoneType   2. __init__(rosetta.core.pose.full_model_info.FullModelParameterType, int) -> NoneType __int__(...) from builtins.PyCapsule __int__(rosetta.core.pose.full_model_info.FullModelParameterType) -> int __ne__(...) from builtins.PyCapsule __ne__(rosetta.core.pose.full_model_info.FullModelParameterType, rosetta.core.pose.full_model_info.FullModelParameterType) -> bool __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. __repr__(...) from builtins.PyCapsule __repr__(rosetta.core.pose.full_model_info.FullModelParameterType) -> str Data and other attributes defined here: CALC_RMS = FullModelParameterType.CALC_RMS CUTPOINT_OPEN = FullModelParameterType.CUTPOINT_OPEN DISULFIDE = FullModelParameterType.DISULFIDE DOCK_DOMAIN = FullModelParameterType.DOCK_DOMAIN EXTRA_MINIMIZE = FullModelParameterType.EXTRA_MINIMIZE EXTRA_MINIMIZE_JUMP = FullModelParameterType.EXTRA_MINIMIZE_JUMP FIXED_DOMAIN = FullModelParameterType.FIXED_DOMAIN INPUT_DOMAIN = FullModelParameterType.INPUT_DOMAIN JUMP = FullModelParameterType.JUMP LAST_TYPE = FullModelParameterType.LAST_TYPE NO_TYPE = FullModelParameterType.NO_TYPE PREFERRED_ROOT = FullModelParameterType.PREFERRED_ROOT RNA_ANTI_CHI = FullModelParameterType.RNA_ANTI_CHI RNA_BLOCK_STACK_ABOVE = FullModelParameterType.RNA_BLOCK_STACK_ABOVE RNA_BLOCK_STACK_BELOW = FullModelParameterType.RNA_BLOCK_STACK_BELOW RNA_BULGE = FullModelParameterType.RNA_BULGE RNA_NORTH_SUGAR = FullModelParameterType.RNA_NORTH_SUGAR RNA_SAMPLE_SUGAR = FullModelParameterType.RNA_SAMPLE_SUGAR RNA_SOUTH_SUGAR = FullModelParameterType.RNA_SOUTH_SUGAR RNA_SYN_CHI = FullModelParameterType.RNA_SYN_CHI RNA_TERMINAL = FullModelParameterType.RNA_TERMINAL SAMPLE = FullModelParameterType.SAMPLE WORKING = FullModelParameterType.WORKING   class FullModelParameters(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.pose.full_model_info.FullModelParameters) -> NoneType   2. __init__(self : rosetta.core.pose.full_model_info.FullModelParameters, full_sequence : str) -> NoneType   3. __init__(self : rosetta.core.pose.full_model_info.FullModelParameters, full_sequence : str, cutpoint_open_in_full_model : rosetta.utility.vector1_unsigned_long, res_numbers_in_pose : rosetta.utility.vector1_unsigned_long) -> NoneType   4. __init__(self : rosetta.core.pose.full_model_info.FullModelParameters, pose : rosetta.core.pose.Pose, res_list : rosetta.utility.vector1_unsigned_long) -> NoneType   5. __init__(self : rosetta.core.pose.full_model_info.FullModelParameters, src : rosetta.core.pose.full_model_info.FullModelParameters) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. __str__(...) from builtins.PyCapsule __str__(rosetta.core.pose.full_model_info.FullModelParameters) -> str assign(...) from builtins.PyCapsule assign(self : rosetta.core.pose.full_model_info.FullModelParameters,  : rosetta.core.pose.full_model_info.FullModelParameters) -> rosetta.core.pose.full_model_info.FullModelParameters chains_in_full_model(...) from builtins.PyCapsule chains_in_full_model(rosetta.core.pose.full_model_info.FullModelParameters) -> rosetta.utility.vector1_unsigned_long clone(...) from builtins.PyCapsule clone(rosetta.core.pose.full_model_info.FullModelParameters) -> rosetta.core.pose.full_model_info.FullModelParameters conventional_chains(...) from builtins.PyCapsule conventional_chains(rosetta.core.pose.full_model_info.FullModelParameters) -> rosetta.utility.vector1_char conventional_numbering(...) from builtins.PyCapsule conventional_numbering(rosetta.core.pose.full_model_info.FullModelParameters) -> rosetta.utility.vector1_int conventional_to_full(...) from builtins.PyCapsule conventional_to_full(*args, **kwargs) Overloaded function.   1. conventional_to_full(self : rosetta.core.pose.full_model_info.FullModelParameters, res_list : rosetta.utility.vector1_int) -> rosetta.utility.vector1_unsigned_long   2. conventional_to_full(self : rosetta.core.pose.full_model_info.FullModelParameters, resnum_and_chain : (rosetta.utility.vector1_int, rosetta.utility.vector1_char)) -> rosetta.utility.vector1_unsigned_long   3. conventional_to_full(self : rosetta.core.pose.full_model_info.FullModelParameters, res_num : int) -> int   4. conventional_to_full(self : rosetta.core.pose.full_model_info.FullModelParameters, res_num : int, chain : str) -> int cst_set(...) from builtins.PyCapsule cst_set(rosetta.core.pose.full_model_info.FullModelParameters) -> core::scoring::constraints::ConstraintSet cst_string(...) from builtins.PyCapsule cst_string(rosetta.core.pose.full_model_info.FullModelParameters) -> str full_annotated_sequence(...) from builtins.PyCapsule full_annotated_sequence(rosetta.core.pose.full_model_info.FullModelParameters) -> str full_model_pose_for_constraints(...) from builtins.PyCapsule full_model_pose_for_constraints(rosetta.core.pose.full_model_info.FullModelParameters) -> rosetta.core.pose.Pose full_sequence(...) from builtins.PyCapsule full_sequence(rosetta.core.pose.full_model_info.FullModelParameters) -> str full_to_conventional(...) from builtins.PyCapsule full_to_conventional(*args, **kwargs) Overloaded function.   1. full_to_conventional(self : rosetta.core.pose.full_model_info.FullModelParameters, res_list : rosetta.utility.vector1_unsigned_long) -> rosetta.utility.vector1_int   2. full_to_conventional(self : rosetta.core.pose.full_model_info.FullModelParameters, res_num : int) -> int full_to_conventional_resnum_and_chain(...) from builtins.PyCapsule full_to_conventional_resnum_and_chain(*args, **kwargs) Overloaded function.   1. full_to_conventional_resnum_and_chain(self : rosetta.core.pose.full_model_info.FullModelParameters, res_list : rosetta.utility.vector1_unsigned_long) -> (rosetta.utility.vector1_int, rosetta.utility.vector1_char)   2. full_to_conventional_resnum_and_chain(self : rosetta.core.pose.full_model_info.FullModelParameters, res_num : int) -> (int, str) get_parameter(...) from builtins.PyCapsule get_parameter(self : rosetta.core.pose.full_model_info.FullModelParameters, type : rosetta.core.pose.full_model_info.FullModelParameterType) -> rosetta.utility.vector1_unsigned_long get_parameter_as_res_lists(...) from builtins.PyCapsule get_parameter_as_res_lists(self : rosetta.core.pose.full_model_info.FullModelParameters, type : rosetta.core.pose.full_model_info.FullModelParameterType) -> rosetta.std.map_unsigned_long_utility_vector1_unsigned_long_std_allocator_unsigned_long_t get_res_list(...) from builtins.PyCapsule get_res_list(*args, **kwargs) Overloaded function.   1. get_res_list(self : rosetta.core.pose.full_model_info.FullModelParameters, type : rosetta.core.pose.full_model_info.FullModelParameterType, value : int) -> rosetta.utility.vector1_unsigned_long   2. get_res_list(self : rosetta.core.pose.full_model_info.FullModelParameters, type : rosetta.core.pose.full_model_info.FullModelParameterType) -> rosetta.utility.vector1_unsigned_long get_res_list_as_pairs(...) from builtins.PyCapsule get_res_list_as_pairs(self : rosetta.core.pose.full_model_info.FullModelParameters, type : rosetta.core.pose.full_model_info.FullModelParameterType) -> rosetta.utility.vector1_std_pair_unsigned_long_unsigned_long_t has_conventional_residue(...) from builtins.PyCapsule has_conventional_residue(*args, **kwargs) Overloaded function.   1. has_conventional_residue(self : rosetta.core.pose.full_model_info.FullModelParameters, res_num : int) -> bool   2. has_conventional_residue(self : rosetta.core.pose.full_model_info.FullModelParameters, res_num : int, chain : str) -> bool non_standard_residue_map(...) from builtins.PyCapsule non_standard_residue_map(rosetta.core.pose.full_model_info.FullModelParameters) -> rosetta.std.map_unsigned_long_std_string parent_full_model_parameters(...) from builtins.PyCapsule parent_full_model_parameters(rosetta.core.pose.full_model_info.FullModelParameters) -> rosetta.core.pose.full_model_info.FullModelParameters read_cst_file(...) from builtins.PyCapsule read_cst_file(self : rosetta.core.pose.full_model_info.FullModelParameters, cst_file : str) -> NoneType read_disulfides(...) from builtins.PyCapsule read_disulfides(self : rosetta.core.pose.full_model_info.FullModelParameters, disulfide_file : str) -> NoneType set_conventional_chains(...) from builtins.PyCapsule set_conventional_chains(self : rosetta.core.pose.full_model_info.FullModelParameters, setting : rosetta.utility.vector1_char) -> NoneType set_conventional_numbering(...) from builtins.PyCapsule set_conventional_numbering(self : rosetta.core.pose.full_model_info.FullModelParameters, setting : rosetta.utility.vector1_int) -> NoneType set_cst_string(...) from builtins.PyCapsule set_cst_string(self : rosetta.core.pose.full_model_info.FullModelParameters, setting : str) -> NoneType set_non_standard_residue_map(...) from builtins.PyCapsule set_non_standard_residue_map(self : rosetta.core.pose.full_model_info.FullModelParameters, setting : rosetta.std.map_unsigned_long_std_string) -> NoneType set_parameter(...) from builtins.PyCapsule set_parameter(self : rosetta.core.pose.full_model_info.FullModelParameters, type : rosetta.core.pose.full_model_info.FullModelParameterType, setting : rosetta.utility.vector1_unsigned_long) -> NoneType set_parameter_as_res_list(...) from builtins.PyCapsule set_parameter_as_res_list(self : rosetta.core.pose.full_model_info.FullModelParameters, type : rosetta.core.pose.full_model_info.FullModelParameterType, setting : rosetta.utility.vector1_unsigned_long) -> NoneType set_parameter_as_res_list_in_pairs(...) from builtins.PyCapsule set_parameter_as_res_list_in_pairs(self : rosetta.core.pose.full_model_info.FullModelParameters, type : rosetta.core.pose.full_model_info.FullModelParameterType, setting : rosetta.utility.vector1_unsigned_long) -> NoneType set_parameter_as_res_lists(...) from builtins.PyCapsule set_parameter_as_res_lists(self : rosetta.core.pose.full_model_info.FullModelParameters, type : rosetta.core.pose.full_model_info.FullModelParameterType, setting : rosetta.std.map_unsigned_long_utility_vector1_unsigned_long_std_allocator_unsigned_long_t) -> NoneType set_parent_full_model_parameters(...) from builtins.PyCapsule set_parent_full_model_parameters(self : rosetta.core.pose.full_model_info.FullModelParameters, setting : rosetta.core.pose.full_model_info.FullModelParameters) -> NoneType set_slice_res_list(...) from builtins.PyCapsule set_slice_res_list(self : rosetta.core.pose.full_model_info.FullModelParameters, setting : rosetta.utility.vector1_unsigned_long) -> NoneType size(...) from builtins.PyCapsule size(rosetta.core.pose.full_model_info.FullModelParameters) -> int slice(...) from builtins.PyCapsule slice(self : rosetta.core.pose.full_model_info.FullModelParameters, slice_res : rosetta.utility.vector1_unsigned_long) -> rosetta.core.pose.full_model_info.FullModelParameters slice_res_list(...) from builtins.PyCapsule slice_res_list(rosetta.core.pose.full_model_info.FullModelParameters) -> rosetta.utility.vector1_unsigned_long update_pose_and_cst_set_from_cst_string(...) from builtins.PyCapsule update_pose_and_cst_set_from_cst_string(self : rosetta.core.pose.full_model_info.FullModelParameters, rsd_type_set : rosetta.core.chemical.ResidueTypeSet) -> NoneType   class SubMotifInfo(builtins.object)     ///////////////////////////////////////////////////////////////////////////     Keep track of information about a submotif added to a pose.     Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.pose.full_model_info.SubMotifInfo) -> NoneType   2. __init__(rosetta.core.pose.full_model_info.SubMotifInfo, rosetta.utility.vector1_unsigned_long, str) -> NoneType   doc   3. __init__(self : rosetta.core.pose.full_model_info.SubMotifInfo, res_list : rosetta.utility.vector1_unsigned_long, tag : str, seed : bool) -> NoneType   4. __init__(self : rosetta.core.pose.full_model_info.SubMotifInfo, src : rosetta.core.pose.full_model_info.SubMotifInfo) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.pose.full_model_info.SubMotifInfo,  : rosetta.core.pose.full_model_info.SubMotifInfo) -> rosetta.core.pose.full_model_info.SubMotifInfo clone(...) from builtins.PyCapsule clone(rosetta.core.pose.full_model_info.SubMotifInfo) -> rosetta.core.pose.full_model_info.SubMotifInfo res_list(...) from builtins.PyCapsule res_list(*args, **kwargs) Overloaded function.   1. res_list(rosetta.core.pose.full_model_info.SubMotifInfo) -> rosetta.utility.vector1_unsigned_long   2. res_list(self : rosetta.core.pose.full_model_info.SubMotifInfo, index : int) -> int   3. res_list(self : rosetta.core.pose.full_model_info.SubMotifInfo, res_list : rosetta.utility.vector1_unsigned_long) -> NoneType seed(...) from builtins.PyCapsule seed(*args, **kwargs) Overloaded function.   1. seed(rosetta.core.pose.full_model_info.SubMotifInfo) -> bool   2. seed(self : rosetta.core.pose.full_model_info.SubMotifInfo, seed : bool) -> NoneType sorted_res_list(...) from builtins.PyCapsule sorted_res_list(*args, **kwargs) Overloaded function.   1. sorted_res_list(rosetta.core.pose.full_model_info.SubMotifInfo) -> rosetta.utility.vector1_unsigned_long   2. sorted_res_list(self : rosetta.core.pose.full_model_info.SubMotifInfo, index : int) -> int tag(...) from builtins.PyCapsule tag(*args, **kwargs) Overloaded function.   1. tag(rosetta.core.pose.full_model_info.SubMotifInfo) -> str   2. tag(self : rosetta.core.pose.full_model_info.SubMotifInfo, tag : str) -> NoneType

Functions
		check_all_residues_sampled(...) method of builtins.PyCapsule instance check_all_residues_sampled(pose : rosetta.core.pose.Pose) -> bool check_full_model_info_OK(...) method of builtins.PyCapsule instance check_full_model_info_OK(pose : rosetta.core.pose.Pose) -> bool check_sample_sugar_in_full_model_info(...) method of builtins.PyCapsule instance check_sample_sugar_in_full_model_info(pose : rosetta.core.pose.Pose, i : int) -> bool const_full_model_info(...) method of builtins.PyCapsule instance const_full_model_info(pose : rosetta.core.pose.Pose) -> rosetta.core.pose.full_model_info.FullModelInfo figure_out_chain_numbers_from_full_model_info(...) method of builtins.PyCapsule instance figure_out_chain_numbers_from_full_model_info(pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_unsigned_long figure_out_chain_numbers_from_full_model_info_const(...) method of builtins.PyCapsule instance figure_out_chain_numbers_from_full_model_info_const(pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_unsigned_long figure_out_conventional_chains_from_full_model_info(...) method of builtins.PyCapsule instance figure_out_conventional_chains_from_full_model_info(pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_char figure_out_dock_domain_map_from_full_model_info_const(...) method of builtins.PyCapsule instance figure_out_dock_domain_map_from_full_model_info_const(pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_unsigned_long figure_out_pose_domain_map(...) method of builtins.PyCapsule instance figure_out_pose_domain_map(pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_unsigned_long figure_out_pose_domain_map_const(...) method of builtins.PyCapsule instance figure_out_pose_domain_map_const(pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_unsigned_long full_model_info_defined(...) method of builtins.PyCapsule instance full_model_info_defined(pose : rosetta.core.pose.Pose) -> bool full_model_parameter_type_from_string(...) method of builtins.PyCapsule instance full_model_parameter_type_from_string(name : str) -> rosetta.core.pose.full_model_info.FullModelParameterType full_model_size(...) method of builtins.PyCapsule instance full_model_size(pose : rosetta.core.pose.Pose) -> int full_to_sub(...) method of builtins.PyCapsule instance full_to_sub(*args, **kwargs) Overloaded function.   1. full_to_sub(i : int, pose : rosetta.core.pose.Pose) -> int   2. full_to_sub(res_list : rosetta.utility.vector1_unsigned_long, pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_unsigned_long get_chain_connections(...) method of builtins.PyCapsule instance get_chain_connections(pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_std_pair_unsigned_long_unsigned_long_t get_chain_for_full_model_resnum(...) method of builtins.PyCapsule instance get_chain_for_full_model_resnum(resnum : int, pose : rosetta.core.pose.Pose) -> int get_chain_for_resnum(...) method of builtins.PyCapsule instance get_chain_for_resnum(resnum : int, pose : rosetta.core.pose.Pose) -> int get_chains_from_cutpoint_open(...) method of builtins.PyCapsule instance get_chains_from_cutpoint_open(cutpoint_open : rosetta.utility.vector1_unsigned_long, nres : int) -> rosetta.utility.vector1_unsigned_long get_chains_from_pdb_info(...) method of builtins.PyCapsule instance get_chains_from_pdb_info(pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_char get_chains_full(...) method of builtins.PyCapsule instance get_chains_full(pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_unsigned_long get_connection_domains(...) method of builtins.PyCapsule instance get_connection_domains(chain_connections : rosetta.utility.vector1_std_pair_unsigned_long_unsigned_long_t, nchains : int) -> rosetta.utility.vector1_unsigned_long get_cutpoint_open_from_chains(...) method of builtins.PyCapsule instance get_cutpoint_open_from_chains(chains : rosetta.utility.vector1_unsigned_long) -> rosetta.utility.vector1_unsigned_long get_fixed_domain_from_full_model_info_const(...) method of builtins.PyCapsule instance get_fixed_domain_from_full_model_info_const(pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_unsigned_long get_input_domain_from_full_model_info_const(...) method of builtins.PyCapsule instance get_input_domain_from_full_model_info_const(pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_unsigned_long get_move_elements_from_full_model_info(...) method of builtins.PyCapsule instance get_move_elements_from_full_model_info(pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_utility_vector1_unsigned_long_std_allocator_unsigned_long_t get_move_elements_from_full_model_info_const(...) method of builtins.PyCapsule instance get_move_elements_from_full_model_info_const(pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_utility_vector1_unsigned_long_std_allocator_unsigned_long_t get_moving_res_from_full_model_info(...) method of builtins.PyCapsule instance get_moving_res_from_full_model_info(pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_unsigned_long get_number_missing_residues_and_connections(...) method of builtins.PyCapsule instance get_number_missing_residues_and_connections(*args, **kwargs) Overloaded function.   1. get_number_missing_residues_and_connections(pose : rosetta.core.pose.Pose) -> int   Finds the number of missing residues in a pose.      This function returns the number of missing residues in the pose.  The pose is passed by nonconst reference, so that the full_model_info can be  setup, if needed.   2. get_number_missing_residues_and_connections(pose : rosetta.core.pose.Pose, missing_residues : rosetta.utility.vector1_char) -> int   Finds the number of missing residues in a pose.      This function returns the number of missing residues in the pose.  The missing_residues vector is passed by nonconst reference, so its values  can be modified and accessed by this function and the calling method.   3. get_number_missing_residues_and_connections(pose : rosetta.core.pose.Pose, loop_suites : rosetta.utility.vector1_utility_vector1_unsigned_long_std_allocator_unsigned_long_t) -> int   Finds the number of missing residues in a pose.      This function returns the number of missing residues in the pose.  The loop_suites vector is passed by nonconst reference, so its values  can be modified and accessed by this function and the calling method.   4. get_number_missing_residues_and_connections(pose : rosetta.core.pose.Pose, missing_residues : rosetta.utility.vector1_char, loop_suites : rosetta.utility.vector1_utility_vector1_unsigned_long_std_allocator_unsigned_long_t) -> int   Finds the number of missing residues in a pose.      This function returns the number of missing residues in the pose.  The missing_res and loop_suites vectors are passed by nonconst reference, so their  values can be modified and accessed by this function and the calling method. get_res_list_const(...) method of builtins.PyCapsule instance get_res_list_const(pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_unsigned_long get_res_list_from_full_model_info(...) method of builtins.PyCapsule instance get_res_list_from_full_model_info(pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_unsigned_long get_res_list_from_full_model_info_const(...) method of builtins.PyCapsule instance get_res_list_from_full_model_info_const(pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_unsigned_long get_res_num_from_pdb_info(...) method of builtins.PyCapsule instance get_res_num_from_pdb_info(pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_int get_residue(...) method of builtins.PyCapsule instance get_residue(seqpos_in_full_model : int, pose : rosetta.core.pose.Pose) -> rosetta.core.conformation.Residue get_sample_res_for_pose(...) method of builtins.PyCapsule instance get_sample_res_for_pose(pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_unsigned_long initialize_parameters(...) method of builtins.PyCapsule instance initialize_parameters(full_model_parameters : core::pose::full_model_info::FullModelParameters) -> NoneType make_sure_full_model_info_is_setup(...) method of builtins.PyCapsule instance make_sure_full_model_info_is_setup(pose : rosetta.core.pose.Pose) -> rosetta.core.pose.full_model_info.FullModelInfo nonconst_full_model_info(...) method of builtins.PyCapsule instance nonconst_full_model_info(pose : rosetta.core.pose.Pose) -> rosetta.core.pose.full_model_info.FullModelInfo reorder_full_model_info_after_append(...) method of builtins.PyCapsule instance reorder_full_model_info_after_append(*args, **kwargs) Overloaded function.   1. reorder_full_model_info_after_append(pose : rosetta.core.pose.Pose, res_to_add : int) -> NoneType   2. reorder_full_model_info_after_append(pose : rosetta.core.pose.Pose, res_to_add : int, offset : int) -> NoneType reorder_full_model_info_after_delete(...) method of builtins.PyCapsule instance reorder_full_model_info_after_delete(pose : rosetta.core.pose.Pose, res_to_delete : int) -> NoneType   /////////////////////////////////////////////////////////////////////////////////////////////////      Keep track of RNA centroid information inside the pose. reorder_full_model_info_after_prepend(...) method of builtins.PyCapsule instance reorder_full_model_info_after_prepend(*args, **kwargs) Overloaded function.   1. reorder_full_model_info_after_prepend(pose : rosetta.core.pose.Pose, res_to_add : int) -> NoneType   2. reorder_full_model_info_after_prepend(pose : rosetta.core.pose.Pose, res_to_add : int, offset : int) -> NoneType set_full_model_info(...) method of builtins.PyCapsule instance set_full_model_info(pose : rosetta.core.pose.Pose, full_model_info : rosetta.core.pose.full_model_info.FullModelInfo) -> NoneType sub_to_full(...) method of builtins.PyCapsule instance sub_to_full(*args, **kwargs) Overloaded function.   1. sub_to_full(i : int, pose : rosetta.core.pose.Pose) -> int   2. sub_to_full(res_list : rosetta.utility.vector1_unsigned_long, pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_unsigned_long to_string(...) method of builtins.PyCapsule instance to_string(type : rosetta.core.pose.full_model_info.FullModelParameterType) -> str update_constraint_set_from_full_model_info(...) method of builtins.PyCapsule instance update_constraint_set_from_full_model_info(pose : rosetta.core.pose.Pose) -> NoneType update_disulfides_from_full_model_info(...) method of builtins.PyCapsule instance update_disulfides_from_full_model_info(pose : rosetta.core.pose.Pose) -> NoneType update_full_model_info_from_pose(...) method of builtins.PyCapsule instance update_full_model_info_from_pose(pose : rosetta.core.pose.Pose) -> NoneType update_pdb_info_from_full_model_info(...) method of builtins.PyCapsule instance update_pdb_info_from_full_model_info(pose : rosetta.core.pose.Pose) -> NoneType update_pose_objects_from_full_model_info(...) method of builtins.PyCapsule instance update_pose_objects_from_full_model_info(pose : rosetta.core.pose.Pose) -> NoneType update_res_list_in_full_model_info_and_pdb_info(...) method of builtins.PyCapsule instance update_res_list_in_full_model_info_and_pdb_info(pose : rosetta.core.pose.Pose, res_list_new : rosetta.utility.vector1_unsigned_long) -> NoneType

Data
		CALC_RMS = FullModelParameterType.CALC_RMS CUTPOINT_OPEN = FullModelParameterType.CUTPOINT_OPEN DISULFIDE = FullModelParameterType.DISULFIDE DOCK_DOMAIN = FullModelParameterType.DOCK_DOMAIN EXTRA_MINIMIZE = FullModelParameterType.EXTRA_MINIMIZE EXTRA_MINIMIZE_JUMP = FullModelParameterType.EXTRA_MINIMIZE_JUMP FIXED_DOMAIN = FullModelParameterType.FIXED_DOMAIN INPUT_DOMAIN = FullModelParameterType.INPUT_DOMAIN JUMP = FullModelParameterType.JUMP LAST_TYPE = FullModelParameterType.LAST_TYPE NO_TYPE = FullModelParameterType.NO_TYPE PREFERRED_ROOT = FullModelParameterType.PREFERRED_ROOT RNA_ANTI_CHI = FullModelParameterType.RNA_ANTI_CHI RNA_BLOCK_STACK_ABOVE = FullModelParameterType.RNA_BLOCK_STACK_ABOVE RNA_BLOCK_STACK_BELOW = FullModelParameterType.RNA_BLOCK_STACK_BELOW RNA_BULGE = FullModelParameterType.RNA_BULGE RNA_NORTH_SUGAR = FullModelParameterType.RNA_NORTH_SUGAR RNA_SAMPLE_SUGAR = FullModelParameterType.RNA_SAMPLE_SUGAR RNA_SOUTH_SUGAR = FullModelParameterType.RNA_SOUTH_SUGAR RNA_SYN_CHI = FullModelParameterType.RNA_SYN_CHI RNA_TERMINAL = FullModelParameterType.RNA_TERMINAL SAMPLE = FullModelParameterType.SAMPLE WORKING = FullModelParameterType.WORKING