| | |
- builtins.object
-
- DisulfideFile
- RawFileData
-
- DecoyFileData
- ScoreFileData
- RawStruct
-
- DecoyStruct
- ScoreStructJSON
- ScoreStructText
class DecoyFileData(RawFileData) |
| | |
- Method resolution order:
- DecoyFileData
- RawFileData
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(self : rosetta.core.io.raw_data.DecoyFileData, filename : str) -> NoneType
2. __init__(self : rosetta.core.io.raw_data.DecoyFileData, : rosetta.core.io.raw_data.DecoyFileData) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.io.raw_data.DecoyFileData, : rosetta.core.io.raw_data.DecoyFileData) -> rosetta.core.io.raw_data.DecoyFileData
- write_pose(...) from builtins.PyCapsule
- write_pose(self : rosetta.core.io.raw_data.DecoyFileData, pose : rosetta.core.pose.Pose, score_map : rosetta.std.map_std_string_double, tag : str, fullatom : bool) -> bool
- write_struct(...) from builtins.PyCapsule
- write_struct(self : rosetta.core.io.raw_data.DecoyFileData, s : core::io::raw_data::DecoyStruct, score_map : rosetta.std.map_std_string_double) -> bool
Methods inherited from RawFileData:
- begin(...) from builtins.PyCapsule
- begin(rosetta.core.io.raw_data.RawFileData) -> core::io::raw_data::RawFileData::iterator
Returns an iterator to the start of the members of this container.
- begin_const(...) from builtins.PyCapsule
- begin_const(rosetta.core.io.raw_data.RawFileData) -> core::io::raw_data::RawFileData::const_iterator
- clear_structure_map(...) from builtins.PyCapsule
- clear_structure_map(rosetta.core.io.raw_data.RawFileData) -> NoneType
Remove all of the RawStruct objects from this object.
- end(...) from builtins.PyCapsule
- end(rosetta.core.io.raw_data.RawFileData) -> core::io::raw_data::RawFileData::iterator
Returns an iterator to the end of the members of this container.
- end_const(...) from builtins.PyCapsule
- end_const(rosetta.core.io.raw_data.RawFileData) -> core::io::raw_data::RawFileData::const_iterator
- nres(...) from builtins.PyCapsule
- nres(rosetta.core.io.raw_data.RawFileData) -> int
Returns the number of residues in the first structure in this object. Not
guaranteed to be fixed for all structures in this container.
- read_tags_fast(...) from builtins.PyCapsule
- read_tags_fast(self : rosetta.core.io.raw_data.RawFileData, filename : str) -> rosetta.utility.vector1_std_string
quickly read a list of tags from a silent-input file. Only checks lines beginning
with SCORE: strings.
- sequence(...) from builtins.PyCapsule
- sequence(rosetta.core.io.raw_data.RawFileData) -> str
Returns the sequence of the first structure in this object. Not
guaranteed to be fixed for all structures in this container.
- size(...) from builtins.PyCapsule
- size(rosetta.core.io.raw_data.RawFileData) -> int
Returns the number of structures contained in this container.
- write_all(...) from builtins.PyCapsule
- write_all(self : rosetta.core.io.raw_data.RawFileData, filename : str, score_map : rosetta.std.map_std_string_double) -> NoneType
write all RawStruct objects in the structure_map_ to the given filename.
|
class DecoyStruct(RawStruct) |
| | |
- Method resolution order:
- DecoyStruct
- RawStruct
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(self : handle, nres_in : int) -> NoneType
2. __init__(handle) -> NoneType
3. __init__(handle, rosetta.core.pose.Pose) -> NoneType
doc
4. __init__(handle, rosetta.core.pose.Pose, str) -> NoneType
doc
5. __init__(self : handle, pose : rosetta.core.pose.Pose, tag : str, fa : bool) -> NoneType
6. __init__(handle, rosetta.core.io.raw_data.DecoyStruct) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.io.raw_data.DecoyStruct, : rosetta.core.io.raw_data.DecoyStruct) -> rosetta.core.io.raw_data.DecoyStruct
- chi(...) from builtins.PyCapsule
- chi(*args, **kwargs)
Overloaded function.
1. chi(self : rosetta.core.io.raw_data.DecoyStruct, seqpos : int) -> rosetta.utility.vector1_double
2. chi(self : rosetta.core.io.raw_data.DecoyStruct, seqpos : int, chis : rosetta.utility.vector1_double) -> NoneType
- coords(...) from builtins.PyCapsule
- coords(*args, **kwargs)
Overloaded function.
1. coords(self : rosetta.core.io.raw_data.DecoyStruct, seqpos : int) -> rosetta.numeric.xyzVector_double_t
2. coords(self : rosetta.core.io.raw_data.DecoyStruct, seqpos : int, coords : rosetta.numeric.xyzVector_double_t) -> NoneType
- fill_pose(...) from builtins.PyCapsule
- fill_pose(*args, **kwargs)
Overloaded function.
1. fill_pose(self : rosetta.core.io.raw_data.DecoyStruct, pose : rosetta.core.pose.Pose) -> NoneType
2. fill_pose(self : rosetta.core.io.raw_data.DecoyStruct, pose : rosetta.core.pose.Pose, residue_set : rosetta.core.chemical.ResidueTypeSet) -> NoneType
- fullatom(...) from builtins.PyCapsule
- fullatom(*args, **kwargs)
Overloaded function.
1. fullatom(rosetta.core.io.raw_data.DecoyStruct) -> bool
data getters/setters
2. fullatom(self : rosetta.core.io.raw_data.DecoyStruct, fullatom : bool) -> NoneType
- get_debug_rmsd(...) from builtins.PyCapsule
- get_debug_rmsd(rosetta.core.io.raw_data.DecoyStruct) -> float
calculates the RMSD between the C-alpha atoms of a Pose built from the torsions in this
DecoyStruct and the C-alpha atoms from this DecoyStruct.
- omega(...) from builtins.PyCapsule
- omega(*args, **kwargs)
Overloaded function.
1. omega(self : rosetta.core.io.raw_data.DecoyStruct, seqpos : int) -> float
2. omega(self : rosetta.core.io.raw_data.DecoyStruct, seqpos : int, omega : float) -> NoneType
- phi(...) from builtins.PyCapsule
- phi(*args, **kwargs)
Overloaded function.
1. phi(self : rosetta.core.io.raw_data.DecoyStruct, seqpos : int) -> float
2. phi(self : rosetta.core.io.raw_data.DecoyStruct, seqpos : int, phi : float) -> NoneType
- psi(...) from builtins.PyCapsule
- psi(*args, **kwargs)
Overloaded function.
1. psi(self : rosetta.core.io.raw_data.DecoyStruct, seqpos : int) -> float
2. psi(self : rosetta.core.io.raw_data.DecoyStruct, seqpos : int, psi : float) -> NoneType
- resize(...) from builtins.PyCapsule
- resize(self : rosetta.core.io.raw_data.DecoyStruct, nres_in : int) -> NoneType
- secstruct(...) from builtins.PyCapsule
- secstruct(*args, **kwargs)
Overloaded function.
1. secstruct(self : rosetta.core.io.raw_data.DecoyStruct, seqpos : int) -> str
2. secstruct(self : rosetta.core.io.raw_data.DecoyStruct, seqpos : int, ss : str) -> NoneType
Methods inherited from RawStruct:
- decoy_tag(...) from builtins.PyCapsule
- decoy_tag(*args, **kwargs)
Overloaded function.
1. decoy_tag(rosetta.core.io.raw_data.RawStruct) -> str
returns the tag associated with this RawStruct
2. decoy_tag(self : rosetta.core.io.raw_data.RawStruct, tag : str) -> NoneType
sets the tag associated with this RawStruct
- nres(...) from builtins.PyCapsule
- nres(*args, **kwargs)
Overloaded function.
1. nres(rosetta.core.io.raw_data.RawStruct) -> int
data access methods.
2. nres(self : rosetta.core.io.raw_data.RawStruct, nres : int) -> NoneType
returns the number of residues in this RawStruct
- sequence(...) from builtins.PyCapsule
- sequence(*args, **kwargs)
Overloaded function.
1. sequence(rosetta.core.io.raw_data.RawStruct) -> str
returns the sequence for this RawStruct
2. sequence(self : rosetta.core.io.raw_data.RawStruct, sequence : str) -> NoneType
sets the sequence for this RawStruct
|
class DisulfideFile(builtins.object) |
| |
Parses and stores a disulfide file.
Initiallizing a DisulfideFile is a lightweight operation.
The heavy lifting occurs the first time disulfides() is called. This parses
the file and caches the resulting pairs of residues.
Subsequent calls to disulfides() are fast since they don't reparse the file
but merely reinterpret the results in terms of the specified.
The disulfide file format is pretty flexible. It looks for three kinds of lines:
- '12 42' Lines with two integers are interpreted as a disulfide
bond, indexed by internal rosetta residue number, i.e. the 12th and 42nd
residues from the start of the pose.
- '12A 42A' If a single character is appended to the numbers, DisulfideFile
assumes that these refer to the pdb number and chain, i.e. the residues
of chain A numbered 12 and 42 in the pdb.
- 'SSBOND 1 CYS A 12 CYS A 42' The
PDB format for disulfide bond annotations.
All lines not matching these criteria are silently ignored. This implies
that whole pdb files can usually be used unaltered as disulfide files, since
the SSBOND entries are extracted and all else is ignored.
Question from rhiju, 2014 -- I don't see handling of '12A' or SSBOND cases in
DisulfideFile.cc -- is someone going to check that in?
|
| |
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(self : rosetta.core.io.raw_data.DisulfideFile, filename : str) -> NoneType
2. __init__(self : rosetta.core.io.raw_data.DisulfideFile, : rosetta.core.io.raw_data.DisulfideFile) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- disulfides(...) from builtins.PyCapsule
- disulfides(*args, **kwargs)
Overloaded function.
1. disulfides(self : rosetta.core.io.raw_data.DisulfideFile, disulfides : rosetta.utility.vector1_std_pair_unsigned_long_unsigned_long_t) -> NoneType
Get a list of disulfide bonds declared in the file
2. disulfides(self : rosetta.core.io.raw_data.DisulfideFile, disulfides : rosetta.utility.vector1_std_pair_unsigned_long_unsigned_long_t, pose : rosetta.core.pose.Pose) -> NoneType
Get a list of disulfide bonds declared in the file
(renumbered to rosetta numbering if necessary)
- filename(...) from builtins.PyCapsule
- filename(rosetta.core.io.raw_data.DisulfideFile) -> str
Accessor for the filename
- read_in_and_set_disulfides(...) from builtins.PyCapsule
- read_in_and_set_disulfides(self : rosetta.core.io.raw_data.DisulfideFile, pose : rosetta.core.pose.Pose) -> NoneType
Get a list of disulfide bonds declared in the file
(renumbered to rosetta numbering if necessary)
also manually set the disulfides in the conformation of the provided pose
(this is a necessary workaround for dealing with multiple disulfide specification
files in PyRosetta
|
class RawFileData(builtins.object) |
| |
Abstract base class for classes that writes different types of
silent-files that contain a mixture of Struct objects which are expected
to be uniquely identified by some sort of string-based tag.
|
| |
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(rosetta.core.io.raw_data.RawFileData) -> NoneType
2. __init__(self : rosetta.core.io.raw_data.RawFileData, : rosetta.core.io.raw_data.RawFileData) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.io.raw_data.RawFileData, : rosetta.core.io.raw_data.RawFileData) -> rosetta.core.io.raw_data.RawFileData
- begin(...) from builtins.PyCapsule
- begin(rosetta.core.io.raw_data.RawFileData) -> core::io::raw_data::RawFileData::iterator
Returns an iterator to the start of the members of this container.
- begin_const(...) from builtins.PyCapsule
- begin_const(rosetta.core.io.raw_data.RawFileData) -> core::io::raw_data::RawFileData::const_iterator
- clear_structure_map(...) from builtins.PyCapsule
- clear_structure_map(rosetta.core.io.raw_data.RawFileData) -> NoneType
Remove all of the RawStruct objects from this object.
- end(...) from builtins.PyCapsule
- end(rosetta.core.io.raw_data.RawFileData) -> core::io::raw_data::RawFileData::iterator
Returns an iterator to the end of the members of this container.
- end_const(...) from builtins.PyCapsule
- end_const(rosetta.core.io.raw_data.RawFileData) -> core::io::raw_data::RawFileData::const_iterator
- nres(...) from builtins.PyCapsule
- nres(rosetta.core.io.raw_data.RawFileData) -> int
Returns the number of residues in the first structure in this object. Not
guaranteed to be fixed for all structures in this container.
- read_tags_fast(...) from builtins.PyCapsule
- read_tags_fast(self : rosetta.core.io.raw_data.RawFileData, filename : str) -> rosetta.utility.vector1_std_string
quickly read a list of tags from a silent-input file. Only checks lines beginning
with SCORE: strings.
- sequence(...) from builtins.PyCapsule
- sequence(rosetta.core.io.raw_data.RawFileData) -> str
Returns the sequence of the first structure in this object. Not
guaranteed to be fixed for all structures in this container.
- size(...) from builtins.PyCapsule
- size(rosetta.core.io.raw_data.RawFileData) -> int
Returns the number of structures contained in this container.
- write_all(...) from builtins.PyCapsule
- write_all(self : rosetta.core.io.raw_data.RawFileData, filename : str, score_map : rosetta.std.map_std_string_double) -> NoneType
write all RawStruct objects in the structure_map_ to the given filename.
|
class RawStruct(builtins.object) |
| |
//////////////////////////////////////////////////////////////////////////
|
| |
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(rosetta.core.io.raw_data.RawStruct, rosetta.core.io.raw_data.RawStruct) -> NoneType
2. __init__(rosetta.core.io.raw_data.RawStruct) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.io.raw_data.RawStruct, : rosetta.core.io.raw_data.RawStruct) -> rosetta.core.io.raw_data.RawStruct
- decoy_tag(...) from builtins.PyCapsule
- decoy_tag(*args, **kwargs)
Overloaded function.
1. decoy_tag(rosetta.core.io.raw_data.RawStruct) -> str
returns the tag associated with this RawStruct
2. decoy_tag(self : rosetta.core.io.raw_data.RawStruct, tag : str) -> NoneType
sets the tag associated with this RawStruct
- fill_pose(...) from builtins.PyCapsule
- fill_pose(*args, **kwargs)
Overloaded function.
1. fill_pose(self : rosetta.core.io.raw_data.RawStruct, pose : rosetta.core.pose.Pose) -> NoneType
Fill a Pose with the conformation information in this RawStruct and the FA_STANDARD
ResidueTypeSet. This is a virtual method which must be implemented by classes derived from RawStruct.
2. fill_pose(self : rosetta.core.io.raw_data.RawStruct, pose : rosetta.core.pose.Pose, residue_set : rosetta.core.chemical.ResidueTypeSet) -> NoneType
Fill a Pose with the conformation information in this RawStruct and the ResidueTypeSet
provided by the caller. This is a virtual method which must be implemented by classes derived from RawStruct.
- get_debug_rmsd(...) from builtins.PyCapsule
- get_debug_rmsd(rosetta.core.io.raw_data.RawStruct) -> float
Do some sort of comparison between the actual RMSD of this silent-struct and
the cached coordinates. Used for RawStruct objects that are rebuild from torsions
or other shortened representations of data.
- nres(...) from builtins.PyCapsule
- nres(*args, **kwargs)
Overloaded function.
1. nres(rosetta.core.io.raw_data.RawStruct) -> int
data access methods.
2. nres(self : rosetta.core.io.raw_data.RawStruct, nres : int) -> NoneType
returns the number of residues in this RawStruct
- sequence(...) from builtins.PyCapsule
- sequence(*args, **kwargs)
Overloaded function.
1. sequence(rosetta.core.io.raw_data.RawStruct) -> str
returns the sequence for this RawStruct
2. sequence(self : rosetta.core.io.raw_data.RawStruct, sequence : str) -> NoneType
sets the sequence for this RawStruct
|
class ScoreFileData(RawFileData) |
| | |
- Method resolution order:
- ScoreFileData
- RawFileData
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(self : rosetta.core.io.raw_data.ScoreFileData, filename : str) -> NoneType
2. __init__(self : rosetta.core.io.raw_data.ScoreFileData, : rosetta.core.io.raw_data.ScoreFileData) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.io.raw_data.ScoreFileData, : rosetta.core.io.raw_data.ScoreFileData) -> rosetta.core.io.raw_data.ScoreFileData
- write_pose(...) from builtins.PyCapsule
- write_pose(*args, **kwargs)
Overloaded function.
1. write_pose(self : rosetta.core.io.raw_data.ScoreFileData, pose : rosetta.core.pose.Pose, score_map : rosetta.std.map_std_string_double, tag : str) -> bool
2. write_pose(self : rosetta.core.io.raw_data.ScoreFileData, pose : rosetta.core.pose.Pose, score_map : rosetta.std.map_std_string_double, tag : str, string_map : rosetta.std.map_std_string_std_string) -> bool
- write_struct(...) from builtins.PyCapsule
- write_struct(*args, **kwargs)
Overloaded function.
1. write_struct(self : rosetta.core.io.raw_data.ScoreFileData, s : rosetta.core.io.raw_data.RawStruct, score_map : rosetta.std.map_std_string_double) -> bool
2. write_struct(self : rosetta.core.io.raw_data.ScoreFileData, s : rosetta.core.io.raw_data.RawStruct, score_map : rosetta.std.map_std_string_double, string_map : rosetta.std.map_std_string_std_string) -> bool
Methods inherited from RawFileData:
- begin(...) from builtins.PyCapsule
- begin(rosetta.core.io.raw_data.RawFileData) -> core::io::raw_data::RawFileData::iterator
Returns an iterator to the start of the members of this container.
- begin_const(...) from builtins.PyCapsule
- begin_const(rosetta.core.io.raw_data.RawFileData) -> core::io::raw_data::RawFileData::const_iterator
- clear_structure_map(...) from builtins.PyCapsule
- clear_structure_map(rosetta.core.io.raw_data.RawFileData) -> NoneType
Remove all of the RawStruct objects from this object.
- end(...) from builtins.PyCapsule
- end(rosetta.core.io.raw_data.RawFileData) -> core::io::raw_data::RawFileData::iterator
Returns an iterator to the end of the members of this container.
- end_const(...) from builtins.PyCapsule
- end_const(rosetta.core.io.raw_data.RawFileData) -> core::io::raw_data::RawFileData::const_iterator
- nres(...) from builtins.PyCapsule
- nres(rosetta.core.io.raw_data.RawFileData) -> int
Returns the number of residues in the first structure in this object. Not
guaranteed to be fixed for all structures in this container.
- read_tags_fast(...) from builtins.PyCapsule
- read_tags_fast(self : rosetta.core.io.raw_data.RawFileData, filename : str) -> rosetta.utility.vector1_std_string
quickly read a list of tags from a silent-input file. Only checks lines beginning
with SCORE: strings.
- sequence(...) from builtins.PyCapsule
- sequence(rosetta.core.io.raw_data.RawFileData) -> str
Returns the sequence of the first structure in this object. Not
guaranteed to be fixed for all structures in this container.
- size(...) from builtins.PyCapsule
- size(rosetta.core.io.raw_data.RawFileData) -> int
Returns the number of structures contained in this container.
- write_all(...) from builtins.PyCapsule
- write_all(self : rosetta.core.io.raw_data.RawFileData, filename : str, score_map : rosetta.std.map_std_string_double) -> NoneType
write all RawStruct objects in the structure_map_ to the given filename.
|
class ScoreStructJSON(RawStruct) |
| | |
- Method resolution order:
- ScoreStructJSON
- RawStruct
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(self : handle, : rosetta.core.pose.Pose, tag : str) -> NoneType
2. __init__(handle, rosetta.core.io.raw_data.ScoreStructJSON) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.io.raw_data.ScoreStructJSON, : rosetta.core.io.raw_data.ScoreStructJSON) -> rosetta.core.io.raw_data.ScoreStructJSON
- fill_pose(...) from builtins.PyCapsule
- fill_pose(*args, **kwargs)
Overloaded function.
1. fill_pose(self : rosetta.core.io.raw_data.ScoreStructJSON, : rosetta.core.pose.Pose) -> NoneType
2. fill_pose(self : rosetta.core.io.raw_data.ScoreStructJSON, : rosetta.core.pose.Pose, : rosetta.core.chemical.ResidueTypeSet) -> NoneType
- get_debug_rmsd(...) from builtins.PyCapsule
- get_debug_rmsd(rosetta.core.io.raw_data.ScoreStructJSON) -> float
Methods inherited from RawStruct:
- decoy_tag(...) from builtins.PyCapsule
- decoy_tag(*args, **kwargs)
Overloaded function.
1. decoy_tag(rosetta.core.io.raw_data.RawStruct) -> str
returns the tag associated with this RawStruct
2. decoy_tag(self : rosetta.core.io.raw_data.RawStruct, tag : str) -> NoneType
sets the tag associated with this RawStruct
- nres(...) from builtins.PyCapsule
- nres(*args, **kwargs)
Overloaded function.
1. nres(rosetta.core.io.raw_data.RawStruct) -> int
data access methods.
2. nres(self : rosetta.core.io.raw_data.RawStruct, nres : int) -> NoneType
returns the number of residues in this RawStruct
- sequence(...) from builtins.PyCapsule
- sequence(*args, **kwargs)
Overloaded function.
1. sequence(rosetta.core.io.raw_data.RawStruct) -> str
returns the sequence for this RawStruct
2. sequence(self : rosetta.core.io.raw_data.RawStruct, sequence : str) -> NoneType
sets the sequence for this RawStruct
|
class ScoreStructText(RawStruct) |
| |
//////////////////////////////////////////////////////////////////////////
|
| |
- Method resolution order:
- ScoreStructText
- RawStruct
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle) -> NoneType
2. __init__(handle, rosetta.core.pose.Pose) -> NoneType
doc
3. __init__(self : handle, : rosetta.core.pose.Pose, tag : str) -> NoneType
4. __init__(handle, rosetta.core.io.raw_data.ScoreStructText) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.io.raw_data.ScoreStructText, : rosetta.core.io.raw_data.ScoreStructText) -> rosetta.core.io.raw_data.ScoreStructText
- fill_pose(...) from builtins.PyCapsule
- fill_pose(*args, **kwargs)
Overloaded function.
1. fill_pose(self : rosetta.core.io.raw_data.ScoreStructText, : rosetta.core.pose.Pose) -> NoneType
Fill a Pose with the conformation information in this RawStruct and the FA_STANDARD
ResidueTypeSet. This is a virtual method which must be implemented by classes derived from RawStruct.
2. fill_pose(self : rosetta.core.io.raw_data.ScoreStructText, : rosetta.core.pose.Pose, residue_set : rosetta.core.chemical.ResidueTypeSet) -> NoneType
Fill a Pose with the conformation information in this RawStruct and the ResidueTypeSet
provided by the caller. This is a virtual method which must be implemented by classes derived from RawStruct.
- get_debug_rmsd(...) from builtins.PyCapsule
- get_debug_rmsd(rosetta.core.io.raw_data.ScoreStructText) -> float
Methods inherited from RawStruct:
- decoy_tag(...) from builtins.PyCapsule
- decoy_tag(*args, **kwargs)
Overloaded function.
1. decoy_tag(rosetta.core.io.raw_data.RawStruct) -> str
returns the tag associated with this RawStruct
2. decoy_tag(self : rosetta.core.io.raw_data.RawStruct, tag : str) -> NoneType
sets the tag associated with this RawStruct
- nres(...) from builtins.PyCapsule
- nres(*args, **kwargs)
Overloaded function.
1. nres(rosetta.core.io.raw_data.RawStruct) -> int
data access methods.
2. nres(self : rosetta.core.io.raw_data.RawStruct, nres : int) -> NoneType
returns the number of residues in this RawStruct
- sequence(...) from builtins.PyCapsule
- sequence(*args, **kwargs)
Overloaded function.
1. sequence(rosetta.core.io.raw_data.RawStruct) -> str
returns the sequence for this RawStruct
2. sequence(self : rosetta.core.io.raw_data.RawStruct, sequence : str) -> NoneType
sets the sequence for this RawStruct
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