Bindings for core::io::external namespace

Classes
		builtins.object PsiPredInterface PsiPredResult   class PsiPredInterface(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : rosetta.core.io.external.PsiPredInterface, cmd : str) -> NoneType   2. __init__(self : rosetta.core.io.external.PsiPredInterface, rval : rosetta.core.io.external.PsiPredInterface) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. run_psipred(...) from builtins.PyCapsule run_psipred(self : rosetta.core.io.external.PsiPredInterface, pose : rosetta.core.pose.Pose, blueprint_ss : str) -> rosetta.core.io.external.PsiPredResult   Runs psipred, as specified by "cmd" on the fasta file "fasta_filename", and returns the psipred filename  if cached psipred output has already been saved for the AA sequence of pose, the cached output will be returned.   class PsiPredResult(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.io.external.PsiPredResult) -> NoneType   2. __init__(self : rosetta.core.io.external.PsiPredResult,  : rosetta.core.io.external.PsiPredResult) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.io.external.PsiPredResult,  : rosetta.core.io.external.PsiPredResult) -> rosetta.core.io.external.PsiPredResult Data descriptors defined here: nres pred_ss psipred2_confidence psipred_prob

Functions
		generate_prob(...) method of builtins.PyCapsule instance generate_prob(psipred_result : rosetta.core.io.external.PsiPredResult, desired_ss : str) -> rosetta.utility.vector1_double   generates scores for each residue based on psipred confidence and the desired secondary structure nonmatching_residues(...) method of builtins.PyCapsule instance nonmatching_residues(blueprint_ss : str, pred_ss : str) -> rosetta.utility.vector1_unsigned_long   finds which positions in the blueprint and predicted secondary structure string don't match  returns a vector of the residue numbers