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- builtins.object
-
- Parameters
- ParametersSet
class Parameters(builtins.object) |
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Parameters class, used to store sets of parameters for parametric backbone generation.
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Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle) -> NoneType
2. __init__(handle, rosetta.core.conformation.parametric.Parameters) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- add_residue(...) from builtins.PyCapsule
- add_residue(self : rosetta.core.conformation.parametric.Parameters, residue : rosetta.core.conformation.Residue) -> NoneType
Add a residue to the list of residues that these parameters describe.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.conformation.parametric.Parameters, : rosetta.core.conformation.parametric.Parameters) -> rosetta.core.conformation.parametric.Parameters
- clone(...) from builtins.PyCapsule
- clone(rosetta.core.conformation.parametric.Parameters) -> rosetta.core.conformation.parametric.Parameters
Copy this residue( allocate actual memory for it )
- first_residue(...) from builtins.PyCapsule
- first_residue(rosetta.core.conformation.parametric.Parameters) -> rosetta.core.conformation.Residue
Get a const owning pointer to the first residue in the list of residues that these parameters describe.
Note that this might not be the first residue in linear sequence, if the residues were put in in non-
sequential order or the residue numbering has changed.
- first_residue_index(...) from builtins.PyCapsule
- first_residue_index(rosetta.core.conformation.parametric.Parameters) -> int
Get the index of the first residue.
MUST BE REWRITTEN when the OP issue is resolved.
- get_self_ptr(...) from builtins.PyCapsule
- get_self_ptr(*args, **kwargs)
Overloaded function.
1. get_self_ptr(rosetta.core.conformation.parametric.Parameters) -> rosetta.core.conformation.parametric.Parameters
self pointers
2. get_self_ptr(rosetta.core.conformation.parametric.Parameters) -> rosetta.core.conformation.parametric.Parameters
- get_self_weak_ptr(...) from builtins.PyCapsule
- get_self_weak_ptr(*args, **kwargs)
Overloaded function.
1. get_self_weak_ptr(rosetta.core.conformation.parametric.Parameters) -> rosetta.std.weak_ptr_const_core_conformation_parametric_Parameters_t
2. get_self_weak_ptr(rosetta.core.conformation.parametric.Parameters) -> rosetta.std.weak_ptr_core_conformation_parametric_Parameters_t
- last_residue(...) from builtins.PyCapsule
- last_residue(rosetta.core.conformation.parametric.Parameters) -> rosetta.core.conformation.Residue
Get a const owning pointer to the last residue in the list of residues that these parameters describe.
Note that this might not be the last residue in linear sequence, if the residues were put in in non-
sequential order or the residue numbering has changed.
- last_residue_index(...) from builtins.PyCapsule
- last_residue_index(rosetta.core.conformation.parametric.Parameters) -> int
Get the index of the last residue.
MUST BE REWRITTEN when the OP issue is resolved.
- n_residue(...) from builtins.PyCapsule
- n_residue(rosetta.core.conformation.parametric.Parameters) -> int
Returns the number (count) of residues that these parameters describe.
- reset_residue_list(...) from builtins.PyCapsule
- reset_residue_list(rosetta.core.conformation.parametric.Parameters) -> NoneType
Clears the list of residues that these parameters describe.
- residue(...) from builtins.PyCapsule
- residue(self : rosetta.core.conformation.parametric.Parameters, index : int) -> rosetta.core.conformation.Residue
Get an owning pointer to a residue in the list of residues that these parameters describe.
- residue_cop(...) from builtins.PyCapsule
- residue_cop(self : rosetta.core.conformation.parametric.Parameters, index : int) -> rosetta.core.conformation.Residue
Get a const owning pointer to a residue in the list of residues that these parameters describe.
- set_residue(...) from builtins.PyCapsule
- set_residue(self : rosetta.core.conformation.parametric.Parameters, index : int, existing_residue : rosetta.core.conformation.Residue) -> NoneType
Assign an element in the residue list to be an owning pointer to an existing residue.
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class ParametersSet(builtins.object) |
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ParametersSet class, used to store sets of parameters for parametric backbone generation.
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Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle) -> NoneType
2. __init__(handle, rosetta.core.conformation.parametric.ParametersSet) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- add_parameters(...) from builtins.PyCapsule
- add_parameters(self : rosetta.core.conformation.parametric.ParametersSet, new_parameters : rosetta.core.conformation.parametric.Parameters) -> NoneType
Add a Parameters object to the set included in this ParametersSet object.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.conformation.parametric.ParametersSet, : rosetta.core.conformation.parametric.ParametersSet) -> rosetta.core.conformation.parametric.ParametersSet
- clear_parameters_list(...) from builtins.PyCapsule
- clear_parameters_list(rosetta.core.conformation.parametric.ParametersSet) -> NoneType
Delete all owning pointers in the parameters_ list and reset the list.
- clone(...) from builtins.PyCapsule
- clone(rosetta.core.conformation.parametric.ParametersSet) -> rosetta.core.conformation.parametric.ParametersSet
Copy this residue( allocate actual memory for it )
- get_pdb_remark(...) from builtins.PyCapsule
- get_pdb_remark(self : rosetta.core.conformation.parametric.ParametersSet, remark : std::basic_stringstream<char, std::char_traits<char>, std::allocator<char> >) -> NoneType
Get a summary of this ParametersSet object, for output to remark lines of a PDB file.
Default function can be overridden by derived classes. The default message just says that the
parameterization does not support output to PDB remark lines. Note that messages must have lines less than
about fifty characters, or they get truncated in REMARK output.
- get_self_ptr(...) from builtins.PyCapsule
- get_self_ptr(*args, **kwargs)
Overloaded function.
1. get_self_ptr(rosetta.core.conformation.parametric.ParametersSet) -> rosetta.core.conformation.parametric.ParametersSet
self pointers
2. get_self_ptr(rosetta.core.conformation.parametric.ParametersSet) -> rosetta.core.conformation.parametric.ParametersSet
- get_self_weak_ptr(...) from builtins.PyCapsule
- get_self_weak_ptr(*args, **kwargs)
Overloaded function.
1. get_self_weak_ptr(rosetta.core.conformation.parametric.ParametersSet) -> rosetta.std.weak_ptr_const_core_conformation_parametric_ParametersSet_t
2. get_self_weak_ptr(rosetta.core.conformation.parametric.ParametersSet) -> rosetta.std.weak_ptr_core_conformation_parametric_ParametersSet_t
- n_parameters(...) from builtins.PyCapsule
- n_parameters(rosetta.core.conformation.parametric.ParametersSet) -> int
Get the number of Parameters objects associated with this ParametersSet.
- parameters(...) from builtins.PyCapsule
- parameters(*args, **kwargs)
Overloaded function.
1. parameters(self : rosetta.core.conformation.parametric.ParametersSet, index : int) -> rosetta.core.conformation.parametric.Parameters
Get a Parameters object by index.
2. parameters(self : rosetta.core.conformation.parametric.ParametersSet, index : int) -> rosetta.core.conformation.parametric.Parameters
Get a Parameters object by index (const-access).
- update_residue_links(...) from builtins.PyCapsule
- update_residue_links(self : rosetta.core.conformation.parametric.ParametersSet, new_conf : core::conformation::Conformation) -> NoneType
Only for copying Conformation objects, this ensures that the new ParametersSet object's
Parameters objects have lists of ResidueOPs that point to residues in the new Conformation object,
rather than to residues that only exist in the Parameters objects.
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