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- builtins.object
-
- PoseInputStream
-
- ExtendedPoseInputStream
- LazySilentFilePoseInputStream
- MetaPoseInputStream
- PDBPoseInputStream
- SilentFilePoseInputStream
class ExtendedPoseInputStream(PoseInputStream) |
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- Method resolution order:
- ExtendedPoseInputStream
- PoseInputStream
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(self : handle, sequence : str, ntimes : int) -> NoneType
2. __init__(handle, rosetta.core.import_pose.pose_stream.ExtendedPoseInputStream) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.import_pose.pose_stream.ExtendedPoseInputStream, : rosetta.core.import_pose.pose_stream.ExtendedPoseInputStream) -> rosetta.core.import_pose.pose_stream.ExtendedPoseInputStream
- fill_pose(...) from builtins.PyCapsule
- fill_pose(*args, **kwargs)
Overloaded function.
1. fill_pose(self : rosetta.core.import_pose.pose_stream.ExtendedPoseInputStream, pose : rosetta.core.pose.Pose, residue_set : rosetta.core.chemical.ResidueTypeSet) -> NoneType
2. fill_pose(self : rosetta.core.import_pose.pose_stream.ExtendedPoseInputStream, : rosetta.core.pose.Pose) -> NoneType
- has_another_pose(...) from builtins.PyCapsule
- has_another_pose(rosetta.core.import_pose.pose_stream.ExtendedPoseInputStream) -> bool
- reset(...) from builtins.PyCapsule
- reset(rosetta.core.import_pose.pose_stream.ExtendedPoseInputStream) -> NoneType
Methods inherited from PoseInputStream:
- get_all_poses(...) from builtins.PyCapsule
- get_all_poses(self : rosetta.core.import_pose.pose_stream.PoseInputStream, residue_set : rosetta.core.chemical.ResidueTypeSet) -> rosetta.utility.vector1_std_shared_ptr_core_pose_Pose_t
- preprocess_pose(...) from builtins.PyCapsule
- preprocess_pose(self : rosetta.core.import_pose.pose_stream.PoseInputStream, pose : rosetta.core.pose.Pose) -> NoneType
Perform common operations on a Pose dependent on command-line
options before finishing fill_pose. This includes optimizing hydrogens,
adding constraints, and finding disulfides. This should be called in the
fill_pose method of derived classes.
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class LazySilentFilePoseInputStream(PoseInputStream) |
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- Method resolution order:
- LazySilentFilePoseInputStream
- PoseInputStream
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(self : handle, fns : rosetta.utility.vector1_utility_file_FileName) -> NoneType
2. __init__(handle) -> NoneType
3. __init__(handle, rosetta.core.import_pose.pose_stream.LazySilentFilePoseInputStream) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.import_pose.pose_stream.LazySilentFilePoseInputStream, : rosetta.core.import_pose.pose_stream.LazySilentFilePoseInputStream) -> rosetta.core.import_pose.pose_stream.LazySilentFilePoseInputStream
- filenames(...) from builtins.PyCapsule
- filenames(rosetta.core.import_pose.pose_stream.LazySilentFilePoseInputStream) -> rosetta.utility.vector1_utility_file_FileName
- fill_pose(...) from builtins.PyCapsule
- fill_pose(*args, **kwargs)
Overloaded function.
1. fill_pose(self : rosetta.core.import_pose.pose_stream.LazySilentFilePoseInputStream, pose : rosetta.core.pose.Pose, residue_set : rosetta.core.chemical.ResidueTypeSet) -> NoneType
2. fill_pose(self : rosetta.core.import_pose.pose_stream.LazySilentFilePoseInputStream, : rosetta.core.pose.Pose) -> NoneType
- has_another_pose(...) from builtins.PyCapsule
- has_another_pose(rosetta.core.import_pose.pose_stream.LazySilentFilePoseInputStream) -> bool
- reset(...) from builtins.PyCapsule
- reset(rosetta.core.import_pose.pose_stream.LazySilentFilePoseInputStream) -> NoneType
Methods inherited from PoseInputStream:
- get_all_poses(...) from builtins.PyCapsule
- get_all_poses(self : rosetta.core.import_pose.pose_stream.PoseInputStream, residue_set : rosetta.core.chemical.ResidueTypeSet) -> rosetta.utility.vector1_std_shared_ptr_core_pose_Pose_t
- preprocess_pose(...) from builtins.PyCapsule
- preprocess_pose(self : rosetta.core.import_pose.pose_stream.PoseInputStream, pose : rosetta.core.pose.Pose) -> NoneType
Perform common operations on a Pose dependent on command-line
options before finishing fill_pose. This includes optimizing hydrogens,
adding constraints, and finding disulfides. This should be called in the
fill_pose method of derived classes.
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class MetaPoseInputStream(PoseInputStream) |
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- Method resolution order:
- MetaPoseInputStream
- PoseInputStream
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle) -> NoneType
2. __init__(handle, rosetta.core.import_pose.pose_stream.MetaPoseInputStream) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- add_pose_input_stream(...) from builtins.PyCapsule
- add_pose_input_stream(self : rosetta.core.import_pose.pose_stream.MetaPoseInputStream, input : rosetta.core.import_pose.pose_stream.PoseInputStream) -> NoneType
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.import_pose.pose_stream.MetaPoseInputStream, : rosetta.core.import_pose.pose_stream.MetaPoseInputStream) -> rosetta.core.import_pose.pose_stream.MetaPoseInputStream
- fill_pose(...) from builtins.PyCapsule
- fill_pose(*args, **kwargs)
Overloaded function.
1. fill_pose(self : rosetta.core.import_pose.pose_stream.MetaPoseInputStream, pose : rosetta.core.pose.Pose, residue_set : rosetta.core.chemical.ResidueTypeSet) -> NoneType
2. fill_pose(self : rosetta.core.import_pose.pose_stream.MetaPoseInputStream, : rosetta.core.pose.Pose) -> NoneType
- get_input_streams(...) from builtins.PyCapsule
- get_input_streams(rosetta.core.import_pose.pose_stream.MetaPoseInputStream) -> rosetta.utility.vector1_std_shared_ptr_core_import_pose_pose_stream_PoseInputStream_t
- has_another_pose(...) from builtins.PyCapsule
- has_another_pose(rosetta.core.import_pose.pose_stream.MetaPoseInputStream) -> bool
- reset(...) from builtins.PyCapsule
- reset(rosetta.core.import_pose.pose_stream.MetaPoseInputStream) -> NoneType
Methods inherited from PoseInputStream:
- get_all_poses(...) from builtins.PyCapsule
- get_all_poses(self : rosetta.core.import_pose.pose_stream.PoseInputStream, residue_set : rosetta.core.chemical.ResidueTypeSet) -> rosetta.utility.vector1_std_shared_ptr_core_pose_Pose_t
- preprocess_pose(...) from builtins.PyCapsule
- preprocess_pose(self : rosetta.core.import_pose.pose_stream.PoseInputStream, pose : rosetta.core.pose.Pose) -> NoneType
Perform common operations on a Pose dependent on command-line
options before finishing fill_pose. This includes optimizing hydrogens,
adding constraints, and finding disulfides. This should be called in the
fill_pose method of derived classes.
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class PDBPoseInputStream(PoseInputStream) |
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- Method resolution order:
- PDBPoseInputStream
- PoseInputStream
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle) -> NoneType
2. __init__(self : handle, fns : rosetta.utility.vector1_utility_file_FileName) -> NoneType
3. __init__(self : handle, fn : rosetta.utility.file.FileName) -> NoneType
4. __init__(self : handle, fns : rosetta.utility.vector1_utility_file_FileName, list_fns : rosetta.utility.vector1_utility_file_FileName) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- add_list_filenames(...) from builtins.PyCapsule
- add_list_filenames(self : rosetta.core.import_pose.pose_stream.PDBPoseInputStream, list_fns : rosetta.utility.vector1_utility_file_FileName) -> NoneType
adds a list of files each containing lists of PDBs
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.import_pose.pose_stream.PDBPoseInputStream, : rosetta.core.import_pose.pose_stream.PDBPoseInputStream) -> rosetta.core.import_pose.pose_stream.PDBPoseInputStream
- fill_pose(...) from builtins.PyCapsule
- fill_pose(*args, **kwargs)
Overloaded function.
1. fill_pose(self : rosetta.core.import_pose.pose_stream.PDBPoseInputStream, pose : rosetta.core.pose.Pose, residue_set : rosetta.core.chemical.ResidueTypeSet) -> NoneType
2. fill_pose(self : rosetta.core.import_pose.pose_stream.PDBPoseInputStream, : rosetta.core.pose.Pose) -> NoneType
- get_all_poses(...) from builtins.PyCapsule
- get_all_poses(self : rosetta.core.import_pose.pose_stream.PDBPoseInputStream, residue_set : rosetta.core.chemical.ResidueTypeSet) -> rosetta.utility.vector1_std_shared_ptr_core_pose_Pose_t
- get_filenames(...) from builtins.PyCapsule
- get_filenames(rosetta.core.import_pose.pose_stream.PDBPoseInputStream) -> rosetta.utility.vector1_utility_file_FileName
- has_another_pose(...) from builtins.PyCapsule
- has_another_pose(rosetta.core.import_pose.pose_stream.PDBPoseInputStream) -> bool
- reset(...) from builtins.PyCapsule
- reset(rosetta.core.import_pose.pose_stream.PDBPoseInputStream) -> NoneType
- set_filenames(...) from builtins.PyCapsule
- set_filenames(self : rosetta.core.import_pose.pose_stream.PDBPoseInputStream, filenames : rosetta.utility.vector1_utility_file_FileName) -> NoneType
Methods inherited from PoseInputStream:
- preprocess_pose(...) from builtins.PyCapsule
- preprocess_pose(self : rosetta.core.import_pose.pose_stream.PoseInputStream, pose : rosetta.core.pose.Pose) -> NoneType
Perform common operations on a Pose dependent on command-line
options before finishing fill_pose. This includes optimizing hydrogens,
adding constraints, and finding disulfides. This should be called in the
fill_pose method of derived classes.
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class PoseInputStream(builtins.object) |
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Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(rosetta.core.import_pose.pose_stream.PoseInputStream) -> NoneType
2. __init__(rosetta.core.import_pose.pose_stream.PoseInputStream, rosetta.core.import_pose.pose_stream.PoseInputStream) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.import_pose.pose_stream.PoseInputStream, : rosetta.core.import_pose.pose_stream.PoseInputStream) -> rosetta.core.import_pose.pose_stream.PoseInputStream
- fill_pose(...) from builtins.PyCapsule
- fill_pose(*args, **kwargs)
Overloaded function.
1. fill_pose(self : rosetta.core.import_pose.pose_stream.PoseInputStream, : rosetta.core.pose.Pose, : rosetta.core.chemical.ResidueTypeSet) -> NoneType
2. fill_pose(self : rosetta.core.import_pose.pose_stream.PoseInputStream, : rosetta.core.pose.Pose) -> NoneType
- get_all_poses(...) from builtins.PyCapsule
- get_all_poses(self : rosetta.core.import_pose.pose_stream.PoseInputStream, residue_set : rosetta.core.chemical.ResidueTypeSet) -> rosetta.utility.vector1_std_shared_ptr_core_pose_Pose_t
- has_another_pose(...) from builtins.PyCapsule
- has_another_pose(rosetta.core.import_pose.pose_stream.PoseInputStream) -> bool
- preprocess_pose(...) from builtins.PyCapsule
- preprocess_pose(self : rosetta.core.import_pose.pose_stream.PoseInputStream, pose : rosetta.core.pose.Pose) -> NoneType
Perform common operations on a Pose dependent on command-line
options before finishing fill_pose. This includes optimizing hydrogens,
adding constraints, and finding disulfides. This should be called in the
fill_pose method of derived classes.
- reset(...) from builtins.PyCapsule
- reset(rosetta.core.import_pose.pose_stream.PoseInputStream) -> NoneType
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class SilentFilePoseInputStream(PoseInputStream) |
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- Method resolution order:
- SilentFilePoseInputStream
- PoseInputStream
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle) -> NoneType
2. __init__(self : handle, fns : rosetta.utility.vector1_utility_file_FileName) -> NoneType
3. __init__(self : handle, fn : str) -> NoneType
4. __init__(self : handle, fns : rosetta.utility.vector1_utility_file_FileName, order_by_energy : bool) -> NoneType
5. __init__(self : handle, fns : rosetta.utility.vector1_utility_file_FileName, energy_cut : float) -> NoneType
6. __init__(self : handle, fns : rosetta.utility.vector1_utility_file_FileName, input_tags : rosetta.utility.vector1_std_string) -> NoneType
7. __init__(self : handle, fns : rosetta.utility.vector1_utility_file_FileName, input_tags : rosetta.utility.vector1_std_string, energy_cut : float) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream, : rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream) -> rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream
- energy_cut(...) from builtins.PyCapsule
- energy_cut(rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream) -> float
- filenames(...) from builtins.PyCapsule
- filenames(*args, **kwargs)
Overloaded function.
1. filenames(self : rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream, filenames : rosetta.utility.vector1_utility_file_FileName) -> NoneType
2. filenames(rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream) -> rosetta.utility.vector1_utility_file_FileName
- fill_pose(...) from builtins.PyCapsule
- fill_pose(*args, **kwargs)
Overloaded function.
1. fill_pose(self : rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream, pose : rosetta.core.pose.Pose, residue_set : rosetta.core.chemical.ResidueTypeSet) -> NoneType
2. fill_pose(self : rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream, : rosetta.core.pose.Pose) -> NoneType
- has_another_pose(...) from builtins.PyCapsule
- has_another_pose(rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream) -> bool
- next_struct(...) from builtins.PyCapsule
- next_struct(rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream) -> rosetta.core.io.silent.SilentStruct
- renumber_decoys(...) from builtins.PyCapsule
- renumber_decoys(*args, **kwargs)
Overloaded function.
1. renumber_decoys(self : rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream, setting : bool) -> NoneType
2. renumber_decoys(rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream) -> bool
- reset(...) from builtins.PyCapsule
- reset(rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream) -> NoneType
- set_order_by_energy(...) from builtins.PyCapsule
- set_order_by_energy(self : rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream, setting : bool) -> NoneType
- set_record_source(...) from builtins.PyCapsule
- set_record_source(self : rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream, setting : bool) -> NoneType
- set_silent_file_data(...) from builtins.PyCapsule
- set_silent_file_data(self : rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream, sfd : rosetta.core.io.silent.SilentFileData) -> NoneType
- silent_file_data(...) from builtins.PyCapsule
- silent_file_data(rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream) -> rosetta.core.io.silent.SilentFileData
Access the SilentFileData owning pointer directly.
- tags(...) from builtins.PyCapsule
- tags(*args, **kwargs)
Overloaded function.
1. tags(self : rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream, tags : rosetta.utility.vector1_std_string) -> NoneType
2. tags(rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream) -> rosetta.utility.vector1_std_string
Methods inherited from PoseInputStream:
- get_all_poses(...) from builtins.PyCapsule
- get_all_poses(self : rosetta.core.import_pose.pose_stream.PoseInputStream, residue_set : rosetta.core.chemical.ResidueTypeSet) -> rosetta.utility.vector1_std_shared_ptr_core_pose_Pose_t
- preprocess_pose(...) from builtins.PyCapsule
- preprocess_pose(self : rosetta.core.import_pose.pose_stream.PoseInputStream, pose : rosetta.core.pose.Pose) -> NoneType
Perform common operations on a Pose dependent on command-line
options before finishing fill_pose. This includes optimizing hydrogens,
adding constraints, and finding disulfides. This should be called in the
fill_pose method of derived classes.
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