Bindings for basic::database namespace

Modules
		rosetta.basic.database.insert_statement_generator rosetta.basic.database.schema_generator

Classes
		rosetta.basic.resource_manager.ResourceLoader(builtins.object) DatabaseSessionLoader rosetta.basic.resource_manager.ResourceLoaderCreator(builtins.object) DatabaseSessionLoaderCreator rosetta.basic.resource_manager.ResourceOptions(builtins.object) DatabaseSessionOptions rosetta.basic.resource_manager.ResourceOptionsCreator(builtins.object) DatabaseSessionOptionsCreator   class DatabaseSessionLoader(rosetta.basic.resource_manager.ResourceLoader)       Method resolution order: DatabaseSessionLoader rosetta.basic.resource_manager.ResourceLoader builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.basic.database.DatabaseSessionLoader,  : rosetta.basic.database.DatabaseSessionLoader) -> rosetta.basic.database.DatabaseSessionLoader default_options(...) from builtins.PyCapsule default_options(rosetta.basic.database.DatabaseSessionLoader) -> rosetta.basic.resource_manager.ResourceOptions   class DatabaseSessionLoaderCreator(rosetta.basic.resource_manager.ResourceLoaderCreator)       Method resolution order: DatabaseSessionLoaderCreator rosetta.basic.resource_manager.ResourceLoaderCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.basic.database.DatabaseSessionLoaderCreator,  : rosetta.basic.database.DatabaseSessionLoaderCreator) -> rosetta.basic.database.DatabaseSessionLoaderCreator create_resource_loader(...) from builtins.PyCapsule create_resource_loader(rosetta.basic.database.DatabaseSessionLoaderCreator) -> rosetta.basic.resource_manager.ResourceLoader loader_type(...) from builtins.PyCapsule loader_type(rosetta.basic.database.DatabaseSessionLoaderCreator) -> str   class DatabaseSessionOptions(rosetta.basic.resource_manager.ResourceOptions)       Method resolution order: DatabaseSessionOptions rosetta.basic.resource_manager.ResourceOptions builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, name : str) -> NoneType   3. __init__(handle, rosetta.basic.database.DatabaseSessionOptions) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.basic.database.DatabaseSessionOptions,  : rosetta.basic.database.DatabaseSessionOptions) -> rosetta.basic.database.DatabaseSessionOptions database_session(...) from builtins.PyCapsule database_session(rosetta.basic.database.DatabaseSessionOptions) -> utility::sql_database::session parse_my_tag(...) from builtins.PyCapsule parse_my_tag(self : rosetta.basic.database.DatabaseSessionOptions,  : utility::tag::Tag) -> NoneType type(...) from builtins.PyCapsule type(rosetta.basic.database.DatabaseSessionOptions) -> str Methods inherited from rosetta.basic.resource_manager.ResourceOptions: __str__(...) from builtins.PyCapsule __str__(rosetta.basic.resource_manager.ResourceOptions) -> str name(...) from builtins.PyCapsule name(*args, **kwargs) Overloaded function.   1. name(rosetta.basic.resource_manager.ResourceOptions) -> str   A name given to a particular ResourceOptions instance.  This function allows for better error message delivery.   2. name(self : rosetta.basic.resource_manager.ResourceOptions, setting : str) -> NoneType   Set the name for this %ResoureOptions instance.   class DatabaseSessionOptionsCreator(rosetta.basic.resource_manager.ResourceOptionsCreator)       Method resolution order: DatabaseSessionOptionsCreator rosetta.basic.resource_manager.ResourceOptionsCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.basic.database.DatabaseSessionOptionsCreator,  : rosetta.basic.database.DatabaseSessionOptionsCreator) -> rosetta.basic.database.DatabaseSessionOptionsCreator create_options(...) from builtins.PyCapsule create_options(rosetta.basic.database.DatabaseSessionOptionsCreator) -> rosetta.basic.resource_manager.ResourceOptions options_type(...) from builtins.PyCapsule options_type(rosetta.basic.database.DatabaseSessionOptionsCreator) -> str

Functions
		check_statement_sanity(...) method of builtins.PyCapsule instance check_statement_sanity(sql : str) -> NoneType db_partition_from_options(...) method of builtins.PyCapsule instance db_partition_from_options(db_mode : rosetta.utility.sql_database.e) -> int   Returns partition identifer if in partitioned database mode, otherwise -1. find_cache_file(...) method of builtins.PyCapsule instance find_cache_file(cache_file : str, dir_only : bool) -> bool   Does cache file (absolute path) exist?  if dir_only is true, will return true if the cache file could be created. find_database_path(...) method of builtins.PyCapsule instance find_database_path(*args, **kwargs) Overloaded function.   1. find_database_path(dir : str, filename : str) -> str   Find a path to a file.    Try various combinations to locate the specific file being requested by the user.  (inspired by core::scoring::ScoreFunction::find_weights_file())    dir like chemical/carbohydrates/linkage_conformers/   2. find_database_path(dir : str, filename : str, ext : str) -> str   Find a path to a file.    Try various combinations to locate the specific file being requested by the user.  (inspired by core::scoring::ScoreFunction::find_weights_file())    dir like chemical/carbohydrates/linkage_conformers/ full_cache_name(...) method of builtins.PyCapsule instance full_cache_name(short_name : str, source_file : str, for_writing : bool) -> str   Get the (absolute) path to a given cached file.  If source_file is given, it's the full path to the source database file that's being cached.  If for_writing is true, will only check that the given file would be creatable.  Will return an empty string if it can't find a cache file. full_name(...) method of builtins.PyCapsule instance full_name(*args, **kwargs) Overloaded function.   1. full_name(db_file : str) -> str   Full-path database file name   2. full_name(db_file : str, warn : bool) -> str   Full-path database file name get_db_session(...) method of builtins.PyCapsule instance get_db_session(*args, **kwargs) Overloaded function.   1. get_db_session() -> rosetta.utility.sql_database.session   Aquire a database session using the command line options  transaction type is set to standard   2. get_db_session(db_name : str) -> rosetta.utility.sql_database.session   Aquire a database session using the command line parameters  For postgres databases, the pq_schema acts like a namespace in the  database. Transaction type set to standard   3. get_db_session(db_name : str, pq_schema : str) -> rosetta.utility.sql_database.session   Aquire a database session using the command line parameters  For postgres databases, the pq_schema acts like a namespace in the  database. Transaction type set to standard   4. get_db_session(db_name : str, transaction_mode : rosetta.utility.sql_database.e, chunk_size : int) -> rosetta.utility.sql_database.session   Aquire a database session using the command line parameters  For postgres databases, the pq_schema acts like a namespace in the  database   5. get_db_session(db_name : str, transaction_mode : rosetta.utility.sql_database.e, chunk_size : int, pq_schema : str) -> rosetta.utility.sql_database.session   Aquire a database session using the command line parameters  For postgres databases, the pq_schema acts like a namespace in the  database   6. get_db_session(db_mode : rosetta.utility.sql_database.e, db_name : str) -> rosetta.utility.sql_database.session   7. get_db_session(db_mode : rosetta.utility.sql_database.e, db_name : str, pq_schema : str) -> rosetta.utility.sql_database.session   8. get_db_session(db_mode : rosetta.utility.sql_database.e, transaction_mode : rosetta.utility.sql_database.e, chunk_size : int, db_name : str) -> rosetta.utility.sql_database.session   Aquire a database session using the command line parameters  For postgres databases, the pq_schema acts like a namespace in the  database   9. get_db_session(db_mode : rosetta.utility.sql_database.e, transaction_mode : rosetta.utility.sql_database.e, chunk_size : int, db_name : str, pq_schema : str) -> rosetta.utility.sql_database.session   Aquire a database session using the command line parameters  For postgres databases, the pq_schema acts like a namespace in the  database insert_or_ignore(...) method of builtins.PyCapsule instance insert_or_ignore(table_name : str, column_names : rosetta.std.vector_std_string, values : rosetta.std.vector_std_string, db_session : rosetta.utility.sql_database.session) -> NoneType make_compound_statement(...) method of builtins.PyCapsule instance make_compound_statement(table_name : str, column_names : rosetta.std.vector_std_string, row_count : int) -> str open(...) method of builtins.PyCapsule instance open(*args, **kwargs) Overloaded function.   1. open(db_stream : utility::io::izstream, db_file : str) -> bool   Open a database file on a provided stream   2. open(db_stream : utility::io::izstream, db_file : str, warn : bool) -> bool   Open a database file on a provided stream parse_database_connection(...) method of builtins.PyCapsule instance parse_database_connection(tag : utility::tag::Tag) -> rosetta.utility.sql_database.session resolve_db_partition(...) method of builtins.PyCapsule instance resolve_db_partition(*args, **kwargs) Overloaded function.   1. resolve_db_partition(partition_by_mpi_process : bool) -> int   Returns partition identifer from mpi rank if in partitioned database mode, or valid manual partition, otherwise -1.   2. resolve_db_partition(partition_by_mpi_process : bool, manual_partition : int) -> int   Returns partition identifer from mpi rank if in partitioned database mode, or valid manual partition, otherwise -1. safely_prepare_statement(...) method of builtins.PyCapsule instance safely_prepare_statement(statement_string : str, db_session : rosetta.utility.sql_database.session) -> rosetta.cppdb.statement safely_read_from_database(...) method of builtins.PyCapsule instance safely_read_from_database(statement : rosetta.cppdb.statement) -> rosetta.cppdb.result safely_write_to_database(...) method of builtins.PyCapsule instance safely_write_to_database(statement : rosetta.cppdb.statement) -> NoneType set_cache_size(...) method of builtins.PyCapsule instance set_cache_size(db_session : rosetta.utility.sql_database.session, cache_size : int) -> NoneType   set the number of 1kb pages to use for cache table_exists(...) method of builtins.PyCapsule instance table_exists(db_session : rosetta.utility.sql_database.session, table_name : str) -> bool write_schema_to_database(...) method of builtins.PyCapsule instance write_schema_to_database(schema : str, db_session : rosetta.utility.sql_database.session) -> NoneType