Bindings for core::indexed_structure_store namespace

Classes
		builtins.object BinaryFragmentStoreBackend FragmentLookup FragmentLookupResult FragmentSpecification FragmentStore rosetta.utility.SingletonBase_core_indexed_structure_store_ABEGOHashedFragmentStore_t(builtins.object) ABEGOHashedFragmentStore rosetta.utility.SingletonBase_core_indexed_structure_store_StructureStoreManager_t(builtins.object) StructureStoreManager   class ABEGOHashedFragmentStore(rosetta.utility.SingletonBase_core_indexed_structure_store_ABEGOHashedFragmentStore_t)       Method resolution order: ABEGOHashedFragmentStore rosetta.utility.SingletonBase_core_indexed_structure_store_ABEGOHashedFragmentStore_t builtins.object Methods defined here: __init__(self, /, *args, **kwargs) Initialize self.  See help(type(self)) for accurate signature. __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. generate_ss_stub_to_abego(...) from builtins.PyCapsule generate_ss_stub_to_abego(rosetta.core.indexed_structure_store.ABEGOHashedFragmentStore) -> NoneType get_N_fragments(...) from builtins.PyCapsule get_N_fragments(self : rosetta.core.indexed_structure_store.ABEGOHashedFragmentStore, abego_string : str, topNFrags : int) -> rosetta.std.vector_core_indexed_structure_store_FragmentLookupResult get_abego_string(...) from builtins.PyCapsule get_abego_string(self : rosetta.core.indexed_structure_store.ABEGOHashedFragmentStore, pose : rosetta.core.pose.Pose, resid : int) -> str get_fragment_coordinates(...) from builtins.PyCapsule get_fragment_coordinates(self : rosetta.core.indexed_structure_store.ABEGOHashedFragmentStore, match_abego : int, match_index : int) -> rosetta.std.vector_numeric_xyzVector_double_t get_fragment_length(...) from builtins.PyCapsule get_fragment_length(rosetta.core.indexed_structure_store.ABEGOHashedFragmentStore) -> int get_fragment_store(...) from builtins.PyCapsule get_fragment_store(*args, **kwargs) Overloaded function.   1. get_fragment_store(self : rosetta.core.indexed_structure_store.ABEGOHashedFragmentStore, fragment_abego : str) -> rosetta.core.indexed_structure_store.FragmentStore   2. get_fragment_store(self : rosetta.core.indexed_structure_store.ABEGOHashedFragmentStore, base5index : int) -> rosetta.core.indexed_structure_store.FragmentStore   3. get_fragment_store(rosetta.core.indexed_structure_store.ABEGOHashedFragmentStore) -> rosetta.core.indexed_structure_store.FragmentStore get_fragments_below_rms(...) from builtins.PyCapsule get_fragments_below_rms(*args, **kwargs) Overloaded function.   1. get_fragments_below_rms(self : rosetta.core.indexed_structure_store.ABEGOHashedFragmentStore, pose : rosetta.core.pose.Pose, resid : int, rms_threshold : float) -> rosetta.std.vector_core_indexed_structure_store_FragmentLookupResult   2. get_fragments_below_rms(self : rosetta.core.indexed_structure_store.ABEGOHashedFragmentStore, pose : rosetta.core.pose.Pose, resid : int, rms_threshold : float, fragAbegoStr : str) -> rosetta.std.vector_core_indexed_structure_store_FragmentLookupResult get_topN_fragments(...) from builtins.PyCapsule get_topN_fragments(self : rosetta.core.indexed_structure_store.ABEGOHashedFragmentStore, selectionType : str, topNFrags : int, pose : rosetta.core.pose.Pose, resid : int, rms_threshold : float, fragAbegoStr : str) -> rosetta.std.vector_core_indexed_structure_store_FragmentLookupResult lookback(...) from builtins.PyCapsule lookback(*args, **kwargs) Overloaded function.   1. lookback(self : rosetta.core.indexed_structure_store.ABEGOHashedFragmentStore, pose : rosetta.core.pose.Pose, resid : int) -> float   2. lookback(self : rosetta.core.indexed_structure_store.ABEGOHashedFragmentStore, pose : rosetta.core.pose.Pose, resid : int, fragAbegoStr : str) -> float lookback_stub(...) from builtins.PyCapsule lookback_stub(self : rosetta.core.indexed_structure_store.ABEGOHashedFragmentStore, coordinates : rosetta.std.vector_numeric_xyzVector_double_t, stub_ss : str, match_rmsd : float, match_index : int, match_abego : int) -> NoneType lookback_uncached_stub(...) from builtins.PyCapsule lookback_uncached_stub(self : rosetta.core.indexed_structure_store.ABEGOHashedFragmentStore, coordinates : rosetta.std.vector_numeric_xyzVector_double_t, short_stub_ss : str, full_stub_ss : str, match_rmsd : float, match_index : int, match_abego : int) -> NoneType lookback_xyz(...) from builtins.PyCapsule lookback_xyz(self : rosetta.core.indexed_structure_store.ABEGOHashedFragmentStore, pose : rosetta.core.pose.Pose, resid : int) -> rosetta.std.vector_numeric_xyzVector_double_t set_threshold_distance(...) from builtins.PyCapsule set_threshold_distance(self : rosetta.core.indexed_structure_store.ABEGOHashedFragmentStore, threshold_distance : float) -> NoneType Methods inherited from rosetta.utility.SingletonBase_core_indexed_structure_store_ABEGOHashedFragmentStore_t: get_instance(...) from builtins.PyCapsule get_instance() -> core::indexed_structure_store::ABEGOHashedFragmentStore   class BinaryFragmentStoreBackend(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : rosetta.core.indexed_structure_store.BinaryFragmentStoreBackend, target_path : str) -> NoneType   2. __init__(self : rosetta.core.indexed_structure_store.BinaryFragmentStoreBackend,  : rosetta.core.indexed_structure_store.BinaryFragmentStoreBackend) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.indexed_structure_store.BinaryFragmentStoreBackend,  : rosetta.core.indexed_structure_store.BinaryFragmentStoreBackend) -> rosetta.core.indexed_structure_store.BinaryFragmentStoreBackend get_fragment_store(...) from builtins.PyCapsule get_fragment_store(self : rosetta.core.indexed_structure_store.BinaryFragmentStoreBackend, store_name : str) -> rosetta.core.indexed_structure_store.FragmentStore   class FragmentLookup(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(self : rosetta.core.indexed_structure_store.FragmentLookup, store : rosetta.core.indexed_structure_store.FragmentStore) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.indexed_structure_store.FragmentLookup,  : rosetta.core.indexed_structure_store.FragmentLookup) -> rosetta.core.indexed_structure_store.FragmentLookup fragment_specification(...) from builtins.PyCapsule fragment_specification(rosetta.core.indexed_structure_store.FragmentLookup) -> rosetta.core.indexed_structure_store.FragmentSpecification store(...) from builtins.PyCapsule store(rosetta.core.indexed_structure_store.FragmentLookup) -> rosetta.core.indexed_structure_store.FragmentStore   class FragmentLookupResult(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.indexed_structure_store.FragmentLookupResult) -> NoneType   2. __init__(self : rosetta.core.indexed_structure_store.FragmentLookupResult,  : rosetta.core.indexed_structure_store.FragmentLookupResult) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. Data descriptors defined here: found_match match_index match_rmsd match_rmsd_threshold match_score   class FragmentSpecification(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.indexed_structure_store.FragmentSpecification) -> NoneType   2. __init__(self : rosetta.core.indexed_structure_store.FragmentSpecification, fragment_length : int, fragment_atoms : rosetta.std.vector_std_string) -> NoneType   3. __init__(self : rosetta.core.indexed_structure_store.FragmentSpecification,  : rosetta.core.indexed_structure_store.FragmentSpecification) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. __str__(...) from builtins.PyCapsule __str__(rosetta.core.indexed_structure_store.FragmentSpecification) -> str assign(...) from builtins.PyCapsule assign(self : rosetta.core.indexed_structure_store.FragmentSpecification,  : rosetta.core.indexed_structure_store.FragmentSpecification) -> rosetta.core.indexed_structure_store.FragmentSpecification coordinates_per_fragment(...) from builtins.PyCapsule coordinates_per_fragment(rosetta.core.indexed_structure_store.FragmentSpecification) -> int Data descriptors defined here: fragment_atoms fragment_length   class FragmentStore(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.indexed_structure_store.FragmentStore, rosetta.core.indexed_structure_store.FragmentSpecification) -> NoneType   doc   2. __init__(self : rosetta.core.indexed_structure_store.FragmentStore, fragment_specification : rosetta.core.indexed_structure_store.FragmentSpecification, num_fragments : int) -> NoneType   3. __init__(self : rosetta.core.indexed_structure_store.FragmentStore,  : rosetta.core.indexed_structure_store.FragmentStore) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. add_threshold_distance_allFrag(...) from builtins.PyCapsule add_threshold_distance_allFrag(self : rosetta.core.indexed_structure_store.FragmentStore, distance : float) -> NoneType assign(...) from builtins.PyCapsule assign(self : rosetta.core.indexed_structure_store.FragmentStore,  : rosetta.core.indexed_structure_store.FragmentStore) -> rosetta.core.indexed_structure_store.FragmentStore generate_subset_fragment_store(...) from builtins.PyCapsule generate_subset_fragment_store(self : rosetta.core.indexed_structure_store.FragmentStore, residues : rosetta.std.vector_unsigned_long, name : str) -> NoneType get_fragmentLookup(...) from builtins.PyCapsule get_fragmentLookup(rosetta.core.indexed_structure_store.FragmentStore) -> core::indexed_structure_store::FragmentLookup get_fragment_coordinates(...) from builtins.PyCapsule get_fragment_coordinates(self : rosetta.core.indexed_structure_store.FragmentStore, position : int) -> rosetta.std.vector_numeric_xyzVector_double_t get_self_ptr(...) from builtins.PyCapsule get_self_ptr(rosetta.core.indexed_structure_store.FragmentStore) -> rosetta.core.indexed_structure_store.FragmentStore   self pointer resize(...) from builtins.PyCapsule resize(self : rosetta.core.indexed_structure_store.FragmentStore, num_fragments : int) -> NoneType Data descriptors defined here: fragmentStore_groups fragment_coordinates fragment_specification fragment_threshold_distances int64_groups num_fragments_ realVector_groups real_groups string_groups   class StructureStoreManager(rosetta.utility.SingletonBase_core_indexed_structure_store_StructureStoreManager_t)       Method resolution order: StructureStoreManager rosetta.utility.SingletonBase_core_indexed_structure_store_StructureStoreManager_t builtins.object Methods defined here: __init__(self, /, *args, **kwargs) Initialize self.  See help(type(self)) for accurate signature. __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. load_fragment_lookup(...) from builtins.PyCapsule load_fragment_lookup(*args, **kwargs) Overloaded function.   1. load_fragment_lookup(self : rosetta.core.indexed_structure_store.StructureStoreManager, lookup_name : str) -> rosetta.core.indexed_structure_store.FragmentLookup   2. load_fragment_lookup(self : rosetta.core.indexed_structure_store.StructureStoreManager, lookup_name : str, store_path : str) -> rosetta.core.indexed_structure_store.FragmentLookup load_fragment_store(...) from builtins.PyCapsule load_fragment_store(self : rosetta.core.indexed_structure_store.StructureStoreManager, lookup_name : str, store_path : str, fields_to_load : rosetta.utility.vector1_std_string, fields_to_load_types : rosetta.utility.vector1_std_string) -> rosetta.core.indexed_structure_store.FragmentStore load_grouped_fragment_store(...) from builtins.PyCapsule load_grouped_fragment_store(self : rosetta.core.indexed_structure_store.StructureStoreManager, group_field : str, lookup_name : str, store_path : str, fields_to_load : rosetta.utility.vector1_std_string, fields_to_load_types : rosetta.utility.vector1_std_string) -> rosetta.std.map_unsigned_long_std_shared_ptr_core_indexed_structure_store_FragmentStore_t resolve_store_path(...) from builtins.PyCapsule resolve_store_path(self : rosetta.core.indexed_structure_store.StructureStoreManager, store_path : str) -> str Methods inherited from rosetta.utility.SingletonBase_core_indexed_structure_store_StructureStoreManager_t: get_instance(...) from builtins.PyCapsule get_instance() -> core::indexed_structure_store::StructureStoreManager