Bindings for core::chemical::rna namespace

Classes
		builtins.object BaseDoubletOrientation BaseEdge BaseStackWhichSide ChiState GaussianParameter LW_BaseDoubletOrientation PuckerState RNA_FittedTorsionInfo RNA_ResidueType RNA_Torsion   class BaseDoubletOrientation(builtins.object)       Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(rosetta.core.chemical.rna.BaseDoubletOrientation, rosetta.core.chemical.rna.BaseDoubletOrientation) -> bool __hash__(...) from builtins.PyCapsule __hash__(rosetta.core.chemical.rna.BaseDoubletOrientation) -> int __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.chemical.rna.BaseDoubletOrientation, int) -> NoneType   2. __init__(rosetta.core.chemical.rna.BaseDoubletOrientation, int) -> NoneType __int__(...) from builtins.PyCapsule __int__(rosetta.core.chemical.rna.BaseDoubletOrientation) -> int __ne__(...) from builtins.PyCapsule __ne__(rosetta.core.chemical.rna.BaseDoubletOrientation, rosetta.core.chemical.rna.BaseDoubletOrientation) -> bool __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. __repr__(...) from builtins.PyCapsule __repr__(rosetta.core.chemical.rna.BaseDoubletOrientation) -> str Data and other attributes defined here: ANTIPARALLEL = BaseDoubletOrientation.ANTIPARALLEL ANY_BASE_DOUBLET_ORIENTATION = BaseDoubletOrientation.ANY_BASE_DOUBLET_ORIENTATION PARALLEL = BaseDoubletOrientation.PARALLEL   class BaseEdge(builtins.object)       Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(rosetta.core.chemical.rna.BaseEdge, rosetta.core.chemical.rna.BaseEdge) -> bool __hash__(...) from builtins.PyCapsule __hash__(rosetta.core.chemical.rna.BaseEdge) -> int __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.chemical.rna.BaseEdge, int) -> NoneType   2. __init__(rosetta.core.chemical.rna.BaseEdge, int) -> NoneType __int__(...) from builtins.PyCapsule __int__(rosetta.core.chemical.rna.BaseEdge) -> int __ne__(...) from builtins.PyCapsule __ne__(rosetta.core.chemical.rna.BaseEdge, rosetta.core.chemical.rna.BaseEdge) -> bool __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. __repr__(...) from builtins.PyCapsule __repr__(rosetta.core.chemical.rna.BaseEdge) -> str Data and other attributes defined here: ANY_BASE_EDGE = BaseEdge.ANY_BASE_EDGE HOOGSTEEN = BaseEdge.HOOGSTEEN O2PRIME = BaseEdge.O2PRIME PHOSPHATE = BaseEdge.PHOSPHATE SUGAR = BaseEdge.SUGAR WATSON_CRICK = BaseEdge.WATSON_CRICK   class BaseStackWhichSide(builtins.object)       Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(rosetta.core.chemical.rna.BaseStackWhichSide, rosetta.core.chemical.rna.BaseStackWhichSide) -> bool __hash__(...) from builtins.PyCapsule __hash__(rosetta.core.chemical.rna.BaseStackWhichSide) -> int __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.chemical.rna.BaseStackWhichSide, int) -> NoneType   2. __init__(rosetta.core.chemical.rna.BaseStackWhichSide, int) -> NoneType __int__(...) from builtins.PyCapsule __int__(rosetta.core.chemical.rna.BaseStackWhichSide) -> int __ne__(...) from builtins.PyCapsule __ne__(rosetta.core.chemical.rna.BaseStackWhichSide, rosetta.core.chemical.rna.BaseStackWhichSide) -> bool __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. __repr__(...) from builtins.PyCapsule __repr__(rosetta.core.chemical.rna.BaseStackWhichSide) -> str Data and other attributes defined here: ABOVE = BaseStackWhichSide.ABOVE ANY_BASE_STACK_SIDE = BaseStackWhichSide.ANY_BASE_STACK_SIDE BELOW = BaseStackWhichSide.BELOW   class ChiState(builtins.object)       Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(rosetta.core.chemical.rna.ChiState, rosetta.core.chemical.rna.ChiState) -> bool __hash__(...) from builtins.PyCapsule __hash__(rosetta.core.chemical.rna.ChiState) -> int __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.chemical.rna.ChiState, int) -> NoneType   2. __init__(rosetta.core.chemical.rna.ChiState, int) -> NoneType __int__(...) from builtins.PyCapsule __int__(rosetta.core.chemical.rna.ChiState) -> int __ne__(...) from builtins.PyCapsule __ne__(rosetta.core.chemical.rna.ChiState, rosetta.core.chemical.rna.ChiState) -> bool __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. __repr__(...) from builtins.PyCapsule __repr__(rosetta.core.chemical.rna.ChiState) -> str Data and other attributes defined here: ANTI = ChiState.ANTI ANY_CHI = ChiState.ANY_CHI NO_CHI = ChiState.NO_CHI SYN = ChiState.SYN   class GaussianParameter(builtins.object)     //////////////////////////////////////     Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : rosetta.core.chemical.rna.GaussianParameter, amplitude_in : float, center_in : float, width_in : float) -> NoneType   2. __init__(self : rosetta.core.chemical.rna.GaussianParameter,  : rosetta.core.chemical.rna.GaussianParameter) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.chemical.rna.GaussianParameter,  : rosetta.core.chemical.rna.GaussianParameter) -> rosetta.core.chemical.rna.GaussianParameter Data descriptors defined here: amplitude center width   class LW_BaseDoubletOrientation(builtins.object)       Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(rosetta.core.chemical.rna.LW_BaseDoubletOrientation, rosetta.core.chemical.rna.LW_BaseDoubletOrientation) -> bool __hash__(...) from builtins.PyCapsule __hash__(rosetta.core.chemical.rna.LW_BaseDoubletOrientation) -> int __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.chemical.rna.LW_BaseDoubletOrientation, int) -> NoneType   2. __init__(rosetta.core.chemical.rna.LW_BaseDoubletOrientation, int) -> NoneType __int__(...) from builtins.PyCapsule __int__(rosetta.core.chemical.rna.LW_BaseDoubletOrientation) -> int __ne__(...) from builtins.PyCapsule __ne__(rosetta.core.chemical.rna.LW_BaseDoubletOrientation, rosetta.core.chemical.rna.LW_BaseDoubletOrientation) -> bool __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. __repr__(...) from builtins.PyCapsule __repr__(rosetta.core.chemical.rna.LW_BaseDoubletOrientation) -> str Data and other attributes defined here: ANY_LW_BASE_DOUBLET_ORIENTATION = LW_BaseDoubletOrientation.ANY_LW_BASE_DOUBLET_ORIENTATION CIS = LW_BaseDoubletOrientation.CIS TRANS = LW_BaseDoubletOrientation.TRANS   class PuckerState(builtins.object)       Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(rosetta.core.chemical.rna.PuckerState, rosetta.core.chemical.rna.PuckerState) -> bool __hash__(...) from builtins.PyCapsule __hash__(rosetta.core.chemical.rna.PuckerState) -> int __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.chemical.rna.PuckerState, int) -> NoneType   2. __init__(rosetta.core.chemical.rna.PuckerState, int) -> NoneType __int__(...) from builtins.PyCapsule __int__(rosetta.core.chemical.rna.PuckerState) -> int __ne__(...) from builtins.PyCapsule __ne__(rosetta.core.chemical.rna.PuckerState, rosetta.core.chemical.rna.PuckerState) -> bool __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. __repr__(...) from builtins.PyCapsule __repr__(rosetta.core.chemical.rna.PuckerState) -> str Data and other attributes defined here: ANY_PUCKER = PuckerState.ANY_PUCKER NORTH = PuckerState.NORTH NO_PUCKER = PuckerState.NO_PUCKER SOUTH = PuckerState.SOUTH   class RNA_FittedTorsionInfo(builtins.object)     //////////////////////////////     Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> NoneType   2. __init__(self : rosetta.core.chemical.rna.RNA_FittedTorsionInfo,  : rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. alpha_aform(...) from builtins.PyCapsule alpha_aform(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> float beta_aform(...) from builtins.PyCapsule beta_aform(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> float chi_north_anti(...) from builtins.PyCapsule chi_north_anti(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> float chi_north_syn(...) from builtins.PyCapsule chi_north_syn(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> float chi_south_anti(...) from builtins.PyCapsule chi_south_anti(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> float chi_south_syn(...) from builtins.PyCapsule chi_south_syn(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> float delta_cutoff(...) from builtins.PyCapsule delta_cutoff(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> float delta_north(...) from builtins.PyCapsule delta_north(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> float delta_south(...) from builtins.PyCapsule delta_south(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> float epsilon_aform(...) from builtins.PyCapsule epsilon_aform(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> float epsilon_north(...) from builtins.PyCapsule epsilon_north(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> float epsilon_south(...) from builtins.PyCapsule epsilon_south(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> float gamma_aform(...) from builtins.PyCapsule gamma_aform(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> float gaussian_parameter_set_alpha(...) from builtins.PyCapsule gaussian_parameter_set_alpha(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> rosetta.utility.vector1_core_chemical_rna_GaussianParameter gaussian_parameter_set_beta(...) from builtins.PyCapsule gaussian_parameter_set_beta(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> rosetta.utility.vector1_core_chemical_rna_GaussianParameter gaussian_parameter_set_chi_north(...) from builtins.PyCapsule gaussian_parameter_set_chi_north(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> rosetta.utility.vector1_core_chemical_rna_GaussianParameter gaussian_parameter_set_chi_south(...) from builtins.PyCapsule gaussian_parameter_set_chi_south(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> rosetta.utility.vector1_core_chemical_rna_GaussianParameter gaussian_parameter_set_delta_north(...) from builtins.PyCapsule gaussian_parameter_set_delta_north(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> rosetta.utility.vector1_core_chemical_rna_GaussianParameter gaussian_parameter_set_delta_south(...) from builtins.PyCapsule gaussian_parameter_set_delta_south(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> rosetta.utility.vector1_core_chemical_rna_GaussianParameter gaussian_parameter_set_epsilon_north(...) from builtins.PyCapsule gaussian_parameter_set_epsilon_north(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> rosetta.utility.vector1_core_chemical_rna_GaussianParameter gaussian_parameter_set_epsilon_south(...) from builtins.PyCapsule gaussian_parameter_set_epsilon_south(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> rosetta.utility.vector1_core_chemical_rna_GaussianParameter gaussian_parameter_set_gamma(...) from builtins.PyCapsule gaussian_parameter_set_gamma(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> rosetta.utility.vector1_core_chemical_rna_GaussianParameter gaussian_parameter_set_nu1_north(...) from builtins.PyCapsule gaussian_parameter_set_nu1_north(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> rosetta.utility.vector1_core_chemical_rna_GaussianParameter gaussian_parameter_set_nu1_south(...) from builtins.PyCapsule gaussian_parameter_set_nu1_south(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> rosetta.utility.vector1_core_chemical_rna_GaussianParameter gaussian_parameter_set_nu2_north(...) from builtins.PyCapsule gaussian_parameter_set_nu2_north(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> rosetta.utility.vector1_core_chemical_rna_GaussianParameter gaussian_parameter_set_nu2_south(...) from builtins.PyCapsule gaussian_parameter_set_nu2_south(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> rosetta.utility.vector1_core_chemical_rna_GaussianParameter gaussian_parameter_set_zeta_alpha_ap(...) from builtins.PyCapsule gaussian_parameter_set_zeta_alpha_ap(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> rosetta.utility.vector1_core_chemical_rna_GaussianParameter gaussian_parameter_set_zeta_alpha_sc_minus(...) from builtins.PyCapsule gaussian_parameter_set_zeta_alpha_sc_minus(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> rosetta.utility.vector1_core_chemical_rna_GaussianParameter gaussian_parameter_set_zeta_alpha_sc_plus(...) from builtins.PyCapsule gaussian_parameter_set_zeta_alpha_sc_plus(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> rosetta.utility.vector1_core_chemical_rna_GaussianParameter nu1_north(...) from builtins.PyCapsule nu1_north(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> float nu1_south(...) from builtins.PyCapsule nu1_south(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> float nu2_north(...) from builtins.PyCapsule nu2_north(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> float nu2_south(...) from builtins.PyCapsule nu2_south(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> float zeta_aform(...) from builtins.PyCapsule zeta_aform(rosetta.core.chemical.rna.RNA_FittedTorsionInfo) -> float   class RNA_ResidueType(builtins.object)     //////////////////////////////////Parin S, Dec 23, 2011: RNA stuff//////////////////////////////////////////     Methods defined here: RNA_base_atoms(...) from builtins.PyCapsule RNA_base_atoms(rosetta.core.chemical.rna.RNA_ResidueType) -> rosetta.utility.vector1_unsigned_long __init__(...) from builtins.PyCapsule __init__(rosetta.core.chemical.rna.RNA_ResidueType) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.core.chemical.rna.RNA_ResidueType,  : rosetta.core.chemical.rna.RNA_ResidueType) -> rosetta.core.chemical.rna.RNA_ResidueType atom_is_phosphate(...) from builtins.PyCapsule atom_is_phosphate(self : rosetta.core.chemical.rna.RNA_ResidueType, atomno : int) -> bool   quick lookup: is the atom with the given index is part of the RNA phosphate or not? atom_is_virtual(...) from builtins.PyCapsule atom_is_virtual(self : rosetta.core.chemical.rna.RNA_ResidueType, atomno : int) -> bool c1prime_atom_index(...) from builtins.PyCapsule c1prime_atom_index(rosetta.core.chemical.rna.RNA_ResidueType) -> int c2prime_atom_index(...) from builtins.PyCapsule c2prime_atom_index(rosetta.core.chemical.rna.RNA_ResidueType) -> int c4prime_atom_index(...) from builtins.PyCapsule c4prime_atom_index(rosetta.core.chemical.rna.RNA_ResidueType) -> int chi_number_pseudoalpha(...) from builtins.PyCapsule chi_number_pseudoalpha(rosetta.core.chemical.rna.RNA_ResidueType) -> int chi_number_pseudobeta(...) from builtins.PyCapsule chi_number_pseudobeta(rosetta.core.chemical.rna.RNA_ResidueType) -> int chi_number_pseudoepsilon(...) from builtins.PyCapsule chi_number_pseudoepsilon(rosetta.core.chemical.rna.RNA_ResidueType) -> int chi_number_pseudogamma(...) from builtins.PyCapsule chi_number_pseudogamma(rosetta.core.chemical.rna.RNA_ResidueType) -> int chi_number_pseudozeta(...) from builtins.PyCapsule chi_number_pseudozeta(rosetta.core.chemical.rna.RNA_ResidueType) -> int ho2prime_index(...) from builtins.PyCapsule ho2prime_index(rosetta.core.chemical.rna.RNA_ResidueType) -> int is_RNA_base(...) from builtins.PyCapsule is_RNA_base(rosetta.core.chemical.rna.RNA_ResidueType) -> rosetta.utility.vector1_bool is_RNA_base_atom(...) from builtins.PyCapsule is_RNA_base_atom(self : rosetta.core.chemical.rna.RNA_ResidueType, atomno : int) -> bool is_phosphate(...) from builtins.PyCapsule is_phosphate(rosetta.core.chemical.rna.RNA_ResidueType) -> rosetta.utility.vector1_bool is_virtual(...) from builtins.PyCapsule is_virtual(rosetta.core.chemical.rna.RNA_ResidueType) -> rosetta.utility.vector1_bool   /////////Fast lookup functions/////// o2prime_index(...) from builtins.PyCapsule o2prime_index(rosetta.core.chemical.rna.RNA_ResidueType) -> int o3prime_atom_index(...) from builtins.PyCapsule o3prime_atom_index(rosetta.core.chemical.rna.RNA_ResidueType) -> int o4prime_atom_index(...) from builtins.PyCapsule o4prime_atom_index(rosetta.core.chemical.rna.RNA_ResidueType) -> int o5prime_atom_index(...) from builtins.PyCapsule o5prime_atom_index(rosetta.core.chemical.rna.RNA_ResidueType) -> int op1_atom_index(...) from builtins.PyCapsule op1_atom_index(rosetta.core.chemical.rna.RNA_ResidueType) -> int op2_atom_index(...) from builtins.PyCapsule op2_atom_index(rosetta.core.chemical.rna.RNA_ResidueType) -> int p_atom_index(...) from builtins.PyCapsule p_atom_index(rosetta.core.chemical.rna.RNA_ResidueType) -> int rna_update_last_controlling_chi(...) from builtins.PyCapsule rna_update_last_controlling_chi(self : rosetta.core.chemical.rna.RNA_ResidueType, residue_type_in : rosetta.std.weak_ptr_const_core_chemical_ResidueType_t, last_controlling_chi : rosetta.utility.vector1_unsigned_long, atoms_last_controlled_by_chi : rosetta.utility.vector1_utility_vector1_unsigned_long_std_allocator_unsigned_long_t) -> NoneType update_derived_rna_data(...) from builtins.PyCapsule update_derived_rna_data(self : rosetta.core.chemical.rna.RNA_ResidueType, residue_type_in : rosetta.std.weak_ptr_const_core_chemical_ResidueType_t) -> NoneType Data descriptors defined here: base_atom_list_ c1prime_index_ c2prime_index_ c4prime_index_ chi_number_pseudoalpha_ chi_number_pseudobeta_ chi_number_pseudoepsilon_ chi_number_pseudogamma_ chi_number_pseudozeta_ ho2prime_index_ is_RNA_base_ is_phosphate_ is_virtual_ o2prime_index_ o3prime_index_ o4prime_index_ o5prime_index_ op1_atom_index_ op2_atom_index_ p_atom_index_ residue_type_   class RNA_Torsion(builtins.object)       Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(rosetta.core.chemical.rna.RNA_Torsion, rosetta.core.chemical.rna.RNA_Torsion) -> bool __hash__(...) from builtins.PyCapsule __hash__(rosetta.core.chemical.rna.RNA_Torsion) -> int __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.core.chemical.rna.RNA_Torsion, int) -> NoneType   2. __init__(rosetta.core.chemical.rna.RNA_Torsion, int) -> NoneType __int__(...) from builtins.PyCapsule __int__(rosetta.core.chemical.rna.RNA_Torsion) -> int __ne__(...) from builtins.PyCapsule __ne__(rosetta.core.chemical.rna.RNA_Torsion, rosetta.core.chemical.rna.RNA_Torsion) -> bool __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. __repr__(...) from builtins.PyCapsule __repr__(rosetta.core.chemical.rna.RNA_Torsion) -> str Data and other attributes defined here: ALPHA = RNA_Torsion.ALPHA ANY_TORSION = RNA_Torsion.ANY_TORSION BETA = RNA_Torsion.BETA CHI = RNA_Torsion.CHI DELTA = RNA_Torsion.DELTA EPSILON = RNA_Torsion.EPSILON GAMMA = RNA_Torsion.GAMMA NU1 = RNA_Torsion.NU1 NU2 = RNA_Torsion.NU2 O2H = RNA_Torsion.O2H ZETA = RNA_Torsion.ZETA

Functions
		add_values_from_center(...) method of builtins.PyCapsule instance add_values_from_center(torsions : rosetta.utility.vector1_double, center : float, max_range : float, bin_size : float) -> NoneType chi1_torsion_atom(...) method of builtins.PyCapsule instance chi1_torsion_atom(rsd : core::conformation::Residue) -> str chi1_torsion_atom_index(...) method of builtins.PyCapsule instance chi1_torsion_atom_index(rsd : core::conformation::Residue) -> int convert_acgu_to_1234(...) method of builtins.PyCapsule instance convert_acgu_to_1234(c : str) -> int   //////////////////////////////////////////////////////////////////////////// default_jump_atom(...) method of builtins.PyCapsule instance default_jump_atom(rsd : core::conformation::Residue) -> str first_base_atom(...) method of builtins.PyCapsule instance first_base_atom(rsd : core::conformation::Residue) -> str   //////////////////////////////////////////////////////////////////////////// first_base_atom_index(...) method of builtins.PyCapsule instance first_base_atom_index(rsd : core::conformation::Residue) -> int get_LW_orientation_from_char(...) method of builtins.PyCapsule instance get_LW_orientation_from_char(o : str) -> rosetta.core.chemical.rna.LW_BaseDoubletOrientation get_WC_atom(...) method of builtins.PyCapsule instance get_WC_atom(res_type : rosetta.core.chemical.AA) -> str get_edge_from_char(...) method of builtins.PyCapsule instance get_edge_from_char(e : str) -> rosetta.core.chemical.rna.BaseEdge get_edge_from_num(...) method of builtins.PyCapsule instance get_edge_from_num(num : int) -> str get_epsilon_torsions(...) method of builtins.PyCapsule instance get_epsilon_torsions(*args, **kwargs) Overloaded function.   1. get_epsilon_torsions(delta : float, extra_epsilon : bool, bin_size : float) -> rosetta.utility.vector1_double   2. get_epsilon_torsions(north_pucker : bool) -> rosetta.utility.vector1_double   3. get_epsilon_torsions(north_pucker : bool, extra_epsilon : bool) -> rosetta.utility.vector1_double   4. get_epsilon_torsions(north_pucker : bool, extra_epsilon : bool, bin_size : float) -> rosetta.utility.vector1_double get_full_LW_orientation_from_num(...) method of builtins.PyCapsule instance get_full_LW_orientation_from_num(num : int) -> str get_full_edge_from_num(...) method of builtins.PyCapsule instance get_full_edge_from_num(num : int) -> str get_full_orientation_from_num(...) method of builtins.PyCapsule instance get_full_orientation_from_num(num : int) -> str get_full_side_from_num(...) method of builtins.PyCapsule instance get_full_side_from_num(num : int) -> str get_full_torsions(...) method of builtins.PyCapsule instance get_full_torsions(*args, **kwargs) Overloaded function.   1. get_full_torsions() -> rosetta.utility.vector1_double   2. get_full_torsions(bin_size : float) -> rosetta.utility.vector1_double get_orientation_from_char(...) method of builtins.PyCapsule instance get_orientation_from_char(o : str) -> rosetta.core.chemical.rna.BaseDoubletOrientation get_orientation_from_num(...) method of builtins.PyCapsule instance get_orientation_from_num(num : int) -> str get_residue_base_state(...) method of builtins.PyCapsule instance get_residue_base_state(rsd : core::conformation::Residue) -> rosetta.core.chemical.rna.ChiState get_residue_pucker_state(...) method of builtins.PyCapsule instance get_residue_pucker_state(rsd : core::conformation::Residue) -> rosetta.core.chemical.rna.PuckerState get_rna_base_centroid(...) method of builtins.PyCapsule instance get_rna_base_centroid(*args, **kwargs) Overloaded function.   1. get_rna_base_centroid(rsd : core::conformation::Residue) -> rosetta.numeric.xyzVector_double_t   2. get_rna_base_centroid(rsd : core::conformation::Residue, verbose : bool) -> rosetta.numeric.xyzVector_double_t get_rna_base_coordinate_system(...) method of builtins.PyCapsule instance get_rna_base_coordinate_system(rsd : core::conformation::Residue, centroid : rosetta.numeric.xyzVector_double_t) -> rosetta.numeric.xyzMatrix_double_t get_side_from_num(...) method of builtins.PyCapsule instance get_side_from_num(num : int) -> str get_watson_crick_base_pair_atoms(...) method of builtins.PyCapsule instance get_watson_crick_base_pair_atoms(*args, **kwargs) Overloaded function.   1. get_watson_crick_base_pair_atoms(rsd_type1 : core::conformation::Residue, rsd_type2 : core::conformation::Residue, atom1 : str, atom2 : str) -> NoneType   2. get_watson_crick_base_pair_atoms(rsd_type1 : core::conformation::Residue, rsd_type2 : core::conformation::Residue, atom_ids1 : rosetta.utility.vector1_std_string, atom_ids2 : rosetta.utility.vector1_std_string) -> NoneType is_base_phosphate_atom_pair(...) method of builtins.PyCapsule instance is_base_phosphate_atom_pair(rsd_1 : core::conformation::Residue, rsd_2 : core::conformation::Residue, atomno_1 : int, atomno_2 : int) -> bool is_purine(...) method of builtins.PyCapsule instance is_purine(rsd : core::conformation::Residue) -> bool possibly_canonical(...) method of builtins.PyCapsule instance possibly_canonical(aa1 : rosetta.core.chemical.AA, aa2 : rosetta.core.chemical.AA) -> bool possibly_canonical_strict(...) method of builtins.PyCapsule instance possibly_canonical_strict(aa1 : rosetta.core.chemical.AA, aa2 : rosetta.core.chemical.AA) -> bool rna_dna_match(...) method of builtins.PyCapsule instance rna_dna_match(aa1 : rosetta.core.chemical.AA, aa2 : rosetta.core.chemical.AA) -> bool

Data
		ABOVE = BaseStackWhichSide.ABOVE ALPHA = RNA_Torsion.ALPHA ANTI = ChiState.ANTI ANTIPARALLEL = BaseDoubletOrientation.ANTIPARALLEL ANY_BASE_DOUBLET_ORIENTATION = BaseDoubletOrientation.ANY_BASE_DOUBLET_ORIENTATION ANY_BASE_EDGE = BaseEdge.ANY_BASE_EDGE ANY_BASE_STACK_SIDE = BaseStackWhichSide.ANY_BASE_STACK_SIDE ANY_CHI = ChiState.ANY_CHI ANY_LW_BASE_DOUBLET_ORIENTATION = LW_BaseDoubletOrientation.ANY_LW_BASE_DOUBLET_ORIENTATION ANY_PUCKER = PuckerState.ANY_PUCKER ANY_TORSION = RNA_Torsion.ANY_TORSION BELOW = BaseStackWhichSide.BELOW BETA = RNA_Torsion.BETA CHI = RNA_Torsion.CHI CIS = LW_BaseDoubletOrientation.CIS DELTA = RNA_Torsion.DELTA EPSILON = RNA_Torsion.EPSILON GAMMA = RNA_Torsion.GAMMA HOOGSTEEN = BaseEdge.HOOGSTEEN NORTH = PuckerState.NORTH NO_CHI = ChiState.NO_CHI NO_PUCKER = PuckerState.NO_PUCKER NU1 = RNA_Torsion.NU1 NU2 = RNA_Torsion.NU2 O2H = RNA_Torsion.O2H O2PRIME = BaseEdge.O2PRIME PARALLEL = BaseDoubletOrientation.PARALLEL PHOSPHATE = BaseEdge.PHOSPHATE SOUTH = PuckerState.SOUTH SUGAR = BaseEdge.SUGAR SYN = ChiState.SYN TRANS = LW_BaseDoubletOrientation.TRANS WATSON_CRICK = BaseEdge.WATSON_CRICK ZETA = RNA_Torsion.ZETA