Bindings for core::import_pose::atom_tree_diffs namespace

Classes
		builtins.object AtomTreeDiff   class AtomTreeDiff(builtins.object)     An object wrapper for reading atom_tree_diff files, complete with embedded reference structures.     Only works with uncompressed files, because we have to be able to to random access (seekg) to pull out single structures in random order.     Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.import_pose.atom_tree_diffs.AtomTreeDiff) -> NoneType   2. __init__(self : rosetta.core.import_pose.atom_tree_diffs.AtomTreeDiff, filename : str) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. all_ref_poses(...) from builtins.PyCapsule all_ref_poses(rosetta.core.import_pose.atom_tree_diffs.AtomTreeDiff) -> rosetta.utility.vector1_std_shared_ptr_core_pose_Pose_t   Allows access to and mutation of (!) the references poses stored in this file.  Use with caution.      This exists to allow setup on stored reference poses for properties that don't get saved/restored  in PDB format, like covalent constraints for enzyme design. count(...) from builtins.PyCapsule count(self : rosetta.core.import_pose.atom_tree_diffs.AtomTreeDiff, tag : str) -> int get_ref_tags(...) from builtins.PyCapsule get_ref_tags(rosetta.core.import_pose.atom_tree_diffs.AtomTreeDiff) -> rosetta.std.map_std_string_int get_tag_score_map(...) from builtins.PyCapsule get_tag_score_map(rosetta.core.import_pose.atom_tree_diffs.AtomTreeDiff) -> rosetta.std.map_std_string_unsigned_long has_ref_pose(...) from builtins.PyCapsule has_ref_pose(self : rosetta.core.import_pose.atom_tree_diffs.AtomTreeDiff, tag : str) -> bool   returns true if a reference struct with the given tag is present has_ref_tag(...) from builtins.PyCapsule has_ref_tag(self : rosetta.core.import_pose.atom_tree_diffs.AtomTreeDiff, tag : str) -> bool has_tag(...) from builtins.PyCapsule has_tag(self : rosetta.core.import_pose.atom_tree_diffs.AtomTreeDiff, tag : str) -> bool   True if a (non-reference) structure with the given tag is present in the file read_file(...) from builtins.PyCapsule read_file(self : rosetta.core.import_pose.atom_tree_diffs.AtomTreeDiff, filename : str) -> NoneType read_pose(...) from builtins.PyCapsule read_pose(*args, **kwargs) Overloaded function.   1. read_pose(self : rosetta.core.import_pose.atom_tree_diffs.AtomTreeDiff, tag : str, pose_out : rosetta.core.pose.Pose) -> NoneType   Reads the pose data from file and reconstructs the complete pose.   2. read_pose(self : rosetta.core.import_pose.atom_tree_diffs.AtomTreeDiff, tag : str, pose_out : rosetta.core.pose.Pose, ref_pose : rosetta.core.pose.Pose) -> NoneType   Reads the pose data from file and reconstructs the complete pose, using the supplied reference pose. ref_pose_for(...) from builtins.PyCapsule ref_pose_for(self : rosetta.core.import_pose.atom_tree_diffs.AtomTreeDiff, tag : str) -> rosetta.core.pose.Pose   Returns the default reference pose for the given tag.  Fails if none is available. scores(...) from builtins.PyCapsule scores(rosetta.core.import_pose.atom_tree_diffs.AtomTreeDiff) -> rosetta.utility.vector1_std_pair_std_string_std_map_std_string_double_std_less_std_string_std_allocator_std_pair_const_std_string_double_t   Return list of (pose tag, score sets) pairs for all poses, in file order. sort_by(...) from builtins.PyCapsule sort_by(*args, **kwargs) Overloaded function.   1. sort_by(score_name : str, scores : rosetta.utility.vector1_std_pair_std_string_std_map_std_string_double_std_less_std_string_std_allocator_std_pair_const_std_string_double_t) -> NoneType   Utility function for selecting subsets of structures by score.   2. sort_by(score_name : str, scores : rosetta.utility.vector1_std_pair_std_string_std_map_std_string_double_std_less_std_string_std_allocator_std_pair_const_std_string_double_t, descending : bool) -> NoneType   Utility function for selecting subsets of structures by score.

Functions
		file_is_atom_tree_diff(...) method of builtins.PyCapsule instance file_is_atom_tree_diff(filename : str) -> bool   Test if given file is an atom_tree_diff map_of_weighted_scores(...) method of builtins.PyCapsule instance map_of_weighted_scores(pose : rosetta.core.pose.Pose, sfxn : rosetta.core.scoring.ScoreFunction, scores_out : rosetta.std.map_std_string_double) -> NoneType   Helper for dump_atom_tree_diff(), fills map with weighted score terms. rms_error_with_noise(...) method of builtins.PyCapsule instance rms_error_with_noise(*args, **kwargs) Overloaded function.   1. rms_error_with_noise(ref_pose : rosetta.core.pose.Pose) -> NoneType   For use in deciding how many digits of precision you need when diffing an atom tree.   2. rms_error_with_noise(ref_pose : rosetta.core.pose.Pose, bb_precision : int) -> NoneType   For use in deciding how many digits of precision you need when diffing an atom tree.   3. rms_error_with_noise(ref_pose : rosetta.core.pose.Pose, bb_precision : int, sc_precision : int) -> NoneType   For use in deciding how many digits of precision you need when diffing an atom tree.