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# Issues from cppcheck version 1.90
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[apps/benchmark/performance/FastRelax.bench.hh:57]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[apps/benchmark/performance/InteractionGraph.bench.hh:71]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[apps/benchmark/performance/LigandDock.bench.hh:32]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[apps/benchmark/performance/OptionCollection.bench.hh:25]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[apps/benchmark/performance/pdb_io.bench.hh:29]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[apps/benchmark/performance/performance_benchmark.cc:157]: (style) The scope of the variable 't' can be reduced. [variableScope]
[apps/benchmark/performance/performance_benchmark.cc:157]: (style) Variable 't' is assigned a value that is never used. [unreadVariable]
[apps/benchmark/performance/performance_benchmark.cc:277]: (style) Variable 'all' can be declared with const [constVariable]
[apps/benchmark/performance/performance_benchmark.cc:314]: (style) Variable 'prev_results' is assigned a value that is never used. [unreadVariable]
[apps/benchmark/performance/performance_benchmark.cc:349]: (style) Variable 'all' can be declared with const [constVariable]
[apps/benchmark/performance/performance_benchmark.cc:367] -> [apps/benchmark/performance/init_util.hh:84]: (style) Local variable 'command_line_argv' shadows outer variable [shadowVariable]
[apps/benchmark/performance/performance_benchmark.cc:367] -> [apps/benchmark/performance/init_util.hh:97]: (style) Local variable 'command_line_argc' shadows outer variable [shadowVariable]
[apps/benchmark/performance/performance_benchmark.cc:367] -> [apps/benchmark/performance/init_util.hh:97]: (style) Local variable 'command_line_argv' shadows outer variable [shadowVariable]
[apps/benchmark/performance/performance_benchmark.hh:29]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[apps/benchmark/performance/ScoreAnalyticEtable.bench.hh:23]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[apps/benchmark/performance/score.bench.hh:30]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[apps/benchmark/performance/ScoreEach.bench.hh:47]: (warning) Member variable 'ScoreEachBenchmark::enmethtype_' is not initialized in the constructor. [uninitMemberVar]
[apps/benchmark/performance/ScoreEach.bench.hh:48]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[apps/benchmark/performance/ScoreEach.bench.hh:51]: (performance) Function parameter 'infile' should be passed by const reference. [passedByValue]
[apps/benchmark/performance/ShearMover.bench.hh:36]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[apps/benchmark/performance/SmallMover.bench.hh:34]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[apps/benchmark/performance/xml_parsing.bench.hh:28]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[apps/benchmark/scientific/ddg_benchmark.cc:102] -> [apps/benchmark/scientific/ddg_benchmark.cc:114]: (style) Local variable 'sum' shadows outer function [shadowFunction]
[apps/benchmark/scientific/ddg_benchmark.cc:102] -> [ObjexxFCL/FArray1.hh:658]: (style) Local variable 'sum' shadows outer function [shadowFunction]
[apps/benchmark/scientific/ddg_benchmark.cc:102] -> [ObjexxFCL/FArray2.hh:289]: (style) Local variable 'sum' shadows outer function [shadowFunction]
[apps/benchmark/scientific/ddg_benchmark.cc:102] -> [ObjexxFCL/FArray2.hh:656]: (style) Local variable 'sum' shadows outer function [shadowFunction]
[apps/benchmark/scientific/ddg_benchmark.cc:102]: (style) Parameter 'scores_to_sum' can be declared with const [constParameter]
[apps/benchmark/scientific/ddg_benchmark.cc:123]: (style) Parameter 's' can be declared with const [constParameter]
[apps/benchmark/scientific/ddg_benchmark.cc:155]: (style) Parameter 'scores_to_average' can be declared with const [constParameter]
[apps/benchmark/scientific/ddg_benchmark.cc:209]: (style) The scope of the variable 'tmp' can be reduced. [variableScope]
[apps/benchmark/scientific/ddg_benchmark.cc:219]: (warning) sscanf() without field width limits can crash with huge input data. [invalidscanf]
[apps/benchmark/scientific/ddg_benchmark.cc:231]: (warning) sscanf() without field width limits can crash with huge input data. [invalidscanf]
[apps/benchmark/scientific/ddg_benchmark.cc:338] -> [apps/benchmark/scientific/ddg_benchmark.cc:524]: (style) Local variable 'fh' shadows outer variable [shadowVariable]
[apps/benchmark/scientific/ddg_benchmark.cc:341]: (style) The scope of the variable 'averaged_wt_scores_calculated' can be reduced. [variableScope]
[apps/benchmark/scientific/ddg_benchmark.cc:375] -> [apps/benchmark/scientific/ddg_benchmark.cc:386]: (style) Condition 'dG_native_calculated' is always true [knownConditionTrueFalse]
[apps/benchmark/scientific/design_contrast_and_statistic.cc:293]: (style) Unused variable: out_path [unusedVariable]
[apps/benchmark/scientific/design_contrast_and_statistic.cc:293]: (style) Unused variable: redesign_name [unusedVariable]
[apps/public/analysis/batch_distances.cc:52]: (style) Parameter 'mypose' can be declared with const [constParameter]
[apps/public/analysis/contactMap.cc:56]: (style) Variable 'current_region' is assigned a value that is never used. [unreadVariable]
[apps/public/analysis/ensemble_analysis.cc:203] -> [apps/public/analysis/ensemble_analysis.cc:269]: (style) Local variable 'weights' shadows outer variable [shadowVariable]
[apps/public/analysis/per_residue_solvent_exposure.cc:117]: (performance) Function parameter 'pose' should be passed by const reference. [passedByValue]
[apps/public/analysis/per_residue_solvent_exposure.cc:133]: (performance) Function parameter 'pose' should be passed by const reference. [passedByValue]
[apps/public/analysis/per_residue_solvent_exposure.cc:163]: (performance) Function parameter 'pose' should be passed by const reference. [passedByValue]
[apps/public/analysis/per_residue_solvent_exposure.cc:195]: (performance) Function parameter 'pose' should be passed by const reference. [passedByValue]
[apps/public/analysis/per_residue_solvent_exposure.cc:75]: (performance) Function parameter 'pose' should be passed by const reference. [passedByValue]
[apps/public/analysis/per_residue_solvent_exposure.cc:95]: (performance) Function parameter 'pose' should be passed by const reference. [passedByValue]
[apps/public/analysis/report_hbonds_for_plugin.cc:106]: (style) Unused variable: lines [unusedVariable]
[apps/public/analysis/report_hbonds_for_plugin.cc:107]: (style) Unused variable: chains [unusedVariable]
[apps/public/analysis/report_hbonds_for_plugin.cc:84]: (performance) Variable 'scfxn' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/analysis/score_jd2.cc:112]: (performance) Variable 'sfxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/antibody/antibody.cc:308] -> [apps/public/antibody/antibody.cc:403]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[apps/public/boinc/minirosetta.cc:266]: (style) The scope of the variable 'runtime' can be reduced. [variableScope]
[apps/public/calculate_sasa.cc:97]: (style) Variable 'start_pose' is assigned a value that is never used. [unreadVariable]
[apps/public/comparative_modeling/avrg_silent.cc:100]: (style) Parameter 'crds' can be declared with const [constParameter]
[apps/public/comparative_modeling/avrg_silent.cc:440] -> [apps/public/comparative_modeling/avrg_silent.cc:477]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[apps/public/comparative_modeling/avrg_silent.cc:99]: (performance) Function parameter 'ref_pose' should be passed by const reference. [passedByValue]
[apps/public/comparative_modeling/iterhybrid_selector.cc:409] -> [apps/public/comparative_modeling/iterhybrid_selector.cc:448]: (style) Local variable 'iss' shadows outer variable [shadowVariable]
[apps/public/comparative_modeling/template_features.cc:57]: (style) Parameter 'mypose' can be declared with const [constParameter]
[apps/public/cyclic_peptide/count_cycpep_sequences.cc:253]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[apps/public/darc/DARC.cc:133] -> [apps/public/darc/DARC.cc:426]: (style) Local variable 'bound_pose' shadows outer variable [shadowVariable]
[apps/public/darc/DARC.cc:136] -> [apps/public/darc/DARC.cc:138]: (style) Expression is always true because 'else if' condition is opposite to previous condition at line 136. [multiCondition]
[apps/public/darc/DARC.cc:146] -> [apps/public/darc/DARC.cc:148]: (style) Expression is always true because 'else if' condition is opposite to previous condition at line 146. [multiCondition]
[apps/public/darc/DARC.cc:434] -> [apps/public/darc/DARC.cc:438]: (style) Expression is always true because 'else if' condition is opposite to previous condition at line 434. [multiCondition]
[apps/public/darc/make_ray_files.cc:149] -> [apps/public/darc/make_ray_files.cc:155]: (style) Condition 'inFile' is always true [knownConditionTrueFalse]
[apps/public/ddg/cartesian_ddg.cc:243]: (style) The scope of the variable 'cartmin' can be reduced. [variableScope]
[apps/public/ddg/cartesian_ddg.cc:245]: (style) Condition 'flexbb' is always true [knownConditionTrueFalse]
[apps/public/ddg/ddg_monomer.cc:142]: (style) Parameter 'pose' can be declared with const [constParameter]
[apps/public/ddg/ensemble_generator_score12_sidechain_ver2.cc:181]: (style) Parameter 's' can be declared with const [constParameter]
[apps/public/ddg/ensemble_generator_score12_sidechain_ver2.cc:253] -> [apps/public/ddg/ensemble_generator_score12_sidechain_ver2.cc:395]: (style) Local variable 's' shadows outer argument [shadowArgument]
[apps/public/ddg/ensemble_generator_score12_sidechain_ver2.cc:335]: (style) Variable 'tags_done' is assigned a value that is never used. [unreadVariable]
[apps/public/ddg/minimize_with_cst.cc:175]: (style) Parameter 's' can be declared with const [constParameter]
[apps/public/ddg/minimize_with_cst.cc:183] -> [apps/public/ddg/minimize_with_cst.cc:275]: (style) Local variable 'opts' shadows outer variable [shadowVariable]
[apps/public/design/supercharge.cc:1130] -> [apps/public/design/supercharge.cc:1250]: (style) Local variable 'diff_total' shadows outer variable [shadowVariable]
[apps/public/design/supercharge.cc:1131] -> [apps/public/design/supercharge.cc:1251]: (style) Local variable 'diff_fa_atr' shadows outer variable [shadowVariable]
[apps/public/design/supercharge.cc:1132] -> [apps/public/design/supercharge.cc:1252]: (style) Local variable 'diff_fa_rep' shadows outer variable [shadowVariable]
[apps/public/design/supercharge.cc:1133] -> [apps/public/design/supercharge.cc:1253]: (style) Local variable 'diff_fa_sol' shadows outer variable [shadowVariable]
[apps/public/design/supercharge.cc:1134] -> [apps/public/design/supercharge.cc:1254]: (style) Local variable 'diff_fa_intra_sol_xover4' shadows outer variable [shadowVariable]
[apps/public/design/supercharge.cc:1135] -> [apps/public/design/supercharge.cc:1255]: (style) Local variable 'diff_lk_ball_wtd' shadows outer variable [shadowVariable]
[apps/public/design/supercharge.cc:1136] -> [apps/public/design/supercharge.cc:1256]: (style) Local variable 'diff_fa_intra_rep' shadows outer variable [shadowVariable]
[apps/public/design/supercharge.cc:1137] -> [apps/public/design/supercharge.cc:1257]: (style) Local variable 'diff_fa_elec' shadows outer variable [shadowVariable]
[apps/public/design/supercharge.cc:1138] -> [apps/public/design/supercharge.cc:1258]: (style) Local variable 'diff_pro_close' shadows outer variable [shadowVariable]
[apps/public/design/supercharge.cc:1139] -> [apps/public/design/supercharge.cc:1259]: (style) Local variable 'diff_hbond_sr_bb' shadows outer variable [shadowVariable]
[apps/public/design/supercharge.cc:1140] -> [apps/public/design/supercharge.cc:1260]: (style) Local variable 'diff_hbond_lr_bb' shadows outer variable [shadowVariable]
[apps/public/design/supercharge.cc:1141] -> [apps/public/design/supercharge.cc:1261]: (style) Local variable 'diff_hbond_bb_sc' shadows outer variable [shadowVariable]
[apps/public/design/supercharge.cc:1142] -> [apps/public/design/supercharge.cc:1262]: (style) Local variable 'diff_hbond_sc' shadows outer variable [shadowVariable]
[apps/public/design/supercharge.cc:1143] -> [apps/public/design/supercharge.cc:1263]: (style) Local variable 'diff_dslf_fa13' shadows outer variable [shadowVariable]
[apps/public/design/supercharge.cc:1144] -> [apps/public/design/supercharge.cc:1264]: (style) Local variable 'diff_rama_prepro' shadows outer variable [shadowVariable]
[apps/public/design/supercharge.cc:1145] -> [apps/public/design/supercharge.cc:1265]: (style) Local variable 'diff_omega' shadows outer variable [shadowVariable]
[apps/public/design/supercharge.cc:1146] -> [apps/public/design/supercharge.cc:1266]: (style) Local variable 'diff_fa_dun' shadows outer variable [shadowVariable]
[apps/public/design/supercharge.cc:1147] -> [apps/public/design/supercharge.cc:1267]: (style) Local variable 'diff_p_aa_pp' shadows outer variable [shadowVariable]
[apps/public/design/supercharge.cc:1149] -> [apps/public/design/supercharge.cc:1269]: (style) Local variable 'diff_ref' shadows outer variable [shadowVariable]
[apps/public/design/supercharge.cc:574] -> [apps/public/design/supercharge.cc:617]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[apps/public/design/zinc1_homodimer_design.cc:196]: (style) Variable 'constraints_adder' is assigned a value that is never used. [unreadVariable]
[apps/public/DRRAFTER/drrafter_error_estimation.cc:151] -> [apps/public/DRRAFTER/drrafter_error_estimation.cc:163]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[apps/public/electron_density/denovo_density.cc:1081] -> [apps/public/electron_density/denovo_density.cc:1101]: (style) Local variable 'nres' shadows outer variable [shadowVariable]
[apps/public/electron_density/denovo_density.cc:1282]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[apps/public/electron_density/denovo_density.cc:1294]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[apps/public/electron_density/denovo_density.cc:1382]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[apps/public/electron_density/denovo_density.cc:1395]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[apps/public/electron_density/denovo_density.cc:1406]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[apps/public/electron_density/denovo_density.cc:1435]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[apps/public/electron_density/denovo_density.cc:1454]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[apps/public/electron_density/denovo_density.cc:179]: (performance) Variable 'dens_score_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/electron_density/denovo_density.cc:180]: (performance) Variable 'rms_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/electron_density/denovo_density.cc:181]: (performance) Variable 'tag_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/electron_density/denovo_density.cc:182]: (performance) Variable 'idx_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/electron_density/denovo_density.cc:206]: (performance) Variable 'tag_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/electron_density/denovo_density.cc:693]: (performance) Variable 'steepness_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/electron_density/denovo_density.cc:694]: (performance) Variable 'overlap_width_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/electron_density/denovo_density.cc:695]: (performance) Variable 'clash_dist_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/electron_density/denovo_density.cc:696]: (performance) Variable 'unclosable_penalty_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/electron_density/denovo_density.cc:945]: (performance) Variable 'overlap_wt_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/electron_density/denovo_density.cc:946]: (performance) Variable 'clash_wt_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/electron_density/denovo_density.cc:947]: (performance) Variable 'close_wt_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/electron_density/denovo_density.cc:948]: (performance) Variable 'dens_wt_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/electron_density/density_tools.cc:372]: (style) Variable 'rsd_set' is assigned a value that is never used. [unreadVariable]
[apps/public/interface_design/anchored_design/AnchorFinder.cc:68] -> [apps/public/interface_design/anchored_design/AnchorFinder.cc:168]: (style) Local variable 'loopness' shadows outer variable [shadowVariable]
[apps/public/legacy_sewing/sewing_hasher.cc:414] -> [apps/public/legacy_sewing/sewing_hasher.cc:443]: (style) Local variable 'it_end' shadows outer variable [shadowVariable]
[apps/public/legacy_sewing/sewing_hasher.cc:415] -> [apps/public/legacy_sewing/sewing_hasher.cc:444]: (style) Local variable 'it2' shadows outer variable [shadowVariable]
[apps/public/legacy_sewing/sewing_hasher.cc:71] -> [apps/public/legacy_sewing/sewing_hasher.cc:187]: (style) Local variable 'models' shadows outer variable [shadowVariable]
[apps/public/ligand_docking/extract_atomtree_diffs.cc:66]: (performance) Variable 'scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/match/gen_apo_grids.cc:103]: (style) Parameter 'in' can be declared with const [constParameter]
[apps/public/match/gen_apo_grids.cc:276]: (style) Condition 'lj_use_lj_deriv_slope' is always true [knownConditionTrueFalse]
[apps/public/match/gen_apo_grids.cc:93]: (style) Parameter 'in' can be declared with const [constParameter]
[apps/public/match/gen_lig_grids.cc:143]: (style) Condition 'boxflag' is always true [knownConditionTrueFalse]
[apps/public/match/gen_lig_grids.cc:72]: (style) Parameter 'in' can be declared with const [constParameter]
[apps/public/match/gen_lig_grids.cc:81]: (style) Parameter 'in' can be declared with const [constParameter]
[apps/public/membrane/helix_from_sequence.cc:153] -> [apps/public/membrane/helix_from_sequence.cc:193]: (style) Local variable 'opt' shadows outer variable [shadowVariable]
[apps/public/membrane/mp_domain_assembly.cc:629] -> [apps/public/membrane/mp_domain_assembly.cc:800]: (style) Local variable 'addmem' shadows outer variable [shadowVariable]
[apps/public/membrane/mp_seqrecov.cc:389]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[apps/public/membrane/mp_seqrecov.cc:581]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[apps/public/membrane/mp_seqrecov.cc:98]: (performance) Function parameter 'exe' should be passed by const reference. [passedByValue]
[apps/public/membrane/mp_span_from_pdb.cc:113]: (style) Parameter 'pose' can be declared with const [constParameter]
[apps/public/motif_dock/make_motif_tables.cc:190] -> [apps/public/motif_dock/make_motif_tables.cc:207]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[apps/public/motif_dock/make_motif_tables.cc:190] -> [apps/public/motif_dock/make_motif_tables.cc:241]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[apps/public/motif_dock/make_motif_tables.cc:190] -> [apps/public/motif_dock/make_motif_tables.cc:246]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[apps/public/motif_dock/make_motif_tables.cc:310]: (style) Variable 'xscoremap_joint' can be declared with const [constVariable]
[apps/public/motif_dock/make_motif_tables.cc:344]: (style) Parameter 'dssp' can be declared with const [constParameter]
[apps/public/motif_dock/make_motif_tables.cc:437]: (style) The scope of the variable 'header' can be reduced. [variableScope]
[apps/public/motif_tools/extract_motifs.cc:187]: (style) Parameter 'pdb_name' can be declared with const [constParameter]
[apps/public/motif_tools/extract_motifs.cc:189]: (style) Parameter 'contacts' can be declared with const [constParameter]
[apps/public/packstat.cc:294] -> [apps/public/packstat.cc:298]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[apps/public/pepspec/pepspec_anchor_dock.cc:961] -> [apps/public/pepspec/pepspec_anchor_dock.cc:962]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[apps/public/pepspec/pepspec_anchor_dock.cc:989] -> [apps/public/pepspec/pepspec_anchor_dock.cc:990]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[apps/public/pepspec/pepspec.cc:1504] -> [apps/public/pepspec/pepspec.cc:1785]: (style) Local variable 'pdb_name' shadows outer variable [shadowVariable]
[apps/public/pepspec/pepspec.cc:232]: (performance) Variable 'last_pose_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/pepspec/pepspec.cc:233]: (performance) Variable 'last_score_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/pepspec/pepspec.cc:234]: (performance) Variable 'low_pose_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/pepspec/pepspec.cc:235]: (performance) Variable 'low_score_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/pepspec/pepspec.cc:236]: (performance) Variable 'temp_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/pepspec/pepspec.cc:716]: (performance) Function parameter 'pose' should be passed by const reference. [passedByValue]
[apps/public/pH_protocol.cc:231]: (style) Parameter 'pose' can be declared with const [constParameter]
[apps/public/pH_protocol.cc:372]: (style) Unused variable: PKA_LIST [unusedVariable]
[apps/public/pocket/pocket_suggest_target_residues_by_ddg.cc:183]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[apps/public/rna/erraser/erraser2.cc:468] -> [apps/public/rna/erraser/erraser2.cc:476]: (style) The expression 'nproc > 1' is always false. [knownConditionTrueFalse]
[apps/public/rna/erraser/erraser2.cc:468] -> [apps/public/rna/erraser/erraser2.cc:482]: (style) The expression 'nproc == 1' is always true. [knownConditionTrueFalse]
[apps/public/rna/rna_denovo.cc:238]: (style) Variable 'lores_silent_file_' is assigned a value that is never used. [unreadVariable]
[apps/public/rna/rna_denovo.cc:240]: (style) Variable 'tag_is_done_' is assigned a value that is never used. [unreadVariable]
[apps/public/rna/rna_denovo.cc:267]: (style) Variable 'silent_file' is assigned a value that is never used. [unreadVariable]
[apps/public/rna/rna_denovo.cc:293]: (style) Variable 'refine_pose_id' is assigned a value that is never used. [unreadVariable]
[apps/public/rna/rna_denovo.cc:353]: (style) Parameter 'pose' can be declared with const [constParameter]
[apps/public/rna/rna_denovo.cc:382]: (style) Parameter 'silent_file_data' can be declared with const [constParameter]
[apps/public/rna/rna_denovo.cc:502] -> [apps/public/rna/rna_denovo.cc:236]: (style) Local variable 'lores_silent_file_' shadows outer variable [shadowVariable]
[apps/public/rna/rna_denovo.cc:506] -> [apps/public/rna/rna_denovo.cc:240]: (style) Local variable 'tag_is_done_' shadows outer variable [shadowVariable]
[apps/public/rna/rna_design.cc:276]: (style) Variable 'start_pose' is assigned a value that is never used. [unreadVariable]
[apps/public/rna/util/rna_database.cc:145]: (style) Variable 'rna_centroid_info' can be declared with const [constVariable]
[apps/public/rna/util/rna_database.cc:606]: (style) Variable 'exclude_res_list' is assigned a value that is never used. [unreadVariable]
[apps/public/rna/util/rna_predict_chem_map.cc:228] -> [apps/public/rna/util/rna_predict_chem_map.cc:250]: (style) Local variable 'n' shadows outer variable [shadowVariable]
[apps/public/rna/util/rna_predict_chem_map.cc:228] -> [apps/public/rna/util/rna_predict_chem_map.cc:258]: (style) Local variable 'n' shadows outer variable [shadowVariable]
[apps/public/rna/util/rna_predict_chem_map.cc:228] -> [apps/public/rna/util/rna_predict_chem_map.cc:273]: (style) Local variable 'n' shadows outer variable [shadowVariable]
[apps/public/rna/util/rna_score.cc:349]: (performance) Variable 'sfxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/rnp_ddg/rnp_ddg.cc:885]: (style) Parameter 'pose' can be declared with const [constParameter]
[apps/public/rnp_ddg/rnp_ddg.cc:911]: (style) Parameter 'sfxn' can be declared with const [constParameter]
[apps/public/scenarios/beta_strand_homodimer_design/exposed_strand_finder.cc:180]: (performance) Variable 'beta_length_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/scenarios/beta_strand_homodimer_design/exposed_strand_finder.cc:181]: (performance) Variable 'sat_allow_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/scenarios/beta_strand_homodimer_design/exposed_strand_finder.cc:184]: (performance) Variable 'scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/scenarios/beta_strand_homodimer_design/homodimer_design.cc:178]: (performance) Variable 'scorefxn_a' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/scenarios/beta_strand_homodimer_design/homodimer_design.cc:362]: (style) Parameter 'pose' can be declared with const [constParameter]
[apps/public/scenarios/beta_strand_homodimer_design/homodimer_maker.cc:101] -> [apps/public/scenarios/beta_strand_homodimer_design/homodimer_maker.cc:291]: (style) Local variable 'sheet_start' shadows outer variable [shadowVariable]
[apps/public/scenarios/beta_strand_homodimer_design/homodimer_maker.cc:153]: (performance) Variable 'scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/scenarios/ca_to_allatom.cc:151]: (performance) Variable 'scorefxn_cst_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/scenarios/chemically_conjugated_docking/UBQ_E2_thioester.cc:140]: (performance) Variable 'fullatom_scorefunction_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/scenarios/chemically_conjugated_docking/UBQ_Gp_CYD-CYD.cc:119]: (performance) Variable 'fullatom_scorefunction_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/sewing/ligand_sewing_tools/backside_hbond_finder.cc:152]: (performance) Variable 'scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/sewing/ligand_sewing_tools/backside_hbond_finder.cc:88]: (performance) Function parameter 'a2' should be passed by const reference. [passedByValue]
[apps/public/sewing/ligand_sewing_tools/backside_hbond_finder.cc:89]: (performance) Variable 'resnum' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/sewing/ligand_sewing_tools/backside_hbond_finder.cc:90]: (performance) Variable 'residue_type' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/sewing/ligand_sewing_tools/backside_hbond_finder.cc:91]: (performance) Variable 'chi_angles' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/sewing/ligand_sewing_tools/backside_hbond_finder.cc:92]: (performance) Variable 'hbond_score' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/sewing/ligand_sewing_tools/generate_starting_zinc_sites.cc:188] -> [apps/public/sewing/ligand_sewing_tools/generate_starting_zinc_sites.cc:198]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[apps/public/sewing/ligand_sewing_tools/generate_starting_zinc_sites.cc:188] -> [apps/public/sewing/ligand_sewing_tools/generate_starting_zinc_sites.cc:202]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[apps/public/sewing/ligand_sewing_tools/metal_site_finder.cc:370] -> [apps/public/sewing/ligand_sewing_tools/metal_site_finder.cc:375]: (warning) Opposite inner 'if' condition leads to a dead code block. [oppositeInnerCondition]
[apps/public/sewing/ligand_sewing_tools/zinc_statistic_generator.cc:293]: (style) Variable 'cd2_coords' is assigned a value that is never used. [unreadVariable]
[apps/public/sewing/segment_file_generator.cc:116]: (performance) Function parameter 'bad_motif' should be passed by const reference. [passedByValue]
[apps/public/sewing/segment_file_generator.cc:116]: (performance) Function parameter 'error_msg' should be passed by const reference. [passedByValue]
[apps/public/sewing/segment_file_generator.cc:121]: (performance) Function parameter 'motif' should be passed by const reference. [passedByValue]
[apps/public/sewing/segment_file_generator.cc:159]: (error) Out of bounds access of motif_string, index 'motif_string.size()' is out of bounds. [containerOutOfBoundsIndexExpression]
[apps/public/sewing/segment_file_generator.cc:232]: (performance) Function parameter 'copy_set' should be passed by const reference. [passedByValue]
[apps/public/sewing/segment_file_generator.cc:241]: (performance) Function parameter 'motif_dssp' should be passed by const reference. [passedByValue]
[apps/public/sewing/segment_file_generator.cc:241]: (performance) Function parameter 'segment_dssp' should be passed by const reference. [passedByValue]
[apps/public/sewing/segment_file_generator.cc:54] -> [apps/public/sewing/segment_file_generator.cc:87]: (style) Local variable 'motif_file' shadows outer variable [shadowVariable]
[apps/public/sewing/segment_file_generator.hh:51]: (performance) Function parameter 'dssp' should be passed by const reference. [passedByValue]
[apps/public/sewing/segment_file_generator.hh:63]: (performance) Function parameter 'abv_motif_string' should be passed by const reference. [passedByValue]
[apps/public/sewing/segment_file_generator.hh:63]: (performance) Function parameter 'motif_string' should be passed by const reference. [passedByValue]
[apps/public/stepwise/legacy/swa_protein_main.cc:376] -> [apps/public/stepwise/legacy/swa_protein_main.cc:396]: (style) Local variable 'pose_op' shadows outer variable [shadowVariable]
[apps/public/stepwise/legacy/swa_rna_main.cc:433]: (style) Variable 'rsd_set' is assigned a value that is never used. [unreadVariable]
[apps/public/stepwise/legacy/swa_rna_main.cc:488]: (style) Variable 'rsd_set' is assigned a value that is never used. [unreadVariable]
[apps/public/stepwise/legacy/swa_rna_main.cc:566]: (style) Variable 'rsd_set' is assigned a value that is never used. [unreadVariable]
[apps/public/stepwise/legacy/swa_rna_main.cc:609] -> [apps/public/stepwise/legacy/swa_rna_main.cc:610]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[apps/public/stepwise/legacy/swa_rna_util.cc:1267]: (style) Condition 'is_very_far_from_each_other==true' is always false [knownConditionTrueFalse]
[apps/public/stepwise/legacy/swa_rna_util.cc:1271]: (style) Condition 'is_very_far_from_each_other==true' is always false [knownConditionTrueFalse]
[apps/public/stepwise/legacy/swa_rna_util.cc:586]: (style) Variable 'rsd_set' is assigned a value that is never used. [unreadVariable]
[apps/public/stepwise/stepwise.cc:245] -> [apps/public/stepwise/stepwise.cc:209]: (style) Local variable 'stepwise_monte_carlo' shadows outer function [shadowFunction]
[apps/public/stepwise/stepwise.cc:245] -> [apps/public/stepwise/stepwise.cc:320]: (style) Local variable 'stepwise_monte_carlo' shadows outer function [shadowFunction]
[apps/public/weight_optimization/torsional_potential_corrections.cc:165]: (performance) Variable 'id_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/weight_optimization/torsional_potential_corrections.cc:167]: (performance) Variable 'phibin_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/weight_optimization/torsional_potential_corrections.cc:168]: (performance) Variable 'psibin_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/weight_optimization/torsional_potential_corrections.cc:169]: (performance) Variable 'rotidx_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/weight_optimization/torsional_potential_corrections.cc:171]: (performance) Variable 'weight_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/weight_optimization/torsional_potential_corrections.cc:172]: (performance) Variable 'fragscore_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[apps/public/weight_optimization/torsional_potential_corrections.cc:213]: (style) Parameter 'data' can be declared with const [constParameter]
[basic/database/insert_statement_generator/InsertGenerator.cc:109]: (style) Variable 'row_end_index' is assigned a value that is never used. [unreadVariable]
[basic/database/sql_utils.cc:978]: (style) Parameter 'attlist' can be declared with const [constParameter]
[basic/Emitter.hh:223] -> [basic/Emitter.hh:272]: (warning) Virtual function 'start_raw' is called from constructor 'YamlEmitter(std::ostream&out)' at line 223. Dynamic binding is not used. [virtualCallInConstructor]
[basic/Emitter.hh:341] -> [basic/Emitter.hh:384]: (warning) Virtual function 'start_raw' is called from constructor 'JsonEmitter(std::ostream&out)' at line 341. Dynamic binding is not used. [virtualCallInConstructor]
[basic/random/init_random_generator.cc:104]: (style) Condition '!on_windows_platform' is always true [knownConditionTrueFalse]
[basic/random/RandomGeneratorSettings.cc:58]: (style) Parameter 'opt_keys' can be declared with const [constParameter]
[basic/report.hh:60]: (performance) Variable 'report_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[basic/sampling/orientations/QuaternionGrid.hh:192]: (performance) Function parameter '_name' should be passed by const reference. [passedByValue]
[basic/svd/SVD_Solver.cc:169]: (performance) Variable 'M_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[basic/svd/SVD_Solver.cc:170]: (performance) Variable 'N_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[basic/thread_manager/RosettaThreadManager.cc:319]: (style) Parameter 'function_to_execute' can be declared with const [constParameter]
[basic/Tracer.hh:172]: (style) Parameter 'entry' can be declared with const [constParameter]
[basic/Tracer.hh:257]: (performance) Function parameter 'b' should be passed by const reference. [passedByValue]
[basic/Tracer.hh:85]: (style) Parameter 'entry' can be declared with const [constParameter]
[core/chemical/AtomTypeSet.cc:222]: (performance) Inefficient usage of string::find() in condition; string::starts_with() could be faster. [stlIfStrFind]
[core/chemical/AtomTypeSet.cc:380]: (performance) Inefficient usage of string::find() in condition; string::starts_with() could be faster. [stlIfStrFind]
[core/chemical/AtomTypeSet.cc:108]: (performance) Variable 'directory_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/chemical/AtomTypeSet.cc:99]: (performance) Variable 'name_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/chemical/carbohydrates/CarbohydrateInfo.cc:62]: (performance) Variable 'residue_type_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/chemical/gasteiger/GasteigerAtomTypeData.cc:191]: (performance) Variable 'element_type_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/chemical/GlobalResidueTypeSet.cc:773]: (performance) Inefficient usage of string::find() in condition; string::starts_with() could be faster. [stlIfStrFind]
[core/chemical/GlobalResidueTypeSet.cc:855]: (style) The scope of the variable 'warned_about_missing_file' can be reduced. [variableScope]
[core/chemical/IdealBondLengthSet.cc:139]: (performance) Inefficient usage of string::find() in condition; string::starts_with() could be faster. [stlIfStrFind]
[core/chemical/MMAtomTypeSet.cc:92]: (performance) Inefficient usage of string::find() in condition; string::starts_with() could be faster. [stlIfStrFind]
[core/chemical/orbitals/OrbitalTypeSet.cc:112]: (performance) Inefficient usage of string::find() in condition; string::starts_with() could be faster. [stlIfStrFind]
[core/chemical/ResidueSubGraphTypes.hh:58]: (error) Syntax Error: AST broken, 'for' doesn't have two operands. [internalAstError]
[core/chemical/residue_support.cc:216]: (style) Variable 'rings' is assigned a value that is never used. [unreadVariable]
[core/chemical/ResidueType.cc:1343]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[core/chemical/ResidueType.cc:1348]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[core/chemical/ResidueType.cc:1361]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[core/chemical/ResidueTypeSelector.hh:576]: (performance) Function parameter 'property' should be passed by const reference. [passedByValue]
[core/chemical/rna/util.cc:1069]: (style) Expression is always false because 'else if' condition matches previous condition at line 1041. [multiCondition]
[core/chemical/rna/util.cc:1073]: (style) Expression is always false because 'else if' condition matches previous condition at line 1045. [multiCondition]
[core/chemical/rna/util.cc:1077]: (style) Expression is always false because 'else if' condition matches previous condition at line 1049. [multiCondition]
[core/chemical/rna/util.cc:1081]: (style) Expression is always false because 'else if' condition matches previous condition at line 1053. [multiCondition]
[core/chemical/rna/util.cc:632]: (style) Expression is always false because 'else if' condition matches previous condition at line 628. [multiCondition]
[core/chemical/sdf/MolFileIOData.cc:642]: (performance) Function parameter 'label' should be passed by const reference. [passedByValue]
[core/chemical/sdf/MolFileIOData.hh:147]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[core/chemical/sdf/MolFileIOReader.cc:71] -> [core/chemical/sdf/MolFileIOReader.cc:82]: (style) Condition 'M_END_line' is always false [knownConditionTrueFalse]
[core/chemical/sdf/MolFileIOReader.cc:71] -> [core/chemical/sdf/MolFileIOReader.cc:87]: (style) Condition 'M_END_line' is always false [knownConditionTrueFalse]
[core/chemical/sdf/MolFileIOReader.cc:76] -> [core/chemical/sdf/MolFileIOReader.cc:82]: (style) Condition 'Tripos_line' is always false [knownConditionTrueFalse]
[core/chemical/sdf/MolFileIOReader.cc:76] -> [core/chemical/sdf/MolFileIOReader.cc:87]: (style) Condition 'Tripos_line' is always false [knownConditionTrueFalse]
[core/chemical/sdf/mol_util.cc:26]: (performance) Variable 'bondType' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/conformation/carbohydrates/GlycanNode.cc:54]: (warning) Member variable 'GlycanNode::has_exocyclic_linkage_' is not initialized in the constructor. [uninitMemberVar]
[core/conformation/carbohydrates/GlycanTreeSetObserver.cc:119]: (style) Parameter 'conf' can be declared with const [constParameter]
[core/conformation/Conformation.cc:1048] -> [core/conformation/Conformation.cc:1049]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[core/conformation/Conformation.cc:1049] -> [core/conformation/Conformation.cc:1050]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[core/conformation/Conformation.cc:164] -> [core/conformation/Conformation.cc:163]: (style) The statement 'if (membrane_info_!=nullptr) membrane_info_=nullptr' is logically equivalent to 'membrane_info_=nullptr'. [duplicateConditionalAssign]
[core/conformation/Conformation.cc:3728]: (style) The scope of the variable 'dof_m' can be reduced. [variableScope]
[core/conformation/membrane/ImplicitLipidInfo.cc:498]: (performance) Inefficient usage of string::find() in condition; string::starts_with() could be faster. [stlIfStrFind]
[core/conformation/membrane/ImplicitLipidInfo.cc:499]: (performance) Inefficient usage of string::find() in condition; string::starts_with() could be faster. [stlIfStrFind]
[core/conformation/membrane/ImplicitLipidInfo.cc:92]: (performance) Function parameter 'lipid_composition_name' should be passed by const reference. [passedByValue]
[core/conformation/membrane/SpanningTopology.cc:335]: (warning) Iterators to containers from different expressions 'topology_[i-1]' and 'topology_[i]' are used together. [mismatchingContainerExpression]
[core/conformation/parametric/ParametersSet.cc:104]: (style) Parameter 'new_conf' can be declared with const [constParameter]
[core/conformation/parametric/RealValuedParameter.cc:338]: (style) Parameter 'xsd' can be declared with const [constParameter]
[core/conformation/parametric/RealValuedParameter.cc:349]: (style) Parameter 'xsd' can be declared with const [constParameter]
[core/conformation/parametric/RealValuedParameter.cc:360]: (style) Parameter 'xsd' can be declared with const [constParameter]
[core/conformation/parametric/RealValuedParameter.cc:369]: (style) Parameter 'xsd' can be declared with const [constParameter]
[core/conformation/Residue.cc:1262]: (style) The scope of the variable 'progress' can be reduced. [variableScope]
[core/conformation/Residue.cc:1262]: (style) Variable 'progress' is assigned a value that is never used. [unreadVariable]
[core/conformation/Residue.cc:871]: (style) Variable 'cterm_residue' is assigned a value that is never used. [unreadVariable]
[core/conformation/Residue.hh:1032] -> [core/conformation/Residue.hh:1111]: (style) Local variable 'atoms_with_orb_index' shadows outer function [shadowFunction]
[core/conformation/symmetry/MirrorSymmetricConformation.cc:459]: (warning) Assert statement calls a function which may have desired side effects: 'Symmetry_Info'. [assertWithSideEffect]
[core/conformation/symmetry/SymmetricConformation.cc:77]: (performance) Variable 'symm_info_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/conformation/symmetry/SymmetryInfo.cc:101]: (style) Variable 'fail' is assigned a value that is never used. [unreadVariable]
[core/conformation/symmetry/SymmetryInfo.cc:111]: (style) Variable 'fail' is assigned a value that is never used. [unreadVariable]
[core/conformation/symmetry/SymmetryInfo.cc:143]: (style) Variable 'fail' is assigned a value that is never used. [unreadVariable]
[core/conformation/symmetry/SymmetryInfo.cc:151]: (style) Variable 'fail' is assigned a value that is never used. [unreadVariable]
[core/conformation/symmetry/SymmetryInfo.cc:186]: (style) Variable 'fail' is assigned a value that is never used. [unreadVariable]
[core/conformation/symmetry/SymmetryInfo.cc:194]: (style) Variable 'fail' is assigned a value that is never used. [unreadVariable]
[core/conformation/symmetry/SymmetryInfo.cc:891]: (style) Condition 'warned' is always false [knownConditionTrueFalse]
[core/conformation/symmetry/SymmetryInfo.cc:928]: (style) Condition 'warned' is always false [knownConditionTrueFalse]
[core/conformation/symmetry/SymmetryInfo.cc:93]: (style) Variable 'fail' is assigned a value that is never used. [unreadVariable]
[core/conformation/symmetry/SymSlideInfo.cc:58]: (performance) Function parameter 'SlideCriteriaVal' should be passed by const reference. [passedByValue]
[core/conformation/symmetry/SymSlideInfo.cc:63]: (performance) Function parameter 'slide_order' should be passed by const reference. [passedByValue]
[core/conformation/symmetry/util.cc:226]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[core/conformation/symmetry/util.cc:449]: (style) Parameter 'src_conformation' can be declared with const [constParameter]
[core/conformation/symmetry/util.cc:450]: (style) Parameter 'symmdata' can be declared with const [constParameter]
[core/conformation/symmetry/util.cc:804]: (style) Variable 'f_new' is assigned a value that is never used. [unreadVariable]
[core/conformation/symmetry/util.cc:830]: (style) Parameter 'symmdata' can be declared with const [constParameter]
[core/conformation/UltraLightResidue.cc:30]: (performance) Variable 'residue_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/conformation/util.cc:346] -> [core/conformation/util.cc:356]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[core/energy_methods/AACompositionEnergy.cc:87]: (performance) Variable 'setup_helpers_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/AromaticBackboneRestraintEnergy.cc:205]: (style) Variable 'phi0' is assigned a value that is never used. [unreadVariable]
[core/energy_methods/CartesianBondedEnergy.cc:1451]: (style) Unused variable: iter [unusedVariable]
[core/energy_methods/CartesianBondedEnergy.cc:3588]: (style) Same expression on both sides of '&&'. [duplicateExpression]
[core/energy_methods/CartesianBondedEnergy.cc:4001] -> [core/energy_methods/CartesianBondedEnergy.cc:4050]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[core/energy_methods/CartesianBondedEnergy.cc:4341]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[core/energy_methods/D2H_SA_Energy.cc:196]: (style) Variable 'pdb_info' is assigned a value that is never used. [unreadVariable]
[core/energy_methods/D2H_SA_Energy.cc:73]: (performance) Variable 'chain_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/D2H_SA_Energy.cc:74]: (performance) Variable 'rsa_index_start_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/D2H_SA_Energy.cc:75]: (performance) Variable 'rsa_index_end_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/D2H_SA_Energy.cc:76]: (performance) Variable 'reweight_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/ElecDensAllAtomCenEnergy.cc:86]: (warning) Member variable 'ElecDensAllAtomCenEnergy::nreses' is not initialized in the constructor. [uninitMemberVar]
[core/energy_methods/ElecDensAllAtomCenEnergy.cc:86]: (warning) Member variable 'ElecDensAllAtomCenEnergy::pose_is_proper' is not initialized in the constructor. [uninitMemberVar]
[core/energy_methods/ElecDensAtomwiseEnergy.cc:72]: (warning) Member variable 'ElecDensAtomwiseEnergy::pose_is_proper' is not initialized in the constructor. [uninitMemberVar]
[core/energy_methods/ElecDensCenEnergy.cc:86]: (warning) Member variable 'ElecDensCenEnergy::nreses' is not initialized in the constructor. [uninitMemberVar]
[core/energy_methods/ElecDensCenEnergy.cc:86]: (warning) Member variable 'ElecDensCenEnergy::pose_is_proper' is not initialized in the constructor. [uninitMemberVar]
[core/energy_methods/ElecDensEnergy.cc:91]: (warning) Member variable 'ElecDensEnergy::pose_is_proper' is not initialized in the constructor. [uninitMemberVar]
[core/energy_methods/ExactOccludedHbondSolEnergy.cc:135]: (performance) Variable 'xnum_points_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/ExactOccludedHbondSolEnergy.cc:136]: (performance) Variable 'ynum_points_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/ExactOccludedHbondSolEnergy.cc:137]: (performance) Variable 'znum_points_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/ExactOccludedHbondSolEnergy.cc:146]: (performance) Variable 'zorigin_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/ExactOccludedHbondSolEnergy.cc:920]: (style) Condition '!hydrogens_can_occlude' is always true [knownConditionTrueFalse]
[core/energy_methods/FACTSEnergy.cc:76]: (performance) Variable 'max_dis_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/FA_GrpElecEnergy.cc:428]: (style) Variable 'count_pair' is assigned a value that is never used. [unreadVariable]
[core/energy_methods/FA_GrpElecEnergy.cc:736]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/energy_methods/FA_GrpElecEnergy.cc:839]: (style) Variable 'neighs' is assigned a value that is never used. [unreadVariable]
[core/energy_methods/Fa_MbsolvEnergy.cc:131]: (style) The scope of the variable 'no_fa_sol' can be reduced. [variableScope]
[core/energy_methods/Fa_MbsolvEnergy.cc:246]: (style) Parameter 'debug' can be declared with const [constParameter]
[core/energy_methods/Fa_MbsolvEnergy.cc:452]: (style) The scope of the variable 'no_fa_sol' can be reduced. [variableScope]
[core/energy_methods/FaMPEnvEnergy.cc:306]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/energy_methods/FaMPSolvEnergy.cc:478]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/energy_methods/FastDensEnergy.cc:286]: (style) Variable 'nres_per' is assigned a value that is never used. [unreadVariable]
[core/energy_methods/FastDensEnergy.cc:95]: (performance) Variable 'sc_scale_byres_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/FastSAXSEnergy.cc:575]: (style) Parameter 'q_in' can be declared with const [constParameter]
[core/energy_methods/FiberDiffractionEnergy.cc:561]: (style) Variable 'X' is assigned a value that is never used. [unreadVariable]
[core/energy_methods/FiberDiffractionEnergy.cc:86]: (performance) Variable 'chi2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/FiberDiffractionEnergyDens.cc:202]: (style) Variable 'lsum' is assigned a value that is never used. [unreadVariable]
[core/energy_methods/FiberDiffractionEnergyDens.cc:218]: (style) Variable 'lsum' is assigned a value that is never used. [unreadVariable]
[core/energy_methods/FiberDiffractionEnergyDens.cc:481]: (style) Parameter 'max_r_value' can be declared with const [constParameter]
[core/energy_methods/FiberDiffractionEnergyDens.cc:482]: (style) Parameter 'qfht_K1' can be declared with const [constParameter]
[core/energy_methods/FiberDiffractionEnergyDens.cc:483]: (style) Parameter 'qfht_K2' can be declared with const [constParameter]
[core/energy_methods/FiberDiffractionEnergyDens.cc:484]: (style) Parameter 'Gnl' can be declared with const [constParameter]
[core/energy_methods/FiberDiffractionEnergyDens.cc:96]: (performance) Variable 'chi2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/LinearBranchEnergy.cc:57]: (performance) Variable 'allowable_sequence_sep_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/LinearChainbreakEnergy.cc:65]: (performance) Variable 'allowable_sequence_sep_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/LK_hack.cc:276]: (style) Variable 'cp_weight' is assigned a value that is never used. [unreadVariable]
[core/energy_methods/LoopCloseEnergy.cc:120]: (warning) Assert statement calls a function which may have desired side effects: 'is_finite'. [assertWithSideEffect]
[core/energy_methods/MHCEpitopeEnergy.cc:110]: (warning) Member variable 'MHCEpitopeEnergy::symm_' is not initialized in the constructor. [uninitMemberVar]
[core/energy_methods/MHCEpitopeEnergy.cc:121]: (performance) Variable 'setup_helpers_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/MHCEpitopeEnergy.cc:418]: (style) Parameter 'symm_multipliers' can be declared with const [constParameter]
[core/energy_methods/MPResidueLipophilicityEnergy.cc:503]: (style) Parameter 'full_atom' can be declared with const [constParameter]
[core/energy_methods/MPResidueLipophilicityEnergy.cc:524]: (style) Parameter 'full_atom' can be declared with const [constParameter]
[core/energy_methods/MPSpanAngleEnergy.cc:88]: (style) Variable 'mp_span_ins' is assigned a value that is never used. [unreadVariable]
[core/energy_methods/MPSpanInsertionEnergy.cc:238]: (style) The scope of the variable 'add_tm' can be reduced. [variableScope]
[core/energy_methods/MultipoleElecEnergy.cc:72]: (warning) Assert statement calls a function which may have desired side effects: 'data'. [assertWithSideEffect]
[core/energy_methods/NetChargeEnergy.cc:86]: (performance) Variable 'setup_helpers_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/OtherPoseEnergy.cc:73]: (style) Variable 'full_model_info' can be declared with const [constVariable]
[core/energy_methods/PointWaterEnergy.cc:222]: (style) The scope of the variable 'deriv_protein' can be reduced. [variableScope]
[core/energy_methods/PointWaterEnergy.cc:223]: (style) The scope of the variable 'deriv_water' can be reduced. [variableScope]
[core/energy_methods/PointWaterEnergy.cc:90]: (performance) Variable 'pwater_ref_wt_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/ProQ_Energy.cc:100]: (performance) Variable 'entropy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/ProQ_Energy.cc:101]: (performance) Variable 'topology_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/ProQ_Energy.cc:102]: (performance) Variable 'prob_profile_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/ProQ_Energy.cc:103]: (performance) Variable 'scaled_logodds_profile_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/ProQ_Energy.cc:104]: (performance) Variable 'ss_pred_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/ProQ_Energy.cc:105]: (performance) Variable 'ss1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/ProQ_Energy.cc:106]: (performance) Variable 'z_pred_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/ProQ_Energy.cc:107]: (performance) Variable 'rsa_pred_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/ProQ_Energy.cc:108]: (performance) Variable 'rsa_class_pred_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/ProQ_Energy.cc:1270]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/energy_methods/ProQ_Energy.cc:247]: (style) Parameter 'proq' can be declared with const [constParameter]
[core/energy_methods/ProQ_Energy.cc:248]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[core/energy_methods/ProQ_Energy.cc:571]: (style) Condition 'use_naccess' is always false [knownConditionTrueFalse]
[core/energy_methods/ProQ_Energy.cc:99]: (performance) Variable 'nres_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/RG_Energy_RNA.cc:144]: (style) Variable 'rna_scoring_info' can be declared with const [constVariable]
[core/energy_methods/RG_Energy_RNA.cc:85]: (style) Variable 'rna_scoring_info' can be declared with const [constVariable]
[core/energy_methods/RG_LocalEnergy.cc:69]: (performance) Variable 'firstRes_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/RG_LocalEnergy.cc:70]: (performance) Variable 'lastRes_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/RNA_FA_ElecEnergy.cc:311]: (style) Variable 'score' is assigned a value that is never used. [unreadVariable]
[core/energy_methods/RNA_FA_ElecEnergy.cc:534]: (warning) Assert statement calls a function which may have desired side effects: 'is_finite'. [assertWithSideEffect]
[core/energy_methods/RNA_FullAtomStackingEnergy.cc:209]: (style) Variable 'rna_scoring_info' can be declared with const [constVariable]
[core/energy_methods/RNA_FullAtomStackingEnergy.cc:225]: (style) Variable 'rna_scoring_info' can be declared with const [constVariable]
[core/energy_methods/RNA_FullAtomStackingEnergy.cc:288]: (warning) Assert statement calls a function which may have desired side effects: 'is_finite'. [assertWithSideEffect]
[core/energy_methods/RNA_FullAtomStackingEnergy.cc:667]: (style) Variable 'rna_scoring_info' can be declared with const [constVariable]
[core/energy_methods/RNA_FullAtomStackingEnergy.cc:668]: (style) Variable 'rna_centroid_info' can be declared with const [constVariable]
[core/energy_methods/RNA_JR_SuiteEnergy.cc:112]: (style) Variable 'assignment' is assigned a value that is never used. [unreadVariable]
[core/energy_methods/RNA_PairwiseLowResolutionEnergy.cc:419]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/energy_methods/RNA_PairwiseLowResolutionEnergy.cc:96]: (warning) Member variable 'RNA_PairwiseLowResolutionEnergy::might_be_designing_' is not initialized in the constructor. [uninitMemberVar]
[core/energy_methods/RNA_PairwiseLowResolutionEnergy.cc:96]: (warning) Member variable 'RNA_PairwiseLowResolutionEnergy::rna_raw_base_base_info_' is not initialized in the constructor. [uninitMemberVar]
[core/energy_methods/RNA_SugarCloseEnergy.cc:163]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/energy_methods/RNA_SuiteEnergy.cc:151]: (warning) Assert statement calls a function which may have desired side effects: 'is_finite'. [assertWithSideEffect]
[core/energy_methods/SAXSEnergy.cc:125]: (performance) Variable 'the_config_file_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/SAXSEnergy.cc:82]: (style) Parameter 'config_file' can be declared with const [constParameter]
[core/energy_methods/SAXSEnergy.hh:144]: (style) Unused private function: 'SAXSEnergy::compute_chi_with_fit' [unusedPrivateFunction]
[core/energy_methods/SAXSEnergy.hh:145]: (style) Unused private function: 'SAXSEnergy::compute_L1' [unusedPrivateFunction]
[core/energy_methods/SSElementMotifContactEnergy.cc:91]: (style) Variable 'endSS' is assigned a value that is never used. [unreadVariable]
[core/energy_methods/StackElecEnergy.cc:161]: (style) Variable 'rna_scoring_info' can be declared with const [constVariable]
[core/energy_methods/StackElecEnergy.cc:172]: (style) Variable 'rna_scoring_info' can be declared with const [constVariable]
[core/energy_methods/StackElecEnergy.cc:188]: (style) Variable 'rna_scoring_info' can be declared with const [constVariable]
[core/energy_methods/StackElecEnergy.cc:802]: (style) Variable 'rna_scoring_info' can be declared with const [constVariable]
[core/energy_methods/StackElecEnergy.cc:803]: (style) Variable 'rna_centroid_info' can be declared with const [constVariable]
[core/energy_methods/VdWTinkerEnergy.cc:71]: (warning) Assert statement calls a function which may have desired side effects: 'data'. [assertWithSideEffect]
[core/energy_methods/WaterSpecificEnergy.cc:109] -> [core/energy_methods/WaterSpecificEnergy.cc:115]: (warning) Identical condition 'rsd.name()!="TP3"', second condition is always false [identicalConditionAfterEarlyExit]
[core/energy_methods/WaterSpecificEnergy.cc:79]: (performance) Variable 'wat_desolv_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/energy_methods/XtalMLEnergy.cc:86]: (performance) Variable 'ml' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/environment/FoldTreeSketch.cc:521]: (style) Variable 'caller_op' is assigned a value that is never used. [unreadVariable]
[core/fragment/BBTorsionAndAnglesSRFD.hh:41]: (style) Parameter 'angles_in' can be declared with const [constParameter]
[core/fragment/ConstantLengthFragSet.cc:65]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[core/fragment/ConstantLengthFragSetIterator_.hh:79]: (style) Variable 'fsit' is assigned a value that is never used. [unreadVariable]
[core/fragment/FragCache.hh:235]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[core/fragment/FragCache.hh:244]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[core/fragment/FragData.cc:46]: (style) Parameter 'residue_set' can be declared with const [constParameter]
[core/fragment/FrameListIterator_.hh:58]: (style) Variable 'fsit' is assigned a value that is never used. [unreadVariable]
[core/fragment/MinimalFragSetIterator_.hh:99]: (style) Variable 'fsit' is assigned a value that is never used. [unreadVariable]
[core/fragment/OrderedFragSetIterator_.hh:96]: (style) Variable 'fsit' is assigned a value that is never used. [unreadVariable]
[core/fragment/rna/RNA_FragmentHomologyExclusion.cc:95]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/fragment/SecondaryStructure.cc:205]: (performance) Variable 'total_residue_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/fragment/util.cc:175]: (style) Parameter 'source' can be declared with const [constParameter]
[core/id/AtomID.hh:80] -> [core/id/AtomID.hh:105]: (style) Local variable 'rsd' shadows outer function [shadowFunction]
[core/id/AtomID.hh:89] -> [core/id/AtomID.hh:104]: (style) Local variable 'atomno' shadows outer function [shadowFunction]
[core/id/JumpID.hh:60]: (performance) Variable 'rsd1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/id/JumpID.hh:61]: (performance) Variable 'rsd2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/id/NamedStubID.cc:51]: (performance) Function parameter 'a3' should be passed by const reference. [passedByValue]
[core/import_pose/atom_tree_diffs/atom_tree_diff.cc:83]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[core/import_pose/import_pose.cc:2109]: (performance) Function parameter 'atomname' should be passed by const reference. [passedByValue]
[core/import_pose/import_pose.cc:2235]: (style) Variable 'rsd_set_coarse' is assigned a value that is never used. [unreadVariable]
[core/import_pose/import_pose.cc:620]: (style) Variable 'pos2' is assigned a value that is never used. [unreadVariable]
[core/import_pose/import_pose.cc:797]: (style) Parameter 'missing' can be declared with const [constParameter]
[core/import_pose/import_pose_options.cc:44]: (warning) Member variable 'ImportPoseOptions::centroid_' is not initialized in the constructor. [uninitMemberVar]
[core/import_pose/import_pose_options.cc:44]: (warning) Member variable 'ImportPoseOptions::fold_tree_io_' is not initialized in the constructor. [uninitMemberVar]
[core/import_pose/import_pose_options.cc:44]: (warning) Member variable 'ImportPoseOptions::membrane_' is not initialized in the constructor. [uninitMemberVar]
[core/import_pose/import_pose_options.cc:44]: (warning) Member variable 'ImportPoseOptions::no_optH_' is not initialized in the constructor. [uninitMemberVar]
[core/import_pose/import_pose_options.cc:44]: (warning) Member variable 'ImportPoseOptions::pack_missing_sidechains_' is not initialized in the constructor. [uninitMemberVar]
[core/import_pose/import_pose_options.cc:44]: (warning) Member variable 'ImportPoseOptions::read_fold_tree_' is not initialized in the constructor. [uninitMemberVar]
[core/import_pose/import_pose_options.cc:44]: (warning) Member variable 'ImportPoseOptions::residue_type_set_mode_' is not initialized in the constructor. [uninitMemberVar]
[core/import_pose/import_pose_options.cc:44]: (warning) Member variable 'ImportPoseOptions::set_up_metal_bonds_' is not initialized in the constructor. [uninitMemberVar]
[core/import_pose/import_pose_options.cc:44]: (warning) Member variable 'ImportPoseOptions::skip_set_reasonable_fold_tree_' is not initialized in the constructor. [uninitMemberVar]
[core/import_pose/import_pose_options.cc:46]: (warning) Member variable 'ImportPoseOptions::fold_tree_io_' is not initialized in the constructor. [uninitMemberVar]
[core/import_pose/libraries/BasePairStepLibrary.cc:65]: (performance) Variable 'base_pair_step_sequence_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/import_pose/libraries/RNA_ChunkLibrary.cc:137]: (style) Variable 'non_standard_residue_map' is assigned a value that is never used. [unreadVariable]
[core/import_pose/libraries/RNA_ChunkLibrary.cc:69]: (warning) Member variable 'RNA_ChunkLibrary::coarse_rna_' is not initialized in the constructor. [uninitMemberVar]
[core/import_pose/libraries/RNA_ChunkLibrary.cc:69]: (warning) Member variable 'RNA_ChunkLibrary::do_rosetta_library_domain_check_' is not initialized in the constructor. [uninitMemberVar]
[core/import_pose/libraries/RNA_ChunkLibrary.cc:71]: (performance) Variable 'chunk_coverage_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/import_pose/libraries/RNA_LibraryManager.cc:37]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[core/import_pose/libraries/RNA_LibraryManager.cc:50]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[core/import_pose/options/RNA_BasicOptions.cc:69]: (style) Parameter 'opts' can be declared with const [constParameter]
[core/import_pose/PDBSilentStruct.cc:211]: (style) Variable 'sfr_op' is assigned a value that is never used. [unreadVariable]
[core/import_pose/PDBSilentStruct.cc:227]: (style) 'operator=' should either return reference to 'this' instance or be declared private and left unimplemented. [operatorEqShouldBeLeftUnimplemented]
[core/import_pose/PDBSilentStruct.cc:93]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[core/import_pose/PDBSilentStruct.hh:109]: (performance) Function parameter 'new_sfr' should be passed by const reference. [passedByValue]
[core/import_pose/pose_stream/ExtendedPoseInputStream.hh:35]: (performance) Function parameter 'sequence' should be passed by const reference. [passedByValue]
[core/import_pose/pose_stream/SilentFilePoseInputStream.cc:106]: (performance) Variable 'sfd_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/import_pose/pose_stream/SilentFilePoseInputStream.cc:118]: (performance) Variable 'sfd_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/import_pose/pose_stream/SilentFilePoseInputStream.cc:144]: (style) Parameter 'sfd' can be declared with const [constParameter]
[core/import_pose/pose_stream/SilentFilePoseInputStream.cc:61]: (performance) Variable 'sfd_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/import_pose/pose_stream/SilentFilePoseInputStream.cc:67]: (performance) Variable 'sfd_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/import_pose/pose_stream/SilentFilePoseInputStream.cc:74]: (performance) Variable 'sfd_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/import_pose/pose_stream/SilentFilePoseInputStream.cc:86]: (performance) Variable 'sfd_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/import_pose/pose_stream/SilentFilePoseInputStream.cc:96]: (performance) Variable 'sfd_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/import_pose/RNA_DeNovoParameters.cc:207]: (style) Variable 'e1' is assigned a value that is never used. [unreadVariable]
[core/import_pose/RNA_DeNovoParameters.cc:207]: (style) Variable 'e2' is assigned a value that is never used. [unreadVariable]
[core/import_pose/RNA_DeNovoParameters.cc:208]: (style) Variable 'o' is assigned a value that is never used. [unreadVariable]
[core/import_pose/RNA_DeNovoSetup.cc:141]: (warning) Member variable 'RNA_DeNovoSetup::minimize_rna_' is not initialized in the constructor. [uninitMemberVar]
[core/import_pose/RNA_DeNovoSetup.cc:268]: (style) Parameter 'opts' can be declared with const [constParameter]
[core/import_pose/RNA_DeNovoSetup.cc:745]: (style) The scope of the variable 'c' can be reduced. [variableScope]
[core/import_pose/RNA_HelixAssembler.cc:294]: (error) Out of bounds access of pose_seq, index 'pose_seq.size()' is out of bounds. [containerOutOfBoundsIndexExpression]
[core/init/init.cc:1077]: (style) Variable 'path_size' is assigned a value that is never used. [unreadVariable]
[core/init/init.cc:1113]: (style) Condition 'path_string.length()>0' is always false [knownConditionTrueFalse]
[core/init/init.cc:1114] -> [core/init/init.cc:1116]: (style) Redundant initialization for 'found'. The initialized value is overwritten before it is read. [redundantInitialization]
[core/init/init.cc:1116]: (performance) Inefficient usage of string::find() in condition; string::starts_with() could be faster. [stlIfStrFind]
[core/io/CrystInfo.hh:62]: (performance) Function parameter 'spacegroupin' should be passed by const reference. [passedByValue]
[core/io/HeaderInformation.cc:760]: (style) Variable 'l_end' is assigned a value that is never used. [unreadVariable]
[core/io/HeaderInformation.cc:760]: (style) Variable 'l_len' is assigned a value that is never used. [unreadVariable]
[core/io/mmcif/cif_reader.cc:106]: (style) The scope of the variable 'modeltags_present' can be reduced. [variableScope]
[core/io/mmcif/cif_reader.cc:430]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[core/io/mmtf/mmtf_reader.cc:539]: (performance) Function parameter 'atom_idx_chains' should be passed by const reference. [passedByValue]
[core/io/mmtf/mmtf_writer.cc:279]: (style) Unused variable: type_check [unusedVariable]
[core/io/mmtf/mmtf_writer.cc:383]: (style) Unused variable: model_heterogen_names [unusedVariable]
[core/io/mmtf/mmtf_writer.cc:384]: (style) Unused variable: model_residue_type_base_names [unusedVariable]
[core/io/mmtf/mmtf_writer.cc:549]: (style) The scope of the variable 'ai' can be reduced. [variableScope]
[core/io/pdb/pdb_reader.cc:267]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[core/io/pose_to_sfr/PoseToStructFileRepConverter.cc:710]: (error) Uninitialized struct member: link.resSeq1 [uninitStructMember]
[core/io/pose_to_sfr/PoseToStructFileRepConverter.cc:711]: (error) Uninitialized struct member: link.chainID1 [uninitStructMember]
[core/io/pose_to_sfr/PoseToStructFileRepConverter.cc:711]: (error) Uninitialized struct member: link.iCode1 [uninitStructMember]
[core/io/pose_to_sfr/PoseToStructFileRepConverter.cc:733]: (error) Uninitialized struct member: link.resSeq2 [uninitStructMember]
[core/io/pose_to_sfr/PoseToStructFileRepConverter.cc:734]: (error) Uninitialized struct member: link.chainID2 [uninitStructMember]
[core/io/pose_to_sfr/PoseToStructFileRepConverter.cc:734]: (error) Uninitialized struct member: link.iCode2 [uninitStructMember]
[core/io/pose_to_sfr/PoseToStructFileRepConverter.cc:769]: (error) Uninitialized struct member: ssbond.resSeq1 [uninitStructMember]
[core/io/pose_to_sfr/PoseToStructFileRepConverter.cc:770]: (error) Uninitialized struct member: ssbond.chainID1 [uninitStructMember]
[core/io/pose_to_sfr/PoseToStructFileRepConverter.cc:770]: (error) Uninitialized struct member: ssbond.iCode1 [uninitStructMember]
[core/io/pose_to_sfr/PoseToStructFileRepConverter.cc:785]: (error) Uninitialized struct member: ssbond.resSeq2 [uninitStructMember]
[core/io/pose_to_sfr/PoseToStructFileRepConverter.cc:786]: (error) Uninitialized struct member: ssbond.chainID2 [uninitStructMember]
[core/io/pose_to_sfr/PoseToStructFileRepConverter.cc:786]: (error) Uninitialized struct member: ssbond.iCode2 [uninitStructMember]
[core/io/raw_data/DecoyFileData.hh:37]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[core/io/raw_data/DecoyStruct.cc:45]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[core/io/raw_data/DisulfideFile.hh:78]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[core/io/raw_data/RawStruct.hh:101]: (performance) Function parameter 'sequence' should be passed by const reference. [passedByValue]
[core/io/raw_data/RawStruct.hh:96]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[core/io/raw_data/ScoreFileData.hh:38]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[core/io/raw_data/ScoreStructJSON.cc:28]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[core/io/raw_data/ScoreStructText.cc:35]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[core/io/rna/RNA_DataReader.cc:321]: (style) Variable 'rna_data_info' can be declared with const [constVariable]
[core/io/sequence_comparation/DesignContrast.cc:80]: (performance) Variable 'list_file_names_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/io/serialization/serialize_pose.hh:34]: (warning) Struct 'BUFFER' does not have a copy constructor which is recommended since it has dynamic memory/resource allocation(s). [noCopyConstructor]
[core/io/serialization/serialize_pose.hh:34]: (warning) Struct 'BUFFER' does not have a operator= which is recommended since it has dynamic memory/resource allocation(s). [noOperatorEq]
[core/io/silent/BinarySilentStruct.cc:118]: (performance) Variable 'symminfo_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/io/silent/BinarySilentStruct.cc:277]: (style) Parameter 'container' can be declared with const [constParameter]
[core/io/silent/BinarySilentStruct.hh:152]: (performance) Function parameter 'f' should be passed by const reference. [passedByValue]
[core/io/silent/ProteinSilentStruct.hh:50]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[core/io/silent/ProteinSilentStruct.hh:57]: (performance) Variable 'symminfo_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/io/silent/ProteinSilentStruct.hh:59] -> [core/io/silent/ProteinSilentStruct.hh:140]: (warning) Virtual function 'fill_struct' is called from constructor 'ProteinSilentStruct_Template < core :: Real >(const SilentFileOptions&opts,const core::pose::Pose&pose,std::string tag="empty_tag",bool fa=false)' at line 59. Dynamic binding is not used. [virtualCallInConstructor]
[core/io/silent/ProteinSilentStruct.hh:59] -> [core/io/silent/ProteinSilentStruct.hh:140]: (warning) Virtual function 'fill_struct' is called from constructor 'ProteinSilentStruct_Template < float >(const SilentFileOptions&opts,const core::pose::Pose&pose,std::string tag="empty_tag",bool fa=false)' at line 59. Dynamic binding is not used. [virtualCallInConstructor]
[core/io/silent/RigidBodySilentStruct.cc:48]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[core/io/silent/RigidBodySilentStruct.hh:47]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[core/io/silent/RigidBodySilentStruct.hh:51]: (performance) Variable 'symminfo_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/io/silent/RigidBodySilentStruct.hh:53] -> [core/io/silent/RigidBodySilentStruct.hh:107]: (warning) Virtual function 'fill_struct' is called from constructor 'RigidBodySilentStruct(const SilentFileOptions&opts,const core::pose::Pose&pose,std::string tag="empty_tag")' at line 53. Dynamic binding is not used. [virtualCallInConstructor]
[core/io/silent/RNA_SilentStruct.cc:100]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[core/io/silent/RNA_SilentStruct.cc:551]: (style) 'operator=' should either return reference to 'this' instance or be declared private and left unimplemented. [operatorEqShouldBeLeftUnimplemented]
[core/io/silent/RNA_SilentStruct.hh:187]: (style) Parameter 'torsions' can be declared with const [constParameter]
[core/io/silent/RNA_SilentStruct.hh:191]: (style) Parameter 'torsions' can be declared with const [constParameter]
[core/io/silent/ScoreFileSilentStruct.cc:104]: (style) Variable 'energy_names_' is assigned a value that is never used. [unreadVariable]
[core/io/silent/ScoreFileSilentStruct.cc:111]: (style) Variable 'energy_names_' is assigned a value that is never used. [unreadVariable]
[core/io/silent/ScoreFileSilentStruct.cc:140]: (style) 'operator=' should either return reference to 'this' instance or be declared private and left unimplemented. [operatorEqShouldBeLeftUnimplemented]
[core/io/silent/ScoreFileSilentStruct.cc:68]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[core/io/silent/ScoreJumpFileSilentStruct.cc:210]: (style) 'operator=' should either return reference to 'this' instance or be declared private and left unimplemented. [operatorEqShouldBeLeftUnimplemented]
[core/io/silent/ScoreJumpFileSilentStruct.cc:69]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[core/io/silent/ScoreJumpFileSilentStruct.hh:121]: (performance) Function parameter 'f' should be passed by const reference. [passedByValue]
[core/io/silent/SharedSilentData.hh:58]: (performance) Function parameter 'sequence' should be passed by const reference. [passedByValue]
[core/io/silent/SilentEnergy.hh:37]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[core/io/silent/SilentEnergy.hh:50]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[core/io/silent/SilentEnergy.hh:51]: (performance) Function parameter 'value' should be passed by const reference. [passedByValue]
[core/io/silent/SilentFileData.cc:516] -> [core/io/silent/SilentFileData.cc:523]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[core/io/silent/SilentFileData.hh:192]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[core/io/silent/SilentFileOptions.cc:136]: (style) Parameter 'read_options' can be declared with const [constParameter]
[core/io/silent/SilentFileOptions.cc:165]: (style) Parameter 'attributes' can be declared with const [constParameter]
[core/io/silent/SilentFileOptions.cc:357]: (performance) Function parameter 'setting' should be passed by const reference. [passedByValue]
[core/io/silent/SilentFileOptions.cc:370]: (performance) Function parameter 'setting' should be passed by const reference. [passedByValue]
[core/io/silent/SilentFileOptions.cc:396]: (performance) Function parameter 'setting' should be passed by const reference. [passedByValue]
[core/io/silent/SilentFileOptions.cc:402]: (performance) Function parameter 'setting' should be passed by const reference. [passedByValue]
[core/io/silent/SilentStruct.cc:1093]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/io/silent/SilentStruct.cc:248]: (style) Parameter 'container' can be declared with const [constParameter]
[core/io/StructFileReaderOptions.cc:41]: (warning) Member variable 'StructFileReaderOptions::glycam_pdb_format_' is not initialized in the constructor. [uninitMemberVar]
[core/io/StructFileReaderOptions.cc:41]: (warning) Member variable 'StructFileReaderOptions::mmtf_extra_data_io_' is not initialized in the constructor. [uninitMemberVar]
[core/io/StructFileReaderOptions.cc:41]: (warning) Member variable 'StructFileReaderOptions::new_chain_order_' is not initialized in the constructor. [uninitMemberVar]
[core/io/StructFileReaderOptions.cc:41]: (warning) Member variable 'StructFileReaderOptions::obey_ENDMDL_' is not initialized in the constructor. [uninitMemberVar]
[core/io/StructFileReaderOptions.cc:41]: (warning) Member variable 'StructFileReaderOptions::read_pdb_header_' is not initialized in the constructor. [uninitMemberVar]
[core/io/StructFileRepOptions.cc:362]: (style) Parameter 'read_options' can be declared with const [constParameter]
[core/io/StructFileRepOptions.cc:433]: (style) Parameter 'attributes' can be declared with const [constParameter]
[core/io/util.cc:491]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[core/io/util.cc:494]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[core/kinematics/AtomTree.cc:988]: (style) Variable 'atom1' is assigned a value that is never used. [unreadVariable]
[core/kinematics/AtomTree.cc:989]: (style) Variable 'atom2' is assigned a value that is never used. [unreadVariable]
[core/kinematics/Exceptions.hh:40]: (performance) Function parameter 'f' should be passed by const reference. [passedByValue]
[core/kinematics/FoldTree.cc:1911]: (warning) Assert statement calls a function which may have desired side effects: 'stop'. [assertWithSideEffect]
[core/kinematics/FoldTree.cc:1915]: (warning) Assert statement calls a function which may have desired side effects: 'start'. [assertWithSideEffect]
[core/kinematics/FoldTree.cc:1915]: (warning) Assert statement calls a function which may have desired side effects: 'stop'. [assertWithSideEffect]
[core/kinematics/FoldTree.cc:1923]: (warning) Assert statement calls a function which may have desired side effects: 'stop'. [assertWithSideEffect]
[core/kinematics/FoldTree.cc:1927]: (warning) Assert statement calls a function which may have desired side effects: 'start'. [assertWithSideEffect]
[core/kinematics/FoldTree.cc:1927]: (warning) Assert statement calls a function which may have desired side effects: 'stop'. [assertWithSideEffect]
[core/kinematics/FoldTree.cc:2625]: (style) Checking if unsigned expression 'edge_list_.size()' is less than zero. [unsignedLessThanZero]
[core/kinematics/FoldTree.cc:370]: (warning) Assert statement calls a function which may have desired side effects: 'stop'. [assertWithSideEffect]
[core/kinematics/tree/Atom_.hh:93]: (warning) Member variable 'Atom_::raw_parent_' is not assigned a value in 'Atom_::operator='. [operatorEqVarError]
[core/kinematics/tree/BondedAtom.cc:432]: (style) Variable 'my_stub' is assigned a value that is never used. [unreadVariable]
[core/kinematics/tree/BondedAtom.cc:433]: (style) Variable 'input_stub' is assigned a value that is never used. [unreadVariable]
[core/kinematics/tree/JumpAtom.cc:326]: (warning) Assert statement calls a function which may have desired side effects: 'parent'. [assertWithSideEffect]
[core/kinematics/tree/JumpAtom.cc:381]: (style) Variable 'input_stub' is assigned a value that is never used. [unreadVariable]
[core/kinematics/tree/JumpAtom.cc:393]: (style) Variable 'my_stub' is assigned a value that is never used. [unreadVariable]
[core/kinematics/tree/JumpAtom.cc:98]: (warning) Assert statement calls a function which may have desired side effects: 'parent'. [assertWithSideEffect]
[core/membrane/hull.cc:282]: (error) When i==coords.size(), coords.at(i) is out of bounds. [stlOutOfBounds]
[core/optimization/atom_tree_minimize.cc:242]: (warning) Assert statement calls a function which may have desired side effects: 'energies'. [assertWithSideEffect]
[core/optimization/AtomTreeMultifunc.cc:116]: (style) Condition 'dump_silent' is always true [knownConditionTrueFalse]
[core/optimization/AtomTreeMultifunc.cc:146]: (style) Condition 'check_score_components' is always true [knownConditionTrueFalse]
[core/optimization/AtomTreeMultifunc.cc:149]: (style) Condition 'check_score_components_verbose' is always false [knownConditionTrueFalse]
[core/optimization/AtomTreeMultifunc.cc:178]: (style) Condition 'check_rama' is always false [knownConditionTrueFalse]
[core/optimization/AtomTreeMultifunc.cc:185]: (style) Condition 'check_hbonds' is always true [knownConditionTrueFalse]
[core/optimization/AtomTreeMultifunc.cc:90]: (style) The scope of the variable 'check_score_components_verbose' can be reduced. [variableScope]
[core/optimization/cartesian_minimize.cc:119]: (warning) Assert statement calls a function which may have desired side effects: 'energies'. [assertWithSideEffect]
[core/optimization/cartesian_minimize.cc:184]: (style) Parameter 'min_map' can be declared with const [constParameter]
[core/optimization/CartesianMultifunc.cc:116]: (style) Condition 'dump_silent' is always true [knownConditionTrueFalse]
[core/optimization/CartesianMultifunc.cc:146]: (style) Condition 'check_score_components' is always true [knownConditionTrueFalse]
[core/optimization/CartesianMultifunc.cc:149]: (style) Condition 'check_score_components_verbose' is always false [knownConditionTrueFalse]
[core/optimization/CartesianMultifunc.cc:178]: (style) Condition 'check_rama' is always false [knownConditionTrueFalse]
[core/optimization/CartesianMultifunc.cc:185]: (style) Condition 'check_hbonds' is always true [knownConditionTrueFalse]
[core/optimization/CartesianMultifunc.cc:90]: (style) The scope of the variable 'check_score_components_verbose' can be reduced. [variableScope]
[core/optimization/GA_Minimizer.cc:209]: (style) Parameter 'A' can be declared with const [constParameter]
[core/optimization/GA_Minimizer.cc:209]: (style) Parameter 'B' can be declared with const [constParameter]
[core/optimization/LineMinimizer.cc:118]: (style) Parameter 'func_eval' can be declared with const [constParameter]
[core/optimization/LineMinimizer.cc:197]: (style) Parameter 'func_eval' can be declared with const [constParameter]
[core/optimization/LineMinimizer.hh:134] -> [core/optimization/LineMinimizer.hh:199]: (warning) The class 'StrongWolfeLineMinimization' defines member variable with name '_nonmonotone' also defined in its parent class 'LineMinimizationAlgorithm'. [duplInheritedMember]
[core/optimization/Minimizer.cc:659]: (style) Variable 'invdnorm' is assigned a value that is never used. [unreadVariable]
[core/optimization/MinimizerOptions.cc:96]: (performance) Function parameter 'min_type_in' should be passed by const reference. [passedByValue]
[core/optimization/ParticleSwarmMinimizer.cc:240]: (performance) Function parameter 'header' should be passed by const reference. [passedByValue]
[core/optimization/ParticleSwarmMinimizer.hh:57]: (style) Parameter 'f' can be declared with const [constParameter]
[core/optimization/ParticleSwarmMinimizer.hh:70]: (style) Parameter 'new_score' can be declared with const [constParameter]
[core/optimization/symmetry/sym_atom_tree_minimize.cc:541]: (style) Variable 'min_debug.best_norm_analytic' is assigned a value that is never used. [unreadVariable]
[core/optimization/symmetry/sym_atom_tree_minimize.cc:542]: (style) Variable 'min_debug.best_norm_numeric' is assigned a value that is never used. [unreadVariable]
[core/optimization/symmetry/sym_atom_tree_minimize.cc:571]: (style) Variable 'min_debug.best_norm_analytic' is assigned a value that is never used. [unreadVariable]
[core/optimization/symmetry/sym_atom_tree_minimize.cc:572]: (style) Variable 'min_debug.best_norm_numeric' is assigned a value that is never used. [unreadVariable]
[core/pack/annealer/MultiCoolAnnealer.cc:363]: (style) Parameter 'state_on_node' can be declared with const [constParameter]
[core/pack/annealer/MultiCoolAnnealer.cc:457]: (style) Variable 'netstate_to_replace' is assigned a value that is never used. [unreadVariable]
[core/pack/dunbrack/cenrot/SingleResidueCenrotLibrary.cc:208]: (style) Parameter 'scratch' can be declared with const [constParameter]
[core/pack/dunbrack/cenrot/SingleResidueCenrotLibrary.cc:323]: (style) Parameter 'scratch' can be declared with const [constParameter]
[core/pack/dunbrack/cenrot/SingleResidueCenrotLibrary.hh:80]: (performance) Variable 'energy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/pack/dunbrack/cenrot/SingleResidueCenrotLibrary.hh:82]: (warning) Class 'CentroidRotamerSampleData' does not have a operator= which is recommended since it has dynamic memory/resource allocation(s). [noOperatorEq]
[core/pack/dunbrack/cenrot/SingleResidueCenrotLibrary.hh:89]: (performance) Variable 'prob_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/pack/dunbrack/RotamericSingleResidueDunbrackLibraryParser.hh:158]: (style) Unused private function: 'RotamericSingleResidueDunbrackLibraryParser::hacky_parser_init_workaround' [unusedPrivateFunction]
[core/pack/dunbrack/RotamerLibrary.cc:1063]: (style) Variable 'dps' is assigned a value that is never used. [unreadVariable]
[core/pack/dunbrack/RotamerLibrary.cc:1306]: (style) Variable 'dps' is assigned a value that is never used. [unreadVariable]
[core/pack/dunbrack/RotamerLibrary.cc:582]: (style) Condition '!decide_read_from_binary_10()' is always false [knownConditionTrueFalse]
[core/pack/dunbrack/RotamerLibrary.cc:586]: (style) Condition '!decide_read_from_binary_02()' is always false [knownConditionTrueFalse]
[core/pack/dunbrack/RotamerLibrary.cc:658]: (style) Variable 'dps' is assigned a value that is never used. [unreadVariable]
[core/pack/dunbrack/RotamerLibrary.cc:764]: (style) Condition '!decide_write_binary_10()' is always false [knownConditionTrueFalse]
[core/pack/dunbrack/RotamerLibrary.cc:768]: (style) Condition '!decide_write_binary_02()' is always false [knownConditionTrueFalse]
[core/pack/dunbrack/RotamerLibrary.cc:91] -> [core/pack/dunbrack/SemiRotamericSingleResidueDunbrackLibrary.tmpl.hh:128]: (style) Local variable 'TR' shadows outer variable [shadowVariable]
[core/pack/dunbrack/RotamerLibrary.cc:91] -> [core/pack/dunbrack/SemiRotamericSingleResidueDunbrackLibrary.tmpl.hh:159]: (style) Local variable 'TR' shadows outer variable [shadowVariable]
[core/pack/dunbrack/RotamerLibrary.cc:91] -> [core/pack/dunbrack/SemiRotamericSingleResidueDunbrackLibrary.tmpl.hh:94]: (style) Local variable 'TR' shadows outer variable [shadowVariable]
[core/pack/dunbrack/SingleResidueDunbrackLibrary.cc:59] -> [core/pack/dunbrack/SemiRotamericSingleResidueDunbrackLibrary.tmpl.hh:128]: (style) Local variable 'TR' shadows outer variable [shadowVariable]
[core/pack/dunbrack/SingleResidueDunbrackLibrary.cc:59] -> [core/pack/dunbrack/SemiRotamericSingleResidueDunbrackLibrary.tmpl.hh:159]: (style) Local variable 'TR' shadows outer variable [shadowVariable]
[core/pack/dunbrack/SingleResidueDunbrackLibrary.cc:59] -> [core/pack/dunbrack/SemiRotamericSingleResidueDunbrackLibrary.tmpl.hh:94]: (style) Local variable 'TR' shadows outer variable [shadowVariable]
[core/pack/dunbrack/SingleResidueDunbrackLibrary.cc:68] -> [core/pack/dunbrack/SemiRotamericSingleResidueDunbrackLibrary.tmpl.hh:130]: (style) Local variable 'ANGLE_DELTA' shadows outer function [shadowFunction]
[core/pack/dunbrack/SingleResidueDunbrackLibrary.cc:68] -> [core/pack/dunbrack/SemiRotamericSingleResidueDunbrackLibrary.tmpl.hh:96]: (style) Local variable 'ANGLE_DELTA' shadows outer function [shadowFunction]
[core/pack/dunbrack/SingleResidueDunbrackLibrary.cc:69] -> [core/pack/dunbrack/SemiRotamericSingleResidueDunbrackLibrary.tmpl.hh:131]: (style) Local variable 'PROB_DELTA' shadows outer function [shadowFunction]
[core/pack/dunbrack/SingleResidueDunbrackLibrary.cc:69] -> [core/pack/dunbrack/SemiRotamericSingleResidueDunbrackLibrary.tmpl.hh:97]: (style) Local variable 'PROB_DELTA' shadows outer function [shadowFunction]
[core/pack/dunbrack/SingleResidueDunbrackLibrary.cc:71] -> [core/pack/dunbrack/SemiRotamericSingleResidueDunbrackLibrary.tmpl.hh:161]: (style) Local variable 'COEF_DELTA' shadows outer function [shadowFunction]
[core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/ApproximateBuriedUnsatPenalty.cc:89]: (performance) Variable 'scorefxn_sc_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/util.cc:206]: (warning) Assert statement calls a function which may have desired side effects: 'iter'. [assertWithSideEffect]
[core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/util.cc:616]: (style) Condition 'do_store' is always true [knownConditionTrueFalse]
[core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/util.cc:986]: (warning) Assert statement calls a function which may have desired side effects: 'is_data_default'. [assertWithSideEffect]
[core/pack/guidance_scoreterms/buried_unsat_penalty/graph/BuriedUnsatPenaltyGraph.cc:1174]: (warning) Assert statement calls a function which may have desired side effects: 'get_node'. [assertWithSideEffect]
[core/pack/guidance_scoreterms/buried_unsat_penalty/graph/BuriedUnsatPenaltyGraph.cc:1277]: (warning) Assert statement calls a function which may have desired side effects: 'find_edge'. [assertWithSideEffect]
[core/pack/guidance_scoreterms/voids_penalty_energy/VoidsPenaltyVoxelGrid.cc:186]: (style) Variable 'mirrorsymmconf' is assigned a value that is never used. [unreadVariable]
[core/pack/hbonds/HBondGraphInitializerIG.cc:123]: (style) Parameter 'chain_bounds' can be declared with const [constParameter]
[core/pack/interaction_graph/DoubleDensePDInteractionGraph.cc:51]: (warning) Member variable 'DoubleDensePDNode::alternate_state_' is not initialized in the constructor. [uninitMemberVar]
[core/pack/interaction_graph/DoubleDensePDInteractionGraph.cc:51]: (warning) Member variable 'DoubleDensePDNode::current_state_' is not initialized in the constructor. [uninitMemberVar]
[core/pack/interaction_graph/DoubleDensePDInteractionGraph.hh:101]: (style) C-style pointer casting [cstyleCast]
[core/pack/interaction_graph/DoubleDensePDInteractionGraph.hh:107]: (style) C-style pointer casting [cstyleCast]
[core/pack/interaction_graph/DoubleDensePDInteractionGraph.hh:192]: (style) C-style pointer casting [cstyleCast]
[core/pack/interaction_graph/DoubleDensePDInteractionGraph.hh:198]: (style) C-style pointer casting [cstyleCast]
[core/pack/interaction_graph/DoubleDensePDInteractionGraph.hh:267]: (style) C-style pointer casting [cstyleCast]
[core/pack/interaction_graph/DoubleDensePDInteractionGraph.hh:95]: (style) C-style pointer casting [cstyleCast]
[core/pack/interaction_graph/DoubleLazyInteractionGraph.cc:1236]: (warning) Member variable 'DoubleLazyInteractionGraph::node_considering_alt_state_' is not initialized in the constructor. [uninitMemberVar]
[core/pack/interaction_graph/DoubleLazyInteractionGraph.cc:1236]: (warning) Member variable 'DoubleLazyInteractionGraph::num_commits_since_last_update_' is not initialized in the constructor. [uninitMemberVar]
[core/pack/interaction_graph/DoubleLazyInteractionGraph.cc:1236]: (warning) Member variable 'DoubleLazyInteractionGraph::sqr_num_aa_types_' is not initialized in the constructor. [uninitMemberVar]
[core/pack/interaction_graph/FASTERInteractionGraph.cc:1404]: (style) Parameter 'netstate' can be declared with const [constParameter]
[core/pack/interaction_graph/FASTERInteractionGraph.cc:53]: (warning) Member variable 'FASTERNode::alternate_state_' is not initialized in the constructor. [uninitMemberVar]
[core/pack/interaction_graph/FASTERInteractionGraph.cc:53]: (warning) Member variable 'FASTERNode::current_state_' is not initialized in the constructor. [uninitMemberVar]
[core/pack/interaction_graph/FASTERInteractionGraph.hh:296]: (style) C-style pointer casting [cstyleCast]
[core/pack/interaction_graph/FASTERInteractionGraph.hh:302]: (style) C-style pointer casting [cstyleCast]
[core/pack/interaction_graph/FixedBBInteractionGraph.cc:107]: (style) C-style pointer casting [cstyleCast]
[core/pack/interaction_graph/LazyInteractionGraph.cc:1344]: (warning) Member variable 'LazyInteractionGraph::node_considering_alt_state_' is not initialized in the constructor. [uninitMemberVar]
[core/pack/interaction_graph/LazyInteractionGraph.cc:1344]: (warning) Member variable 'LazyInteractionGraph::num_aa_types_' is not initialized in the constructor. [uninitMemberVar]
[core/pack/interaction_graph/LazyInteractionGraph.cc:1344]: (warning) Member variable 'LazyInteractionGraph::num_commits_since_last_update_' is not initialized in the constructor. [uninitMemberVar]
[core/pack/interaction_graph/LinearMemoryInteractionGraph.cc:1043]: (style) Variable 'row_to_wipe' is assigned a value that is never used. [unreadVariable]
[core/pack/interaction_graph/LinearMemoryInteractionGraph.cc:1177]: (style) Variable 'row_to_reset' is assigned a value that is never used. [unreadVariable]
[core/pack/interaction_graph/LinearMemoryInteractionGraph.cc:445]: (style) Condition '!corresponding_edge_found_in_ig' is always false [knownConditionTrueFalse]
[core/pack/interaction_graph/LinearMemoryInteractionGraph.cc:519]: (style) Condition '!corresponding_edge_found_in_ig' is always false [knownConditionTrueFalse]
[core/pack/interaction_graph/NPDHBondInteractionGraph.hh:2241]: (style) Variable 'npd_hbond_deltaE' is assigned a value that is never used. [unreadVariable]
[core/pack/interaction_graph/NPDHBSimpleInteractionGraph.cc:307]: (style) Variable 'hbonding_to_res' can be declared with const [constVariable]
[core/pack/interaction_graph/OnTheFlyInteractionGraph.cc:551]: (style) C-style pointer casting [cstyleCast]
[core/pack/interaction_graph/OnTheFlyInteractionGraph.cc:569]: (style) C-style pointer casting [cstyleCast]
[core/pack/interaction_graph/OnTheFlyInteractionGraph.cc:589]: (style) C-style pointer casting [cstyleCast]
[core/pack/interaction_graph/OnTheFlyInteractionGraph.cc:603]: (style) C-style pointer casting [cstyleCast]
[core/pack/interaction_graph/OnTheFlyInteractionGraph.cc:615]: (style) C-style pointer casting [cstyleCast]
[core/pack/interaction_graph/OnTheFlyInteractionGraph.hh:482]: (warning) Assert statement calls a function which may have desired side effects: 'get_incident_edge'. [assertWithSideEffect]
[core/pack/interaction_graph/OnTheFlyInteractionGraph.hh:498]: (warning) Assert statement calls a function which may have desired side effects: 'get_adjacent_node'. [assertWithSideEffect]
[core/pack/interaction_graph/OnTheFlyInteractionGraph.hh:515]: (warning) Assert statement calls a function which may have desired side effects: 'get_owner'. [assertWithSideEffect]
[core/pack/interaction_graph/PDInteractionGraph.cc:1436]: (warning) Member variable 'PDInteractionGraph::num_file_aa_types_' is not initialized in the constructor. [uninitMemberVar]
[core/pack/interaction_graph/PDInteractionGraph.cc:1436]: (warning) Member variable 'PDInteractionGraph::num_nodes_in_file_' is not initialized in the constructor. [uninitMemberVar]
[core/pack/interaction_graph/PDInteractionGraph.cc:55]: (warning) Member variable 'PDNode::alternate_state_' is not initialized in the constructor. [uninitMemberVar]
[core/pack/interaction_graph/PDInteractionGraph.hh:469]: (style) C-style pointer casting [cstyleCast]
[core/pack/interaction_graph/PDInteractionGraph.hh:474]: (style) C-style pointer casting [cstyleCast]
[core/pack/interaction_graph/PDInteractionGraph.hh:480]: (style) C-style pointer casting [cstyleCast]
[core/pack/interaction_graph/PrecomputedPairEnergiesInteractionGraph.cc:108]: (style) C-style pointer casting [cstyleCast]
[core/pack/interaction_graph/PrecomputedPairEnergiesInteractionGraph.cc:131]: (style) C-style pointer casting [cstyleCast]
[core/pack/interaction_graph/PrecomputedPairEnergiesInteractionGraph.cc:60]: (style) C-style pointer casting [cstyleCast]
[core/pack/interaction_graph/PrecomputedPairEnergiesInteractionGraph.cc:85]: (style) C-style pointer casting [cstyleCast]
[core/pack/interaction_graph/ResidueArrayAnnealingEvaluator.cc:103]: (performance) Variable 'current_energy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/pack/interaction_graph/ResidueArrayAnnealingEvaluator.cc:104]: (performance) Variable 'considered_energy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/pack/interaction_graph/ResidueArrayAnnealingEvaluator.cc:76]: (performance) Variable 'current_energy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/pack/interaction_graph/ResidueArrayAnnealingEvaluator.cc:77]: (performance) Variable 'considered_energy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/pack/interaction_graph/RotamerDots.cc:1130]: (style) Variable 'fraction_uncovered' is assigned a value that is never used. [unreadVariable]
[core/pack/interaction_graph/RotamerDots.cc:1131]: (style) Variable 'atom_radius' is assigned a value that is never used. [unreadVariable]
[core/pack/interaction_graph/RotamerDots.cc:1133]: (style) Variable 'atom_area_exposed' is assigned a value that is never used. [unreadVariable]
[core/pack/interaction_graph/RotamerDots.cc:1488]: (performance) Variable 'polar_expansion_radius_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/pack/interaction_graph/RotamerDots.cc:1678]: (warning) Member variable 'InvRotamerDots::radii_' is not initialized in the constructor. [uninitMemberVar]
[core/pack/interaction_graph/RotamerDots.cc:1981]: (style) Parameter 'values' can be declared with const [constParameter]
[core/pack/interaction_graph/RotamerDots.cc:201]: (performance) Variable 'num_covered_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/pack/interaction_graph/RotamerDots.cc:480]: (warning) Member variable 'RotamerDots::radii_' is not initialized in the constructor. [uninitMemberVar]
[core/pack/interaction_graph/SimpleInteractionGraph.cc:475]: (warning) Assert statement calls a function which may have desired side effects: 'get_owner'. [assertWithSideEffect]
[core/pack/interaction_graph/SurfaceInteractionGraph.hh:1807] -> [core/pack/interaction_graph/SurfaceInteractionGraph.hh:1806]: (style) The statement 'if (alt_state_total_hASA_!=curr_state_total_hASA_) alt_state_total_hASA_=curr_state_total_hASA_' is logically equivalent to 'alt_state_total_hASA_=curr_state_total_hASA_'. [duplicateConditionalAssign]
[core/pack/interaction_graph/SurfaceInteractionGraph.hh:2353] -> [core/pack/interaction_graph/SurfaceInteractionGraph.hh:2352]: (style) The statement 'if (alt_state_total_hASA_!=curr_state_total_hASA_) alt_state_total_hASA_=curr_state_total_hASA_' is logically equivalent to 'alt_state_total_hASA_=curr_state_total_hASA_'. [duplicateConditionalAssign]
[core/pack/interaction_graph/SurfaceInteractionGraph.hh:3071]: (style) Variable 'node_num_nbs' is assigned a value that is never used. [unreadVariable]
[core/pack/interaction_graph/SymmLinMemInteractionGraph.cc:1030]: (style) Variable 'row_to_reset' is assigned a value that is never used. [unreadVariable]
[core/pack/interaction_graph/SymmLinMemInteractionGraph.cc:909]: (style) Variable 'row_to_wipe' is assigned a value that is never used. [unreadVariable]
[core/pack/interaction_graph/SymmLinMemInteractionGraph.cc:940]: (style) Condition 'assignment_of_interest' is always false [knownConditionTrueFalse]
[core/pack/interaction_graph/SymmLinMemInteractionGraph.cc:959]: (style) Condition 'assignment_of_interest' is always false [knownConditionTrueFalse]
[core/pack/interaction_graph/SymmLinMemInteractionGraph.cc:972]: (style) Condition 'assignment_of_interest' is always false [knownConditionTrueFalse]
[core/pack/interaction_graph/SymmLinMemInteractionGraph.cc:985]: (style) Condition 'assignment_of_interest' is always false [knownConditionTrueFalse]
[core/pack/interaction_graph/SymmLinMemInteractionGraph.cc:994]: (style) Condition 'assignment_of_interest' is always false [knownConditionTrueFalse]
[core/pack/interaction_graph/SymmMinimalistInteractionGraph.cc:608]: (warning) Member variable 'SymmMinimalistEdge::store_rpes_' is not initialized in the constructor. [uninitMemberVar]
[core/pack/interaction_graph/SymmOnTheFlyInteractionGraph.cc:1002]: (style) C-style pointer casting [cstyleCast]
[core/pack/interaction_graph/SymmOnTheFlyInteractionGraph.cc:1014]: (style) C-style pointer casting [cstyleCast]
[core/pack/interaction_graph/SymmOnTheFlyInteractionGraph.cc:968]: (style) C-style pointer casting [cstyleCast]
[core/pack/interaction_graph/SymmOnTheFlyInteractionGraph.cc:988]: (style) C-style pointer casting [cstyleCast]
[core/pack/interaction_graph/SymmOnTheFlyInteractionGraph.hh:625]: (warning) Assert statement calls a function which may have desired side effects: 'get_incident_edge'. [assertWithSideEffect]
[core/pack/interaction_graph/SymmOnTheFlyInteractionGraph.hh:641]: (warning) Assert statement calls a function which may have desired side effects: 'get_adjacent_node'. [assertWithSideEffect]
[core/pack/interaction_graph/SymmOnTheFlyInteractionGraph.hh:658]: (warning) Assert statement calls a function which may have desired side effects: 'get_owner'. [assertWithSideEffect]
[core/pack/min_pack.cc:1069]: (style) The scope of the variable 'n_discreps' can be reduced. [variableScope]
[core/pack/min_pack.cc:1219]: (style) Variable 'packer_neighbor_graph' is assigned a value that is never used. [unreadVariable]
[core/pack/min_pack.cc:592]: (style) The scope of the variable 'n_discreps' can be reduced. [variableScope]
[core/pack/pack_missing_sidechains.cc:90]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/pack/pack_rotamers.cc:88]: (style) Variable 'working_task' is assigned a value that is never used. [unreadVariable]
[core/pack/pack_rotamers.cc:91]: (style) Variable 'working_task' is assigned a value that is never used. [unreadVariable]
[core/pack/palette/CustomBaseTypePackerPalette.cc:89]: (style) Parameter 'attlist' can be declared with const [constParameter]
[core/pack/rotamer_set/ContinuousRotamerSet.cc:326]: (performance) Variable 'total_residue_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/pack/rotamer_set/rna_rotamer_building_functions.cc:269] -> [core/pack/rotamer_set/rna_rotamer_building_functions.cc:273]: (warning) Identical condition 'n_proton_chi==0', second condition is always false [identicalConditionAfterEarlyExit]
[core/pack/rotamer_set/RotamerSets.cc:310] -> [core/pack/rotamer_set/RotamerSets.cc:311]: (style) Argument 'copies[jj]' to function residue is always 1 [constArgument]
[core/pack/rotamer_set/RotamerSets.cc:367]: (warning) Assert statement calls a function which may have desired side effects: 'offset_data_up_to_date'. [assertWithSideEffect]
[core/pack/rotamer_set/WaterAnchorInfo.cc:120]: (performance) Function parameter 'bonds' should be passed by const reference. [passedByValue]
[core/pack/rtmin.cc:99]: (warning) Member variable 'RTMin::cartesian_' is not initialized in the constructor. [uninitMemberVar]
[core/pack/rtmin.cc:99]: (warning) Member variable 'RTMin::nonideal_' is not initialized in the constructor. [uninitMemberVar]
[core/pack/scmin/SCMinMinimizerMap.hh:203] -> [core/pack/scmin/CartSCMinMinimizerMap.hh:184]: (warning) The class 'CartSCMinMinimizerMap' defines member variable with name 'domain_map_' also defined in its parent class 'SCMinMinimizerMap'. [duplInheritedMember]
[core/pack/task/IGEdgeReweightContainer.cc:45]: (performance) Variable 'nres_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/pack/task/operation/parsing_utilities.cc:103]: (style) Parameter 'attributes' can be declared with const [constParameter]
[core/pack/task/operation/ReplicateTask.cc:48]: (performance) Variable 'native_task_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/pack/task/operation/ResFilters.cc:805]: (warning) Member variable 'ChainIs::chain_' is not initialized in the constructor. [uninitMemberVar]
[core/pack/task/operation/TaskOperations.cc:1101]: (performance) Variable 'options_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/pack/task/operation/TaskOperations.cc:1679]: (style) Parameter 'options' can be declared with const [constParameter]
[core/pack/task/operation/TaskOperations.cc:204]: (performance) Variable 'base_types_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/pack/task/operation/TaskOperations.cc:334]: (performance) Variable 'properties_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/pack/task/operation/TaskOperations.cc:470]: (performance) Variable 'properties_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/pack/task/operation/TaskOperations.cc:74]: (performance) Variable 'base_types_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/pack/task/PackerTask_.cc:1132]: (style) Condition 'old_pos!=0' is always true [knownConditionTrueFalse]
[core/pack/task/ResfileReader.cc:667]: (style) Unused variable: basename [unusedVariable]
[core/pack/task/ResfileReader.cc:796]: (style) Unused variable: basename [unusedVariable]
[core/pack/task/ResfileReader.hh:54]: (performance) Function parameter 'message' should be passed by const reference. [passedByValue]
[core/pack/task/ResfileReader.hh:605]: (warning) Member variable 'EX::chi_sample_level_' is not initialized in the constructor. [uninitMemberVar]
[core/pack/task/ResidueLevelTask_.cc:322]: (style) Parameter 'read_options' can be declared with const [constParameter]
[core/pack/task/residue_selector/ClashBasedShellSelector.cc:326]: (performance) Function parameter 'resnums' should be passed by const reference. [passedByValue]
[core/pack/task/residue_selector/ClashBasedShellSelector.cc:357]: (performance) Function parameter 'resnums' should be passed by const reference. [passedByValue]
[core/pack/task/residue_selector/ClashBasedShellSelector.cc:579]: (performance) Function parameter 'resnum_list' should be passed by const reference. [passedByValue]
[core/pack/task/xml_util.cc:155]: (style) Parameter 'attributes' can be declared with const [constParameter]
[core/pack/task/xml_util.cc:167]: (style) Parameter 'attributes' can be declared with const [constParameter]
[core/pose/annotated_sequence.cc:181]: (style) The scope of the variable 'is_lower_terminus' can be reduced. [variableScope]
[core/pose/annotated_sequence.cc:181]: (style) The scope of the variable 'is_upper_terminus' can be reduced. [variableScope]
[core/pose/carbohydrates/util.cc:1170]: (style) Variable 'resnums_to_delete' is assigned a value that is never used. [unreadVariable]
[core/pose/carbohydrates/util.cc:1173]: (style) Variable 'i' is assigned a value that is never used. [unreadVariable]
[core/pose/carbohydrates/util.cc:1201]: (style) Variable 'resnums_to_delete' is assigned a value that is never used. [unreadVariable]
[core/pose/carbohydrates/util.cc:1207]: (style) Variable 'i' is assigned a value that is never used. [unreadVariable]
[core/pose/carbohydrates/util.cc:1239]: (style) Parameter 'children_residues' can be declared with const [constParameter]
[core/pose/carbohydrates/util.cc:966]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/pose/chains_util.cc:163]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/pose/chains_util.cc:476]: (style) Variable 'pdb_info' is assigned a value that is never used. [unreadVariable]
[core/pose/full_model_info/FullModelParameters.cc:160]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[core/pose/full_model_info/FullModelParameters.cc:643]: (style) Condition 'ok' is always true [knownConditionTrueFalse]
[core/pose/full_model_info/util.cc:548]: (style) Variable 'full_model_info' can be declared with const [constVariable]
[core/pose/metrics/simple_calculators/InterfaceDeltaEnergeticsCalculator.cc:107]: (performance) Variable 'name_of_InterfaceNeighborDefinitionCalculator_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/pose/metrics/simple_calculators/SasaCalculator2.cc:57]: (performance) Variable 'sasa_calc_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/pose/ncbb/util.cc:103]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/pose/PDBInfo.hh:550]: (performance) Function parameter 'crystinfoin' should be passed by const reference. [passedByValue]
[core/pose/PDBInfo.hh:595]: (performance) Function parameter 'chain_sequences' should be passed by const reference. [passedByValue]
[core/pose/ref_pose.cc:63]: (style) Parameter 'attributes' can be declared with const [constParameter]
[core/pose/rna/RNA_BasePairClassifier.cc:411]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/pose/rna/RNA_DataInfo.hh:57]: (performance) Variable 'position_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/pose/rna/RNA_DataInfo.hh:58]: (performance) Variable 'edge_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/pose/rna/RNA_DataInfo.hh:59]: (performance) Variable 'weight_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/pose/rna/RNA_DataInfo.hh:93]: (performance) Variable 'position_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/pose/rna/RNA_DataInfo.hh:95]: (performance) Variable 'value_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/pose/rna/RNA_SecStruct.cc:265]: (style) Variable 'spacer_positions_sequence' is assigned a value that is never used. [unreadVariable]
[core/pose/rna/RNA_SecStruct.cc:317]: (style) Variable 'stem_count' is assigned a value that is never used. [unreadVariable]
[core/pose/rna/util.cc:2419]: (style) Same iterators expression are used for algorithm. [sameIteratorExpression]
[core/pose/rna/util.cc:2438]: (style) Same iterators expression are used for algorithm. [sameIteratorExpression]
[core/pose/rna/util.cc:986]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/pose/rna/util.hh:64] -> [core/pose/rna/util.cc:953]: (style) Local variable 'is_cutpoint_open' shadows outer function [shadowFunction]
[core/pose/selection.cc:367]: (style) Parameter 'attlist' can be declared with const [constParameter]
[core/pose/selection.cc:383]: (style) Parameter 'attlist' can be declared with const [constParameter]
[core/pose/selection.cc:400]: (style) Parameter 'attlist' can be declared with const [constParameter]
[core/pose/symmetry/util.cc:570]: (style) Variable 'pdb_info_target' is assigned a value that is never used. [unreadVariable]
[core/pose/util.cc:811]: (style) Variable 'f_src' is assigned a value that is never used. [unreadVariable]
[core/pose/util.cc:811]: (style) Variable 'f_tgt' is assigned a value that is never used. [unreadVariable]
[core/scoring/APBSWrapper.cc:209]: (warning) Member variable 'I_PARAM::array' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/APBSWrapper.cc:70] -> [core/scoring/APBSWrapper.cc:122]: (style) The expression 'ret != 0' is always false. [knownConditionTrueFalse]
[core/scoring/atomic_depth/AtomicDepth.cc:602]: (style) Redundant condition: vp_[i][j][k].isdone. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[core/scoring/bin_transitions/BinTransitionData.hh:487]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[core/scoring/bin_transitions/BinTransitionData.hh:496]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[core/scoring/carbohydrates/CHIEnergyFunction.cc:173]: (style) Variable 'phi_linkages[2]' is assigned a value that is never used. [unreadVariable]
[core/scoring/carbohydrates/CHIEnergyFunction.cc:177]: (style) Variable 'psi_linkages[2]' is assigned a value that is never used. [unreadVariable]
[core/scoring/CenHBPotential.cc:73]: (performance) Variable 'cutoff_sr_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/CenHBPotential.cc:74]: (performance) Variable 'cutoff_lr_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/CenRotEnvPairPotential.cc:39]: (performance) Variable 'SIGMOID_SLOPE' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/CenRotEnvPairPotential.cc:40]: (performance) Variable 'cen_dist_cutoff_12_pad' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/CenRotEnvPairPotential.cc:634]: (style) Variable 'cenlist' can be declared with const [constVariable]
[core/scoring/CenRotEnvPairPotential.cc:636]: (style) Variable 'dcenlist' can be declared with const [constVariable]
[core/scoring/ChemicalShiftAnisotropy.cc:125]: (performance) Variable 'All_CSA_lines_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/constraints/AmbiguousConstraint.cc:120]: (style) Variable 'cur_score' is assigned a value that is never used. [unreadVariable]
[core/scoring/constraints/AmbiguousConstraint.cc:165]: (style) Parameter 'emap' can be declared with const [constParameter]
[core/scoring/constraints/AmbiguousConstraint.cc:47]: (performance) Variable 'active_constraint_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/constraints/AmbiguousConstraint.cc:57]: (performance) Variable 'active_constraint_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/constraints/AmbiguousNMRConstraint.cc:264]: (style) Variable 'total_viol' is assigned a value that is never used. [unreadVariable]
[core/scoring/constraints/AmbiguousNMRConstraint.cc:273]: (style) Variable 'total_viol' is assigned a value that is never used. [unreadVariable]
[core/scoring/constraints/AmbiguousNMRDistanceConstraint.cc:772]: (style) Unused variable: type [unusedVariable]
[core/scoring/constraints/BackboneStubConstraint.cc:111]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[core/scoring/constraints/BasePairConstraint.cc:307]: (warning) Member variable 'BasePairConstraint::edge1_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/constraints/BasePairConstraint.cc:307]: (warning) Member variable 'BasePairConstraint::edge2_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/constraints/BasePairConstraint.cc:307]: (warning) Member variable 'BasePairConstraint::orientation_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/constraints/BasePairConstraint.cc:54]: (warning) Member variable 'BasePairConstraint::edge1_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/constraints/BasePairConstraint.cc:54]: (warning) Member variable 'BasePairConstraint::edge2_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/constraints/BasePairConstraint.cc:54]: (warning) Member variable 'BasePairConstraint::orientation_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/constraints/BoundConstraint.cc:183]: (performance) Function parameter 'type' should be passed by const reference. [passedByValue]
[core/scoring/constraints/BoundConstraint.cc:247]: (performance) Function parameter 'type' should be passed by const reference. [passedByValue]
[core/scoring/constraints/BoundConstraint.cc:89]: (style) Condition 'x<lb_' is always true [knownConditionTrueFalse]
[core/scoring/constraints/ConstraintEnergyContainer.cc:335]: (performance) Variable 'cst_graph_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/constraints/ConstraintIO.cc:622]: (error) Uninitialized variable: chain [uninitvar]
[core/scoring/constraints/ConstraintSet.cc:1248] -> [core/scoring/constraints/ConstraintSet.cc:1245]: (style) The statement 'if (sequence_constraints_[ii]!=other.sequence_constraints_[ii]) sequence_constraints_[ii]=other.sequence_constraints_[ii]' is logically equivalent to 'sequence_constraints_[ii]=other.sequence_constraints_[ii]'. [duplicateConditionalAssign]
[core/scoring/constraints/ConstraintSet.cc:242] -> [core/scoring/constraints/ConstraintSet.cc:240]: (style) The statement 'if (sequence_constraints_[ii]!=rhs.sequence_constraints_[ii]) sequence_constraints_[ii]=rhs.sequence_constraints_[ii]' is logically equivalent to 'sequence_constraints_[ii]=rhs.sequence_constraints_[ii]'. [duplicateConditionalAssign]
[core/scoring/constraints/KofNConstraint.cc:112]: (performance) Variable 'K_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/constraints/KofNConstraint.cc:208]: (style) Parameter 'emap' can be declared with const [constParameter]
[core/scoring/constraints/KofNConstraint.cc:99]: (performance) Variable 'K_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/constraints/util.cc:191]: (style) Parameter 'opts' can be declared with const [constParameter]
[core/scoring/constraints/util.cc:247]: (style) Parameter 'opts' can be declared with const [constParameter]
[core/scoring/constraints/util.cc:595]: (style) Parameter 'count_matrix' can be declared with const [constParameter]
[core/scoring/cryst/PhenixInterface.hh:108]: (style) Unused private function: 'PhenixInterface::stealBfactorsFromFile' [unusedPrivateFunction]
[core/scoring/cryst/PhenixInterface.hh:111]: (style) Unused private function: 'PhenixInterface::initialize_target_evaluator' [unusedPrivateFunction]
[core/scoring/cryst/PhenixInterface.hh:92]: (performance) Function parameter 'adp_strat' should be passed by const reference. [passedByValue]
[core/scoring/cryst/PhenixInterface.hh:95]: (performance) Function parameter 'tgt_val' should be passed by const reference. [passedByValue]
[core/scoring/DipolarCoupling.cc:126]: (performance) Variable 'All_DC_lines_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/disulfides/FullatomDisulfidePotential.cc:163]: (performance) Variable 'mest_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/disulfides/FullatomDisulfidePotential.hh:73]: (performance) Variable 'd_location' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/disulfides/FullatomDisulfidePotential.hh:73]: (performance) Variable 'd_scale' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/disulfides/FullatomDisulfidePotential.hh:73]: (performance) Variable 'd_shape' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/disulfides/FullatomDisulfidePotential.hh:75]: (performance) Variable 'a_kappa' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/disulfides/FullatomDisulfidePotential.hh:75]: (performance) Variable 'a_logA' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/disulfides/FullatomDisulfidePotential.hh:75]: (performance) Variable 'a_mu' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/disulfides/FullatomDisulfidePotential.hh:77]: (performance) Variable 'dss_kappa1' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/disulfides/FullatomDisulfidePotential.hh:77]: (performance) Variable 'dss_logA1' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/disulfides/FullatomDisulfidePotential.hh:77]: (performance) Variable 'dss_mixed_kappa1' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/disulfides/FullatomDisulfidePotential.hh:77]: (performance) Variable 'dss_mixed_logA1' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/disulfides/FullatomDisulfidePotential.hh:77]: (performance) Variable 'dss_mixed_mu1' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/disulfides/FullatomDisulfidePotential.hh:77]: (performance) Variable 'dss_mu1' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/disulfides/FullatomDisulfidePotential.hh:78]: (performance) Variable 'dss_kappa2' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/disulfides/FullatomDisulfidePotential.hh:78]: (performance) Variable 'dss_logA2' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/disulfides/FullatomDisulfidePotential.hh:78]: (performance) Variable 'dss_mixed_kappa2' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/disulfides/FullatomDisulfidePotential.hh:78]: (performance) Variable 'dss_mixed_logA2' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/disulfides/FullatomDisulfidePotential.hh:78]: (performance) Variable 'dss_mixed_mu2' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/disulfides/FullatomDisulfidePotential.hh:78]: (performance) Variable 'dss_mu2' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/disulfides/FullatomDisulfidePotential.hh:80]: (performance) Variable 'dcs_kappa1' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/disulfides/FullatomDisulfidePotential.hh:80]: (performance) Variable 'dcs_logA1' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/disulfides/FullatomDisulfidePotential.hh:80]: (performance) Variable 'dcs_mu1' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/disulfides/FullatomDisulfidePotential.hh:81]: (performance) Variable 'dcs_kappa2' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/disulfides/FullatomDisulfidePotential.hh:81]: (performance) Variable 'dcs_logA2' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/disulfides/FullatomDisulfidePotential.hh:81]: (performance) Variable 'dcs_mu2' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/disulfides/FullatomDisulfidePotential.hh:82]: (performance) Variable 'dcs_kappa3' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/disulfides/FullatomDisulfidePotential.hh:82]: (performance) Variable 'dcs_logA3' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/disulfides/FullatomDisulfidePotential.hh:82]: (performance) Variable 'dcs_mu3' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/dna/DNATorsionPotential.cc:125]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/scoring/dna/DNATorsionPotential.cc:179]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/scoring/dssp/Dssp.cc:179]: (style) Parameter 'secstruct' can be declared with const [constParameter]
[core/scoring/dssp/Dssp.cc:69]: (performance) Variable 'pair_set_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/dssp/StrandPairing.cc:836]: (style) Variable 'bulge' is assigned a value that is never used. [unreadVariable]
[core/scoring/electron_density_atomwise/ElectronDensityAtomwise.cc:134]: (style) The scope of the variable 'N' can be reduced. [variableScope]
[core/scoring/electron_density_atomwise/ElectronDensityAtomwise.cc:763]: (style) Parameter 'score' can be declared with const [constParameter]
[core/scoring/electron_density_atomwise/ElectronDensityAtomwise.cc:778]: (style) Variable 'c000' can be declared with const [constVariable]
[core/scoring/electron_density_atomwise/ElectronDensityAtomwise.cc:779]: (style) Variable 'c100' can be declared with const [constVariable]
[core/scoring/electron_density_atomwise/ElectronDensityAtomwise.cc:780]: (style) Variable 'c010' can be declared with const [constVariable]
[core/scoring/electron_density_atomwise/ElectronDensityAtomwise.cc:781]: (style) Variable 'c001' can be declared with const [constVariable]
[core/scoring/electron_density_atomwise/ElectronDensityAtomwise.cc:782]: (style) Variable 'c110' can be declared with const [constVariable]
[core/scoring/electron_density_atomwise/ElectronDensityAtomwise.cc:783]: (style) Variable 'c101' can be declared with const [constVariable]
[core/scoring/electron_density_atomwise/ElectronDensityAtomwise.cc:784]: (style) Variable 'c011' can be declared with const [constVariable]
[core/scoring/electron_density_atomwise/ElectronDensityAtomwise.cc:785]: (style) Variable 'c111' can be declared with const [constVariable]
[core/scoring/electron_density_atomwise/ElectronDensityAtomwise.cc:801]: (style) Parameter 'score' can be declared with const [constParameter]
[core/scoring/electron_density_atomwise/ElectronDensityAtomwise.cc:80]: (performance) Variable 'grid' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/electron_density_atomwise/ElectronDensityAtomwise.cc:817]: (style) Variable 'c000' can be declared with const [constVariable]
[core/scoring/electron_density_atomwise/ElectronDensityAtomwise.cc:818]: (style) Variable 'c100' can be declared with const [constVariable]
[core/scoring/electron_density_atomwise/ElectronDensityAtomwise.cc:819]: (style) Variable 'c010' can be declared with const [constVariable]
[core/scoring/electron_density_atomwise/ElectronDensityAtomwise.cc:820]: (style) Variable 'c001' can be declared with const [constVariable]
[core/scoring/electron_density_atomwise/ElectronDensityAtomwise.cc:821]: (style) Variable 'c110' can be declared with const [constVariable]
[core/scoring/electron_density_atomwise/ElectronDensityAtomwise.cc:822]: (style) Variable 'c101' can be declared with const [constVariable]
[core/scoring/electron_density_atomwise/ElectronDensityAtomwise.cc:823]: (style) Variable 'c011' can be declared with const [constVariable]
[core/scoring/electron_density_atomwise/ElectronDensityAtomwise.cc:824]: (style) Variable 'c111' can be declared with const [constVariable]
[core/scoring/electron_density_atomwise/ElectronDensityAtomwise.cc:867]: (style) Parameter 'data' can be declared with const [constParameter]
[core/scoring/electron_density/ElectronDensity.cc:2210] -> [core/scoring/electron_density/ElectronDensity.cc:2216]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[core/scoring/electron_density/ElectronDensity.cc:2554]: (style) Parameter 'maskC' can be declared with const [constParameter]
[core/scoring/electron_density/ElectronDensity.hh:194]: (style) Parameter 'rhoC' can be declared with const [constParameter]
[core/scoring/EnergyGraph.cc:44]: (warning) Member variable 'EnergyNode::moved_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/EnergyMap.cc:42] -> [core/scoring/EnergyMap.cc:41]: (warning) Either the condition 'ii!=n_score_types' is redundant or the array 'map_[443]' is accessed at index 443, which is out of bounds. [arrayIndexOutOfBoundsCond]
[core/scoring/EnvPairPotential.cc:321]: (style) Variable 'cenlist' can be declared with const [constVariable]
[core/scoring/etable/count_pair/CountPairFactory.cc:156]: (style) Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
[core/scoring/etable/count_pair/CountPairFactory.cc:202]: (style) Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
[core/scoring/etable/Etable.cc:483] -> [core/scoring/etable/Etable.cc:483]: (warning) The address of local variable 'ljatr_' might be accessed at non-zero index. [objectIndex]
[core/scoring/etable/Etable.cc:483] -> [core/scoring/etable/Etable.cc:484]: (warning) The address of local variable 'ljatr_' might be accessed at non-zero index. [objectIndex]
[core/scoring/etable/Etable.cc:483] -> [core/scoring/etable/Etable.cc:485]: (warning) The address of local variable 'ljatr_' might be accessed at non-zero index. [objectIndex]
[core/scoring/etable/Etable.cc:483] -> [core/scoring/etable/Etable.cc:486]: (warning) The address of local variable 'ljatr_' might be accessed at non-zero index. [objectIndex]
[core/scoring/etable/Etable.cc:634]: (style) Variable 'ljatr_full' is assigned a value that is never used. [unreadVariable]
[core/scoring/etable/Etable.cc:635]: (style) Variable 'dljatr_full' is assigned a value that is never used. [unreadVariable]
[core/scoring/etable/Etable.cc:636]: (style) Variable 'ljrep_full' is assigned a value that is never used. [unreadVariable]
[core/scoring/etable/Etable.cc:637]: (style) Variable 'dljrep_full' is assigned a value that is never used. [unreadVariable]
[core/scoring/etable/Etable.cc:638]: (style) Variable 'fasol1_full' is assigned a value that is never used. [unreadVariable]
[core/scoring/etable/Etable.cc:639]: (style) Variable 'fasol2_full' is assigned a value that is never used. [unreadVariable]
[core/scoring/etable/Etable.cc:640]: (style) Variable 'dfasol_full' is assigned a value that is never used. [unreadVariable]
[core/scoring/etable/Etable.cc:641]: (style) Variable 'dfasol1_full' is assigned a value that is never used. [unreadVariable]
[core/scoring/etable/Etable.cc:731]: (style) Condition 'mod_hhrep' is always false [knownConditionTrueFalse]
[core/scoring/etable/EtableEnergy.cc:305]: (style) Same expression on both sides of '||'. [duplicateExpression]
[core/scoring/etable/Etable.hh:340] -> [core/scoring/etable/Etable.hh:456]: (style) Local variable 'atom_set' shadows outer function [shadowFunction]
[core/scoring/etable/Etable.hh:989]: (style) Same value in both branches of ternary operator. [duplicateValueTernary]
[core/scoring/etable/EtableOptions.cc:203]: (style) Parameter 'attributes' can be declared with const [constParameter]
[core/scoring/etable/EtableOptions.cc:238]: (style) Parameter 'options_read' can be declared with const [constParameter]
[core/scoring/facts/FACTSPotential.cc:1563]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/scoring/facts/FACTSResidue.hh:181]: (warning) Member variable 'FACTSResidueInfo::changed_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/facts/FACTSResidue.hh:181]: (warning) Member variable 'FACTSResidueInfo::enumeration_shell_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/fiber_diffraction/CentroidScatter.cc:42]: (warning) Assert statement calls a function which may have desired side effects: 'data'. [assertWithSideEffect]
[core/scoring/fiber_diffraction/CentroidScatter.cc:43]: (warning) Assert statement calls a function which may have desired side effects: 'data'. [assertWithSideEffect]
[core/scoring/fiber_diffraction/CentroidScatter.hh:39]: (style) Parameter 'sig_centroid_in' can be declared with const [constParameter]
[core/scoring/fiber_diffraction/FAScatter.cc:40]: (warning) Assert statement calls a function which may have desired side effects: 'data'. [assertWithSideEffect]
[core/scoring/fiber_diffraction/FAScatter.cc:41]: (warning) Assert statement calls a function which may have desired side effects: 'data'. [assertWithSideEffect]
[core/scoring/fiber_diffraction/FAScatter.hh:39]: (style) Parameter 'form_factors_in' can be declared with const [constParameter]
[core/scoring/fiber_diffraction/hankel_kiss_fft.cc:258]: (style) Parameter 'hankel_in' can be declared with const [constParameter]
[core/scoring/fiber_diffraction/hankel_kiss_fft.cc:266]: (style) C-style pointer casting [cstyleCast]
[core/scoring/fiber_diffraction/util.cc:283]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/scoring/fiber_diffraction/util.cc:328]: (style) Variable 'num_atoms' is assigned a value that is never used. [unreadVariable]
[core/scoring/fiber_diffraction/util.cc:453]: (style) Parameter 'structure_cutoff' can be declared with const [constParameter]
[core/scoring/fiber_diffraction/util_ndft.cc:104]: (style) Parameter 'total_rvals' can be declared with const [constParameter]
[core/scoring/fiber_diffraction/util_ndft.cc:118]: (style) Parameter 'fout' can be declared with const [constParameter]
[core/scoring/fiber_diffraction/util_ndft.cc:34]: (style) Parameter 'lmax' can be declared with const [constParameter]
[core/scoring/fiber_diffraction/util_ndft.cc:37]: (style) Parameter 'fourier_out' can be declared with const [constParameter]
[core/scoring/fiber_diffraction/xray_scattering.hh:96] -> [core/scoring/fiber_diffraction/xray_scattering.hh:82]: (style) Local variable 's' shadows outer function [shadowFunction]
[core/scoring/func/MinMultiHarmonicFunc.cc:42]: (performance) Variable 'n_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/GenericBondedPotential.cc:155]: (style) The class 'BondOrderParser' does not have a constructor although it has private member variables. [noConstructor]
[core/scoring/GenericBondedPotential.cc:2494]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[core/scoring/GenericBondedPotential.cc:2496]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[core/scoring/GenericBondedPotential.cc:332]: (performance) Function parameter 'input' should be passed by const reference. [passedByValue]
[core/scoring/GenericBondedPotential.cc:415]: (performance) Function parameter 'keyword' should be passed by const reference. [passedByValue]
[core/scoring/GenericBondedPotential.hh:137]: (performance) Function parameter 'torsion_type_in' should be passed by const reference. [passedByValue]
[core/scoring/GenericBondedPotential.hh:261]: (performance) Function parameter 'atm1' should be passed by const reference. [passedByValue]
[core/scoring/GenericBondedPotential.hh:261]: (performance) Function parameter 'atm2' should be passed by const reference. [passedByValue]
[core/scoring/GenericBondedPotential.hh:263]: (performance) Function parameter 'atm3' should be passed by const reference. [passedByValue]
[core/scoring/GenericBondedPotential.hh:263]: (performance) Function parameter 'atm4' should be passed by const reference. [passedByValue]
[core/scoring/geometric_solvation/GeometricSolEnergyEvaluator.cc:106]: (warning) Member variable 'GeometricSolEnergyEvaluator::path_distance_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/geometric_solvation/GeometricSolEnergyEvaluator.cc:1158]: (style) Variable 'base2' is assigned a value that is never used. [unreadVariable]
[core/scoring/geometric_solvation/GeometricSolEnergyEvaluator.cc:1300]: (style) Variable 'm' is assigned a value that is never used. [unreadVariable]
[core/scoring/geometric_solvation/GeometricSolEnergyEvaluator.cc:1301]: (style) Variable 'n' is assigned a value that is never used. [unreadVariable]
[core/scoring/geometric_solvation/GeometricSolEnergyEvaluator.cc:93]: (warning) Member variable 'GeometricSolEnergyEvaluator::path_distance_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/hbonds/HBondEnergy.cc:1578]: (style) Same expression in both branches of ternary operator. [duplicateExpressionTernary]
[core/scoring/hbonds/HBondEnergy.cc:661]: (style) Variable 'hbpairdat' is assigned a value that is never used. [unreadVariable]
[core/scoring/hbonds/HBondOptions.cc:165]: (style) Parameter 'option_list' can be declared with const [constParameter]
[core/scoring/hbonds/HBondOptions.cc:329]: (style) Parameter 'attributes' can be declared with const [constParameter]
[core/scoring/hbonds/hbonds.cc:1214]: (style) Parameter 'burial' can be declared with const [constParameter]
[core/scoring/interface_/DDPlookup.cc:125]: (warning) Class 'DDPlookup' does not have a copy constructor which is recommended since it has dynamic memory/resource allocation(s). [noCopyConstructor]
[core/scoring/interface_/DDPlookup.cc:125]: (warning) Class 'DDPlookup' does not have a operator= which is recommended since it has dynamic memory/resource allocation(s). [noOperatorEq]
[core/scoring/memb_etable/MembEtable.cc:316] -> [core/scoring/memb_etable/MembEtable.cc:316]: (warning) The address of local variable 'solv1_' might be accessed at non-zero index. [objectIndex]
[core/scoring/memb_etable/MembEtable.cc:316] -> [core/scoring/memb_etable/MembEtable.cc:317]: (warning) The address of local variable 'solv1_' might be accessed at non-zero index. [objectIndex]
[core/scoring/memb_etable/MembEtable.cc:316] -> [core/scoring/memb_etable/MembEtable.cc:318]: (warning) The address of local variable 'solv1_' might be accessed at non-zero index. [objectIndex]
[core/scoring/memb_etable/MembEtable.cc:316] -> [core/scoring/memb_etable/MembEtable.cc:319]: (warning) The address of local variable 'solv1_' might be accessed at non-zero index. [objectIndex]
[core/scoring/memb_etable/MembEtable.cc:316] -> [core/scoring/memb_etable/MembEtable.cc:320]: (warning) The address of local variable 'solv1_' might be accessed at non-zero index. [objectIndex]
[core/scoring/memb_etable/MembEtable.cc:388]: (style) Condition 'mod_hhrep' is always false [knownConditionTrueFalse]
[core/scoring/Membrane_FAPotential.cc:121]: (style) Variable 'cenlist' can be declared with const [constVariable]
[core/scoring/Membrane_FAPotential.cc:124]: (style) Variable 'membrane_embed' can be declared with const [constVariable]
[core/scoring/Membrane_FAPotential.cc:126]: (style) Variable 'membrane_faembed' can be declared with const [constVariable]
[core/scoring/Membrane_FAPotential.hh:70]: (warning) Member variable 'Membrane_FAEmbed::Fa_Membed_update_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/membrane/MembraneData.cc:97]: (style) Variable 'cenlist' can be declared with const [constVariable]
[core/scoring/MembranePotential.cc:300]: (style) Variable 'cenlist' can be declared with const [constVariable]
[core/scoring/MembranePotential.cc:302]: (style) Variable 'membrane_embed' can be declared with const [constVariable]
[core/scoring/MembranePotential.cc:921]: (style) Parameter 'n' can be declared with const [constParameter]
[core/scoring/methods/CartBondedParameters.hh:113]: (performance) Function parameter 'tag_in' should be passed by const reference. [passedByValue]
[core/scoring/methods/CartBondedParameters.hh:74]: (performance) Variable 'K0_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/methods/CartBondedParameters.hh:75]: (performance) Variable 'mu0_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/methods/CartBondedParameters.hh:76]: (performance) Variable 'period_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/methods/CartBondedParameters.hh:80]: (performance) Variable 'mu0_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/methods/CartBondedParameters.hh:81]: (performance) Variable 'K0_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/methods/CartBondedParameters.hh:82]: (performance) Variable 'period_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/methods/EnergyMethodOptions.cc:745]: (performance) Function parameter 'setting' should be passed by const reference. [passedByValue]
[core/scoring/methods/EnergyMethodOptions.cc:800]: (performance) Function parameter 'setting' should be passed by const reference. [passedByValue]
[core/scoring/methods/MMLJEnergyInter.hh:225]: (style) Parameter 'path_dist' can be declared with const [constParameter]
[core/scoring/methods/MMLJEnergyInter.hh:240]: (style) Parameter 'path_dist' can be declared with const [constParameter]
[core/scoring/methods/MMLJEnergyInter.hh:254]: (style) Parameter 'path_dist' can be declared with const [constParameter]
[core/scoring/methods/MMLJEnergyInter.hh:268]: (style) Parameter 'path_dist' can be declared with const [constParameter]
[core/scoring/mhc_epitope_energy/MHCEpitopeEnergySetup.hh:122]: (performance) Function parameter 'peptide' should be passed by const reference. [passedByValue]
[core/scoring/mm/MMBondAngleLibrary.cc:63]: (performance) Variable 'mm_atom_set_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/mm/MMBondLengthLibrary.cc:58]: (performance) Variable 'mm_atom_set_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/mm/MMLJLibrary.cc:59]: (performance) Variable 'mm_atom_set_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/mm/MMTorsionLibrary.cc:61]: (performance) Variable 'mm_atom_set_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/motif/motif_hash_stuff.cc:1125]: (style) Variable 'el' is assigned a value that is never used. [unreadVariable]
[core/scoring/motif/motif_hash_stuff.cc:1125]: (style) Variable 'hl' is assigned a value that is never used. [unreadVariable]
[core/scoring/motif/motif_hash_stuff.cc:1125]: (style) Variable 'll' is assigned a value that is never used. [unreadVariable]
[core/scoring/motif/motif_hash_stuff.cc:1125]: (style) Variable 'pp' is assigned a value that is never used. [unreadVariable]
[core/scoring/motif/motif_hash_stuff.cc:1125]: (style) Variable 'totscore' is assigned a value that is never used. [unreadVariable]
[core/scoring/motif/motif_hash_stuff.cc:1125]: (style) Variable 'totsqstscore' is assigned a value that is never used. [unreadVariable]
[core/scoring/motif/motif_hash_stuff.cc:1142]: (style) Argument '-2.0*err' to function exp is always 0 [constArgument]
[core/scoring/motif/motif_hash_stuff.cc:1147]: (style) Variable 'totscore' is assigned a value that is never used. [unreadVariable]
[core/scoring/motif/motif_hash_stuff.cc:1148]: (style) Variable 'totsqstscore' is assigned a value that is never used. [unreadVariable]
[core/scoring/motif/motif_hash_stuff.cc:1154]: (style) Variable 'pp' is assigned a value that is never used. [unreadVariable]
[core/scoring/motif/motif_hash_stuff.cc:1157]: (style) Variable 'hl' is assigned a value that is never used. [unreadVariable]
[core/scoring/motif/motif_hash_stuff.cc:1159]: (style) Variable 'el' is assigned a value that is never used. [unreadVariable]
[core/scoring/motif/motif_hash_stuff.cc:1160]: (style) Variable 'll' is assigned a value that is never used. [unreadVariable]
[core/scoring/motif/motif_hash_stuff.cc:1228]: (style) Argument '-2.0*err' to function exp is always 0 [constArgument]
[core/scoring/motif/motif_hash_stuff.cc:1237]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[core/scoring/motif/motif_hash_stuff.cc:2102]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[core/scoring/motif/motif_hash_stuff.cc:2111]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[core/scoring/motif/motif_hash_stuff.cc:2160]: (style) C-style pointer casting [cstyleCast]
[core/scoring/motif/motif_hash_stuff.cc:326]: (style) Variable 'rt6[6]' is assigned a value that is never used. [unreadVariable]
[core/scoring/motif/motif_hash_stuff.hh:332]: (warning) Member variable 'MotifHit::index' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/motif/motif_hash_stuff.hh:333]: (warning) Member variable 'MotifHit::index' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/motif/motif_hash_stuff.hh:86]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[core/scoring/motif/motif_hash_stuff.hh:87]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[core/scoring/motif/util.cc:397]: (performance) Function parameter 'fname' should be passed by const reference. [passedByValue]
[core/scoring/motif/util.cc:407]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[core/scoring/motif/util.cc:415] -> [core/scoring/motif/util.cc:416]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[core/scoring/motif/util.cc:423] -> [core/scoring/motif/util.cc:424]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[core/scoring/motif/xfrags.cc:282]: (style) Variable 'rt6[6]' is assigned a value that is never used. [unreadVariable]
[core/scoring/motif/xfrags.cc:451]: (style) Parameter 'in' can be declared with const [constParameter]
[core/scoring/MultipoleElecPotential.cc:1019]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/scoring/MultipoleElecPotential.cc:1531]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/scoring/MultipoleElecPotential.cc:1554]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/scoring/MultipoleElecPotential.cc:1610]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/scoring/MultipoleElecPotential.cc:1825]: (style) Variable 'multipole_info' is assigned a value that is never used. [unreadVariable]
[core/scoring/MultipoleElecPotential.cc:1926]: (style) Parameter 'rotamer_set' can be declared with const [constParameter]
[core/scoring/MultipoleElecPotential.hh:609]: (style) Parameter 'quadrupole_in' can be declared with const [constParameter]
[core/scoring/NeighborList.cc:213]: (warning) Assert statement calls a function which may have desired side effects: 'atomno'. [assertWithSideEffect]
[core/scoring/NeighborList.cc:232]: (warning) Assert statement calls a function which may have desired side effects: 'atomno'. [assertWithSideEffect]
[core/scoring/nmer/NMerSVMEnergy.cc:325]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[core/scoring/nmer/NMerSVMEnergy.cc:386]: (error) When iseq==seq.size(), seq[iseq] is out of bounds. [stlOutOfBounds]
[core/scoring/nmr/pcs/PCSSingleSet.cc:107]: (performance) Function parameter 'single_pcs_weigting' should be passed by const reference. [passedByValue]
[core/scoring/nmr/pcs/PCSSingleSet.cc:108]: (performance) Function parameter 'computation_type' should be passed by const reference. [passedByValue]
[core/scoring/nmr/pre/PRESingle.cc:53]: (warning) Member variable 'PRESingle::pre_type_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/nmr/pre/PRESingleSet.cc:80]: (performance) Function parameter 'rate' should be passed by const reference. [passedByValue]
[core/scoring/nmr/pre/PRESingleSet.cc:81]: (performance) Function parameter 'single_pre_weigting' should be passed by const reference. [passedByValue]
[core/scoring/nmr/rdc/RDCMultiSet.cc:106]: (performance) Function parameter 'computation_type' should be passed by const reference. [passedByValue]
[core/scoring/nmr/rdc/RDCSingle.cc:53]: (warning) Member variable 'RDCSingle::rdc_type_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/nmr/rdc/RDCSingleSet.cc:77]: (performance) Function parameter 'single_rdc_weighting' should be passed by const reference. [passedByValue]
[core/scoring/nv/NVscore.cc:73]: (performance) Variable 'lower_bound_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/nv/NVscore.cc:74]: (performance) Variable 'upper_bound_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/OmegaTether.cc:320]: (style) Parameter 'x' can be declared with const [constParameter]
[core/scoring/P_AA.cc:106] -> [core/scoring/P_AA.cc:109]: (warning) Identical inner 'if' condition is always true. [identicalInnerCondition]
[core/scoring/P_AA.cc:143] -> [core/scoring/P_AA.cc:146]: (warning) Identical inner 'if' condition is always true. [identicalInnerCondition]
[core/scoring/packing/HolesParams.hh:49]: (performance) Function parameter 'fname' should be passed by const reference. [passedByValue]
[core/scoring/packing/HolesParamsRes.hh:40]: (performance) Function parameter 'fname' should be passed by const reference. [passedByValue]
[core/scoring/packing/PoseBalls.cc:168]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[core/scoring/packing/PoseBalls.cc:262]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[core/scoring/packstat/compute_sasa.cc:1282]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/scoring/packstat/compute_sasa.cc:797]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[core/scoring/packstat/LeeRichards.cc:249]: (style) Parameter 'circle' can be declared with const [constParameter]
[core/scoring/packstat/LeeRichards.cc:307] -> [core/scoring/packstat/LeeRichards.cc:308]: (warning) Either the condition 'circle!=nullptr' is redundant or there is possible null pointer dereference: circle. [nullPointerRedundantCheck]
[core/scoring/packstat/LeeRichards.hh:418]: (performance) Variable 'mnx_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/packstat/LeeRichards.hh:418]: (performance) Variable 'mny_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/packstat/LeeRichards.hh:418]: (performance) Variable 'mxr_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/packstat/LeeRichards.hh:418]: (performance) Variable 'mxx_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/packstat/LeeRichards.hh:418]: (performance) Variable 'mxy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/packstat/LeeRichards.hh:461]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[core/scoring/PairEPotential.cc:69] -> [core/scoring/PairEPotential.cc:86]: (warning) Identical inner 'if' condition is always true. [identicalInnerCondition]
[core/scoring/PairEPotential.hh:58]: (style) Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
[core/scoring/PointWaterPotential.cc:371]: (style) Parameter 'x' can be declared with const [constParameter]
[core/scoring/PointWaterPotential.cc:425]: (style) Parameter 'table' can be declared with const [constParameter]
[core/scoring/PointWaterPotential.hh:41]: (performance) Function parameter 'name1_in' should be passed by const reference. [passedByValue]
[core/scoring/PointWaterPotential.hh:41]: (performance) Function parameter 'name2_in' should be passed by const reference. [passedByValue]
[core/scoring/ProQPotential.cc:153]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/scoring/ProQPotential.cc:154]: (style) Parameter 'feature_vector' can be declared with const [constParameter]
[core/scoring/ProQPotential.cc:155]: (style) Parameter 'score' can be declared with const [constParameter]
[core/scoring/Ramachandran2B.cc:112]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/scoring/Ramachandran2B.cc:64]: (performance) Function parameter 'res' should be passed by const reference. [passedByValue]
[core/scoring/Ramachandran.cc:305]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/scoring/Ramachandran.cc:556]: (style) Variable 'phi' is assigned a value that is never used. [unreadVariable]
[core/scoring/Ramachandran.cc:557]: (style) Variable 'psi' is assigned a value that is never used. [unreadVariable]
[core/scoring/Ramachandran.cc:78]: (performance) Function parameter 'res' should be passed by const reference. [passedByValue]
[core/scoring/ResidualDipolarCoupling.cc:145]: (performance) Variable 'All_RDC_lines_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/ResidualDipolarCoupling.cc:920]: (style) Variable 'prelen' is assigned a value that is never used. [unreadVariable]
[core/scoring/rms_util.cc:1039]: (performance) Function parameter 'p1a' should be passed by const reference. [passedByValue]
[core/scoring/rms_util.cc:1040]: (performance) Function parameter 'p2a' should be passed by const reference. [passedByValue]
[core/scoring/rms_util.cc:894]: (performance) Function parameter 'residue_selection' should be passed by const reference. [passedByValue]
[core/scoring/rna/chemical_shift/RNA_ChemicalShiftPotential.cc:1579] -> [core/scoring/rna/chemical_shift/RNA_ChemicalShiftPotential.cc:1578]: (style) The statement 'if (curr_active!=CS_data.atom_name) curr_active=CS_data.atom_name' is logically equivalent to 'curr_active=CS_data.atom_name'. [duplicateConditionalAssign]
[core/scoring/rna/chemical_shift/RNA_ChemicalShiftPotential.cc:1598]: (performance) Function parameter 'atom_name_whitespace_in' should be passed by const reference. [passedByValue]
[core/scoring/rna/data/RNA_DMS_LowResolutionPotential.cc:154]: (style) Parameter 'DMS_stats' can be declared with const [constParameter]
[core/scoring/rna/data/RNA_DMS_Potential.cc:356]: (warning) Assert statement calls a function which may have desired side effects: 'get_all_derivs'. [assertWithSideEffect]
[core/scoring/rna/RNA_LowResolutionPotential.cc:1044]: (style) Condition 'rna_verbose_' is always false [knownConditionTrueFalse]
[core/scoring/rna/RNA_LowResolutionPotential.cc:1286]: (style) Condition '!base_backbone_check_atom_neighbor_' is always true [knownConditionTrueFalse]
[core/scoring/rna/RNA_LowResolutionPotential.cc:1430]: (style) Condition 'rna_verbose_' is always false [knownConditionTrueFalse]
[core/scoring/rna/RNA_LowResolutionPotential.cc:1689]: (style) Condition 'rna_verbose_' is always false [knownConditionTrueFalse]
[core/scoring/rna/RNA_LowResolutionPotential.cc:1940]: (style) Condition '!rna_repulse_all_' is always false [knownConditionTrueFalse]
[core/scoring/rna/RNA_LowResolutionPotential.cc:1956]: (style) Condition 'rna_verbose_' is always false [knownConditionTrueFalse]
[core/scoring/rna/RNA_LowResolutionPotential.cc:2031]: (style) Condition '!rna_repulse_all_' is always false [knownConditionTrueFalse]
[core/scoring/rna/RNA_LowResolutionPotential.cc:2089]: (style) Condition '!rna_repulse_all_' is always false [knownConditionTrueFalse]
[core/scoring/rna/RNA_LowResolutionPotential.cc:367]: (style) Condition 'interpolate_' is always true [knownConditionTrueFalse]
[core/scoring/rna/RNA_LowResolutionPotential.cc:408]: (style) Condition 'fade_' is always true [knownConditionTrueFalse]
[core/scoring/rna/RNA_LowResolutionPotential.cc:457]: (style) Condition 'fade_' is always true [knownConditionTrueFalse]
[core/scoring/rna/RNA_LowResolutionPotential.cc:502]: (style) Condition 'interpolate_' is always true [knownConditionTrueFalse]
[core/scoring/rna/RNA_LowResolutionPotential.cc:531]: (style) Condition 'interpolate_' is always true [knownConditionTrueFalse]
[core/scoring/rna/RNA_LowResolutionPotential.cc:569]: (style) Condition 'interpolate_' is always true [knownConditionTrueFalse]
[core/scoring/rna/RNA_LowResolutionPotential.cc:605]: (style) Condition 'fade_' is always true [knownConditionTrueFalse]
[core/scoring/rna/RNA_LowResolutionPotential.cc:649]: (style) Condition 'interpolate_' is always true [knownConditionTrueFalse]
[core/scoring/rna/RNA_LowResolutionPotential.cc:702]: (style) Variable 'rna_scoring_info' can be declared with const [constVariable]
[core/scoring/rna/RNA_LowResolutionPotential.cc:714]: (style) Variable 'rna_scoring_info' can be declared with const [constVariable]
[core/scoring/rna/RNA_LowResolutionPotential.cc:725]: (style) Variable 'rna_raw_base_base_info' can be declared with const [constVariable]
[core/scoring/rna/RNA_LowResolutionPotential.cc:817]: (style) Condition 'rna_verbose_' is always false [knownConditionTrueFalse]
[core/scoring/rna/RNA_LowResolutionPotential.cc:864]: (style) Variable 'rna_scoring_info' can be declared with const [constVariable]
[core/scoring/rna/RNA_LowResolutionPotential.cc:865]: (style) Variable 'raw_base_base_info' can be declared with const [constVariable]
[core/scoring/rna/RNA_TorsionPotential.cc:132]: (performance) Variable 'path_to_torsion_files_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/sasa.cc:1141]: (style) Variable 'res_hsasa' is assigned a value that is never used. [unreadVariable]
[core/scoring/sasa.cc:721]: (style) Parameter 'atom_subset' can be declared with const [constParameter]
[core/scoring/sasa/LeGrandSasa.cc:606]: (style) Parameter 'values' can be declared with const [constParameter]
[core/scoring/SASAPotential.hh:178]: (performance) Variable 'pd_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/saxs/FormFactor.cc:35]: (warning) Member variable 'FormFactor::glob_flag_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/saxs/FormFactor.cc:39]: (performance) Variable 'name_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/sc/ElectrostaticComplementarityCalculator.cc:38]: (warning) Member variable 'ElectrostaticComplementarityCalculator::partially_solvated_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/sc/MolecularSurfaceCalculator.cc:1303]: (performance) Variable 'natom' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/sc/MolecularSurfaceCalculator.cc:1304]: (performance) Variable 'nresidue' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/sc/MolecularSurfaceCalculator.cc:1305]: (performance) Variable 'molecule' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/sc/MolecularSurfaceCalculator.cc:917]: (style) Same expression on both sides of '&&'. [duplicateExpression]
[core/scoring/ScoreFunction.cc:1310] -> [core/scoring/ScoreFunction.cc:1351]: (style) Condition 'minimizing' is always false [knownConditionTrueFalse]
[core/scoring/ScoreFunction.cc:1387]: (style) Variable 'energies' can be declared with const [constVariable]
[core/scoring/ScoreFunction.cc:1406] -> [core/scoring/ScoreFunction.cc:1451]: (style) Condition 'minimizing' is always false [knownConditionTrueFalse]
[core/scoring/ScoreFunction.cc:2386]: (warning) Assert statement calls a function which may have desired side effects: 'energies'. [assertWithSideEffect]
[core/scoring/ScoreFunction.cc:3041]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/scoring/ScoreFunction.cc:3054]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/scoring/ScoreFunction.cc:3528]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/scoring/ScoreFunction.cc:3582]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/scoring/ScoreFunction.cc:3616]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/scoring/ScoreFunction.cc:3642]: (style) Parameter 'pose' can be declared with const [constParameter]
[core/scoring/ScoreFunctionFactory.cc:142] -> [core/scoring/ScoreFunctionFactory.cc:159]: (style) Condition 'sf_maybe_talaris' is always true [knownConditionTrueFalse]
[core/scoring/ScoreFunctionFactory.cc:195] -> [core/scoring/ScoreFunctionFactory.cc:223]: (style) Condition 'sf_maybe_beta' is always true [knownConditionTrueFalse]
[core/scoring/ScoringManager.cc:1281]: (style) Variable 'options_local.lj_switch_dis2sigma' is assigned a value that is never used. [unreadVariable]
[core/scoring/sc/ShapeComplementarityCalculator.cc:397]: (style) Variable 'rleft' is assigned a value that is never used. [unreadVariable]
[core/scoring/SecondaryStructurePotential.cc:102]: (warning) Assert statement calls a function which may have desired side effects: 'data'. [assertWithSideEffect]
[core/scoring/SecondaryStructurePotential.cc:103]: (warning) Assert statement calls a function which may have desired side effects: 'data'. [assertWithSideEffect]
[core/scoring/SecondaryStructurePotential.cc:1620]: (style) Variable 'ssdist1d(++i)' is assigned a value that is never used. [unreadVariable]
[core/scoring/SmoothEnvPairPotential.cc:412]: (style) Variable 'cenlist' can be declared with const [constVariable]
[core/scoring/SmoothEnvPairPotential.cc:414]: (style) Variable 'dcenlist' can be declared with const [constVariable]
[core/scoring/SmoothEnvPairPotential.cc:76]: (performance) Variable 'SIGMOID_SLOPE' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/SmoothEnvPairPotential.cc:77]: (performance) Variable 'cen_dist_cutoff_12_pad' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/SplitUnfoldedTwoBodyPotential.cc:46]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[core/scoring/SplitUnfoldedTwoBodyPotential.cc:51]: (performance) Function parameter 'atom_type_label_name' should be passed by const reference. [passedByValue]
[core/scoring/SplitUnfoldedTwoBodyPotential.cc:51]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[core/scoring/SplitUnfoldedTwoBodyPotential.cc:53]: (performance) Variable 'atom_type_label_set_used_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/SS_Info.cc:244]: (warning) Member variable 'Helices::total_helices' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/SS_Info.cc:254]: (warning) Member variable 'Helices::total_helices' is not assigned a value in 'Helices::operator='. [operatorEqVarError]
[core/scoring/symmetry/SymmetricEnergies.cc:260]: (style) Variable 'pose' can be declared with const [constVariable]
[core/scoring/TenANeighborGraph.hh:128]: (warning) Assert statement calls a function which may have desired side effects: 'get_node'. [assertWithSideEffect]
[core/scoring/TMscore.cc:204]: (style) Variable 'vt' is assigned a value that is never used. [unreadVariable]
[core/scoring/trie/trie_vs_trie.hh:97]: (style) Variable 'energy_stack[1]' is assigned a value that is never used. [unreadVariable]
[core/scoring/vdwaals/VDWTrie.cc:37]: (warning) Member variable 'VDWAtom::is_wat_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/vdwaals/VDWTrie.cc:43]: (warning) Member variable 'VDWAtom::is_wat_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/xml_util.cc:124]: (style) Parameter 'attributes' can be declared with const [constParameter]
[core/scoring/xml_util.cc:153]: (style) Parameter 'attributes' can be declared with const [constParameter]
[core/scoring/xml_util.cc:163]: (style) Parameter 'attributes' can be declared with const [constParameter]
[core/select/jump_selector/util.cc:164]: (style) Parameter 'attlist' can be declared with const [constParameter]
[core/select/jump_selector/util.cc:175]: (style) Parameter 'attlist' can be declared with const [constParameter]
[core/select/movemap/MoveMapFactory.cc:370]: (style) Parameter 'datacache' can be declared with const [constParameter]
[core/select/movemap/util.cc:123]: (style) Parameter 'attlist' can be declared with const [constParameter]
[core/select/movemap/util.cc:96]: (style) Parameter 'attlist' can be declared with const [constParameter]
[core/select/residue_selector/BondedResidueSelector.cc:41]: (warning) Member variable 'BondedResidueSelector::use_input_set_selector_' is not initialized in the constructor. [uninitMemberVar]
[core/select/residue_selector/CachedResidueSubset.cc:53]: (warning) Assert statement calls a function which may have desired side effects: 'data'. [assertWithSideEffect]
[core/select/residue_selector/DensityFitResidueSelector.cc:105]: (performance) Variable 'den_fit_metric_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/select/residue_selector/DensityFitResidueSelector.cc:87]: (performance) Variable 'den_fit_metric_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/select/residue_selector/GlycanLayerSelector.cc:161] -> [core/select/residue_selector/GlycanLayerSelector.cc:164]: (style) Variable 'end_for_layer_' is reassigned a value before the old one has been used. [redundantAssignment]
[core/select/residue_selector/GlycanResidueSelector.cc:58]: (performance) Variable 'root_residue_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/select/residue_selector/GlycanResidueSelector.cc:66]: (performance) Variable 'root_residue_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/select/residue_selector/ResidueInSequenceMotifSelector.hh:56]: (performance) Function parameter 'regex' should be passed by const reference. [passedByValue]
[core/select/residue_selector/ScoreTermValueBasedSelector.cc:44]: (warning) Member variable 'ScoreTermValueBasedSelector::score_type_' is not initialized in the constructor. [uninitMemberVar]
[core/select/residue_selector/SSElementSelector.cc:145]: (performance) Function parameter 'description' should be passed by const reference. [passedByValue]
[core/select/residue_selector/SSElementSelector.cc:235]: (style) Variable 'nTerm_end' is assigned a value that is never used. [unreadVariable]
[core/select/residue_selector/util.cc:235]: (style) Parameter 'attlist' can be declared with const [constParameter]
[core/select/residue_selector/util.cc:246]: (style) Parameter 'attlist' can be declared with const [constParameter]
[core/select/residue_selector/util.cc:440]: (style) Parameter 'attributes' can be declared with const [constParameter]
[core/select/util.cc:159]: (style) Parameter 'dist_cutoff' can be declared with const [constParameter]
[core/sequence/ChemicalShiftSequence.hh:43] -> [core/sequence/ChemicalShiftSequence.hh:69]: (warning) Virtual function 'read_from_file' is called from constructor 'ChemicalShiftSequence(const utility::file::FileName&fn)' at line 43. Dynamic binding is not used. [virtualCallInConstructor]
[core/sequence/DP_Matrix.hh:67]: (warning) Member variable 'Cell::type_' is not assigned a value in 'Cell::operator='. [operatorEqVarError]
[core/sequence/MatrixScoringScheme.cc:104]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[core/sequence/MatrixScoringScheme.hh:54] -> [core/sequence/MatrixScoringScheme.hh:88]: (warning) Virtual function 'read_from_file' is called from constructor 'MatrixScoringScheme(Real open,Real extend,const utility::file::FileName&fn)' at line 54. Dynamic binding is not used. [virtualCallInConstructor]
[core/sequence/ScoringScheme.cc:74]: (performance) Function parameter 'new_type' should be passed by const reference. [passedByValue]
[core/sequence/SequenceAlignment.cc:74]: (performance) Function parameter 'new_scores' should be passed by const reference. [passedByValue]
[core/sequence/Sequence.cc:84]: (performance) Function parameter 'new_id' should be passed by const reference. [passedByValue]
[core/sequence/SequenceProfile.hh:57] -> [core/sequence/SequenceProfile.hh:84]: (warning) Virtual function 'read_from_file' is called from constructor 'SequenceProfile(const utility::file::FileName&fn)' at line 57. Dynamic binding is not used. [virtualCallInConstructor]
[core/sequence/SWAligner.cc:107]: (style) Variable 'current_cell' is assigned a value that is never used. [unreadVariable]
[core/sequence/util.cc:525]: (style) Parameter 'candidate_aln' can be declared with const [constParameter]
[core/sequence/util.cc:526]: (style) Parameter 'true_aln' can be declared with const [constParameter]
[core/sequence/util.cc:556]: (performance) Function parameter 'aln_to_steal' should be passed by const reference. [passedByValue]
[core/sequence/util.cc:782]: (style) Parameter 'pose1' can be declared with const [constParameter]
[core/sequence/util.cc:783]: (style) Parameter 'pose2' can be declared with const [constParameter]
[core/simple_metrics/composite_metrics/CompositeEnergyMetric.cc:95]: (performance) Variable 'residue_selector_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/simple_metrics/composite_metrics/CompositeEnergyMetric.cc:96]: (performance) Variable 'scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/simple_metrics/composite_metrics/CompositeEnergyMetric.cc:97]: (performance) Variable 'ref_pose_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/simple_metrics/CompositeRealMetric.cc:51]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[core/simple_metrics/CompositeRealMetric.cc:51]: (performance) Function parameter 'suffix' should be passed by const reference. [passedByValue]
[core/simple_metrics/CompositeRealMetric.cc:70]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[core/simple_metrics/CompositeRealMetric.cc:70]: (performance) Function parameter 'suffix' should be passed by const reference. [passedByValue]
[core/simple_metrics/CompositeStringMetric.cc:51]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[core/simple_metrics/CompositeStringMetric.cc:51]: (performance) Function parameter 'suffix' should be passed by const reference. [passedByValue]
[core/simple_metrics/CompositeStringMetric.cc:70]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[core/simple_metrics/CompositeStringMetric.cc:70]: (performance) Function parameter 'suffix' should be passed by const reference. [passedByValue]
[core/simple_metrics/metrics/DihedralDistanceMetric.cc:90]: (performance) Variable 'residue_selector_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/simple_metrics/metrics/DihedralDistanceMetric.cc:91]: (performance) Variable 'residue_selector_ref_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/simple_metrics/metrics/DihedralDistanceMetric.cc:92]: (performance) Variable 'ref_pose_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/simple_metrics/metrics/InteractionEnergyMetric.cc:78]: (performance) Variable 'scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/simple_metrics/metrics/ResidueSummaryMetric.cc:117]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[core/simple_metrics/metrics/ResidueSummaryMetric.cc:117]: (performance) Function parameter 'suffix' should be passed by const reference. [passedByValue]
[core/simple_metrics/metrics/RMSDMetric.cc:105]: (performance) Variable 'residue_selector_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/simple_metrics/metrics/RMSDMetric.cc:106]: (performance) Variable 'residue_selector_ref_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/simple_metrics/metrics/RMSDMetric.cc:107]: (performance) Variable 'ref_pose_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/simple_metrics/metrics/SecondaryStructureMetric.cc:70]: (performance) Variable 'selector_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/simple_metrics/metrics/SelectedResiduesMetric.cc:72]: (performance) Variable 'selector_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/simple_metrics/metrics/SelectedResiduesPyMOLMetric.cc:68]: (performance) Variable 'selector_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/simple_metrics/metrics/SequenceMetric.cc:89]: (performance) Variable 'selector_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/simple_metrics/metrics/SequenceSimilarityMetric.cc:70]: (performance) Variable 'selector_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/simple_metrics/metrics/SequenceSimilarityMetric.cc:71]: (performance) Variable 'native_pose_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/simple_metrics/metrics/TimingProfileMetric.cc:57]: (performance) Variable 'construction_time_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/simple_metrics/per_residue_metrics/PerResidueDensityFitMetric.cc:253]: (style) Unused variable: scores [unusedVariable]
[core/simple_metrics/PerResidueRealMetric.cc:102]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[core/simple_metrics/PerResidueRealMetric.cc:103]: (performance) Function parameter 'suffix' should be passed by const reference. [passedByValue]
[core/simple_metrics/PerResidueRealMetric.cc:125]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[core/simple_metrics/PerResidueRealMetric.cc:125]: (performance) Function parameter 'suffix' should be passed by const reference. [passedByValue]
[core/simple_metrics/PerResidueRealMetric.cc:49]: (performance) Variable 'selector_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/simple_metrics/PerResidueStringMetric.cc:110]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[core/simple_metrics/PerResidueStringMetric.cc:110]: (performance) Function parameter 'suffix' should be passed by const reference. [passedByValue]
[core/simple_metrics/PerResidueStringMetric.cc:46]: (performance) Variable 'selector_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/simple_metrics/PerResidueStringMetric.cc:91]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[core/simple_metrics/PerResidueStringMetric.cc:91]: (performance) Function parameter 'suffix' should be passed by const reference. [passedByValue]
[core/simple_metrics/RealMetric.cc:51]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[core/simple_metrics/RealMetric.cc:51]: (performance) Function parameter 'suffix' should be passed by const reference. [passedByValue]
[core/simple_metrics/RealMetric.cc:67]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[core/simple_metrics/RealMetric.cc:67]: (performance) Function parameter 'suffix' should be passed by const reference. [passedByValue]
[core/simple_metrics/StringMetric.cc:51]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[core/simple_metrics/StringMetric.cc:51]: (performance) Function parameter 'suffix' should be passed by const reference. [passedByValue]
[core/simple_metrics/StringMetric.cc:70]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[core/simple_metrics/StringMetric.cc:70]: (performance) Function parameter 'suffix' should be passed by const reference. [passedByValue]
[core/util/cryst_util.cc:183]: (style) Parameter 'scorefxn' can be declared with const [constParameter]
[core/util/cryst_util.cc:68]: (style) Parameter 'pose_orig' can be declared with const [constParameter]
[core/util/cryst_util.cc:68]: (style) Parameter 'scorefxn' can be declared with const [constParameter]
[core/util/metalloproteins_util.cc:291]: (style) Parameter 'liganding_atomids' can be declared with const [constParameter]
[numeric/alignment/QCPKernel.hh:141]: (style) Variable 'oldg' is assigned a value that is never used. [unreadVariable]
[numeric/AxisRotationSampler.hh:46]: (performance) Variable 'theta_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[numeric/Calculator.cc:163]: (style) Parameter 'values' can be declared with const [constParameter]
[numeric/color_util.hh:21] -> [numeric/color_util.cc:19]: (warning) Function 'rgb_to_hsv' argument order different: declaration 'r, b, g' definition 'r, g, b' [funcArgOrderDifferent]
[numeric/DiscreteIntervalEncodingTree.hh:253] -> [numeric/DiscreteIntervalEncodingTree.hh:262]: (style) Local variable 'ranges' shadows outer function [shadowFunction]
[numeric/fourier/FFT.cc:112]: (style) Parameter 'X' can be declared with const [constParameter]
[numeric/fourier/FFT.cc:130]: (style) Parameter 'X' can be declared with const [constParameter]
[numeric/fourier/FFT.cc:49]: (style) Parameter 'X' can be declared with const [constParameter]
[numeric/fourier/FFT.cc:67]: (style) Parameter 'X' can be declared with const [constParameter]
[numeric/fourier/SHT.cc:1026] -> [numeric/fourier/SHT.cc:1034]: (style) Condition 'm!=0' is always true [knownConditionTrueFalse]
[numeric/fourier/SHT.cc:257]: (style) Parameter 'data' can be declared with const [constParameter]
[numeric/fourier/SHT.cc:261]: (style) Parameter 'cos_pml' can be declared with const [constParameter]
[numeric/fourier/SHT.cc:262]: (style) Parameter 'weights' can be declared with const [constParameter]
[numeric/fourier/SHT.cc:315]: (style) Parameter 'coeffs' can be declared with const [constParameter]
[numeric/fourier/SHT.cc:319]: (style) Parameter 'trans_cos_pml' can be declared with const [constParameter]
[numeric/fourier/SHT.cc:320]: (style) Parameter 'sin_values' can be declared with const [constParameter]
[numeric/fourier/SHT.cc:328]: (style) Variable 'coeffs_offset' is assigned a value that is never used. [unreadVariable]
[numeric/fourier/SHT.cc:368]: (style) Parameter 'wignersTrans' can be declared with const [constParameter]
[numeric/fourier/SHT.cc:394]: (style) Parameter 'wignersTrans' can be declared with const [constParameter]
[numeric/fourier/SHT.cc:424]: (style) Parameter 'coeffs' can be declared with const [constParameter]
[numeric/fourier/SHT.cc:426]: (style) Parameter 'wignersTrans' can be declared with const [constParameter]
[numeric/fourier/SHT.cc:469]: (performance) Variable 'p1' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[numeric/fourier/SHT.cc:46]: (style) Parameter 'arrayIn' can be declared with const [constParameter]
[numeric/fourier/SHT.cc:470]: (performance) Variable 'fftPlan' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[numeric/fourier/SHT.cc:470]: (performance) Variable 'ifftPlan' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[numeric/fourier/SHT.cc:471]: (performance) Variable 'dctPlan' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[numeric/fourier/SHT.cc:471]: (performance) Variable 'idctPlan' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[numeric/fourier/SHT.cc:477]: (performance) Variable 'p1' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[numeric/fourier/SHT.cc:478]: (performance) Variable 'fftPlan' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[numeric/fourier/SHT.cc:478]: (performance) Variable 'ifftPlan' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[numeric/fourier/SHT.cc:479]: (performance) Variable 'dctPlan' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[numeric/fourier/SHT.cc:479]: (performance) Variable 'idctPlan' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[numeric/fourier/SHT.cc:570]: (style) Parameter 'sigCoefR' can be declared with const [constParameter]
[numeric/fourier/SHT.cc:571]: (style) Parameter 'sigCoefI' can be declared with const [constParameter]
[numeric/fourier/SHT.cc:601]: (style) Parameter 'sigCoefI' can be declared with const [constParameter]
[numeric/fourier/SHT.cc:654]: (style) Parameter 'sigCoefR' can be declared with const [constParameter]
[numeric/fourier/SHT.cc:655]: (style) Parameter 'sigCoefI' can be declared with const [constParameter]
[numeric/fourier/SHT.cc:656]: (style) Parameter 'tmpCoefR' can be declared with const [constParameter]
[numeric/fourier/SHT.cc:657]: (style) Parameter 'tmpCoefI' can be declared with const [constParameter]
[numeric/fourier/SHT.cc:754]: (style) Parameter 'sigCoefR' can be declared with const [constParameter]
[numeric/fourier/SHT.cc:755]: (style) Parameter 'sigCoefI' can be declared with const [constParameter]
[numeric/fourier/SHT.cc:756]: (style) Parameter 'tmpCoefR' can be declared with const [constParameter]
[numeric/fourier/SHT.cc:757]: (style) Parameter 'tmpCoefI' can be declared with const [constParameter]
[numeric/geometry/hashing/SixDHasher.cc:287]: (style) Parameter 'input' can be declared with const [constParameter]
[numeric/geometry/hashing/xyzStripeHashWithMeta.hh:66]: (warning) Member variable 'xyzStripeHashWithMeta < float >::xmx_' is not initialized in the constructor. [uninitMemberVar]
[numeric/geometry/hashing/xyzStripeHashWithMeta.hh:66]: (warning) Member variable 'xyzStripeHashWithMeta < float >::ymx_' is not initialized in the constructor. [uninitMemberVar]
[numeric/geometry/hashing/xyzStripeHashWithMeta.hh:66]: (warning) Member variable 'xyzStripeHashWithMeta < float >::zmx_' is not initialized in the constructor. [uninitMemberVar]
[numeric/HomogeneousTransform.hh:165] -> [numeric/HomogeneousTransform.hh:93]: (style) Local variable 'xaxis' shadows outer function [shadowFunction]
[numeric/kdtree/nearest_neighbors.cc:105]: (style) Parameter 'bounds' can be declared with const [constParameter]
[numeric/kdtree/nearest_neighbors.cc:199]: (style) Parameter 'bounds' can be declared with const [constParameter]
[numeric/kdtree/nearest_neighbors.cc:36]: (style) Parameter 'tree' can be declared with const [constParameter]
[numeric/kdtree/nearest_neighbors.cc:57]: (style) Parameter 'tree' can be declared with const [constParameter]
[numeric/kdtree/nearest_neighbors.cc:80]: (style) Parameter 'tree' can be declared with const [constParameter]
[numeric/kinematic_closure/bridgeObjects.cc:788]: (style) Variable 'fchain3' is assigned a value that is never used. [unreadVariable]
[numeric/kinematic_closure/closure.cc:834]: (style) Variable 'fchain3' is assigned a value that is never used. [unreadVariable]
[numeric/kinematic_closure/dixon.cc:1003]: (style) Variable 'order[3]' is assigned a value that is never used. [unreadVariable]
[numeric/linear_algebra/minimum_bounding_ellipse.cc:63]: (style) Variable 'Q_col2' is assigned a value that is never used. [unreadVariable]
[numeric/linear_algebra/rgg.cc:362] -> [numeric/linear_algebra/rgg.cc:442]: (style) Redundant initialization for 'ep'. The initialized value is overwritten before it is read. [redundantInitialization]
[numeric/MathMatrix.hh:372]: (error) Reference to temporary returned. [returnTempReference]
[numeric/MathMatrix.hh:395]: (error) Reference to temporary returned. [returnTempReference]
[numeric/MathMatrix.hh:486]: (error) Reference to temporary returned. [returnTempReference]
[numeric/MathMatrix.hh:706]: (error) Reference to temporary returned. [returnTempReference]
[numeric/MathMatrix.hh:725]: (error) Reference to temporary returned. [returnTempReference]
[numeric/MathNTensor.hh:218]: (error) Reference to temporary returned. [returnTempReference]
[numeric/MathNTensor.hh:230]: (performance) Variable 'size_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[numeric/MathNTensor.hh:500]: (error) Reference to temporary returned. [returnTempReference]
[numeric/MathNTensor.hh:520]: (error) Reference to temporary returned. [returnTempReference]
[numeric/MathNTensor.hh:74]: (performance) Variable 'size_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[numeric/MathNTensor.hh:87]: (performance) Variable 'size_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[numeric/model_quality/maxsub.cc:549]: (style) Variable 'C(i3+1)' is assigned a value that is never used. [unreadVariable]
[numeric/model_quality/maxsub.cc:550]: (style) Variable 'C(i3+2)' is assigned a value that is never used. [unreadVariable]
[numeric/model_quality/maxsub.cc:551]: (style) Variable 'C(i3+3)' is assigned a value that is never used. [unreadVariable]
[numeric/model_quality/rms.cc:1223]: (style) Variable 'ev(3)' is assigned a value that is never used. [unreadVariable]
[numeric/model_quality/rms.cc:1320]: (style) Variable 'mvec(3,3)' is assigned a value that is never used. [unreadVariable]
[numeric/model_quality/rms.cc:225]: (style) Parameter 'XX' can be declared with const [constParameter]
[numeric/model_quality/rms.cc:226]: (style) Parameter 'YY' can be declared with const [constParameter]
[numeric/model_quality/rms.cc:270] -> [numeric/model_quality/rms.cc:271]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[numeric/model_quality/rms.cc:623]: (style) Variable 'm_v(3,3)' is assigned a value that is never used. [unreadVariable]
[numeric/MultiDimensionalHistogram.hh:289]: (performance) Function parameter 'label' should be passed by const reference. [passedByValue]
[numeric/MultiDimensionalHistogram.hh:380] -> [numeric/MultiDimensionalHistogram.hh:500]: (style) Local variable 'total_counts' shadows outer function [shadowFunction]
[numeric/random/DistributionSampler.hh:32]: (style) Parameter 'distribution' can be declared with const [constParameter]
[numeric/random/mt19937.hh:482]: (style) Condition 'size>=623' is always true [knownConditionTrueFalse]
[numeric/random/mt19937.hh:494]: (portability) Using memset() on union which contains a floating point number. [memsetClassFloat]
[numeric/random/mt19937.hh:501]: (style) Argument '(size-1)%size' to function sformat_idxof is always 767 [constArgument]
[numeric/random/random.cc:169]: (portability) Casting from double * to unsigned long * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
[numeric/random/random.cc:180]: (portability) Casting between unsigned long * and double * which have an incompatible binary data representation. [invalidPointerCast]
[numeric/statistics/functions.hh:123] -> [numeric/statistics/functions.cc:106]: (style) Local variable 'cov' shadows outer function [shadowFunction]
[numeric/statistics/functions.hh:123] -> [numeric/statistics/functions.cc:78]: (style) Local variable 'cov' shadows outer function [shadowFunction]
[numeric/UniformRotationSampler.hh:205]: (performance) Variable 'theta_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[numeric/UniformRotationSampler.hh:72]: (performance) Variable 'w_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[numeric/UniformRotationSampler.hh:72]: (performance) Variable 'x_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[numeric/UniformRotationSampler.hh:72]: (performance) Variable 'y_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[numeric/UniformRotationSampler.hh:72]: (performance) Variable 'z_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[numeric/UniformRotationSampler.hh:75]: (performance) Variable 'w_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[numeric/UniformRotationSampler.hh:75]: (performance) Variable 'x_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[numeric/UniformRotationSampler.hh:75]: (performance) Variable 'y_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[numeric/UniformRotationSampler.hh:75]: (performance) Variable 'z_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[numeric/util.cc:102]: (error) Reference to temporary returned. [returnTempReference]
[numeric/util.cc:110]: (error) Reference to temporary returned. [returnTempReference]
[numeric/util.cc:118]: (error) Reference to temporary returned. [returnTempReference]
[numeric/util.cc:126]: (error) Reference to temporary returned. [returnTempReference]
[numeric/util.cc:134]: (error) Reference to temporary returned. [returnTempReference]
[numeric/util.cc:161]: (error) Reference to temporary returned. [returnTempReference]
[numeric/util.cc:171]: (error) Reference to temporary returned. [returnTempReference]
[numeric/util.cc:180]: (error) Reference to temporary returned. [returnTempReference]
[numeric/util.cc:188]: (error) Reference to temporary returned. [returnTempReference]
[numeric/util.cc:196]: (error) Reference to temporary returned. [returnTempReference]
[numeric/util.cc:204]: (error) Reference to temporary returned. [returnTempReference]
[numeric/util.cc:212]: (error) Reference to temporary returned. [returnTempReference]
[numeric/util.cc:220]: (error) Reference to temporary returned. [returnTempReference]
[numeric/util.cc:228]: (error) Reference to temporary returned. [returnTempReference]
[numeric/util.cc:67]: (error) Reference to temporary returned. [returnTempReference]
[numeric/util.cc:77]: (error) Reference to temporary returned. [returnTempReference]
[numeric/util.cc:86]: (error) Reference to temporary returned. [returnTempReference]
[numeric/util.cc:94]: (error) Reference to temporary returned. [returnTempReference]
[numeric/VoxelGrid.impl.hh:1002]: (style) Clarify calculation precedence for '&' and '?'. [clarifyCalculation]
[numeric/VoxelGrid.impl.hh:1003]: (style) Clarify calculation precedence for '&' and '?'. [clarifyCalculation]
[numeric/VoxelGrid.impl.hh:1004]: (style) Clarify calculation precedence for '&' and '?'. [clarifyCalculation]
[numeric/VoxelGrid.impl.hh:1018]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/VoxelGrid.impl.hh:1058]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/VoxelGrid.impl.hh:1064]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/VoxelGrid.impl.hh:1075]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/VoxelGrid.impl.hh:1124]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/VoxelGrid.impl.hh:1142]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/VoxelGrid.impl.hh:1183]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/VoxelGrid.impl.hh:1197]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/VoxelGrid.impl.hh:1214]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/VoxelGrid.impl.hh:1263]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/VoxelGrid.impl.hh:1279]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/VoxelGrid.impl.hh:176]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/VoxelGrid.impl.hh:205]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/VoxelGrid.impl.hh:650]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/VoxelGrid.impl.hh:654]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/VoxelGrid.impl.hh:665]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/VoxelGrid.impl.hh:692]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/VoxelGrid.impl.hh:696]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/VoxelGrid.impl.hh:707]: (style) Clarify calculation precedence for '&' and '?'. [clarifyCalculation]
[numeric/VoxelGrid.impl.hh:708]: (style) Clarify calculation precedence for '&' and '?'. [clarifyCalculation]
[numeric/VoxelGrid.impl.hh:709]: (style) Clarify calculation precedence for '&' and '?'. [clarifyCalculation]
[numeric/VoxelGrid.impl.hh:731]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/VoxelGrid.impl.hh:735]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/VoxelGrid.impl.hh:786]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/VoxelGrid.impl.hh:800]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/VoxelGrid.impl.hh:811]: (style) Clarify calculation precedence for '&' and '?'. [clarifyCalculation]
[numeric/VoxelGrid.impl.hh:812]: (style) Clarify calculation precedence for '&' and '?'. [clarifyCalculation]
[numeric/VoxelGrid.impl.hh:813]: (style) Clarify calculation precedence for '&' and '?'. [clarifyCalculation]
[numeric/VoxelGrid.impl.hh:827]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/VoxelGrid.impl.hh:871]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/VoxelGrid.impl.hh:885]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/VoxelGrid.impl.hh:899]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/VoxelGrid.impl.hh:910]: (style) Clarify calculation precedence for '&' and '?'. [clarifyCalculation]
[numeric/VoxelGrid.impl.hh:911]: (style) Clarify calculation precedence for '&' and '?'. [clarifyCalculation]
[numeric/VoxelGrid.impl.hh:912]: (style) Clarify calculation precedence for '&' and '?'. [clarifyCalculation]
[numeric/VoxelGrid.impl.hh:927]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/VoxelGrid.impl.hh:977]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/VoxelGrid.impl.hh:991]: (style) Redundant condition: check_relevance. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[numeric/xyzTransform.hh:90] -> [numeric/xyzTransform.hh:327]: (style) Local variable 'x' shadows outer function [shadowFunction]
[numeric/xyzTransform.hh:91] -> [numeric/xyzTransform.hh:328]: (style) Local variable 'y' shadows outer function [shadowFunction]
[numeric/xyzTransform.hh:92] -> [numeric/xyzTransform.hh:329]: (style) Local variable 'z' shadows outer function [shadowFunction]
[numeric/xyzVector.hh:2071] -> [numeric/geometry/hashing/SixDHasher.cc:168]: (style) Local variable 'center' shadows outer function [shadowFunction]
[ObjexxFCL/Cstring.hh:368] -> [ObjexxFCL/Cstring.hh:213]: (style) Local variable 'len' shadows outer function [shadowFunction]
[ObjexxFCL/Cstring.hh:368] -> [ObjexxFCL/Cstring.hh:226]: (style) Local variable 'len' shadows outer function [shadowFunction]
[ObjexxFCL/Cstring.hh:368] -> [ObjexxFCL/Cstring.hh:238]: (style) Local variable 'len' shadows outer function [shadowFunction]
[ObjexxFCL/Cstring.hh:368] -> [ObjexxFCL/Cstring.hh:95]: (style) Local variable 'len' shadows outer function [shadowFunction]
[ObjexxFCL/FArray1D.hh:145] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < bool >(const DynamicIndexRange&I_a)' at line 145. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:145] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < char >(const DynamicIndexRange&I_a)' at line 145. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:145] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D(const DynamicIndexRange&I_a)' at line 145. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:145] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < core :: PackerEnergy >(const DynamicIndexRange&I_a)' at line 145. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:145] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < core :: Real >(const DynamicIndexRange&I_a)' at line 145. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:145] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < core :: Size >(const DynamicIndexRange&I_a)' at line 145. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:145] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < double >(const DynamicIndexRange&I_a)' at line 145. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:145] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < float >(const DynamicIndexRange&I_a)' at line 145. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:145] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < int >(const DynamicIndexRange&I_a)' at line 145. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:145] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < ObjexxFCL :: FArray1D_int >(const DynamicIndexRange&I_a)' at line 145. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:145] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < PackerEnergy >(const DynamicIndexRange&I_a)' at line 145. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:145] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < platform :: Real >(const DynamicIndexRange&I_a)' at line 145. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:145] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < platform :: Size >(const DynamicIndexRange&I_a)' at line 145. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:145] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < Real >(const DynamicIndexRange&I_a)' at line 145. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:145] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < Size >(const DynamicIndexRange&I_a)' at line 145. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:145] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < std :: complex < double > >(const DynamicIndexRange&I_a)' at line 145. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:145] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < std :: complex < float > >(const DynamicIndexRange&I_a)' at line 145. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:145] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < std :: string >(const DynamicIndexRange&I_a)' at line 145. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:157] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < bool >(const DynamicIndexRange&I_a,const bool&t)' at line 157. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:157] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < char >(const DynamicIndexRange&I_a,const char&t)' at line 157. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:157] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D(const DynamicIndexRange&I_a,const T&t)' at line 157. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:157] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < core :: PackerEnergy >(const DynamicIndexRange&I_a,const core::PackerEnergy&t)' at line 157. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:157] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < core :: Real >(const DynamicIndexRange&I_a,const core::Real&t)' at line 157. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:157] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < core :: Size >(const DynamicIndexRange&I_a,const core::Size&t)' at line 157. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:157] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < double >(const DynamicIndexRange&I_a,const double&t)' at line 157. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:157] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < float >(const DynamicIndexRange&I_a,const float&t)' at line 157. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:157] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < int >(const DynamicIndexRange&I_a,const int&t)' at line 157. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:157] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < ObjexxFCL :: FArray1D_int >(const DynamicIndexRange&I_a,const ObjexxFCL::FArray1D_int&t)' at line 157. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:157] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < PackerEnergy >(const DynamicIndexRange&I_a,const PackerEnergy&t)' at line 157. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:157] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < platform :: Real >(const DynamicIndexRange&I_a,const platform::Real&t)' at line 157. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:157] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < platform :: Size >(const DynamicIndexRange&I_a,const platform::Size&t)' at line 157. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:157] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < Real >(const DynamicIndexRange&I_a,const Real&t)' at line 157. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:157] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < Size >(const DynamicIndexRange&I_a,const Size&t)' at line 157. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:157] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < std :: complex < double > >(const DynamicIndexRange&I_a,const std::complex<double>&t)' at line 157. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:157] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < std :: complex < float > >(const DynamicIndexRange&I_a,const std::complex<float>&t)' at line 157. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:157] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < std :: string >(const DynamicIndexRange&I_a,const std::string&t)' at line 157. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:158] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < bool >(const DynamicIndexRange&I_a,const bool&t)' at line 158. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:158] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < char >(const DynamicIndexRange&I_a,const char&t)' at line 158. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:158] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D(const DynamicIndexRange&I_a,const T&t)' at line 158. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:158] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < core :: PackerEnergy >(const DynamicIndexRange&I_a,const core::PackerEnergy&t)' at line 158. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:158] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < core :: Real >(const DynamicIndexRange&I_a,const core::Real&t)' at line 158. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:158] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < core :: Size >(const DynamicIndexRange&I_a,const core::Size&t)' at line 158. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:158] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < double >(const DynamicIndexRange&I_a,const double&t)' at line 158. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:158] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < float >(const DynamicIndexRange&I_a,const float&t)' at line 158. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:158] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < int >(const DynamicIndexRange&I_a,const int&t)' at line 158. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:158] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < ObjexxFCL :: FArray1D_int >(const DynamicIndexRange&I_a,const ObjexxFCL::FArray1D_int&t)' at line 158. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:158] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < PackerEnergy >(const DynamicIndexRange&I_a,const PackerEnergy&t)' at line 158. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:158] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < platform :: Real >(const DynamicIndexRange&I_a,const platform::Real&t)' at line 158. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:158] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < platform :: Size >(const DynamicIndexRange&I_a,const platform::Size&t)' at line 158. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:158] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < Real >(const DynamicIndexRange&I_a,const Real&t)' at line 158. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:158] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < Size >(const DynamicIndexRange&I_a,const Size&t)' at line 158. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:158] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < std :: complex < double > >(const DynamicIndexRange&I_a,const std::complex<double>&t)' at line 158. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:158] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < std :: complex < float > >(const DynamicIndexRange&I_a,const std::complex<float>&t)' at line 158. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:158] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < std :: string >(const DynamicIndexRange&I_a,const std::string&t)' at line 158. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:170] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < bool >(const DynamicIndexRange&I_a,FArrayInitializer < bool , ObjexxFCL :: FArray1D < bool > >::function_type const&function_a)' at line 170. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:170] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < char >(const DynamicIndexRange&I_a,FArrayInitializer < char , ObjexxFCL :: FArray1D < char > >::function_type const&function_a)' at line 170. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:170] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D(const DynamicIndexRange&I_a,FArrayInitializer<T,ObjexxFCL::FArray1D>::function_type const&function_a)' at line 170. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:170] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < core :: PackerEnergy >(const DynamicIndexRange&I_a,FArrayInitializer < core :: PackerEnergy , ObjexxFCL :: FArray1D < core :: PackerEnergy > >::function_type const&function_a)' at line 170. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:170] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < core :: Real >(const DynamicIndexRange&I_a,FArrayInitializer < core :: Real , ObjexxFCL :: FArray1D < core :: Real > >::function_type const&function_a)' at line 170. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:170] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < core :: Size >(const DynamicIndexRange&I_a,FArrayInitializer < core :: Size , ObjexxFCL :: FArray1D < core :: Size > >::function_type const&function_a)' at line 170. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:170] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < double >(const DynamicIndexRange&I_a,FArrayInitializer < double , ObjexxFCL :: FArray1D < double > >::function_type const&function_a)' at line 170. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:170] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < float >(const DynamicIndexRange&I_a,FArrayInitializer < float , ObjexxFCL :: FArray1D < float > >::function_type const&function_a)' at line 170. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:170] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < int >(const DynamicIndexRange&I_a,FArrayInitializer < int , ObjexxFCL :: FArray1D < int > >::function_type const&function_a)' at line 170. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:170] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < ObjexxFCL :: FArray1D_int >(const DynamicIndexRange&I_a,FArrayInitializer < ObjexxFCL :: FArray1D_int , ObjexxFCL :: FArray1D < ObjexxFCL :: FArray1D_int > >::function_type const&function_a)' at line 170. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:170] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < PackerEnergy >(const DynamicIndexRange&I_a,FArrayInitializer < PackerEnergy , ObjexxFCL :: FArray1D < PackerEnergy > >::function_type const&function_a)' at line 170. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:170] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < platform :: Real >(const DynamicIndexRange&I_a,FArrayInitializer < platform :: Real , ObjexxFCL :: FArray1D < platform :: Real > >::function_type const&function_a)' at line 170. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:170] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < platform :: Size >(const DynamicIndexRange&I_a,FArrayInitializer < platform :: Size , ObjexxFCL :: FArray1D < platform :: Size > >::function_type const&function_a)' at line 170. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:170] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < Real >(const DynamicIndexRange&I_a,FArrayInitializer<Real,ObjexxFCL::FArray1D < Real >>::function_type const&function_a)' at line 170. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:170] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < Real >(const DynamicIndexRange&I_a,FArrayInitializer < Real , ObjexxFCL :: FArray1D < Real > >::function_type const&function_a)' at line 170. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:170] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < Size >(const DynamicIndexRange&I_a,FArrayInitializer<Size,ObjexxFCL::FArray1D < Size >>::function_type const&function_a)' at line 170. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:170] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < Size >(const DynamicIndexRange&I_a,FArrayInitializer < Size , ObjexxFCL :: FArray1D < Size > >::function_type const&function_a)' at line 170. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:170] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < std :: complex < double > >(const DynamicIndexRange&I_a,FArrayInitializer < std :: complex < double > , ObjexxFCL :: FArray1D < std :: complex < double > > >::function_type const&function_a)' at line 170. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:170] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < std :: complex < float > >(const DynamicIndexRange&I_a,FArrayInitializer < std :: complex < float > , ObjexxFCL :: FArray1D < std :: complex < float > > >::function_type const&function_a)' at line 170. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:170] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < std :: string >(const DynamicIndexRange&I_a,FArrayInitializer < std :: string , ObjexxFCL :: FArray1D < std :: string > >::function_type const&function_a)' at line 170. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:171] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < bool >(const DynamicIndexRange&I_a,FArrayInitializer < bool , ObjexxFCL :: FArray1D < bool > >::function_type const&function_a)' at line 171. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:171] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < char >(const DynamicIndexRange&I_a,FArrayInitializer < char , ObjexxFCL :: FArray1D < char > >::function_type const&function_a)' at line 171. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:171] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D(const DynamicIndexRange&I_a,FArrayInitializer<T,ObjexxFCL::FArray1D>::function_type const&function_a)' at line 171. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:171] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < core :: PackerEnergy >(const DynamicIndexRange&I_a,FArrayInitializer < core :: PackerEnergy , ObjexxFCL :: FArray1D < core :: PackerEnergy > >::function_type const&function_a)' at line 171. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:171] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < core :: Real >(const DynamicIndexRange&I_a,FArrayInitializer < core :: Real , ObjexxFCL :: FArray1D < core :: Real > >::function_type const&function_a)' at line 171. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:171] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < core :: Size >(const DynamicIndexRange&I_a,FArrayInitializer < core :: Size , ObjexxFCL :: FArray1D < core :: Size > >::function_type const&function_a)' at line 171. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:171] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < double >(const DynamicIndexRange&I_a,FArrayInitializer < double , ObjexxFCL :: FArray1D < double > >::function_type const&function_a)' at line 171. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:171] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < float >(const DynamicIndexRange&I_a,FArrayInitializer < float , ObjexxFCL :: FArray1D < float > >::function_type const&function_a)' at line 171. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:171] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < int >(const DynamicIndexRange&I_a,FArrayInitializer < int , ObjexxFCL :: FArray1D < int > >::function_type const&function_a)' at line 171. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:171] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < ObjexxFCL :: FArray1D_int >(const DynamicIndexRange&I_a,FArrayInitializer < ObjexxFCL :: FArray1D_int , ObjexxFCL :: FArray1D < ObjexxFCL :: FArray1D_int > >::function_type const&function_a)' at line 171. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:171] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < PackerEnergy >(const DynamicIndexRange&I_a,FArrayInitializer < PackerEnergy , ObjexxFCL :: FArray1D < PackerEnergy > >::function_type const&function_a)' at line 171. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:171] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < platform :: Real >(const DynamicIndexRange&I_a,FArrayInitializer < platform :: Real , ObjexxFCL :: FArray1D < platform :: Real > >::function_type const&function_a)' at line 171. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:171] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < platform :: Size >(const DynamicIndexRange&I_a,FArrayInitializer < platform :: Size , ObjexxFCL :: FArray1D < platform :: Size > >::function_type const&function_a)' at line 171. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:171] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < Real >(const DynamicIndexRange&I_a,FArrayInitializer<Real,ObjexxFCL::FArray1D < Real >>::function_type const&function_a)' at line 171. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:171] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < Real >(const DynamicIndexRange&I_a,FArrayInitializer < Real , ObjexxFCL :: FArray1D < Real > >::function_type const&function_a)' at line 171. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:171] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < Size >(const DynamicIndexRange&I_a,FArrayInitializer<Size,ObjexxFCL::FArray1D < Size >>::function_type const&function_a)' at line 171. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:171] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < Size >(const DynamicIndexRange&I_a,FArrayInitializer < Size , ObjexxFCL :: FArray1D < Size > >::function_type const&function_a)' at line 171. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:171] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < std :: complex < double > >(const DynamicIndexRange&I_a,FArrayInitializer < std :: complex < double > , ObjexxFCL :: FArray1D < std :: complex < double > > >::function_type const&function_a)' at line 171. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:171] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < std :: complex < float > >(const DynamicIndexRange&I_a,FArrayInitializer < std :: complex < float > , ObjexxFCL :: FArray1D < std :: complex < float > > >::function_type const&function_a)' at line 171. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:171] -> [ObjexxFCL/FArray1D.hh:673] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < std :: string >(const DynamicIndexRange&I_a,FArrayInitializer < std :: string , ObjexxFCL :: FArray1D < std :: string > >::function_type const&function_a)' at line 171. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:183] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < bool >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 183. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:183] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < char >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 183. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:183] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < core :: PackerEnergy >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 183. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:183] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < core :: Real >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 183. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:183] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < core :: Size >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 183. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:183] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < double >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 183. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:183] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 183. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:183] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < float >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 183. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:183] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < int >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 183. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:183] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < ObjexxFCL :: FArray1D_int >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 183. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:183] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < PackerEnergy >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 183. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:183] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < platform :: Real >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 183. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:183] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < platform :: Size >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 183. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:183] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < Real >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 183. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:183] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < Size >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 183. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:183] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < std :: complex < double > >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 183. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:183] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < std :: complex < float > >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 183. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:183] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < std :: string >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 183. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:184] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < bool >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 184. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:184] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < char >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 184. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:184] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < core :: PackerEnergy >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 184. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:184] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < core :: Real >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 184. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:184] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < core :: Size >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 184. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:184] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < double >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 184. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:184] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 184. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:184] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < float >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 184. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:184] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < int >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 184. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:184] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < ObjexxFCL :: FArray1D_int >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 184. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:184] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < PackerEnergy >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 184. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:184] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < platform :: Real >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 184. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:184] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < platform :: Size >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 184. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:184] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < Real >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 184. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:184] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < Size >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 184. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:184] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < std :: complex < double > >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 184. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:184] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < std :: complex < float > >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 184. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:184] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < std :: string >(FArray1<U>const&a,const DynamicIndexRange&I_a)' at line 184. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:203] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < bool >(FArray1<U>const&a,const DynamicIndexRange&I_a,const bool&t)' at line 203. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:203] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < char >(FArray1<U>const&a,const DynamicIndexRange&I_a,const char&t)' at line 203. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:203] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < core :: PackerEnergy >(FArray1<U>const&a,const DynamicIndexRange&I_a,const core::PackerEnergy&t)' at line 203. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:203] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < core :: Real >(FArray1<U>const&a,const DynamicIndexRange&I_a,const core::Real&t)' at line 203. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:203] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < core :: Size >(FArray1<U>const&a,const DynamicIndexRange&I_a,const core::Size&t)' at line 203. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:203] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < double >(FArray1<U>const&a,const DynamicIndexRange&I_a,const double&t)' at line 203. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:203] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D(FArray1<U>const&a,const DynamicIndexRange&I_a,const T&t)' at line 203. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:203] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < float >(FArray1<U>const&a,const DynamicIndexRange&I_a,const float&t)' at line 203. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:203] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < int >(FArray1<U>const&a,const DynamicIndexRange&I_a,const int&t)' at line 203. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:203] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < ObjexxFCL :: FArray1D_int >(FArray1<U>const&a,const DynamicIndexRange&I_a,const ObjexxFCL::FArray1D_int&t)' at line 203. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:203] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < PackerEnergy >(FArray1<U>const&a,const DynamicIndexRange&I_a,const PackerEnergy&t)' at line 203. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:203] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < platform :: Real >(FArray1<U>const&a,const DynamicIndexRange&I_a,const platform::Real&t)' at line 203. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:203] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < platform :: Size >(FArray1<U>const&a,const DynamicIndexRange&I_a,const platform::Size&t)' at line 203. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:203] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < Real >(FArray1<U>const&a,const DynamicIndexRange&I_a,const Real&t)' at line 203. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:203] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < Size >(FArray1<U>const&a,const DynamicIndexRange&I_a,const Size&t)' at line 203. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:203] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < std :: complex < double > >(FArray1<U>const&a,const DynamicIndexRange&I_a,const std::complex<double>&t)' at line 203. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:203] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < std :: complex < float > >(FArray1<U>const&a,const DynamicIndexRange&I_a,const std::complex<float>&t)' at line 203. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:203] -> [ObjexxFCL/FArray1D.hh:889] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < std :: string >(FArray1<U>const&a,const DynamicIndexRange&I_a,const std::string&t)' at line 203. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:204] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < bool >(FArray1<U>const&a,const DynamicIndexRange&I_a,const bool&t)' at line 204. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:204] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < char >(FArray1<U>const&a,const DynamicIndexRange&I_a,const char&t)' at line 204. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:204] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < core :: PackerEnergy >(FArray1<U>const&a,const DynamicIndexRange&I_a,const core::PackerEnergy&t)' at line 204. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:204] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < core :: Real >(FArray1<U>const&a,const DynamicIndexRange&I_a,const core::Real&t)' at line 204. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:204] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < core :: Size >(FArray1<U>const&a,const DynamicIndexRange&I_a,const core::Size&t)' at line 204. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:204] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < double >(FArray1<U>const&a,const DynamicIndexRange&I_a,const double&t)' at line 204. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:204] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D(FArray1<U>const&a,const DynamicIndexRange&I_a,const T&t)' at line 204. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:204] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < float >(FArray1<U>const&a,const DynamicIndexRange&I_a,const float&t)' at line 204. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:204] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < int >(FArray1<U>const&a,const DynamicIndexRange&I_a,const int&t)' at line 204. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:204] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < ObjexxFCL :: FArray1D_int >(FArray1<U>const&a,const DynamicIndexRange&I_a,const ObjexxFCL::FArray1D_int&t)' at line 204. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:204] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < PackerEnergy >(FArray1<U>const&a,const DynamicIndexRange&I_a,const PackerEnergy&t)' at line 204. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:204] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < platform :: Real >(FArray1<U>const&a,const DynamicIndexRange&I_a,const platform::Real&t)' at line 204. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:204] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < platform :: Size >(FArray1<U>const&a,const DynamicIndexRange&I_a,const platform::Size&t)' at line 204. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:204] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < Real >(FArray1<U>const&a,const DynamicIndexRange&I_a,const Real&t)' at line 204. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:204] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < Size >(FArray1<U>const&a,const DynamicIndexRange&I_a,const Size&t)' at line 204. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:204] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < std :: complex < double > >(FArray1<U>const&a,const DynamicIndexRange&I_a,const std::complex<double>&t)' at line 204. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:204] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < std :: complex < float > >(FArray1<U>const&a,const DynamicIndexRange&I_a,const std::complex<float>&t)' at line 204. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1D.hh:204] -> [ObjexxFCL/FArray1D.hh:405]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1D < std :: string >(FArray1<U>const&a,const DynamicIndexRange&I_a,const std::string&t)' at line 204. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:254] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < bool >(const ObjexxFCL::FArray1P < bool >&a,const DynamicIndexRange&I_a)' at line 254. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:254] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P(const FArray1P&a,const DynamicIndexRange&I_a)' at line 254. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:254] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: PackerEnergy >(const ObjexxFCL::FArray1P < core :: PackerEnergy >&a,const DynamicIndexRange&I_a)' at line 254. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:254] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: Real >(const ObjexxFCL::FArray1P < core :: Real >&a,const DynamicIndexRange&I_a)' at line 254. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:254] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: Size >(const ObjexxFCL::FArray1P < core :: Size >&a,const DynamicIndexRange&I_a)' at line 254. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:254] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < double >(const ObjexxFCL::FArray1P < double >&a,const DynamicIndexRange&I_a)' at line 254. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:254] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < float >(const ObjexxFCL::FArray1P < float >&a,const DynamicIndexRange&I_a)' at line 254. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:254] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < int >(const ObjexxFCL::FArray1P < int >&a,const DynamicIndexRange&I_a)' at line 254. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:254] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < ObjexxFCL :: FArray1D_int >(const ObjexxFCL::FArray1P < ObjexxFCL :: FArray1D_int >&a,const DynamicIndexRange&I_a)' at line 254. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:254] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < platform :: Real >(const ObjexxFCL::FArray1P < platform :: Real >&a,const DynamicIndexRange&I_a)' at line 254. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:254] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < platform :: Size >(const ObjexxFCL::FArray1P < platform :: Size >&a,const DynamicIndexRange&I_a)' at line 254. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:254] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < Real >(const ObjexxFCL::FArray1P < Real >&a,const DynamicIndexRange&I_a)' at line 254. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:254] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < Size >(const ObjexxFCL::FArray1P < Size >&a,const DynamicIndexRange&I_a)' at line 254. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:254] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < std :: complex < double > >(const ObjexxFCL::FArray1P < std :: complex < double > >&a,const DynamicIndexRange&I_a)' at line 254. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:266] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < bool >(ObjexxFCL::FArray1P < bool >&a,const DynamicIndexRange&I_a)' at line 266. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:266] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: PackerEnergy >(ObjexxFCL::FArray1P < core :: PackerEnergy >&a,const DynamicIndexRange&I_a)' at line 266. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:266] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: Real >(ObjexxFCL::FArray1P < core :: Real >&a,const DynamicIndexRange&I_a)' at line 266. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:266] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: Size >(ObjexxFCL::FArray1P < core :: Size >&a,const DynamicIndexRange&I_a)' at line 266. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:266] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < double >(ObjexxFCL::FArray1P < double >&a,const DynamicIndexRange&I_a)' at line 266. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:266] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P(FArray1P&a,const DynamicIndexRange&I_a)' at line 266. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:266] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < float >(ObjexxFCL::FArray1P < float >&a,const DynamicIndexRange&I_a)' at line 266. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:266] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < int >(ObjexxFCL::FArray1P < int >&a,const DynamicIndexRange&I_a)' at line 266. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:266] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < ObjexxFCL :: FArray1D_int >(ObjexxFCL::FArray1P < ObjexxFCL :: FArray1D_int >&a,const DynamicIndexRange&I_a)' at line 266. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:266] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < platform :: Real >(ObjexxFCL::FArray1P < platform :: Real >&a,const DynamicIndexRange&I_a)' at line 266. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:266] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < platform :: Size >(ObjexxFCL::FArray1P < platform :: Size >&a,const DynamicIndexRange&I_a)' at line 266. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:266] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < Real >(ObjexxFCL::FArray1P < Real >&a,const DynamicIndexRange&I_a)' at line 266. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:266] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < Size >(ObjexxFCL::FArray1P < Size >&a,const DynamicIndexRange&I_a)' at line 266. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:266] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < std :: complex < double > >(ObjexxFCL::FArray1P < std :: complex < double > >&a,const DynamicIndexRange&I_a)' at line 266. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:278] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < bool >(FArray1 < bool >::real_FArray const&a,const DynamicIndexRange&I_a)' at line 278. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:278] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: PackerEnergy >(FArray1 < core :: PackerEnergy >::real_FArray const&a,const DynamicIndexRange&I_a)' at line 278. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:278] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: Real >(FArray1 < core :: Real >::real_FArray const&a,const DynamicIndexRange&I_a)' at line 278. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:278] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: Size >(FArray1 < core :: Size >::real_FArray const&a,const DynamicIndexRange&I_a)' at line 278. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:278] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < double >(FArray1 < double >::real_FArray const&a,const DynamicIndexRange&I_a)' at line 278. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:278] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P(FArray1<T>::real_FArray const&a,const DynamicIndexRange&I_a)' at line 278. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:278] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < float >(FArray1 < float >::real_FArray const&a,const DynamicIndexRange&I_a)' at line 278. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:278] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < int >(FArray1 < int >::real_FArray const&a,const DynamicIndexRange&I_a)' at line 278. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:278] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < ObjexxFCL :: FArray1D_int >(FArray1 < ObjexxFCL :: FArray1D_int >::real_FArray const&a,const DynamicIndexRange&I_a)' at line 278. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:278] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < platform :: Real >(FArray1 < platform :: Real >::real_FArray const&a,const DynamicIndexRange&I_a)' at line 278. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:278] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < platform :: Size >(FArray1 < platform :: Size >::real_FArray const&a,const DynamicIndexRange&I_a)' at line 278. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:278] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < Real >(FArray1 < Real >::real_FArray const&a,const DynamicIndexRange&I_a)' at line 278. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:278] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < Size >(FArray1 < Size >::real_FArray const&a,const DynamicIndexRange&I_a)' at line 278. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:278] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < std :: complex < double > >(FArray1 < std :: complex < double > >::real_FArray const&a,const DynamicIndexRange&I_a)' at line 278. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:290] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < bool >(FArray1 < bool >::real_FArray&a,const DynamicIndexRange&I_a)' at line 290. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:290] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: PackerEnergy >(FArray1 < core :: PackerEnergy >::real_FArray&a,const DynamicIndexRange&I_a)' at line 290. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:290] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: Real >(FArray1 < core :: Real >::real_FArray&a,const DynamicIndexRange&I_a)' at line 290. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:290] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: Size >(FArray1 < core :: Size >::real_FArray&a,const DynamicIndexRange&I_a)' at line 290. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:290] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < double >(FArray1 < double >::real_FArray&a,const DynamicIndexRange&I_a)' at line 290. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:290] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P(FArray1<T>::real_FArray&a,const DynamicIndexRange&I_a)' at line 290. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:290] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < float >(FArray1 < float >::real_FArray&a,const DynamicIndexRange&I_a)' at line 290. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:290] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < int >(FArray1 < int >::real_FArray&a,const DynamicIndexRange&I_a)' at line 290. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:290] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < ObjexxFCL :: FArray1D_int >(FArray1 < ObjexxFCL :: FArray1D_int >::real_FArray&a,const DynamicIndexRange&I_a)' at line 290. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:290] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < platform :: Real >(FArray1 < platform :: Real >::real_FArray&a,const DynamicIndexRange&I_a)' at line 290. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:290] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < platform :: Size >(FArray1 < platform :: Size >::real_FArray&a,const DynamicIndexRange&I_a)' at line 290. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:290] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < Real >(FArray1 < Real >::real_FArray&a,const DynamicIndexRange&I_a)' at line 290. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:290] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < Size >(FArray1 < Size >::real_FArray&a,const DynamicIndexRange&I_a)' at line 290. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:290] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < std :: complex < double > >(FArray1 < std :: complex < double > >::real_FArray&a,const DynamicIndexRange&I_a)' at line 290. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:302] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < bool >(FArray1 < bool > const&a,const DynamicIndexRange&I_a)' at line 302. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:302] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: PackerEnergy >(FArray1 < core :: PackerEnergy > const&a,const DynamicIndexRange&I_a)' at line 302. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:302] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: Real >(FArray1 < core :: Real > const&a,const DynamicIndexRange&I_a)' at line 302. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:302] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: Size >(FArray1 < core :: Size > const&a,const DynamicIndexRange&I_a)' at line 302. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:302] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < double >(FArray1 < double > const&a,const DynamicIndexRange&I_a)' at line 302. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:302] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P(FArray1<T>const&a,const DynamicIndexRange&I_a)' at line 302. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:302] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < float >(FArray1 < float > const&a,const DynamicIndexRange&I_a)' at line 302. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:302] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < int >(FArray1 < int > const&a,const DynamicIndexRange&I_a)' at line 302. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:302] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < ObjexxFCL :: FArray1D_int >(FArray1 < ObjexxFCL :: FArray1D_int > const&a,const DynamicIndexRange&I_a)' at line 302. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:302] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < platform :: Real >(FArray1 < platform :: Real > const&a,const DynamicIndexRange&I_a)' at line 302. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:302] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < platform :: Size >(FArray1 < platform :: Size > const&a,const DynamicIndexRange&I_a)' at line 302. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:302] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < Real >(FArray1 < Real > const&a,const DynamicIndexRange&I_a)' at line 302. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:302] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < Size >(FArray1 < Size > const&a,const DynamicIndexRange&I_a)' at line 302. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:302] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < std :: complex < double > >(FArray1 < std :: complex < double > > const&a,const DynamicIndexRange&I_a)' at line 302. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:314] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < bool >(FArray1 < bool >&a,const DynamicIndexRange&I_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:314] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: PackerEnergy >(FArray1 < core :: PackerEnergy >&a,const DynamicIndexRange&I_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:314] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: Real >(FArray1 < core :: Real >&a,const DynamicIndexRange&I_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:314] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: Size >(FArray1 < core :: Size >&a,const DynamicIndexRange&I_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:314] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < double >(FArray1 < double >&a,const DynamicIndexRange&I_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:314] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P(FArray1<T>&a,const DynamicIndexRange&I_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:314] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < float >(FArray1 < float >&a,const DynamicIndexRange&I_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:314] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < int >(FArray1 < int >&a,const DynamicIndexRange&I_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:314] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < ObjexxFCL :: FArray1D_int >(FArray1 < ObjexxFCL :: FArray1D_int >&a,const DynamicIndexRange&I_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:314] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < platform :: Real >(FArray1 < platform :: Real >&a,const DynamicIndexRange&I_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:314] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < platform :: Size >(FArray1 < platform :: Size >&a,const DynamicIndexRange&I_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:314] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < Real >(FArray1 < Real >&a,const DynamicIndexRange&I_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:314] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < Size >(FArray1 < Size >&a,const DynamicIndexRange&I_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:314] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < std :: complex < double > >(FArray1 < std :: complex < double > >&a,const DynamicIndexRange&I_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:326] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < bool >(FArray1 < bool >::Base const&a,const DynamicIndexRange&I_a)' at line 326. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:326] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: PackerEnergy >(FArray1 < core :: PackerEnergy >::Base const&a,const DynamicIndexRange&I_a)' at line 326. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:326] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: Real >(FArray1 < core :: Real >::Base const&a,const DynamicIndexRange&I_a)' at line 326. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:326] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: Size >(FArray1 < core :: Size >::Base const&a,const DynamicIndexRange&I_a)' at line 326. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:326] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < double >(FArray1 < double >::Base const&a,const DynamicIndexRange&I_a)' at line 326. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:326] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P(FArray1<T>::Base const&a,const DynamicIndexRange&I_a)' at line 326. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:326] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < float >(FArray1 < float >::Base const&a,const DynamicIndexRange&I_a)' at line 326. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:326] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < int >(FArray1 < int >::Base const&a,const DynamicIndexRange&I_a)' at line 326. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:326] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < ObjexxFCL :: FArray1D_int >(FArray1 < ObjexxFCL :: FArray1D_int >::Base const&a,const DynamicIndexRange&I_a)' at line 326. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:326] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < platform :: Real >(FArray1 < platform :: Real >::Base const&a,const DynamicIndexRange&I_a)' at line 326. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:326] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < platform :: Size >(FArray1 < platform :: Size >::Base const&a,const DynamicIndexRange&I_a)' at line 326. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:326] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < Real >(FArray1 < Real >::Base const&a,const DynamicIndexRange&I_a)' at line 326. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:326] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < Size >(FArray1 < Size >::Base const&a,const DynamicIndexRange&I_a)' at line 326. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:326] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < std :: complex < double > >(FArray1 < std :: complex < double > >::Base const&a,const DynamicIndexRange&I_a)' at line 326. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:338] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < bool >(FArray1 < bool >::Base&a,const DynamicIndexRange&I_a)' at line 338. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:338] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: PackerEnergy >(FArray1 < core :: PackerEnergy >::Base&a,const DynamicIndexRange&I_a)' at line 338. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:338] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: Real >(FArray1 < core :: Real >::Base&a,const DynamicIndexRange&I_a)' at line 338. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:338] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: Size >(FArray1 < core :: Size >::Base&a,const DynamicIndexRange&I_a)' at line 338. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:338] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < double >(FArray1 < double >::Base&a,const DynamicIndexRange&I_a)' at line 338. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:338] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P(FArray1<T>::Base&a,const DynamicIndexRange&I_a)' at line 338. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:338] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < float >(FArray1 < float >::Base&a,const DynamicIndexRange&I_a)' at line 338. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:338] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < int >(FArray1 < int >::Base&a,const DynamicIndexRange&I_a)' at line 338. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:338] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < ObjexxFCL :: FArray1D_int >(FArray1 < ObjexxFCL :: FArray1D_int >::Base&a,const DynamicIndexRange&I_a)' at line 338. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:338] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < platform :: Real >(FArray1 < platform :: Real >::Base&a,const DynamicIndexRange&I_a)' at line 338. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:338] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < platform :: Size >(FArray1 < platform :: Size >::Base&a,const DynamicIndexRange&I_a)' at line 338. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:338] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < Real >(FArray1 < Real >::Base&a,const DynamicIndexRange&I_a)' at line 338. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:338] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < Size >(FArray1 < Size >::Base&a,const DynamicIndexRange&I_a)' at line 338. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:338] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < std :: complex < double > >(FArray1 < std :: complex < double > >::Base&a,const DynamicIndexRange&I_a)' at line 338. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:350] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < bool >(FArray1 < bool >::Base::Section const&s,const DynamicIndexRange&I_a)' at line 350. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:350] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: PackerEnergy >(FArray1 < core :: PackerEnergy >::Base::Section const&s,const DynamicIndexRange&I_a)' at line 350. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:350] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: Real >(FArray1 < core :: Real >::Base::Section const&s,const DynamicIndexRange&I_a)' at line 350. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:350] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: Size >(FArray1 < core :: Size >::Base::Section const&s,const DynamicIndexRange&I_a)' at line 350. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:350] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < double >(FArray1 < double >::Base::Section const&s,const DynamicIndexRange&I_a)' at line 350. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:350] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P(FArray1<T>::Base::Section const&s,const DynamicIndexRange&I_a)' at line 350. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:350] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < float >(FArray1 < float >::Base::Section const&s,const DynamicIndexRange&I_a)' at line 350. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:350] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < int >(FArray1 < int >::Base::Section const&s,const DynamicIndexRange&I_a)' at line 350. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:350] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < ObjexxFCL :: FArray1D_int >(FArray1 < ObjexxFCL :: FArray1D_int >::Base::Section const&s,const DynamicIndexRange&I_a)' at line 350. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:350] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < platform :: Real >(FArray1 < platform :: Real >::Base::Section const&s,const DynamicIndexRange&I_a)' at line 350. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:350] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < platform :: Size >(FArray1 < platform :: Size >::Base::Section const&s,const DynamicIndexRange&I_a)' at line 350. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:350] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < Real >(FArray1 < Real >::Base::Section const&s,const DynamicIndexRange&I_a)' at line 350. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:350] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < Size >(FArray1 < Size >::Base::Section const&s,const DynamicIndexRange&I_a)' at line 350. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:350] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < std :: complex < double > >(FArray1 < std :: complex < double > >::Base::Section const&s,const DynamicIndexRange&I_a)' at line 350. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:362] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < bool >(FArray1 < bool >::Base::Section&s,const DynamicIndexRange&I_a)' at line 362. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:362] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: PackerEnergy >(FArray1 < core :: PackerEnergy >::Base::Section&s,const DynamicIndexRange&I_a)' at line 362. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:362] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: Real >(FArray1 < core :: Real >::Base::Section&s,const DynamicIndexRange&I_a)' at line 362. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:362] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: Size >(FArray1 < core :: Size >::Base::Section&s,const DynamicIndexRange&I_a)' at line 362. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:362] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < double >(FArray1 < double >::Base::Section&s,const DynamicIndexRange&I_a)' at line 362. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:362] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P(FArray1<T>::Base::Section&s,const DynamicIndexRange&I_a)' at line 362. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:362] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < float >(FArray1 < float >::Base::Section&s,const DynamicIndexRange&I_a)' at line 362. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:362] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < int >(FArray1 < int >::Base::Section&s,const DynamicIndexRange&I_a)' at line 362. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:362] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < ObjexxFCL :: FArray1D_int >(FArray1 < ObjexxFCL :: FArray1D_int >::Base::Section&s,const DynamicIndexRange&I_a)' at line 362. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:362] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < platform :: Real >(FArray1 < platform :: Real >::Base::Section&s,const DynamicIndexRange&I_a)' at line 362. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:362] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < platform :: Size >(FArray1 < platform :: Size >::Base::Section&s,const DynamicIndexRange&I_a)' at line 362. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:362] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < Real >(FArray1 < Real >::Base::Section&s,const DynamicIndexRange&I_a)' at line 362. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:362] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < Size >(FArray1 < Size >::Base::Section&s,const DynamicIndexRange&I_a)' at line 362. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:362] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < std :: complex < double > >(FArray1 < std :: complex < double > >::Base::Section&s,const DynamicIndexRange&I_a)' at line 362. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:374] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < bool >(const bool&t,const DynamicIndexRange&I_a)' at line 374. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:374] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P(const T&t,const DynamicIndexRange&I_a)' at line 374. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:374] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: PackerEnergy >(const core::PackerEnergy&t,const DynamicIndexRange&I_a)' at line 374. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:374] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: Real >(const core::Real&t,const DynamicIndexRange&I_a)' at line 374. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:374] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: Size >(const core::Size&t,const DynamicIndexRange&I_a)' at line 374. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:374] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < double >(const double&t,const DynamicIndexRange&I_a)' at line 374. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:374] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < float >(const float&t,const DynamicIndexRange&I_a)' at line 374. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:374] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < int >(const int&t,const DynamicIndexRange&I_a)' at line 374. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:374] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < ObjexxFCL :: FArray1D_int >(const ObjexxFCL::FArray1D_int&t,const DynamicIndexRange&I_a)' at line 374. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:374] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < platform :: Real >(const platform::Real&t,const DynamicIndexRange&I_a)' at line 374. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:374] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < platform :: Size >(const platform::Size&t,const DynamicIndexRange&I_a)' at line 374. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:374] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < Real >(const Real&t,const DynamicIndexRange&I_a)' at line 374. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:374] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < Size >(const Size&t,const DynamicIndexRange&I_a)' at line 374. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:374] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < std :: complex < double > >(const std::complex<double>&t,const DynamicIndexRange&I_a)' at line 374. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:386] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < bool >(bool&t,const DynamicIndexRange&I_a)' at line 386. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:386] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: PackerEnergy >(core::PackerEnergy&t,const DynamicIndexRange&I_a)' at line 386. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:386] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: Real >(core::Real&t,const DynamicIndexRange&I_a)' at line 386. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:386] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < core :: Size >(core::Size&t,const DynamicIndexRange&I_a)' at line 386. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:386] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < double >(double&t,const DynamicIndexRange&I_a)' at line 386. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:386] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < float >(float&t,const DynamicIndexRange&I_a)' at line 386. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:386] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < int >(int&t,const DynamicIndexRange&I_a)' at line 386. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:386] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < ObjexxFCL :: FArray1D_int >(ObjexxFCL::FArray1D_int&t,const DynamicIndexRange&I_a)' at line 386. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:386] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < platform :: Real >(platform::Real&t,const DynamicIndexRange&I_a)' at line 386. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:386] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < platform :: Size >(platform::Size&t,const DynamicIndexRange&I_a)' at line 386. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:386] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < Real >(Real&t,const DynamicIndexRange&I_a)' at line 386. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:386] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < Size >(Size&t,const DynamicIndexRange&I_a)' at line 386. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:386] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P < std :: complex < double > >(std::complex<double>&t,const DynamicIndexRange&I_a)' at line 386. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray1P.hh:386] -> [ObjexxFCL/FArray1P.hh:956] -> [ObjexxFCL/FArray1P.hh:573]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray1P(T&t,const DynamicIndexRange&I_a)' at line 386. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray2D.hh:157]: (style) Parameter 't' can be declared with const [constParameter]
[ObjexxFCL/FArray2D.hh:570]: (style) Parameter 't' can be declared with const [constParameter]
[ObjexxFCL/FArray2D.hh:689]: (style) Parameter 't' can be declared with const [constParameter]
[ObjexxFCL/FArray2D.hh:818]: (style) Parameter 't' can be declared with const [constParameter]
[ObjexxFCL/FArray2D.hh:830]: (style) Parameter 't' can be declared with const [constParameter]
[ObjexxFCL/FArray2D.hh:842]: (style) Parameter 't' can be declared with const [constParameter]
[ObjexxFCL/FArray2D.hh:854]: (style) Parameter 't' can be declared with const [constParameter]
[ObjexxFCL/FArray2D.hh:867]: (style) Parameter 't' can be declared with const [constParameter]
[ObjexxFCL/FArray2D.hh:879]: (style) Parameter 't' can be declared with const [constParameter]
[ObjexxFCL/FArray2D.hh:891]: (style) Parameter 't' can be declared with const [constParameter]
[ObjexxFCL/FArray2.hh:283]: (style) Variable 'A' can be declared with const [constVariable]
[ObjexxFCL/FArray2.hh:289]: (error) Null pointer dereference [nullPointer]
[ObjexxFCL/FArray2.hh:289]: (style) Argument 'ObjexxFCL::FArray2D < core :: PackerEnergy >*(0)' to function sum is always 0 [constArgument]
[ObjexxFCL/FArray2.hh:437]: (error) Null pointer dereference [nullPointer]
[ObjexxFCL/FArray2.hh:437]: (style) The scope of the variable 'ZERO' can be reduced. [variableScope]
[ObjexxFCL/FArray2.hh:438]: (style) The scope of the variable 'ONE' can be reduced. [variableScope]
[ObjexxFCL/FArray2.hh:565]: (style) Variable 'A' can be declared with const [constVariable]
[ObjexxFCL/FArray2.hh:566]: (error) Null pointer dereference [nullPointer]
[ObjexxFCL/FArray2.hh:578]: (style) Parameter 'd' can be declared with const [constParameter]
[ObjexxFCL/FArray2.hh:582]: (style) Variable 'A' can be declared with const [constVariable]
[ObjexxFCL/FArray2.hh:583]: (error) Null pointer dereference [nullPointer]
[ObjexxFCL/FArray2.hh:594]: (style) Parameter 'd' can be declared with const [constParameter]
[ObjexxFCL/FArray2.hh:598]: (style) Variable 'A' can be declared with const [constVariable]
[ObjexxFCL/FArray2.hh:613]: (style) Variable 'A' can be declared with const [constVariable]
[ObjexxFCL/FArray2.hh:650]: (style) Variable 'A' can be declared with const [constVariable]
[ObjexxFCL/FArray2.hh:656]: (error) Null pointer dereference [nullPointer]
[ObjexxFCL/FArray2.hh:656]: (style) Argument 'ObjexxFCL::FArray2D < core :: PackerEnergy >*(0)' to function sum is always 0 [constArgument]
[ObjexxFCL/FArray3.hh:416] -> [ObjexxFCL/KeyFArray3D.hh:478]: (style) The function 'l1' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray3.hh:422] -> [ObjexxFCL/KeyFArray3D.hh:487]: (style) The function 'u1' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray3.hh:443] -> [ObjexxFCL/KeyFArray3D.hh:505]: (style) The function 'l2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray3.hh:449] -> [ObjexxFCL/KeyFArray3D.hh:514]: (style) The function 'u2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray3.hh:470] -> [ObjexxFCL/KeyFArray3D.hh:532]: (style) The function 'l3' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray3.hh:476] -> [ObjexxFCL/KeyFArray3D.hh:541]: (style) The function 'u3' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray3P.hh:300] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < FIVE > >(const ObjexxFCL::FArray3P < BBDepScoreInterpData < FIVE > >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 300. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:300] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < FOUR > >(const ObjexxFCL::FArray3P < BBDepScoreInterpData < FOUR > >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 300. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:300] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < ONE > >(const ObjexxFCL::FArray3P < BBDepScoreInterpData < ONE > >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 300. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:300] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < THREE > >(const ObjexxFCL::FArray3P < BBDepScoreInterpData < THREE > >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 300. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:300] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < TWO > >(const ObjexxFCL::FArray3P < BBDepScoreInterpData < TWO > >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 300. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:300] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P(const FArray3P&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 300. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:300] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < core :: Real >(const ObjexxFCL::FArray3P < core :: Real >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 300. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:300] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < double >(const ObjexxFCL::FArray3P < double >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 300. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:300] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < float >(const ObjexxFCL::FArray3P < float >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 300. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:300] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < HBEvalType >(const ObjexxFCL::FArray3P < HBEvalType >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 300. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:300] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < platform :: Size >(const ObjexxFCL::FArray3P < platform :: Size >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 300. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:300] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < Real >(const ObjexxFCL::FArray3P < Real >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 300. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:300] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < Size >(const ObjexxFCL::FArray3P < Size >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 300. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:300] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < std :: complex < core :: Real > >(const ObjexxFCL::FArray3P < std :: complex < core :: Real > >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 300. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:300] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < std :: complex < double > >(const ObjexxFCL::FArray3P < std :: complex < double > >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 300. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:314] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < FIVE > >(ObjexxFCL::FArray3P < BBDepScoreInterpData < FIVE > >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:314] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < FOUR > >(ObjexxFCL::FArray3P < BBDepScoreInterpData < FOUR > >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:314] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < ONE > >(ObjexxFCL::FArray3P < BBDepScoreInterpData < ONE > >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:314] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < THREE > >(ObjexxFCL::FArray3P < BBDepScoreInterpData < THREE > >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:314] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < TWO > >(ObjexxFCL::FArray3P < BBDepScoreInterpData < TWO > >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:314] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < core :: Real >(ObjexxFCL::FArray3P < core :: Real >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:314] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < double >(ObjexxFCL::FArray3P < double >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:314] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P(FArray3P&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:314] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < float >(ObjexxFCL::FArray3P < float >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:314] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < HBEvalType >(ObjexxFCL::FArray3P < HBEvalType >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:314] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < platform :: Size >(ObjexxFCL::FArray3P < platform :: Size >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:314] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < Real >(ObjexxFCL::FArray3P < Real >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:314] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < Size >(ObjexxFCL::FArray3P < Size >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:314] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < std :: complex < core :: Real > >(ObjexxFCL::FArray3P < std :: complex < core :: Real > >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:314] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < std :: complex < double > >(ObjexxFCL::FArray3P < std :: complex < double > >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 314. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:328] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < FIVE > >(FArray3<BBDepScoreInterpData<FIVE>>::real_FArray const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 328. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:328] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < FOUR > >(FArray3<BBDepScoreInterpData<FOUR>>::real_FArray const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 328. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:328] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < ONE > >(FArray3<BBDepScoreInterpData<ONE>>::real_FArray const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 328. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:328] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < THREE > >(FArray3<BBDepScoreInterpData<THREE>>::real_FArray const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 328. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:328] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < TWO > >(FArray3<BBDepScoreInterpData<TWO>>::real_FArray const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 328. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:328] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < core :: Real >(FArray3 < core :: Real >::real_FArray const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 328. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:328] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < double >(FArray3 < double >::real_FArray const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 328. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:328] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P(FArray3<T>::real_FArray const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 328. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:328] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < float >(FArray3 < float >::real_FArray const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 328. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:328] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < HBEvalType >(FArray3 < HBEvalType >::real_FArray const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 328. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:328] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < platform :: Size >(FArray3<platform::Size>::real_FArray const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 328. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:328] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < Real >(FArray3 < Real >::real_FArray const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 328. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:328] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < Size >(FArray3<Size>::real_FArray const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 328. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:328] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < std :: complex < core :: Real > >(FArray3 < std :: complex < core :: Real > >::real_FArray const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 328. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:328] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < std :: complex < double > >(FArray3 < std :: complex < double > >::real_FArray const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 328. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:342] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < FIVE > >(FArray3<BBDepScoreInterpData<FIVE>>::real_FArray&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 342. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:342] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < FOUR > >(FArray3<BBDepScoreInterpData<FOUR>>::real_FArray&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 342. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:342] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < ONE > >(FArray3<BBDepScoreInterpData<ONE>>::real_FArray&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 342. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:342] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < THREE > >(FArray3<BBDepScoreInterpData<THREE>>::real_FArray&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 342. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:342] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < TWO > >(FArray3<BBDepScoreInterpData<TWO>>::real_FArray&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 342. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:342] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < core :: Real >(FArray3 < core :: Real >::real_FArray&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 342. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:342] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < double >(FArray3 < double >::real_FArray&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 342. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:342] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P(FArray3<T>::real_FArray&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 342. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:342] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < float >(FArray3 < float >::real_FArray&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 342. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:342] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < HBEvalType >(FArray3 < HBEvalType >::real_FArray&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 342. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:342] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < platform :: Size >(FArray3<platform::Size>::real_FArray&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 342. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:342] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < Real >(FArray3 < Real >::real_FArray&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 342. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:342] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < Size >(FArray3<Size>::real_FArray&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 342. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:342] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < std :: complex < core :: Real > >(FArray3 < std :: complex < core :: Real > >::real_FArray&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 342. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:342] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < std :: complex < double > >(FArray3 < std :: complex < double > >::real_FArray&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 342. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:356] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < FIVE > >(FArray3<BBDepScoreInterpData<FIVE>>const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 356. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:356] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < FOUR > >(FArray3<BBDepScoreInterpData<FOUR>>const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 356. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:356] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < ONE > >(FArray3<BBDepScoreInterpData<ONE>>const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 356. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:356] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < THREE > >(FArray3<BBDepScoreInterpData<THREE>>const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 356. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:356] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < TWO > >(FArray3<BBDepScoreInterpData<TWO>>const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 356. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:356] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < core :: Real >(FArray3 < core :: Real > const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 356. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:356] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < double >(FArray3 < double > const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 356. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:356] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P(FArray3<T>const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 356. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:356] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < float >(FArray3 < float > const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 356. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:356] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < HBEvalType >(FArray3 < HBEvalType > const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 356. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:356] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < platform :: Size >(FArray3<platform::Size>const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 356. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:356] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < Real >(FArray3 < Real > const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 356. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:356] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < Size >(FArray3<Size>const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 356. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:356] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < std :: complex < core :: Real > >(FArray3 < std :: complex < core :: Real > > const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 356. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:356] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < std :: complex < double > >(FArray3 < std :: complex < double > > const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 356. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:370] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < FIVE > >(FArray3<BBDepScoreInterpData<FIVE>>&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 370. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:370] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < FOUR > >(FArray3<BBDepScoreInterpData<FOUR>>&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 370. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:370] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < ONE > >(FArray3<BBDepScoreInterpData<ONE>>&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 370. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:370] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < THREE > >(FArray3<BBDepScoreInterpData<THREE>>&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 370. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:370] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < TWO > >(FArray3<BBDepScoreInterpData<TWO>>&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 370. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:370] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < core :: Real >(FArray3 < core :: Real >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 370. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:370] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < double >(FArray3 < double >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 370. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:370] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P(FArray3<T>&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 370. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:370] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < float >(FArray3 < float >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 370. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:370] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < HBEvalType >(FArray3 < HBEvalType >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 370. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:370] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < platform :: Size >(FArray3<platform::Size>&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 370. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:370] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < Real >(FArray3 < Real >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 370. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:370] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < Size >(FArray3<Size>&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 370. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:370] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < std :: complex < core :: Real > >(FArray3 < std :: complex < core :: Real > >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 370. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:370] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < std :: complex < double > >(FArray3 < std :: complex < double > >&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 370. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:384] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < FIVE > >(FArray3<BBDepScoreInterpData<FIVE>>::Base const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 384. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:384] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < FOUR > >(FArray3<BBDepScoreInterpData<FOUR>>::Base const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 384. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:384] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < ONE > >(FArray3<BBDepScoreInterpData<ONE>>::Base const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 384. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:384] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < THREE > >(FArray3<BBDepScoreInterpData<THREE>>::Base const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 384. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:384] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < TWO > >(FArray3<BBDepScoreInterpData<TWO>>::Base const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 384. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:384] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < core :: Real >(FArray3 < core :: Real >::Base const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 384. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:384] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < double >(FArray3 < double >::Base const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 384. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:384] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P(FArray3<T>::Base const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 384. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:384] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < float >(FArray3 < float >::Base const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 384. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:384] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < HBEvalType >(FArray3 < HBEvalType >::Base const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 384. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:384] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < platform :: Size >(FArray3<platform::Size>::Base const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 384. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:384] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < Real >(FArray3 < Real >::Base const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 384. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:384] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < Size >(FArray3<Size>::Base const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 384. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:384] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < std :: complex < core :: Real > >(FArray3 < std :: complex < core :: Real > >::Base const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 384. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:384] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < std :: complex < double > >(FArray3 < std :: complex < double > >::Base const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 384. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:398] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < FIVE > >(FArray3<BBDepScoreInterpData<FIVE>>::Base&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 398. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:398] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < FOUR > >(FArray3<BBDepScoreInterpData<FOUR>>::Base&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 398. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:398] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < ONE > >(FArray3<BBDepScoreInterpData<ONE>>::Base&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 398. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:398] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < THREE > >(FArray3<BBDepScoreInterpData<THREE>>::Base&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 398. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:398] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < TWO > >(FArray3<BBDepScoreInterpData<TWO>>::Base&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 398. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:398] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < core :: Real >(FArray3 < core :: Real >::Base&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 398. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:398] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < double >(FArray3 < double >::Base&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 398. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:398] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P(FArray3<T>::Base&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 398. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:398] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < float >(FArray3 < float >::Base&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 398. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:398] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < HBEvalType >(FArray3 < HBEvalType >::Base&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 398. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:398] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < platform :: Size >(FArray3<platform::Size>::Base&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 398. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:398] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < Real >(FArray3 < Real >::Base&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 398. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:398] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < Size >(FArray3<Size>::Base&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 398. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:398] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < std :: complex < core :: Real > >(FArray3 < std :: complex < core :: Real > >::Base&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 398. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:398] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < std :: complex < double > >(FArray3 < std :: complex < double > >::Base&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 398. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:412] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < FIVE > >(FArray3<BBDepScoreInterpData<FIVE>>::Base::Section const&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 412. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:412] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < FOUR > >(FArray3<BBDepScoreInterpData<FOUR>>::Base::Section const&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 412. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:412] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < ONE > >(FArray3<BBDepScoreInterpData<ONE>>::Base::Section const&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 412. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:412] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < THREE > >(FArray3<BBDepScoreInterpData<THREE>>::Base::Section const&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 412. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:412] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < TWO > >(FArray3<BBDepScoreInterpData<TWO>>::Base::Section const&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 412. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:412] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < core :: Real >(FArray3 < core :: Real >::Base::Section const&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 412. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:412] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < double >(FArray3 < double >::Base::Section const&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 412. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:412] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P(FArray3<T>::Base::Section const&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 412. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:412] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < float >(FArray3 < float >::Base::Section const&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 412. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:412] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < HBEvalType >(FArray3 < HBEvalType >::Base::Section const&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 412. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:412] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < platform :: Size >(FArray3<platform::Size>::Base::Section const&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 412. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:412] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < Real >(FArray3 < Real >::Base::Section const&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 412. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:412] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < Size >(FArray3<Size>::Base::Section const&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 412. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:412] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < std :: complex < core :: Real > >(FArray3 < std :: complex < core :: Real > >::Base::Section const&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 412. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:412] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < std :: complex < double > >(FArray3 < std :: complex < double > >::Base::Section const&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 412. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:426] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < FIVE > >(FArray3<BBDepScoreInterpData<FIVE>>::Base::Section&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 426. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:426] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < FOUR > >(FArray3<BBDepScoreInterpData<FOUR>>::Base::Section&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 426. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:426] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < ONE > >(FArray3<BBDepScoreInterpData<ONE>>::Base::Section&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 426. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:426] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < THREE > >(FArray3<BBDepScoreInterpData<THREE>>::Base::Section&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 426. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:426] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < TWO > >(FArray3<BBDepScoreInterpData<TWO>>::Base::Section&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 426. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:426] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < core :: Real >(FArray3 < core :: Real >::Base::Section&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 426. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:426] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < double >(FArray3 < double >::Base::Section&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 426. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:426] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P(FArray3<T>::Base::Section&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 426. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:426] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < float >(FArray3 < float >::Base::Section&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 426. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:426] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < HBEvalType >(FArray3 < HBEvalType >::Base::Section&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 426. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:426] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < platform :: Size >(FArray3<platform::Size>::Base::Section&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 426. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:426] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < Real >(FArray3 < Real >::Base::Section&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 426. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:426] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < Size >(FArray3<Size>::Base::Section&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 426. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:426] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < std :: complex < core :: Real > >(FArray3 < std :: complex < core :: Real > >::Base::Section&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 426. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:426] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < std :: complex < double > >(FArray3 < std :: complex < double > >::Base::Section&s,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 426. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:440] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < FIVE > >(const BBDepScoreInterpData<FIVE>&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 440. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:440] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < FOUR > >(const BBDepScoreInterpData<FOUR>&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 440. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:440] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < ONE > >(const BBDepScoreInterpData<ONE>&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 440. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:440] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < THREE > >(const BBDepScoreInterpData<THREE>&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 440. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:440] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < TWO > >(const BBDepScoreInterpData<TWO>&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 440. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:440] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P(const T&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 440. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:440] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < core :: Real >(const core::Real&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 440. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:440] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < double >(const double&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 440. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:440] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < float >(const float&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 440. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:440] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < HBEvalType >(const HBEvalType&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 440. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:440] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < platform :: Size >(const platform::Size&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 440. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:440] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < Real >(const Real&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 440. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:440] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < Size >(const Size&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 440. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:440] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < std :: complex < core :: Real > >(const std::complex<core::Real>&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 440. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:440] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < std :: complex < double > >(const std::complex<double>&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 440. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:454] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < FIVE > >(BBDepScoreInterpData<FIVE>&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 454. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:454] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < FOUR > >(BBDepScoreInterpData<FOUR>&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 454. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:454] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < ONE > >(BBDepScoreInterpData<ONE>&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 454. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:454] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < THREE > >(BBDepScoreInterpData<THREE>&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 454. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:454] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < BBDepScoreInterpData < TWO > >(BBDepScoreInterpData<TWO>&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 454. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:454] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < core :: Real >(core::Real&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 454. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:454] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < double >(double&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 454. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:454] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < float >(float&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 454. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:454] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < HBEvalType >(HBEvalType&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 454. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:454] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < platform :: Size >(platform::Size&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 454. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:454] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < Real >(Real&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 454. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:454] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < Size >(Size&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 454. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:454] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < std :: complex < core :: Real > >(std::complex<core::Real>&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 454. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:454] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P < std :: complex < double > >(std::complex<double>&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 454. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray3P.hh:454] -> [ObjexxFCL/FArray3P.hh:1113] -> [ObjexxFCL/FArray3P.hh:643]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray3P(T&t,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a)' at line 454. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray4.hh:392] -> [ObjexxFCL/FArray4A.hh:680]: (style) The function 'contains' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray4.hh:392] -> [ObjexxFCL/FArray4P.hh:683]: (style) The function 'contains' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray4.hh:420] -> [ObjexxFCL/FArray4A.hh:710]: (style) The function 'l1' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray4.hh:420] -> [ObjexxFCL/FArray4P.hh:713]: (style) The function 'l1' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray4.hh:420] -> [ObjexxFCL/KeyFArray4D.hh:493]: (style) The function 'l1' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray4.hh:426] -> [ObjexxFCL/FArray4A.hh:719]: (style) The function 'u1' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray4.hh:426] -> [ObjexxFCL/FArray4P.hh:722]: (style) The function 'u1' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray4.hh:426] -> [ObjexxFCL/KeyFArray4D.hh:502]: (style) The function 'u1' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray4.hh:447] -> [ObjexxFCL/FArray4A.hh:737]: (style) The function 'l2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray4.hh:447] -> [ObjexxFCL/FArray4P.hh:740]: (style) The function 'l2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray4.hh:447] -> [ObjexxFCL/KeyFArray4D.hh:520]: (style) The function 'l2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray4.hh:453] -> [ObjexxFCL/FArray4A.hh:746]: (style) The function 'u2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray4.hh:453] -> [ObjexxFCL/FArray4P.hh:749]: (style) The function 'u2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray4.hh:453] -> [ObjexxFCL/KeyFArray4D.hh:529]: (style) The function 'u2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray4.hh:474] -> [ObjexxFCL/FArray4A.hh:764]: (style) The function 'l3' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray4.hh:474] -> [ObjexxFCL/FArray4P.hh:767]: (style) The function 'l3' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray4.hh:474] -> [ObjexxFCL/KeyFArray4D.hh:547]: (style) The function 'l3' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray4.hh:480] -> [ObjexxFCL/FArray4A.hh:773]: (style) The function 'u3' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray4.hh:480] -> [ObjexxFCL/FArray4P.hh:776]: (style) The function 'u3' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray4.hh:480] -> [ObjexxFCL/KeyFArray4D.hh:556]: (style) The function 'u3' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray4.hh:501] -> [ObjexxFCL/FArray4A.hh:791]: (style) The function 'l4' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray4.hh:501] -> [ObjexxFCL/FArray4P.hh:794]: (style) The function 'l4' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray4.hh:501] -> [ObjexxFCL/KeyFArray4D.hh:574]: (style) The function 'l4' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray4.hh:507] -> [ObjexxFCL/FArray4A.hh:800]: (style) The function 'u4' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray4.hh:507] -> [ObjexxFCL/FArray4P.hh:803]: (style) The function 'u4' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray4.hh:507] -> [ObjexxFCL/KeyFArray4D.hh:583]: (style) The function 'u4' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5D.hh:165] -> [ObjexxFCL/FArray5D.hh:1056] -> [ObjexxFCL/FArray5D.hh:466]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray5D(const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a,const DynamicIndexRange&I4_a,const DynamicIndexRange&I5_a)' at line 165. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray5D.hh:165] -> [ObjexxFCL/FArray5D.hh:1056] -> [ObjexxFCL/FArray5D.hh:466]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray5D < int >(const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a,const DynamicIndexRange&I4_a,const DynamicIndexRange&I5_a)' at line 165. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray5D.hh:165] -> [ObjexxFCL/FArray5D.hh:1056] -> [ObjexxFCL/FArray5D.hh:466]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray5D < Real >(const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a,const DynamicIndexRange&I4_a,const DynamicIndexRange&I5_a)' at line 165. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray5D.hh:181] -> [ObjexxFCL/FArray5D.hh:1056] -> [ObjexxFCL/FArray5D.hh:466]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray5D(const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a,const DynamicIndexRange&I4_a,const DynamicIndexRange&I5_a,const T&t)' at line 181. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray5D.hh:181] -> [ObjexxFCL/FArray5D.hh:1056] -> [ObjexxFCL/FArray5D.hh:466]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray5D < int >(const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a,const DynamicIndexRange&I4_a,const DynamicIndexRange&I5_a,const int&t)' at line 181. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray5D.hh:181] -> [ObjexxFCL/FArray5D.hh:1056] -> [ObjexxFCL/FArray5D.hh:466]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray5D < Real >(const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a,const DynamicIndexRange&I4_a,const DynamicIndexRange&I5_a,const Real&t)' at line 181. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray5D.hh:182] -> [ObjexxFCL/FArray5D.hh:843] -> [ObjexxFCL/FArray5D.hh:466]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray5D(const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a,const DynamicIndexRange&I4_a,const DynamicIndexRange&I5_a,const T&t)' at line 182. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray5D.hh:182] -> [ObjexxFCL/FArray5D.hh:843] -> [ObjexxFCL/FArray5D.hh:466]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray5D < int >(const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a,const DynamicIndexRange&I4_a,const DynamicIndexRange&I5_a,const int&t)' at line 182. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray5D.hh:182] -> [ObjexxFCL/FArray5D.hh:843] -> [ObjexxFCL/FArray5D.hh:466]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray5D < Real >(const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a,const DynamicIndexRange&I4_a,const DynamicIndexRange&I5_a,const Real&t)' at line 182. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray5D.hh:198] -> [ObjexxFCL/FArray5D.hh:1056] -> [ObjexxFCL/FArray5D.hh:466]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray5D(const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a,const DynamicIndexRange&I4_a,const DynamicIndexRange&I5_a,FArrayInitializer<T,ObjexxFCL::FArray5D>::function_type const&function_a)' at line 198. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray5D.hh:198] -> [ObjexxFCL/FArray5D.hh:1056] -> [ObjexxFCL/FArray5D.hh:466]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray5D < int >(const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a,const DynamicIndexRange&I4_a,const DynamicIndexRange&I5_a,FArrayInitializer < int , ObjexxFCL :: FArray5D < int > >::function_type const&function_a)' at line 198. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray5D.hh:198] -> [ObjexxFCL/FArray5D.hh:1056] -> [ObjexxFCL/FArray5D.hh:466]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray5D < Real >(const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a,const DynamicIndexRange&I4_a,const DynamicIndexRange&I5_a,FArrayInitializer < Real , ObjexxFCL :: FArray5D < Real > >::function_type const&function_a)' at line 198. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray5D.hh:199] -> [ObjexxFCL/FArray5D.hh:843] -> [ObjexxFCL/FArray5D.hh:466]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray5D(const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a,const DynamicIndexRange&I4_a,const DynamicIndexRange&I5_a,FArrayInitializer<T,ObjexxFCL::FArray5D>::function_type const&function_a)' at line 199. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray5D.hh:199] -> [ObjexxFCL/FArray5D.hh:843] -> [ObjexxFCL/FArray5D.hh:466]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray5D < int >(const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a,const DynamicIndexRange&I4_a,const DynamicIndexRange&I5_a,FArrayInitializer < int , ObjexxFCL :: FArray5D < int > >::function_type const&function_a)' at line 199. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray5D.hh:199] -> [ObjexxFCL/FArray5D.hh:843] -> [ObjexxFCL/FArray5D.hh:466]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray5D < Real >(const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a,const DynamicIndexRange&I4_a,const DynamicIndexRange&I5_a,FArrayInitializer < Real , ObjexxFCL :: FArray5D < Real > >::function_type const&function_a)' at line 199. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray5D.hh:215] -> [ObjexxFCL/FArray5D.hh:1056] -> [ObjexxFCL/FArray5D.hh:466]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray5D(FArray5<U>const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a,const DynamicIndexRange&I4_a,const DynamicIndexRange&I5_a)' at line 215. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray5D.hh:215] -> [ObjexxFCL/FArray5D.hh:1056] -> [ObjexxFCL/FArray5D.hh:466]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray5D < int >(FArray5<U>const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a,const DynamicIndexRange&I4_a,const DynamicIndexRange&I5_a)' at line 215. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray5D.hh:215] -> [ObjexxFCL/FArray5D.hh:1056] -> [ObjexxFCL/FArray5D.hh:466]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray5D < Real >(FArray5<U>const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a,const DynamicIndexRange&I4_a,const DynamicIndexRange&I5_a)' at line 215. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray5D.hh:216] -> [ObjexxFCL/FArray5D.hh:466]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray5D(FArray5<U>const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a,const DynamicIndexRange&I4_a,const DynamicIndexRange&I5_a)' at line 216. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray5D.hh:216] -> [ObjexxFCL/FArray5D.hh:466]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray5D < int >(FArray5<U>const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a,const DynamicIndexRange&I4_a,const DynamicIndexRange&I5_a)' at line 216. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray5D.hh:216] -> [ObjexxFCL/FArray5D.hh:466]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray5D < Real >(FArray5<U>const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a,const DynamicIndexRange&I4_a,const DynamicIndexRange&I5_a)' at line 216. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray5D.hh:251] -> [ObjexxFCL/FArray5D.hh:1056] -> [ObjexxFCL/FArray5D.hh:466]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray5D(FArray5<U>const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a,const DynamicIndexRange&I4_a,const DynamicIndexRange&I5_a,const T&t)' at line 251. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray5D.hh:251] -> [ObjexxFCL/FArray5D.hh:1056] -> [ObjexxFCL/FArray5D.hh:466]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray5D < int >(FArray5<U>const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a,const DynamicIndexRange&I4_a,const DynamicIndexRange&I5_a,const int&t)' at line 251. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray5D.hh:251] -> [ObjexxFCL/FArray5D.hh:1056] -> [ObjexxFCL/FArray5D.hh:466]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray5D < Real >(FArray5<U>const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a,const DynamicIndexRange&I4_a,const DynamicIndexRange&I5_a,const Real&t)' at line 251. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray5D.hh:252] -> [ObjexxFCL/FArray5D.hh:466]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray5D(FArray5<U>const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a,const DynamicIndexRange&I4_a,const DynamicIndexRange&I5_a,const T&t)' at line 252. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray5D.hh:252] -> [ObjexxFCL/FArray5D.hh:466]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray5D < int >(FArray5<U>const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a,const DynamicIndexRange&I4_a,const DynamicIndexRange&I5_a,const int&t)' at line 252. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray5D.hh:252] -> [ObjexxFCL/FArray5D.hh:466]: (warning) Virtual function 'dimensions_initialized' is called from constructor 'FArray5D < Real >(FArray5<U>const&a,const DynamicIndexRange&I1_a,const DynamicIndexRange&I2_a,const DynamicIndexRange&I3_a,const DynamicIndexRange&I4_a,const DynamicIndexRange&I5_a,const Real&t)' at line 252. Dynamic binding is not used. [virtualCallInConstructor]
[ObjexxFCL/FArray5.hh:396] -> [ObjexxFCL/FArray5A.hh:717]: (style) The function 'contains' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:396] -> [ObjexxFCL/FArray5P.hh:714]: (style) The function 'contains' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:424] -> [ObjexxFCL/FArray5A.hh:747]: (style) The function 'l1' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:424] -> [ObjexxFCL/FArray5P.hh:744]: (style) The function 'l1' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:424] -> [ObjexxFCL/KeyFArray5D.hh:508]: (style) The function 'l1' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:430] -> [ObjexxFCL/FArray5A.hh:756]: (style) The function 'u1' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:430] -> [ObjexxFCL/FArray5P.hh:753]: (style) The function 'u1' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:430] -> [ObjexxFCL/KeyFArray5D.hh:517]: (style) The function 'u1' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:451] -> [ObjexxFCL/FArray5A.hh:774]: (style) The function 'l2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:451] -> [ObjexxFCL/FArray5P.hh:771]: (style) The function 'l2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:451] -> [ObjexxFCL/KeyFArray5D.hh:535]: (style) The function 'l2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:457] -> [ObjexxFCL/FArray5A.hh:783]: (style) The function 'u2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:457] -> [ObjexxFCL/FArray5P.hh:780]: (style) The function 'u2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:457] -> [ObjexxFCL/KeyFArray5D.hh:544]: (style) The function 'u2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:478] -> [ObjexxFCL/FArray5A.hh:801]: (style) The function 'l3' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:478] -> [ObjexxFCL/FArray5P.hh:798]: (style) The function 'l3' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:478] -> [ObjexxFCL/KeyFArray5D.hh:562]: (style) The function 'l3' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:484] -> [ObjexxFCL/FArray5A.hh:810]: (style) The function 'u3' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:484] -> [ObjexxFCL/FArray5P.hh:807]: (style) The function 'u3' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:484] -> [ObjexxFCL/KeyFArray5D.hh:571]: (style) The function 'u3' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:505] -> [ObjexxFCL/FArray5A.hh:828]: (style) The function 'l4' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:505] -> [ObjexxFCL/FArray5P.hh:825]: (style) The function 'l4' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:505] -> [ObjexxFCL/KeyFArray5D.hh:589]: (style) The function 'l4' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:511] -> [ObjexxFCL/FArray5A.hh:837]: (style) The function 'u4' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:511] -> [ObjexxFCL/FArray5P.hh:834]: (style) The function 'u4' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:511] -> [ObjexxFCL/KeyFArray5D.hh:598]: (style) The function 'u4' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:532] -> [ObjexxFCL/FArray5A.hh:855]: (style) The function 'l5' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:532] -> [ObjexxFCL/FArray5P.hh:852]: (style) The function 'l5' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:532] -> [ObjexxFCL/KeyFArray5D.hh:616]: (style) The function 'l5' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:538] -> [ObjexxFCL/FArray5A.hh:864]: (style) The function 'u5' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:538] -> [ObjexxFCL/FArray5P.hh:861]: (style) The function 'u5' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray5.hh:538] -> [ObjexxFCL/KeyFArray5D.hh:625]: (style) The function 'u5' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:401] -> [ObjexxFCL/FArray6A.hh:754]: (style) The function 'contains' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:401] -> [ObjexxFCL/FArray6D.hh:490]: (style) The function 'contains' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:401] -> [ObjexxFCL/FArray6P.hh:745]: (style) The function 'contains' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:429] -> [ObjexxFCL/FArray6A.hh:784]: (style) The function 'l1' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:429] -> [ObjexxFCL/FArray6D.hh:520]: (style) The function 'l1' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:429] -> [ObjexxFCL/FArray6P.hh:775]: (style) The function 'l1' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:429] -> [ObjexxFCL/KeyFArray6D.hh:523]: (style) The function 'l1' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:435] -> [ObjexxFCL/FArray6A.hh:793]: (style) The function 'u1' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:435] -> [ObjexxFCL/FArray6D.hh:529]: (style) The function 'u1' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:435] -> [ObjexxFCL/FArray6P.hh:784]: (style) The function 'u1' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:435] -> [ObjexxFCL/KeyFArray6D.hh:532]: (style) The function 'u1' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:456] -> [ObjexxFCL/FArray6A.hh:811]: (style) The function 'l2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:456] -> [ObjexxFCL/FArray6D.hh:547]: (style) The function 'l2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:456] -> [ObjexxFCL/FArray6P.hh:802]: (style) The function 'l2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:456] -> [ObjexxFCL/KeyFArray6D.hh:550]: (style) The function 'l2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:462] -> [ObjexxFCL/FArray6A.hh:820]: (style) The function 'u2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:462] -> [ObjexxFCL/FArray6D.hh:556]: (style) The function 'u2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:462] -> [ObjexxFCL/FArray6P.hh:811]: (style) The function 'u2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:462] -> [ObjexxFCL/KeyFArray6D.hh:559]: (style) The function 'u2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:483] -> [ObjexxFCL/FArray6A.hh:838]: (style) The function 'l3' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:483] -> [ObjexxFCL/FArray6D.hh:574]: (style) The function 'l3' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:483] -> [ObjexxFCL/FArray6P.hh:829]: (style) The function 'l3' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:483] -> [ObjexxFCL/KeyFArray6D.hh:577]: (style) The function 'l3' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:489] -> [ObjexxFCL/FArray6A.hh:847]: (style) The function 'u3' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:489] -> [ObjexxFCL/FArray6D.hh:583]: (style) The function 'u3' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:489] -> [ObjexxFCL/FArray6P.hh:838]: (style) The function 'u3' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:489] -> [ObjexxFCL/KeyFArray6D.hh:586]: (style) The function 'u3' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:510] -> [ObjexxFCL/FArray6A.hh:865]: (style) The function 'l4' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:510] -> [ObjexxFCL/FArray6D.hh:601]: (style) The function 'l4' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:510] -> [ObjexxFCL/FArray6P.hh:856]: (style) The function 'l4' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:510] -> [ObjexxFCL/KeyFArray6D.hh:604]: (style) The function 'l4' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:516] -> [ObjexxFCL/FArray6A.hh:874]: (style) The function 'u4' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:516] -> [ObjexxFCL/FArray6D.hh:610]: (style) The function 'u4' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:516] -> [ObjexxFCL/FArray6P.hh:865]: (style) The function 'u4' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:516] -> [ObjexxFCL/KeyFArray6D.hh:613]: (style) The function 'u4' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:537] -> [ObjexxFCL/FArray6A.hh:892]: (style) The function 'l5' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:537] -> [ObjexxFCL/FArray6D.hh:628]: (style) The function 'l5' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:537] -> [ObjexxFCL/FArray6P.hh:883]: (style) The function 'l5' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:537] -> [ObjexxFCL/KeyFArray6D.hh:631]: (style) The function 'l5' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:543] -> [ObjexxFCL/FArray6A.hh:901]: (style) The function 'u5' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:543] -> [ObjexxFCL/FArray6D.hh:637]: (style) The function 'u5' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:543] -> [ObjexxFCL/FArray6P.hh:892]: (style) The function 'u5' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:543] -> [ObjexxFCL/KeyFArray6D.hh:640]: (style) The function 'u5' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:564] -> [ObjexxFCL/FArray6A.hh:919]: (style) The function 'l6' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:564] -> [ObjexxFCL/FArray6D.hh:655]: (style) The function 'l6' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:564] -> [ObjexxFCL/FArray6P.hh:910]: (style) The function 'l6' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:564] -> [ObjexxFCL/KeyFArray6D.hh:658]: (style) The function 'l6' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:570] -> [ObjexxFCL/FArray6A.hh:928]: (style) The function 'u6' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:570] -> [ObjexxFCL/FArray6D.hh:664]: (style) The function 'u6' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:570] -> [ObjexxFCL/FArray6P.hh:919]: (style) The function 'u6' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArray6.hh:570] -> [ObjexxFCL/KeyFArray6D.hh:667]: (style) The function 'u6' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[ObjexxFCL/FArrayInitializer.hh:110]: (style) Variable 'state_' is assigned a value that is never used. [unreadVariable]
[ObjexxFCL/FArrayInitializer.hh:175]: (style) Variable 'state_' is assigned a value that is never used. [unreadVariable]
[ObjexxFCL/FArrayInitializer.hh:96]: (style) Parameter 'value_a' can be declared with const [constParameter]
[ObjexxFCL/FArrayInitializer.hh:98]: (style) Variable 'state_' is assigned a value that is never used. [unreadVariable]
[ObjexxFCL/Fstring.cc:1620]: (style) Parameter 's' can be declared with const [constParameter]
[ObjexxFCL/Fstring.cc:1648]: (style) Parameter 's' can be declared with const [constParameter]
[ObjexxFCL/Fstring.cc:1657]: (style) Parameter 's' can be declared with const [constParameter]
[ObjexxFCL/ObserverMulti.hh:72]: (warning) Member variable 'ObserverMulti::observers_p_' is not assigned a value in 'ObserverMulti::operator='. [operatorEqVarError]
[ObjexxFCL/ObserverSingle.hh:69]: (warning) Member variable 'ObserverSingle::observer_p_' is not assigned a value in 'ObserverSingle::operator='. [operatorEqVarError]
[ObjexxFCL/string.functions.hh:267] -> [ObjexxFCL/Fstring.cc:955]: (style) Local variable 'pad' shadows outer function [shadowFunction]
[protocols/abinitio/AbrelaxApplication.cc:1272]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/abinitio/AbrelaxApplication.cc:1628]: (style) Parameter 'init_pose' can be declared with const [constParameter]
[protocols/abinitio/AbrelaxApplication.cc:1981]: (style) Variable 'orig_cst' is assigned a value that is never used. [unreadVariable]
[protocols/abinitio/abscript/AbscriptMover.cc:172]: (performance) Variable 'mc_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/abscript/AbscriptMover.cc:620]: (performance) Function parameter 'tag_name' should be passed by const reference. [passedByValue]
[protocols/abinitio/abscript/AbscriptMover.cc:717]: (warning) Member variable 'StageTracker::starttime_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/abscript/AbscriptMover.cc:723]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/abinitio/abscript/AbscriptStageMover.cc:73]: (performance) Variable 'random_mover_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/abscript/StructPerturberCM.cc:96]: (style) Variable 'mm' is assigned a value that is never used. [unreadVariable]
[protocols/abinitio/ClassicAbinitio.cc:141]: (warning) Member variable 'ClassicAbinitio::apply_large_frags_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/ClassicAbinitio.cc:141]: (warning) Member variable 'ClassicAbinitio::bQuickTest_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/ClassicAbinitio.cc:141]: (warning) Member variable 'ClassicAbinitio::bSkipStage3_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/ClassicAbinitio.cc:141]: (warning) Member variable 'ClassicAbinitio::bSkipStage4_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/ClassicAbinitio.cc:141]: (warning) Member variable 'ClassicAbinitio::bSkipStage5_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/ClassicAbinitio.cc:141]: (warning) Member variable 'ClassicAbinitio::just_smooth_cycles_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/ClassicAbinitio.cc:141]: (warning) Member variable 'ClassicAbinitio::short_insert_region_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/ClassicAbinitio.cc:165]: (warning) Member variable 'ClassicAbinitio::apply_large_frags_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/ClassicAbinitio.cc:165]: (warning) Member variable 'ClassicAbinitio::bQuickTest_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/ClassicAbinitio.cc:165]: (warning) Member variable 'ClassicAbinitio::bSkipStage3_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/ClassicAbinitio.cc:165]: (warning) Member variable 'ClassicAbinitio::bSkipStage4_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/ClassicAbinitio.cc:165]: (warning) Member variable 'ClassicAbinitio::bSkipStage5_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/ClassicAbinitio.cc:165]: (warning) Member variable 'ClassicAbinitio::just_smooth_cycles_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/ClassicAbinitio.cc:165]: (warning) Member variable 'ClassicAbinitio::short_insert_region_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/ClassicAbinitio.cc:230]: (performance) Variable 'stage1_cycles_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/ClassicAbinitio.cc:231]: (performance) Variable 'stage2_cycles_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/ClassicAbinitio.cc:232]: (performance) Variable 'stage3_cycles_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/ClassicAbinitio.cc:233]: (performance) Variable 'stage4_cycles_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/ClassicAbinitio.cc:234]: (performance) Variable 'stage5_cycles_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/ClassicAbinitio.cc:235]: (performance) Variable 'score_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/ClassicAbinitio.cc:236]: (performance) Variable 'score_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/ClassicAbinitio.cc:237]: (performance) Variable 'score_stage3a_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/ClassicAbinitio.cc:238]: (performance) Variable 'score_stage3b_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/ClassicAbinitio.cc:239]: (performance) Variable 'score_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/ClassicAbinitio.cc:240]: (performance) Variable 'score_stage4rot_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/ClassicAbinitio.cc:241]: (performance) Variable 'score_stage5_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/ClassicAbinitio.cc:247]: (performance) Variable 'temperature_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/ClassicAbinitio.cc:248]: (performance) Variable 'movemap_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/ClassicAbinitio.cc:249]: (performance) Variable 'mc_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/ClassicAbinitio.cc:250]: (performance) Variable 'brute_move_small_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/ClassicAbinitio.cc:251]: (performance) Variable 'brute_move_large_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/ClassicAbinitio.cc:252]: (performance) Variable 'smooth_move_small_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/ClassicAbinitio.cc:253]: (performance) Variable 'trial_large_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/ClassicAbinitio.cc:254]: (performance) Variable 'trial_small_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/ClassicAbinitio.cc:255]: (performance) Variable 'smooth_trial_small_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/ClassicAbinitio.cc:256]: (performance) Variable 'total_trials_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/ClassicAbinitio.cc:262]: (performance) Variable 'recover_low_stages_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/DomainAssembly.cc:65]: (warning) Member variable 'DomainAssembly::fragments_set_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/DoubleLayerKinematicAbinitio.hh:64]: (performance) Function parameter 'extended_loops' should be passed by const reference. [passedByValue]
[protocols/abinitio/DoubleLayerKinematicAbinitio.hh:65]: (performance) Function parameter 'rigid_core' should be passed by const reference. [passedByValue]
[protocols/abinitio/FoldConstraints.cc:118]: (performance) Variable 'min_move_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/FoldConstraints.cc:119]: (performance) Variable 'constraints_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/FoldConstraints.cc:120]: (performance) Variable 'constraint_weight_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/FoldConstraints.cc:123]: (performance) Variable 'run_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/FoldConstraints.cc:124]: (performance) Variable 'max_seq_sep_fudge_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/FoldConstraints.cc:125]: (performance) Variable 'seq_sep_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/FoldConstraints.cc:126]: (performance) Variable 'seq_sep_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/FoldConstraints.cc:127]: (performance) Variable 'seq_sep_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/FoldConstraints.cc:128]: (performance) Variable 'start_ramp_cstweight_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/FoldConstraints.cc:129]: (performance) Variable 'ramp_cst_cycles_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/FoldConstraints.cc:130]: (performance) Variable 'ramp_iterations_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/FoldConstraints.cc:132]: (performance) Variable 'show_viol_level_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/FoldConstraints.cc:133]: (performance) Variable 'constraint_threshold_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/HedgeArchive.cc:46]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[protocols/abinitio/IterativeBase.cc:1036]: (style) Parameter 'batch' can be declared with const [constParameter]
[protocols/abinitio/IterativeBase.cc:1080]: (style) Parameter 'batch' can be declared with const [constParameter]
[protocols/abinitio/IterativeBase.cc:1208]: (style) Parameter 'batch' can be declared with const [constParameter]
[protocols/abinitio/IterativeBase.cc:124] -> [protocols/noesy_assign/CrossPeakList.impl.hh:105]: (style) Local variable 'tr' shadows outer variable [shadowVariable]
[protocols/abinitio/IterativeBase.cc:124] -> [protocols/noesy_assign/CrossPeakList.impl.hh:65]: (style) Local variable 'tr' shadows outer variable [shadowVariable]
[protocols/abinitio/IterativeBase.cc:1274]: (style) Parameter 'batch' can be declared with const [constParameter]
[protocols/abinitio/IterativeBase.cc:1538]: (style) Parameter 'batch' can be declared with const [constParameter]
[protocols/abinitio/IterativeBase.cc:1794] -> [protocols/abinitio/IterativeBase.cc:1830]: (style) Local variable 'score_patch' shadows outer variable [shadowVariable]
[protocols/abinitio/IterativeBase.cc:1859]: (style) Parameter 'batch' can be declared with const [constParameter]
[protocols/abinitio/IterativeBase.cc:2011]: (style) Variable 'loops' is assigned a value that is never used. [unreadVariable]
[protocols/abinitio/IterativeBase.cc:366]: (performance) Function parameter 'name_in' should be passed by const reference. [passedByValue]
[protocols/abinitio/IterativeBase.cc:366]: (warning) Member variable 'IterativeBase::bDoBetaJumping_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/IterativeBase.cc:366]: (warning) Member variable 'IterativeBase::noesy_assign_hash_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/IterativeBase.cc:475] -> [protocols/abinitio/IterativeBase.cc:530]: (style) Local variable 'scorefxn' shadows outer variable [shadowVariable]
[protocols/abinitio/IterativeBase.cc:841]: (style) Parameter 'batch' can be declared with const [constParameter]
[protocols/abinitio/IterativeFullatom.cc:88]: (performance) Variable 'perturb_start_structures_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/KinematicAbinitio.cc:145]: (warning) Member variable 'KinematicAbinitio::bOverlapChainbreaks_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/KinematicAbinitio.cc:159]: (warning) Member variable 'KinematicAbinitio::bOverlapChainbreaks_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/KinematicTaskControl.hh:61]: (warning) Member variable 'KinematicTaskControl::b_input_is_fullatom_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/KinematicTaskControl.hh:68]: (warning) Member variable 'KinematicTaskControl::b_input_is_fullatom_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/LoopJumpFoldCst.hh:67]: (performance) Function parameter 'loops' should be passed by const reference. [passedByValue]
[protocols/abinitio/LoopJumpFoldCst.hh:80]: (performance) Variable 'dump_weights_file_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/MembraneAbinitio.cc:140]: (warning) Member variable 'MembraneAbinitio::apply_large_frags_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/MembraneAbinitio.cc:140]: (warning) Member variable 'MembraneAbinitio::bQuickTest_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/MembraneAbinitio.cc:140]: (warning) Member variable 'MembraneAbinitio::just_smooth_cycles_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/MembraneAbinitio.cc:140]: (warning) Member variable 'MembraneAbinitio::only_stage4_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/MembraneAbinitio.cc:140]: (warning) Member variable 'MembraneAbinitio::short_insert_region_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/MembraneAbinitio.cc:1622]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[protocols/abinitio/MembraneAbinitio.cc:162]: (warning) Member variable 'MembraneAbinitio::apply_large_frags_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/MembraneAbinitio.cc:162]: (warning) Member variable 'MembraneAbinitio::bQuickTest_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/MembraneAbinitio.cc:162]: (warning) Member variable 'MembraneAbinitio::just_smooth_cycles_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/MembraneAbinitio.cc:162]: (warning) Member variable 'MembraneAbinitio::only_stage4_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/MembraneAbinitio.cc:162]: (warning) Member variable 'MembraneAbinitio::short_insert_region_' is not initialized in the constructor. [uninitMemberVar]
[protocols/abinitio/MembraneAbinitio.cc:971]: (style) Variable 'topology' can be declared with const [constVariable]
[protocols/abinitio/PairingStatistics.cc:134] -> [protocols/abinitio/PairingStatistics.cc:136]: (style) Local variable 'new_pairing' shadows outer variable [shadowVariable]
[protocols/abinitio/Protocol.hh:116]: (performance) Function parameter 'str' should be passed by const reference. [passedByValue]
[protocols/abinitio/Template.cc:107]: (performance) Variable 'pose_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/Template.cc:108]: (performance) Variable 'mapping_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/Template.cc:109]: (performance) Variable 'reverse_mapping_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/Template.cc:131]: (performance) Variable 'mapping_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/abinitio/TemplateJumpSetup.cc:116] -> [protocols/abinitio/TemplateJumpSetup.cc:130]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/abinitio/Templates.cc:292]: (style) Condition 'bScoreFilter' is always true [knownConditionTrueFalse]
[protocols/abinitio/Templates.cc:301]: (style) Condition '!bScoreFilter' is always false [knownConditionTrueFalse]
[protocols/abinitio/Templates.cc:469] -> [protocols/abinitio/Templates.cc:483]: (style) Local variable 'it' shadows outer variable [shadowVariable]
[protocols/abinitio/Templates.cc:469] -> [protocols/abinitio/Templates.cc:494]: (style) Local variable 'it' shadows outer variable [shadowVariable]
[protocols/analysis/InterfaceAnalyzerMover.cc:1632]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[protocols/analysis/InterfaceAnalyzerMover.cc:180]: (performance) Function parameter 'dock_chains' should be passed by const reference. [passedByValue]
[protocols/analysis/InterfaceAnalyzerMover.cc:466]: (performance) Inefficient usage of string::find() in condition; string::starts_with() could be faster. [stlIfStrFind]
[protocols/analysis/LoopAnalyzerFilter.cc:45]: (warning) Member variable 'LoopAnalyzerFilter::tracer_' is not initialized in the constructor. [uninitMemberVar]
[protocols/analysis/PackStatMover.cc:58]: (performance) Variable 'cavity_burial_probe_radius_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/AntibodyFeatures.cc:68]: (performance) Variable 'ab_info_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/AntibodyFeatures.cc:76]: (performance) Variable 'ab_info_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/AntibodyFeatures.cc:84]: (performance) Variable 'ab_info_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/AntibodyInfo.cc:100]: (performance) Variable 'enum_manager_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/AntibodyInfo.cc:115]: (performance) Variable 'enum_manager_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/AntibodyInfo.cc:128]: (performance) Variable 'enum_manager_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/AntibodyInfo.cc:2004] -> [protocols/antibody/AntibodyInfo.cc:2282]: (style) The expression 'h2found == 0' is always true. [knownConditionTrueFalse]
[protocols/antibody/AntibodyInfo.cc:2004] -> [protocols/antibody/AntibodyInfo.cc:2285]: (style) The expression 'h2found == 0' is always true. [knownConditionTrueFalse]
[protocols/antibody/AntibodyInfo.cc:2006]: (style) The scope of the variable 'posl1_s' can be reduced. [variableScope]
[protocols/antibody/AntibodyInfo.cc:2006]: (style) The scope of the variable 'posl2_s' can be reduced. [variableScope]
[protocols/antibody/AntibodyInfo.cc:2006]: (style) Variable 'posl1_s' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/AntibodyInfo.cc:2006]: (style) Variable 'posl2_s' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/AntibodyInfo.cc:2006]: (style) Variable 'posl3_e' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/AntibodyInfo.cc:2006]: (style) Variable 'posl3_s' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/AntibodyInfo.cc:2007]: (style) The scope of the variable 'posh1_e' can be reduced. [variableScope]
[protocols/antibody/AntibodyInfo.cc:2007]: (style) The scope of the variable 'posh1_s' can be reduced. [variableScope]
[protocols/antibody/AntibodyInfo.cc:2007]: (style) The scope of the variable 'posh2_e' can be reduced. [variableScope]
[protocols/antibody/AntibodyInfo.cc:2007]: (style) The scope of the variable 'posh2_s' can be reduced. [variableScope]
[protocols/antibody/AntibodyInfo.cc:2007]: (style) The scope of the variable 'posh3_e' can be reduced. [variableScope]
[protocols/antibody/AntibodyInfo.cc:2007]: (style) Variable 'posh1_s' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/AntibodyInfo.cc:2007]: (style) Variable 'posh2_e' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/AntibodyInfo.cc:2007]: (style) Variable 'posh2_s' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/AntibodyInfo.cc:2009]: (style) Variable 'pos_fr1_e' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/AntibodyInfo.cc:2009]: (style) Variable 'pos_fr1_s' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/AntibodyInfo.cc:2009]: (style) Variable 'pos_fr2_e' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/AntibodyInfo.cc:2009]: (style) Variable 'pos_fr2_s' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/AntibodyInfo.cc:2010]: (style) Variable 'pos_fr3_e' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/AntibodyInfo.cc:2010]: (style) Variable 'pos_fr3_s' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/AntibodyInfo.cc:2010]: (style) Variable 'pos_fr4_e' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/AntibodyInfo.cc:2010]: (style) Variable 'pos_fr4_s' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/AntibodyInfo.cc:2011]: (style) Variable 'len_fr1' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/AntibodyInfo.cc:2011]: (style) Variable 'len_fr2' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/AntibodyInfo.cc:2011]: (style) Variable 'len_fr3' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/AntibodyInfo.cc:2011]: (style) Variable 'len_fr4' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/AntibodyInfo.cc:2104] -> [protocols/antibody/AntibodyInfo.cc:2117]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/antibody/AntibodyInfo.cc:2112]: (style) Variable 'seq_fr1' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/AntibodyInfo.cc:2126]: (style) Variable 'seq_fr2' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/AntibodyInfo.cc:2167]: (style) Variable 'seq_fr3' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/AntibodyInfo.cc:2168]: (style) Variable 'seq_fr4' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/AntibodyInfo.cc:2218]: (style) Variable 'seq_fr1' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/AntibodyInfo.cc:2272]: (style) Variable 'seq_fr2' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/AntibodyInfo.cc:2273]: (style) Variable 'seq_fr3' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/AntibodyInfo.cc:2274]: (style) Variable 'seq_fr4' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/AntibodyInfo.cc:533]: (style) The scope of the variable 'loop_start_in_pose' can be reduced. [variableScope]
[protocols/antibody/AntibodyInfo.cc:533]: (style) The scope of the variable 'loop_stop_in_pose' can be reduced. [variableScope]
[protocols/antibody/AntibodyInfo.cc:966]: (style) Condition '!is_H3' is always false [knownConditionTrueFalse]
[protocols/antibody/AntibodyModelerProtocol.cc:333]: (style) Variable 'start_pose_' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/AntibodyNumberingParser.cc:180]: (style) Parameter 'landmark_to_match' can be declared with const [constParameter]
[protocols/antibody/AntibodyNumberingParser.cc:331]: (performance) Variable 'resnum_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/AntibodyNumberingParser.cc:338]: (warning) Member variable 'PDBLandmark::numbering_scheme_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/AntibodyNumberingParser.cc:339]: (performance) Variable 'resnum_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/CDRsMinPackMin.cc:58]: (performance) Variable 'ab_info_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/CDRsMinPackMin.cc:66]: (performance) Variable 'ab_info_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/CloseOneCDRLoop.cc:130]: (style) Variable 'separation' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/CloseOneCDRLoop.cc:38]: (warning) Member variable 'CloseOneCDRLoop::benchmark_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/clusters/CDRClusterMatcher.cc:136] -> [protocols/antibody/clusters/CDRClusterMatcher.cc:139]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/antibody/clusters/CDRClusterMatcher.cc:207] -> [protocols/antibody/clusters/CDRClusterMatcher.cc:209]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/antibody/clusters/CDRClusterMatcher.cc:58]: (performance) Variable 'center_cluster_db_path_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/clusters/CDRClusterSet.cc:115]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/antibody/clusters/CDRClusterSet.cc:41]: (performance) Variable 'cluster_matcher_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/constraints/CDRDihedralConstraintMover.cc:261]: (warning) Logical disjunction always evaluates to true: cdr_ != 8 || cdr_ != 7. [incorrectLogicOperator]
[protocols/antibody/constraints/CDRDihedralConstraintMover.cc:69]: (warning) Member variable 'CDRDihedralConstraintMover::cdr_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/constraints/CDRDihedralConstraintMover.cc:69]: (warning) Member variable 'CDRDihedralConstraintMover::forced_cluster_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/constraints/CDRDihedralConstraintMover.cc:77]: (warning) Member variable 'CDRDihedralConstraintMover::cdr_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/constraints/CDRDihedralConstraintMover.cc:77]: (warning) Member variable 'CDRDihedralConstraintMover::forced_cluster_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/constraints/CDRDihedralConstraintMover.cc:85]: (warning) Member variable 'CDRDihedralConstraintMover::forced_cluster_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/constraints/ParatopeEpitopeSiteConstraintMover.cc:60]: (performance) Variable 'ab_info_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/constraints/ParatopeSiteConstraintMover.cc:56]: (performance) Variable 'ab_info_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/database/AntibodyDatabaseManager.cc:154]: (performance) Function parameter 'database_path' should be passed by const reference. [passedByValue]
[protocols/antibody/database/AntibodyDatabaseManager.cc:380] -> [protocols/antibody/database/AntibodyDatabaseManager.cc:667]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/antibody/database/AntibodyDatabaseManager.cc:537] -> [protocols/antibody/database/AntibodyDatabaseManager.cc:695]: (style) Local variable 'select_statement' shadows outer variable [shadowVariable]
[protocols/antibody/database/AntibodyDatabaseManager.hh:104]: (performance) Function parameter 'pdb' should be passed by const reference. [passedByValue]
[protocols/antibody/database/AntibodyDatabaseManager.hh:104]: (performance) Function parameter 'sequence' should be passed by const reference. [passedByValue]
[protocols/antibody/database/AntibodyDatabaseManager.hh:224]: (performance) Function parameter 'database_path' should be passed by const reference. [passedByValue]
[protocols/antibody/database/AntibodyDatabaseManager.hh:64]: (performance) Function parameter 'pdb' should be passed by const reference. [passedByValue]
[protocols/antibody/database/AntibodyDatabaseManager.hh:76]: (performance) Function parameter 'pdb' should be passed by const reference. [passedByValue]
[protocols/antibody/database/CDRSetOptions.cc:25]: (warning) Member variable 'CDRSetOptions::cdr_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/database/CDRSetOptionsParser.cc:55]: (performance) Variable 'ab_manager_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/database/CDRSetOptionsParser.cc:56]: (performance) Variable 'cluster_manager_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/design/AntibodyDesignMover.cc:1004]: (style) Variable 'graft_id' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/design/AntibodyDesignMover.cc:1142] -> [protocols/antibody/design/AntibodyDesignMover.cc:1153]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/antibody/design/AntibodyDesignMover.cc:1220]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/antibody/design/AntibodyDesignMover.cc:125]: (performance) Variable 'design_enum_manager_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/design/AntibodyDesignMover.cc:140]: (performance) Variable 'ab_info_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/design/AntibodyDesignMover.cc:1606]: (style) Variable 'ab_info' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/design/AntibodyDesignMover.cc:1751]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[protocols/antibody/design/AntibodyDesignMover.cc:545]: (performance) Function parameter 'instruction_file' should be passed by const reference. [passedByValue]
[protocols/antibody/design/AntibodyDesignMover.cc:883] -> [protocols/antibody/design/AntibodyDesignMover.cc:897]: (style) Local variable 'temp_pose' shadows outer variable [shadowVariable]
[protocols/antibody/design/AntibodyDesignMover.cc:883] -> [protocols/antibody/design/AntibodyDesignMover.cc:905]: (style) Local variable 'temp_pose' shadows outer variable [shadowVariable]
[protocols/antibody/design/AntibodyDesignMover.hh:365]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[protocols/antibody/design/AntibodySeqDesignTFCreator.cc:61]: (performance) Variable 'stem_size_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/design/CDRGraftDesignOptions.cc:144]: (performance) Variable 'ab_manager_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/design/CDRGraftDesignOptions.cc:50]: (warning) Member variable 'CDRGraftDesignOptions::cdr_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/design/CDRSeqDesignOptions.cc:132]: (performance) Variable 'ab_manager_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/design/CDRSeqDesignOptions.cc:133]: (performance) Variable 'design_enum_manager_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/design/CDRSeqDesignOptions.cc:321]: (style) Same expression on both sides of '||'. [duplicateExpression]
[protocols/antibody/design/CDRSeqDesignOptions.cc:52]: (warning) Member variable 'CDRSeqDesignOptions::cdr_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/design/CDRSeqDesignOptions.cc:52]: (warning) Member variable 'CDRSeqDesignOptions::design_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/design/CDRSeqDesignOptions.cc:52]: (warning) Member variable 'CDRSeqDesignOptions::design_strategy_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/design/CDRSeqDesignOptions.cc:52]: (warning) Member variable 'CDRSeqDesignOptions::fallback_strategy_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/design/GeneralAntibodyModeler.cc:248]: (performance) Function parameter 'ab_dock_chains' should be passed by const reference. [passedByValue]
[protocols/antibody/design/util.cc:373]: (error) When i==ab_dock_chains.size(), ab_dock_chains[i] is out of bounds. [stlOutOfBounds]
[protocols/antibody/GraftedStemOptimizer.cc:51]: (performance) Variable 'ab_info_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/grafting/antibody_sequence.hh:117]: (performance) Function parameter 'heavy_' should be passed by const reference. [passedByValue]
[protocols/antibody/grafting/antibody_sequence.hh:117]: (performance) Function parameter 'light_' should be passed by const reference. [passedByValue]
[protocols/antibody/grafting/antibody_sequence.hh:90]: (performance) Function parameter 'sequence_' should be passed by const reference. [passedByValue]
[protocols/antibody/grafting/grafter.cc:109]: (style) Variable 'an' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/grafting/grafter.cc:216]: (style) Variable 'an' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/grafting/json_based_cdr_detection.cc:176]: (style) Variable 'light_first' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/grafting/json_based_cdr_detection.cc:53]: (performance) Function parameter 'json_filename' should be passed by const reference. [passedByValue]
[protocols/antibody/grafting/json_based_cdr_detection.cc:74]: (style) Variable 'heavy_first' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/grafting/json_based_cdr_detection.hh:47]: (performance) Function parameter 'json_filename' should be passed by const reference. [passedByValue]
[protocols/antibody/grafting/scs_blast.cc:271]: (style) Variable 'fr' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/grafting/scs_blast.cc:298]: (style) Variable 'antibody_info_lines' can be declared with const [constVariable]
[protocols/antibody/grafting/scs_blast.cc:456]: (style) Variable 'an' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/grafting/scs_functor.cc:463]: (style) Variable 'query_fr' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/grafting/scs_functor.cc:597]: (performance) Function parameter 'pdb_name' should be passed by const reference. [passedByValue]
[protocols/antibody/grafting/scs_functor.cc:798] -> [protocols/antibody/grafting/scs_functor.cc:804]: (style) Local variable 'p' shadows outer variable [shadowVariable]
[protocols/antibody/H3CterInsert.cc:47]: (warning) Member variable 'H3CterInsert::benchmark_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/H3PerturbCCD.cc:69]: (warning) Member variable 'H3PerturbCCD::current_loop_is_H3_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/H3PerturbCCD.cc:69]: (warning) Member variable 'H3PerturbCCD::H3_filter_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/H3PerturbCCD.cc:69]: (warning) Member variable 'H3PerturbCCD::is_camelid_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/H3PerturbCCD.hh:69]: (style) Parameter 'input_loop' can be declared with const [constParameter]
[protocols/antibody/H3RefineCCD.cc:174]: (style) Parameter 'start_pose' can be declared with const [constParameter]
[protocols/antibody/H3RefineCCD.cc:70]: (warning) Member variable 'H3RefineCCD::benchmark_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/H3RefineCCD.cc:70]: (warning) Member variable 'H3RefineCCD::flank_relax_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/H3RefineCCD.cc:70]: (warning) Member variable 'H3RefineCCD::H3_filter_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/H3RefineCCD.cc:70]: (warning) Member variable 'H3RefineCCD::include_neighbors_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/H3RefineCCD.cc:70]: (warning) Member variable 'H3RefineCCD::is_camelid_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/H3RefineCCD.cc:70]: (warning) Member variable 'H3RefineCCD::loop_name_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/H3RefineCCD.cc:70]: (warning) Member variable 'H3RefineCCD::refine_input_loop_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/H3RefineCCD.cc:70]: (warning) Member variable 'H3RefineCCD::user_defined_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/H3RefineCCD.cc:74]: (performance) Variable 'ab_info_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/H3RefineCCD.cc:86]: (performance) Variable 'ab_info_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/H3RefineCCD.cc:88]: (performance) Variable 'highres_scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/H3RefineCCD.cc:93]: (warning) Member variable 'H3RefineCCD::user_defined_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/H3RefineCCD.cc:94]: (performance) Variable 'ab_info_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody_legacy/AntibodyClass.cc:185]: (style) Parameter 'pose_in' can be declared with const [constParameter]
[protocols/antibody_legacy/AntibodyClass.cc:199]: (style) Parameter 'pose_in' can be declared with const [constParameter]
[protocols/antibody_legacy/AntibodyClass.cc:382]: (style) Condition '!is_H3' is always false [knownConditionTrueFalse]
[protocols/antibody_legacy/AntibodyClass.cc:42]: (performance) Variable 'current_start' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody_legacy/AntibodyClass.cc:43]: (performance) Variable 'current_end' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody_legacy/AntibodyClass.cc:60]: (style) Parameter 'pose_in' can be declared with const [constParameter]
[protocols/antibody_legacy/AntibodyClass.cc:62]: (performance) Variable 'Fv' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody_legacy/AntibodyClass.cc:74]: (style) Parameter 'pose_in' can be declared with const [constParameter]
[protocols/antibody_legacy/AntibodyClass.cc:76]: (performance) Variable 'Fv' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody_legacy/AntibodyClass.cc:88]: (warning) Member variable 'Antibody::extended_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody_legacy/AntibodyClass.cc:88]: (warning) Member variable 'Antibody::kinked_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody_legacy/AntibodyClass.cc:89]: (style) Parameter 'pose_in' can be declared with const [constParameter]
[protocols/antibody_legacy/AntibodyClass.cc:90]: (performance) Function parameter 'cdr_name' should be passed by const reference. [passedByValue]
[protocols/antibody_legacy/AntibodyClass.cc:92]: (performance) Variable 'Fv' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody_legacy/AntibodyModeler.cc:158]: (style) Parameter 'pose_in' can be declared with const [constParameter]
[protocols/antibody_legacy/AntibodyModeler.cc:984]: (performance) Function parameter 'cdr_type' should be passed by const reference. [passedByValue]
[protocols/antibody_legacy/CDRH3Modeler.cc:1275] -> [protocols/antibody_legacy/CDRH3Modeler.cc:1318]: (style) Local variable 'pack_rottrial' shadows outer variable [shadowVariable]
[protocols/antibody_legacy/CDRH3Modeler.cc:170]: (style) Variable 'start_pose' is assigned a value that is never used. [unreadVariable]
[protocols/antibody_legacy/CDRH3Modeler.cc:299]: (style) Variable 'hfr_template' is assigned a value that is never used. [unreadVariable]
[protocols/antibody_legacy/CDRH3Modeler.cc:614]: (style) Variable 'start_pose' is assigned a value that is never used. [unreadVariable]
[protocols/antibody_legacy/CDRH3Modeler.cc:652]: (style) Parameter 'pose_in' can be declared with const [constParameter]
[protocols/antibody_legacy/GraftMover.cc:375]: (style) Variable 'antibody' is assigned a value that is never used. [unreadVariable]
[protocols/antibody_legacy/GraftMover.cc:527]: (style) Variable 'nter' is assigned a value that is never used. [unreadVariable]
[protocols/antibody_legacy/GraftMover.cc:538]: (style) Variable 'separation' is assigned a value that is never used. [unreadVariable]
[protocols/antibody_legacy/GraftMover.cc:76]: (warning) Member variable 'GraftMover::benchmark_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody_legacy/GraftMover.cc:926] -> [protocols/antibody_legacy/GraftMover.cc:959]: (style) Local variable 'pack_rottrial' shadows outer variable [shadowVariable]
[protocols/antibody_legacy/GraftMover.cc:97]: (style) Variable 'antibody_in' is assigned a value that is never used. [unreadVariable]
[protocols/antibody_legacy/LHRepulsiveRampLegacy.cc:103]: (performance) Function parameter 'loops_in' should be passed by const reference. [passedByValue]
[protocols/antibody_legacy/LHRepulsiveRampLegacy.cc:107]: (performance) Variable 'dock_scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody_legacy/LHRepulsiveRampLegacy.cc:117]: (performance) Variable 'dock_scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody_legacy/LHRepulsiveRampLegacy.cc:133]: (performance) Function parameter 'loops_in' should be passed by const reference. [passedByValue]
[protocols/antibody_legacy/LHRepulsiveRampLegacy.cc:78]: (warning) Member variable 'LHRepulsiveRampLegacy::benchmark_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody_legacy/LHRepulsiveRampLegacy.cc:78]: (warning) Member variable 'LHRepulsiveRampLegacy::is_camelid_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody_legacy/LHRepulsiveRampLegacy.cc:78]: (warning) Member variable 'LHRepulsiveRampLegacy::user_defined_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody_legacy/LHRepulsiveRampLegacy.cc:83]: (performance) Function parameter 'loops_in' should be passed by const reference. [passedByValue]
[protocols/antibody_legacy/LHSnugFitLegacy.cc:78]: (warning) Member variable 'LHSnugFitLegacy::benchmark_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody_legacy/LHSnugFitLegacy.cc:78]: (warning) Member variable 'LHSnugFitLegacy::is_camelid_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody_legacy/LHSnugFitLegacy.cc:78]: (warning) Member variable 'LHSnugFitLegacy::user_defined_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody_legacy/LHSnugFitLegacy.cc:83]: (warning) Member variable 'LHSnugFitLegacy::benchmark_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody_legacy/LHSnugFitLegacy.cc:89]: (warning) Member variable 'LHSnugFitLegacy::benchmark_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody_legacy/LHSnugFitLegacy.cc:94]: (warning) Member variable 'LHSnugFitLegacy::benchmark_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody_legacy/Ubiquitin_E2C_Modeler.cc:1743]: (style) Parameter 'pose_in' can be declared with const [constParameter]
[protocols/antibody_legacy/Ubiquitin_E2C_Modeler.cc:2020]: (style) Condition 'passed_filter' is always true [knownConditionTrueFalse]
[protocols/antibody_legacy/Ubiquitin_E2C_Modeler.cc:3106]: (style) Condition 'passed_filter' is always true [knownConditionTrueFalse]
[protocols/antibody_legacy/Ubiquitin_E2C_Modeler.cc:3173]: (style) Condition 'passed_filter' is always true [knownConditionTrueFalse]
[protocols/antibody/LHRepulsiveRamp.cc:144] -> [protocols/antibody/LHRepulsiveRamp.cc:147]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/antibody/LHRepulsiveRamp.cc:39]: (warning) Member variable 'LHRepulsiveRamp::benchmark_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/LHRepulsiveRamp.cc:39]: (warning) Member variable 'LHRepulsiveRamp::rt_min_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/LHRepulsiveRamp.cc:39]: (warning) Member variable 'LHRepulsiveRamp::sc_min_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/LHRepulsiveRamp.cc:39]: (warning) Member variable 'LHRepulsiveRamp::user_defined_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/metrics.hh:82] -> [protocols/antibody/AntibodyFeatures.cc:279]: (style) Local variable 'paratope_charge' shadows outer function [shadowFunction]
[protocols/antibody/RefineBetaBarrel.cc:48]: (warning) Member variable 'RefineBetaBarrel::repulsive_ramp_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/RefineBetaBarrel.cc:48]: (warning) Member variable 'RefineBetaBarrel::rt_min_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/RefineBetaBarrel.cc:48]: (warning) Member variable 'RefineBetaBarrel::sc_min_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/RefineBetaBarrel.cc:48]: (warning) Member variable 'RefineBetaBarrel::user_defined_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/RefineBetaBarrel.cc:54]: (performance) Variable 'ab_info_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/RefineBetaBarrel.cc:63]: (performance) Variable 'ab_info_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/RefineBetaBarrel.cc:64]: (performance) Variable 'dock_scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/antibody/residue_selector/AntibodyRegionSelector.cc:124] -> [protocols/antibody/residue_selector/AntibodyRegionSelector.cc:133]: (style) Local variable 'manager' shadows outer variable [shadowVariable]
[protocols/antibody/residue_selector/CDRResidueSelector.cc:170] -> [protocols/antibody/residue_selector/CDRResidueSelector.cc:178]: (style) Local variable 'manager' shadows outer variable [shadowVariable]
[protocols/antibody/residue_selector/CDRResidueSelector.cc:170]: (style) Variable 'manager' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/snugdock/SnugDockProtocol.cc:509] -> [protocols/antibody/snugdock/SnugDockProtocol.cc:519]: (style) Local variable 'single_chain' shadows outer variable [shadowVariable]
[protocols/antibody/snugdock/SnugDockProtocol.cc:509] -> [protocols/antibody/snugdock/SnugDockProtocol.cc:534]: (style) Local variable 'single_chain' shadows outer variable [shadowVariable]
[protocols/antibody/snugdock/SnugDockProtocol.cc:606] -> [protocols/antibody/snugdock/SnugDockProtocol.cc:635]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/antibody/task_operations/AddCDRProfilesOperation.cc:159] -> [protocols/antibody/task_operations/AddCDRProfilesOperation.cc:173]: (style) Local variable 'manager' shadows outer variable [shadowVariable]
[protocols/antibody/task_operations/AddCDRProfilesOperation.cc:84] -> [protocols/antibody/task_operations/AddCDRProfilesOperation.cc:94]: (style) Variable 'pre_loaded_data_' is reassigned a value before the old one has been used. [redundantAssignment]
[protocols/antibody/task_operations/DisableAntibodyRegionOperation.cc:94] -> [protocols/antibody/task_operations/DisableAntibodyRegionOperation.cc:104]: (style) Local variable 'manager' shadows outer variable [shadowVariable]
[protocols/antibody/task_operations/DisableCDRsOperation.cc:143] -> [protocols/antibody/task_operations/DisableCDRsOperation.cc:155]: (style) Local variable 'manager' shadows outer variable [shadowVariable]
[protocols/antibody/task_operations/DisableCDRsOperation.cc:143]: (style) Variable 'manager' is assigned a value that is never used. [unreadVariable]
[protocols/antibody/util.cc:117]: (style) Parameter 'attlist' can be declared with const [constParameter]
[protocols/antibody/util.cc:274]: (style) Parameter 'pose_in' can be declared with const [constParameter]
[protocols/antibody/util.cc:563]: (style) Parameter 'input_loop' can be declared with const [constParameter]
[protocols/antibody/util.cc:628]: (style) Condition 'H3_base_only' is always false [knownConditionTrueFalse]
[protocols/backbone_moves/local_backbone_mover/FreePeptide.cc:38]: (performance) Variable 'seqpos_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/backbone_moves/local_backbone_mover/LocalBackboneMover.cc:59]: (performance) Variable 'gap_closer_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/backrub/util.cc:118]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/backrub/util.cc:119]: (style) Parameter 'packertask' can be declared with const [constParameter]
[protocols/calc_taskop_filters/OperatorFilter.cc:324]: (style) Parameter 'attlist' can be declared with const [constParameter]
[protocols/calc_taskop_filters/OperatorFilter.cc:44]: (warning) Member variable 'Operator::multi_relative_' is not initialized in the constructor. [uninitMemberVar]
[protocols/calc_taskop_filters/SigmoidFilter.cc:165]: (style) Parameter 'attlist' can be declared with const [constParameter]
[protocols/calc_taskop_movers/CreateSequenceMotifMover.cc:127]: (performance) Function parameter 'motif' should be passed by const reference. [passedByValue]
[protocols/calc_taskop_movers/DesignRepackMover.hh:110] -> [protocols/protein_interface_design/movers/BackrubDDMover.hh:77]: (warning) The class 'BackrubDDMover' defines member variable with name 'interface_distance_cutoff_' also defined in its parent class 'DesignRepackMover'. [duplInheritedMember]
[protocols/calc_taskop_movers/DesignRepackMover.hh:110] -> [protocols/protein_interface_design/movers/BuildAlaPose.hh:58]: (warning) The class 'BuildAlaPose' defines member variable with name 'interface_distance_cutoff_' also defined in its parent class 'DesignRepackMover'. [duplInheritedMember]
[protocols/calc_taskop_movers/DesignRepackMover.hh:110] -> [protocols/protein_interface_design/movers/DesignMinimizeHbonds.hh:73]: (warning) The class 'DesignMinimizeHbonds' defines member variable with name 'interface_distance_cutoff_' also defined in its parent class 'DesignRepackMover'. [duplInheritedMember]
[protocols/canonical_sampling/AsyncMPITemperingBase.cc:64] -> [protocols/canonical_sampling/AsyncMPITemperingBase.cc:445]: (style) The expression 'mpi_size_XCHANGE_READY == 2' is always true. [knownConditionTrueFalse]
[protocols/canonical_sampling/AsyncMPITemperingBase.cc:65] -> [protocols/canonical_sampling/AsyncMPITemperingBase.cc:270]: (style) The expression 'mpi_size_SWAP_INVITE == 1' is always true. [knownConditionTrueFalse]
[protocols/canonical_sampling/CanonicalSamplingMover.cc:168]: (warning) Member variable 'CanonicalSamplingMover::MPI_bcast_' is not initialized in the constructor. [uninitMemberVar]
[protocols/canonical_sampling/CanonicalSamplingMover.cc:188]: (warning) Member variable 'CanonicalSamplingMover::MPI_bcast_' is not initialized in the constructor. [uninitMemberVar]
[protocols/canonical_sampling/CanonicalSamplingMover.cc:259]: (style) Parameter 'loop' can be declared with const [constParameter]
[protocols/canonical_sampling/CanonicalSamplingMover.cc:259]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/canonical_sampling/CanonicalSamplingMover.cc:652]: (style) Condition 'constrain_structure' is always false [knownConditionTrueFalse]
[protocols/canonical_sampling/CanonicalSamplingMover.cc:686]: (style) Condition 'constrain_structure' is always false [knownConditionTrueFalse]
[protocols/canonical_sampling/HamiltonianExchange.cc:433]: (warning) Member variable 'PatchOperation::score_type_' is not initialized in the constructor. [uninitMemberVar]
[protocols/canonical_sampling/mc_convergence_checks/HierarchicalLevel.cc:279]: (style) Condition 'load_if_missing' is always false [knownConditionTrueFalse]
[protocols/canonical_sampling/mc_convergence_checks/HierarchicalLevel.cc:742]: (style) Variable 'matching_pool_ptr' is assigned a value that is never used. [unreadVariable]
[protocols/canonical_sampling/mc_convergence_checks/HierarchicalLevel.cc:755]: (warning) Return value of function round() is not used. [ignoredReturnValue]
[protocols/canonical_sampling/mc_convergence_checks/HPool.cc:156]: (style) Parameter 'conf1' can be declared with const [constParameter]
[protocols/canonical_sampling/mc_convergence_checks/HPool.cc:204]: (style) Parameter 'coord' can be declared with const [constParameter]
[protocols/canonical_sampling/mc_convergence_checks/HPool.cc:204]: (style) Parameter 'tag' can be declared with const [constParameter]
[protocols/canonical_sampling/mc_convergence_checks/HPool.cc:241]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/canonical_sampling/mc_convergence_checks/Pool_ConvergenceCheck.cc:137]: (performance) Function parameter 'new_tag' should be passed by const reference. [passedByValue]
[protocols/canonical_sampling/mc_convergence_checks/Pool_ConvergenceCheck.hh:66]: (performance) Function parameter 'silent_file' should be passed by const reference. [passedByValue]
[protocols/canonical_sampling/mc_convergence_checks/pool_util.cc:131]: (style) Parameter 'coords' can be declared with const [constParameter]
[protocols/canonical_sampling/MetropolisHastingsMover.cc:873]: (performance) Function parameter 'tag_name' should be passed by const reference. [passedByValue]
[protocols/canonical_sampling/MetropolisHastingsMover.cc:90]: (warning) Member variable 'MetropolisHastingsMover::last_accepted_' is not initialized in the constructor. [uninitMemberVar]
[protocols/canonical_sampling/MetropolisHastingsMover.cc:90]: (warning) Member variable 'MetropolisHastingsMover::output_name_from_job_distributor_' is not initialized in the constructor. [uninitMemberVar]
[protocols/canonical_sampling/ParallelTempering.cc:104]: (warning) Member variable 'ParallelTempering::rank_' is not initialized in the constructor. [uninitMemberVar]
[protocols/canonical_sampling/TemperingBase.cc:153]: (style) Parameter 'attlist' can be declared with const [constParameter]
[protocols/canonical_sampling/TemperingBase.cc:95]: (warning) Member variable 'TemperingBase::stats_line_output_' is not initialized in the constructor. [uninitMemberVar]
[protocols/canonical_sampling/TemperingBase.cc:95]: (warning) Member variable 'TemperingBase::stats_silent_output_' is not initialized in the constructor. [uninitMemberVar]
[protocols/canonical_sampling/TrajectoryRecorder.cc:116]: (style) Parameter 'attlist' can be declared with const [constParameter]
[protocols/carbohydrates/CreateGlycanSequonMover.cc:57]: (performance) Variable 'sequons_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/carbohydrates/GlycanSampler.cc:372]: (style) Variable 'operate_on_virt_subset' is assigned a value that is never used. [unreadVariable]
[protocols/carbohydrates/GlycanSampler.cc:751]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/carbohydrates/GlycanSampler.cc:898]: (style) Variable 'energy_pre_move' is assigned a value that is never used. [unreadVariable]
[protocols/carbohydrates/GlycanTreeMinMover.cc:88]: (performance) Variable 'selector_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cartesian/md.cc:1129]: (style) Condition 'gammat>0.05' is always false [knownConditionTrueFalse]
[protocols/cartesian/md.cc:1212]: (style) Parameter 'current_energy' can be declared with const [constParameter]
[protocols/cartesian/md.cc:64]: (style) Parameter 'inputpose' can be declared with const [constParameter]
[protocols/checkpoint/CheckPointer.cc:178]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/checkpoint/CheckPointer.cc:363]: (style) Variable 'residue_set' is assigned a value that is never used. [unreadVariable]
[protocols/checkpoint/CheckPointer.cc:364]: (style) Variable 'residue_set' is assigned a value that is never used. [unreadVariable]
[protocols/chemically_conjugated_docking/UBQ_GTPaseMover.cc:148]: (performance) Variable 'fullatom_scorefunction_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cluster/calibur/Clustering.cc:1315] -> [protocols/cluster/calibur/Clustering.cc:1322]: (style) Local variable 'd' shadows outer variable [shadowVariable]
[protocols/cluster/calibur/Clustering.cc:1394]: (style) Parameter 'adj' can be declared with const [constParameter]
[protocols/cluster/calibur/Clustering.cc:141]: (performance) Variable 'bestClusMargin' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cluster/calibur/Clustering.cc:471] -> [protocols/cluster/calibur/Clustering.cc:500]: (style) Local variable 'start' shadows outer variable [shadowVariable]
[protocols/cluster/calibur/Clustering.cc:473] -> [protocols/cluster/calibur/Clustering.cc:519]: (style) Local variable 'elapsed' shadows outer variable [shadowVariable]
[protocols/cluster/calibur/PreloadedPDB.cc:238] -> [protocols/cluster/calibur/PreloadedPDB.cc:249]: (style) Local variable 'pdb' shadows outer variable [shadowVariable]
[protocols/cluster/calibur/PreloadedPDB.cc:57] -> [protocols/cluster/calibur/PreloadedPDB.cc:151]: (style) Local variable 'filename' shadows outer argument [shadowArgument]
[protocols/cluster/calibur/rmsd.cc:525]: (style) Parameter 'coords' can be declared with const [constParameter]
[protocols/cluster/cluster.cc:127]: (performance) Variable 'filter_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cluster/cluster.cc:694]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[protocols/cluster/cluster.cc:781]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[protocols/cluster/cluster.cc:845]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[protocols/cluster/cluster.cc:883] -> [protocols/cluster/cluster.cc:895]: (style) Condition 'listsize==0' is always false [knownConditionTrueFalse]
[protocols/cluster/cluster.hh:122]: (performance) Variable 'minimum_width_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cluster/cluster.hh:268]: (performance) Function parameter 'loop_def' should be passed by const reference. [passedByValue]
[protocols/comparative_modeling/Align_RmsdEvaluator.cc:48]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[protocols/comparative_modeling/Align_RotamerEvaluator.cc:42]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[protocols/comparative_modeling/LoopRelaxMover.cc:163]: (warning) Member variable 'LoopRelaxMover::compute_rmsd_' is not initialized in the constructor. [uninitMemberVar]
[protocols/comparative_modeling/LoopRelaxMover.cc:184]: (warning) Member variable 'LoopRelaxMover::compute_rmsd_' is not initialized in the constructor. [uninitMemberVar]
[protocols/comparative_modeling/LoopRelaxMover.cc:202]: (warning) Member variable 'LoopRelaxMover::compute_rmsd_' is not initialized in the constructor. [uninitMemberVar]
[protocols/comparative_modeling/LoopRelaxMover.cc:350] -> [protocols/comparative_modeling/LoopRelaxMover.cc:351]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/comparative_modeling/LoopRelaxMover.cc:500] -> [protocols/comparative_modeling/LoopRelaxMover.cc:1067]: (style) Local variable 'starttime' shadows outer variable [shadowVariable]
[protocols/comparative_modeling/LoopRelaxMover.cc:997]: (style) Variable 'f_orig' is assigned a value that is never used. [unreadVariable]
[protocols/comparative_modeling/LoopRelaxMover.hh:113]: (performance) Function parameter 'val' should be passed by const reference. [passedByValue]
[protocols/comparative_modeling/LoopRelaxMover.hh:117]: (performance) Function parameter 'val' should be passed by const reference. [passedByValue]
[protocols/comparative_modeling/LoopRelaxMover.hh:121]: (performance) Function parameter 'val' should be passed by const reference. [passedByValue]
[protocols/comparative_modeling/LoopRelaxMover.hh:125]: (performance) Function parameter 'val' should be passed by const reference. [passedByValue]
[protocols/comparative_modeling/ThreadingMover.cc:146]: (performance) Function parameter 'new_align' should be passed by const reference. [passedByValue]
[protocols/comparative_modeling/ThreadingMover.cc:150]: (performance) Function parameter 'template_pose' should be passed by const reference. [passedByValue]
[protocols/comparative_modeling/ThreadingMover.cc:219] -> [protocols/comparative_modeling/ThreadingMover.cc:272]: (style) Local variable 'template_id' shadows outer variable [shadowVariable]
[protocols/comparative_modeling/ThreadingMover.cc:226] -> [protocols/comparative_modeling/ThreadingMover.cc:367]: (style) Local variable 'missing' shadows outer variable [shadowVariable]
[protocols/comparative_modeling/util.cc:685] -> [protocols/comparative_modeling/util.cc:694]: (style) Local variable 'ai' shadows outer variable [shadowVariable]
[protocols/constraint_filters/ConstraintScoreCutoffFilter.cc:59]: (warning) Member variable 'ConstraintScoreCutoffFilter::score_type_' is not initialized in the constructor. [uninitMemberVar]
[protocols/constraint_filters/ConstraintScoreCutoffFilter.cc:64]: (warning) Member variable 'ConstraintScoreCutoffFilter::score_type_' is not initialized in the constructor. [uninitMemberVar]
[protocols/constraint_filters/SavePoseConstraintToFileFilter.cc:42]: (warning) Member variable 'SavePoseConstraintToFileFilter::overwrite_' is not initialized in the constructor. [uninitMemberVar]
[protocols/constraint_generator/ConstraintsManager.cc:116]: (style) Variable 'cst_it' is assigned a value that is never used. [unreadVariable]
[protocols/constraint_generator/ConstraintsManager.cc:48]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/constraint_generator/ConstraintsManager.cc:64]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/constraint_generator/DihedralConstraintGenerator.cc:121]: (style) Variable 'current_torsion_angle' is assigned a value that is never used. [unreadVariable]
[protocols/constraint_generator/DihedralConstraintGenerator.cc:71]: (warning) Member variable 'DihedralConstraintGenerator::torsion_' is not initialized in the constructor. [uninitMemberVar]
[protocols/constraint_generator/MetalContactsConstraintGenerator.cc:751]: (performance) Function parameter 'setting' should be passed by const reference. [passedByValue]
[protocols/constraint_generator/MetalContactsConstraintGenerator.cc:766]: (performance) Function parameter 'setting' should be passed by const reference. [passedByValue]
[protocols/constraint_generator/MetalContactsConstraintGenerator.cc:781]: (performance) Function parameter 'setting' should be passed by const reference. [passedByValue]
[protocols/constraint_generator/MetalContactsConstraintGenerator.cc:786]: (performance) Function parameter 'setting' should be passed by const reference. [passedByValue]
[protocols/constraint_generator/MetalContactsConstraintGenerator.cc:791]: (performance) Function parameter 'setting' should be passed by const reference. [passedByValue]
[protocols/constraint_generator/MetalContactsConstraintGenerator.cc:837]: (style) The scope of the variable 'found' can be reduced. [variableScope]
[protocols/constraint_generator/RemoveConstraints.cc:67]: (style) Variable 'generators_str' is assigned a value that is never used. [unreadVariable]
[protocols/constraint_generator/ResidueTypeConstraintGenerator.cc:112]: (performance) Function parameter 'name3' should be passed by const reference. [passedByValue]
[protocols/constraint_generator/util.cc:140]: (style) Parameter 'attributes' can be declared with const [constParameter]
[protocols/constraints_additional/MaxSeqSepConstraintSet.cc:94]: (performance) Variable 'shortest_path_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/contact_map/ContactMap.hh:42]: (style) The class 'ContactMap' does not have a constructor although it has private member variables. [noConstructor]
[protocols/contact_map/ContactMap.hh:70]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[protocols/cryst/cryst_rms.cc:319]: (style) Variable 'sumdist' is assigned a value that is never used. [unreadVariable]
[protocols/cryst/cryst_rms.cc:329]: (style) Variable 'sumdist' is assigned a value that is never used. [unreadVariable]
[protocols/cryst/refinable_lattice.cc:129]: (style) Condition 'MWLOOKUP.size()==0' is always true [knownConditionTrueFalse]
[protocols/cryst/refinable_lattice.cc:312]: (style) Variable 'RMS' is assigned a value that is never used. [unreadVariable]
[protocols/cryst/refinable_lattice.cc:393]: (warning) Member variable 'DockLatticeMover::final_min_' is not initialized in the constructor. [uninitMemberVar]
[protocols/cryst/refinable_lattice.cc:393]: (warning) Member variable 'DockLatticeMover::min_' is not initialized in the constructor. [uninitMemberVar]
[protocols/cryst/refinable_lattice.cc:393]: (warning) Member variable 'DockLatticeMover::min_lattice_' is not initialized in the constructor. [uninitMemberVar]
[protocols/cryst/refinable_lattice.cc:393]: (warning) Member variable 'DockLatticeMover::pack_' is not initialized in the constructor. [uninitMemberVar]
[protocols/cryst/refinable_lattice.cc:393]: (warning) Member variable 'DockLatticeMover::perturb_chi_' is not initialized in the constructor. [uninitMemberVar]
[protocols/cryst/refinable_lattice.cc:393]: (warning) Member variable 'DockLatticeMover::randomize_' is not initialized in the constructor. [uninitMemberVar]
[protocols/cryst/refinable_lattice.cc:393]: (warning) Member variable 'DockLatticeMover::recover_low_' is not initialized in the constructor. [uninitMemberVar]
[protocols/cryst/refinable_lattice.cc:393]: (warning) Member variable 'DockLatticeMover::verbose_' is not initialized in the constructor. [uninitMemberVar]
[protocols/cryst/refinable_lattice.cc:394]: (performance) Variable 'sf_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cryst/refinable_lattice.cc:398]: (performance) Variable 'sf_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cryst/refinable_lattice.cc:459] -> [protocols/cryst/refinable_lattice.cc:459]: (style) Variable 'sg_picked[8]' is reassigned a value before the old one has been used. [redundantAssignment]
[protocols/cryst/refinable_lattice.cc:904]: (style) Variable 'RMS' is assigned a value that is never used. [unreadVariable]
[protocols/cryst/refinable_lattice.hh:249]: (performance) Variable 'contact_dist_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cryst/spacegroup.cc:100]: (performance) Function parameter 'name_in' should be passed by const reference. [passedByValue]
[protocols/cryst/spacegroup.cc:101]: (performance) Variable 'c_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cryst/spacegroup.cc:102]: (performance) Variable 'alpha_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cryst/spacegroup.cc:102]: (performance) Variable 'beta_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cryst/spacegroup.cc:102]: (performance) Variable 'gamma_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cryst/spacegroup.cc:103]: (performance) Variable 'V_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cryst/spacegroup.cc:104]: (performance) Variable 'ncopies_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cryst/spacegroup.cc:109]: (performance) Function parameter 'name_in' should be passed by const reference. [passedByValue]
[protocols/cryst/spacegroup.cc:92]: (performance) Variable 'name_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cryst/spacegroup.cc:94]: (performance) Variable 'a_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cryst/spacegroup.cc:94]: (performance) Variable 'b_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cryst/spacegroup.cc:94]: (performance) Variable 'c_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cryst/spacegroup.cc:95]: (performance) Variable 'alpha_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cryst/spacegroup.cc:95]: (performance) Variable 'beta_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cryst/spacegroup.cc:95]: (performance) Variable 'gamma_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cryst/spacegroup.cc:96]: (performance) Variable 'V_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cryst/spacegroup.cc:97]: (performance) Variable 'ncopies_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cryst/wallpaper.cc:100]: (performance) Variable 'ncopies_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cryst/wallpaper.cc:105]: (performance) Function parameter 'name_in' should be passed by const reference. [passedByValue]
[protocols/cryst/wallpaper.cc:88]: (performance) Variable 'name_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cryst/wallpaper.cc:90]: (performance) Variable 'a_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cryst/wallpaper.cc:90]: (performance) Variable 'b_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cryst/wallpaper.cc:91]: (performance) Variable 'alpha_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cryst/wallpaper.cc:92]: (performance) Variable 'V_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cryst/wallpaper.cc:93]: (performance) Variable 'ncopies_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cryst/wallpaper.cc:96]: (performance) Function parameter 'name_in' should be passed by const reference. [passedByValue]
[protocols/cryst/wallpaper.cc:97]: (performance) Variable 'b_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cryst/wallpaper.cc:98]: (performance) Variable 'alpha_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cryst/wallpaper.cc:99]: (performance) Variable 'V_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cutoutdomain/CutOutDomain.hh:43]: (performance) Function parameter 'suf' should be passed by const reference. [passedByValue]
[protocols/cutoutdomain/CutOutDomain.hh:44]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[protocols/cyclic_peptide/FlipChiralityMover.cc:77]: (performance) Variable 'center_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cyclic_peptide/FlipChiralityMover.cc:78]: (performance) Variable 'normal_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/cyclic_peptide_predict/SimpleCycpepPredictApplication.cc:606] -> [protocols/cyclic_peptide_predict/SimpleCycpepPredictApplication.cc:609]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/cyclic_peptide/TryDisulfPermutations.cc:284] -> [protocols/cyclic_peptide/TryDisulfPermutations.cc:294]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/ddg/CartesianddG.cc:273]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[protocols/ddg/CartesianddG.cc:274]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/ddg/CartesianddG.cc:323]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[protocols/ddg/CartesianddG.cc:362]: (style) Variable 'work_pose' is assigned a value that is never used. [unreadVariable]
[protocols/ddg/CartesianddG.cc:367]: (style) Variable 'work_pose' is assigned a value that is never used. [unreadVariable]
[protocols/ddg/CartesianddG.cc:571]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/ddg/CartesianddG.cc:716]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[protocols/ddg/CartesianddG.cc:721]: (style) Unused variable: before_jump_done_list [unusedVariable]
[protocols/ddg/CartesianddG.cc:722]: (style) Unused variable: after_jump_done_list [unusedVariable]
[protocols/ddg/CartesianddG.cc:748]: (style) The scope of the variable 'pos' can be reduced. [variableScope]
[protocols/ddg/CartesianddG.cc:773]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/ddg/CartesianddG.cc:774]: (performance) Function parameter 'mutations' should be passed by const reference. [passedByValue]
[protocols/ddg/CartesianddG.cc:815]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[protocols/ddg/CartesianddG.cc:910] -> [protocols/ddg/CartesianddG.cc:958]: (style) Local variable 'native_score' shadows outer variable [shadowVariable]
[protocols/ddg/CartesianddG.cc:913] -> [protocols/ddg/CartesianddG.cc:930]: (style) Local variable 'mutations_json' shadows outer variable [shadowVariable]
[protocols/ddg/CartesianddG.hh:128]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/ddg/CartesianddG.hh:164]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[protocols/ddg/CartesianddG.hh:240]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[protocols/ddg/CartesianddG.hh:256]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[protocols/ddg/ddGData.cc:52]: (performance) Variable 'file_to_read_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/ddg/ddGData.cc:53]: (performance) Variable 'curr_mut_filename' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/ddg/ddGData.cc:54]: (performance) Variable 'curr_wt_filename' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/ddg/ddGData.cc:55]: (performance) Variable 'experimental' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/ddg/ddGData.cc:60]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[protocols/ddg/ddGData.cc:61]: (performance) Variable 'file_to_read_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/ddg/ddGData.cc:62]: (performance) Variable 'curr_mut_filename' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/ddg/ddGData.cc:63]: (performance) Variable 'curr_wt_filename' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/ddg/ddGData.cc:64]: (performance) Variable 'experimental' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/ddg/ddG_main.cc:106]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/ddg/ddG_main.cc:253]: (style) Variable 'wt_averaged_score_components' is assigned a value that is never used. [unreadVariable]
[protocols/ddg/ddGMover.cc:549] -> [protocols/ddg/ddGMover.cc:323]: (style) Local variable 'min_index' shadows outer function [shadowFunction]
[protocols/ddg/ddGMover.cc:549] -> [protocols/ddg/ddGMover.cc:708]: (style) Local variable 'min_index' shadows outer function [shadowFunction]
[protocols/ddg/ddGMover.cc:549] -> [protocols/ddg/ddGMover.cc:762]: (style) Local variable 'min_index' shadows outer function [shadowFunction]
[protocols/ddg/ddGMover.cc:928]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/denovo_design/architects/CompoundArchitect.cc:68]: (performance) Function parameter 'tag_name' should be passed by const reference. [passedByValue]
[protocols/denovo_design/architects/CompoundArchitect.cc:82]: (performance) Function parameter 'tag_name' should be passed by const reference. [passedByValue]
[protocols/denovo_design/architects/DeNovoArchitect.cc:127]: (style) Parameter 'attlist' can be declared with const [constParameter]
[protocols/denovo_design/architects/DeNovoArchitect.hh:150] -> [protocols/denovo_design/architects/DeNovoArchitect.hh:158]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/denovo_design/architects/PoseArchitect.cc:87]: (style) Variable 'selector_' is assigned a value that is never used. [unreadVariable]
[protocols/denovo_design/architects/StructureArchitect.cc:57]: (style) Parameter 'attlist' can be declared with const [constParameter]
[protocols/denovo_design/components/FoldGraph.cc:274] -> [protocols/denovo_design/components/FoldGraph.cc:313]: (style) Local variable 'e' shadows outer variable [shadowVariable]
[protocols/denovo_design/components/FoldGraph.cc:274] -> [protocols/denovo_design/components/FoldGraph.cc:338]: (style) Local variable 'e' shadows outer variable [shadowVariable]
[protocols/denovo_design/components/FoldGraph.cc:274] -> [protocols/denovo_design/components/FoldGraph.cc:341]: (style) Local variable 'e' shadows outer variable [shadowVariable]
[protocols/denovo_design/components/FoldGraph.cc:442] -> [protocols/denovo_design/components/FoldGraph.cc:454]: (style) Local variable 'e' shadows outer variable [shadowVariable]
[protocols/denovo_design/components/FoldGraph.cc:442] -> [protocols/denovo_design/components/FoldGraph.cc:464]: (style) Local variable 'e' shadows outer variable [shadowVariable]
[protocols/denovo_design/components/FoldGraph.cc:895]: (style) Variable 'solutions_return' is assigned a value that is never used. [unreadVariable]
[protocols/denovo_design/components/Picker.cc:104]: (style) Variable 'cached' is assigned a value that is never used. [unreadVariable]
[protocols/denovo_design/components/Segment.cc:438] -> [protocols/denovo_design/components/Segment.cc:441]: (warning) Identical condition and return expression 'cutpoint_', return value is always 0 [identicalConditionAfterEarlyExit]
[protocols/denovo_design/components/SheetDB.cc:1014]: (warning) Assert statement calls a function which may have desired side effects: 'conformation'. [assertWithSideEffect]
[protocols/denovo_design/components/SheetDB.cc:1098]: (style) Parameter 'spairs' can be declared with const [constParameter]
[protocols/denovo_design/components/SheetDB.cc:1151]: (style) Unused variable: orientations_str [unusedVariable]
[protocols/denovo_design/components/SheetDB.cc:1286]: (style) Unused variable: retval [unusedVariable]
[protocols/denovo_design/components/SheetDB.cc:252] -> [protocols/denovo_design/components/SheetDB.cc:1151]: (style) Local variable 'orientations_str' shadows outer function [shadowFunction]
[protocols/denovo_design/components/SheetDB.cc:763]: (warning) Assert statement calls a function which may have desired side effects: 'conformation'. [assertWithSideEffect]
[protocols/denovo_design/components/SheetDB.cc:903] -> [protocols/denovo_design/components/SheetDB.cc:908]: (style) Argument '(start)||handle_assert_failure("start","protocols/denovo_design/components/SheetDB.cc",908)' to function assert is always 1 [constArgument]
[protocols/denovo_design/components/SheetDB.cc:903] -> [protocols/denovo_design/components/SheetDB.cc:909]: (style) Argument '(stop)||handle_assert_failure("stop","protocols/denovo_design/components/SheetDB.cc",909)' to function assert is always 1 [constArgument]
[protocols/denovo_design/components/StructureData.cc:2250]: (style) Checking if unsigned expression 'movable_group' is less than zero. [unsignedLessThanZero]
[protocols/denovo_design/components/StructureData.cc:884]: (style) Variable 'stop_del' is assigned a value that is never used. [unreadVariable]
[protocols/denovo_design/components/StructureDataFactory.cc:249] -> [protocols/denovo_design/components/StructureDataFactory.cc:253]: (warning) Identical inner 'if' condition is always true. [identicalInnerCondition]
[protocols/denovo_design/components/StructureDataFactory.cc:542]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/denovo_design/components/StructureDataFactory.cc:566]: (warning) Assert statement calls a function which may have desired side effects: 'data'. [assertWithSideEffect]
[protocols/denovo_design/components/StructureDataFactory.cc:659]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/denovo_design/components/StructureDataWithPose.cc:1102]: (warning) Assert statement calls a function which may have desired side effects: 'start'. [assertWithSideEffect]
[protocols/denovo_design/components/StructureDataWithPose.cc:1103]: (warning) Assert statement calls a function which may have desired side effects: 'stop'. [assertWithSideEffect]
[protocols/denovo_design/components/StructureDataWithPose.cc:929]: (style) Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
[protocols/denovo_design/components/StructureDataWithPose.cc:942]: (style) Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
[protocols/denovo_design/connection/ConnectionArchitect.cc:323] -> [protocols/denovo_design/connection/ConnectionArchitect.cc:327]: (style) Local variable 'motif_str' shadows outer argument [shadowArgument]
[protocols/denovo_design/connection/ConnectionArchitect.cc:381]: (style) Variable 'alt_id' is assigned a value that is never used. [unreadVariable]
[protocols/denovo_design/connection/ConnectionArchitect.cc:384]: (style) Variable 'alt_id' is assigned a value that is never used. [unreadVariable]
[protocols/denovo_design/filters/SSPredictionFilter.cc:234]: (performance) Function parameter 'secstruct' should be passed by const reference. [passedByValue]
[protocols/denovo_design/filters/SSShapeComplementarityFilter.cc:195] -> [protocols/denovo_design/filters/SSShapeComplementarityFilter.cc:208]: (style) Local variable 'r' shadows outer variable [shadowVariable]
[protocols/denovo_design/movers/BuildDeNovoBackboneMover.cc:837]: (performance) Function parameter 'folder_name' should be passed by const reference. [passedByValue]
[protocols/denovo_design/movers/BuildDeNovoBackboneMover.cc:841]: (performance) Function parameter 'perturber_name' should be passed by const reference. [passedByValue]
[protocols/denovo_design/movers/BuildDeNovoBackboneMover.cc:854]: (performance) Function parameter 'subelement_name' should be passed by const reference. [passedByValue]
[protocols/denovo_design/movers/BuildDeNovoBackboneMover.cc:858]: (performance) Function parameter 'subelement_name' should be passed by const reference. [passedByValue]
[protocols/denovo_design/movers/BuildDeNovoBackboneMover.cc:862]: (performance) Function parameter 'subelement_name' should be passed by const reference. [passedByValue]
[protocols/denovo_design/movers/BuildDeNovoBackboneMover.cc:866]: (performance) Function parameter 'subelement_name' should be passed by const reference. [passedByValue]
[protocols/denovo_design/task_operations/ConsensusLoopDesignOperation.cc:466]: (warning) Member variable 'AAFrequency::aa_' is not initialized in the constructor. [uninitMemberVar]
[protocols/denovo_design/util.cc:183] -> [protocols/denovo_design/util.cc:184]: (style) Condition 'keep_chirality' is always true [knownConditionTrueFalse]
[protocols/denovo_design/util.cc:186] -> [protocols/denovo_design/util.cc:187]: (style) Condition 'keep_chirality' is always true [knownConditionTrueFalse]
[protocols/denovo_design/util.cc:530] -> [protocols/denovo_design/util.cc:538]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/denovo_design/util.hh:81] -> [protocols/denovo_design/architects/StrandArchitect.cc:156]: (style) Local variable 'abego_str' shadows outer function [shadowFunction]
[protocols/design_opt/GreedyOptMutationMover.cc:908]: (performance) Function parameter 'tag_name' should be passed by const reference. [passedByValue]
[protocols/design_opt/GreedyOptMutationMover.cc:913]: (performance) Function parameter 'tag_name' should be passed by const reference. [passedByValue]
[protocols/design_opt/GreedyOptMutationMover.hh:73]: (performance) Function parameter 'sample_type' should be passed by const reference. [passedByValue]
[protocols/dna/DnaChains.cc:38]: (performance) Variable 'positions_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/dna/DnaInterfacePacker.cc:554]: (performance) Function parameter 'pdbname' should be passed by const reference. [passedByValue]
[protocols/dna_dock/DNAClashCheckFilter.cc:122]: (performance) Function parameter 'dna_a_path' should be passed by const reference. [passedByValue]
[protocols/dna_dock/DNAClashCheckFilter.cc:123]: (performance) Function parameter 'dna_b_path' should be passed by const reference. [passedByValue]
[protocols/dna_dock/DNAClashCheckFilter.cc:93]: (performance) Function parameter 'dna_a_path' should be passed by const reference. [passedByValue]
[protocols/dna_dock/DNAClashCheckFilter.cc:93]: (performance) Function parameter 'dna_b_path' should be passed by const reference. [passedByValue]
[protocols/dna_dock/PropagateClashCheckFilter.cc:136]: (performance) Function parameter 'default_bridge_type' should be passed by const reference. [passedByValue]
[protocols/dna/util.cc:368]: (style) Condition 'verbosity>=2' is always false [knownConditionTrueFalse]
[protocols/dna/util.cc:379]: (style) Condition 'verbosity>=2' is always false [knownConditionTrueFalse]
[protocols/dna/util.cc:382]: (style) Condition 'verbosity>=2' is always false [knownConditionTrueFalse]
[protocols/docking/ConformerSwitchMover.cc:154]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/docking/ConformerSwitchMover.cc:85]: (performance) Variable 'ensemble_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/docking/ConformerSwitchMover.cc:87]: (performance) Variable 'lowres_filter_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/docking/DockFilters.cc:113]: (performance) Variable 'movable_jumps_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/docking/DockingEnsemble.cc:169]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/docking/DockingEnsemble.cc:196]: (performance) Function parameter 'partner_num' should be passed by const reference. [passedByValue]
[protocols/docking/DockingEnsemble.cc:219]: (performance) Function parameter 'partner_num' should be passed by const reference. [passedByValue]
[protocols/docking/DockingEnsemble.cc:82]: (performance) Variable 'conf_num_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/docking/DockingEnsemble.cc:84]: (performance) Variable 'scorefxn_low_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/docking/DockingEnsemble.cc:85]: (performance) Variable 'scorefxn_high_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/docking/DockingEnsemblePrepackProtocol.hh:66]: (performance) Function parameter 'ensemble1' should be passed by const reference. [passedByValue]
[protocols/docking/DockingEnsemblePrepackProtocol.hh:67]: (performance) Function parameter 'ensemble2' should be passed by const reference. [passedByValue]
[protocols/docking/DockingHighRes.cc:115]: (performance) Variable 'partners_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/docking/DockingHighRes.cc:117]: (performance) Variable 'scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/docking/DockingHighRes.hh:111]: (performance) Function parameter 'partners' should be passed by const reference. [passedByValue]
[protocols/docking/DockingHighResLegacy.cc:106]: (warning) Member variable 'DockingHighResLegacy::bb_' is not initialized in the constructor. [uninitMemberVar]
[protocols/docking/DockingHighResLegacy.cc:106]: (warning) Member variable 'DockingHighResLegacy::chi_' is not initialized in the constructor. [uninitMemberVar]
[protocols/docking/DockingHighResLegacy.cc:106]: (warning) Member variable 'DockingHighResLegacy::nb_list_' is not initialized in the constructor. [uninitMemberVar]
[protocols/docking/DockingHighResLegacy.cc:106]: (warning) Member variable 'DockingHighResLegacy::repack_switch_' is not initialized in the constructor. [uninitMemberVar]
[protocols/docking/DockingHighResLegacy.cc:106]: (warning) Member variable 'DockingHighResLegacy::rt_min_' is not initialized in the constructor. [uninitMemberVar]
[protocols/docking/DockingHighResLegacy.cc:106]: (warning) Member variable 'DockingHighResLegacy::sc_min_' is not initialized in the constructor. [uninitMemberVar]
[protocols/docking/DockingHighResLegacy.cc:167]: (performance) Function parameter 'min_type_in' should be passed by const reference. [passedByValue]
[protocols/docking/DockingHighResLegacy.cc:316]: (style) Variable 'loop_start' is assigned a value that is never used. [unreadVariable]
[protocols/docking/DockingHighResLegacy.cc:317]: (style) Variable 'loop_stop' is assigned a value that is never used. [unreadVariable]
[protocols/docking/DockingInitialPerturbation.cc:114]: (warning) Member variable 'DockingInitialPerturbation::autofoldtree_' is not initialized in the constructor. [uninitMemberVar]
[protocols/docking/DockingInitialPerturbation.hh:104]: (performance) Function parameter 'tilt_center' should be passed by const reference. [passedByValue]
[protocols/docking/DockingInitialPerturbation.hh:107]: (performance) Function parameter 'tilt_center' should be passed by const reference. [passedByValue]
[protocols/docking/DockingPrepackProtocol.cc:135]: (performance) Function parameter 'outfilename' should be passed by const reference. [passedByValue]
[protocols/docking/DockingPrepackProtocol.cc:136]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/docking/DockingProtocol.cc:975]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/docking/DockMCMCycle.hh:87]: (performance) Function parameter 'min_type' should be passed by const reference. [passedByValue]
[protocols/docking/DockMinMover.hh:72]: (performance) Function parameter 'min_type' should be passed by const reference. [passedByValue]
[protocols/docking/DockTaskFactory.cc:73]: (performance) Variable 'design_chains_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/docking/DockTaskFactory.cc:75]: (performance) Variable 'restrict_to_interface_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/docking/EllipsoidalRandomizationMover.cc:228]: (style) Variable 'rotated_point_on_ellipsoid' is assigned a value that is never used. [unreadVariable]
[protocols/docking/EllipsoidalRandomizationMover.cc:325]: (error) When i==partners_.size(), partners_[i] is out of bounds. [stlOutOfBounds]
[protocols/docking/EllipsoidalRandomizationMover.cc:604] -> [protocols/docking/EllipsoidalRandomizationMover.cc:609]: (style) Local variable 'rsd' shadows outer variable [shadowVariable]
[protocols/docking/EllipsoidalRandomizationMover.cc:605] -> [protocols/docking/EllipsoidalRandomizationMover.cc:610]: (style) Local variable 'atom_coords' shadows outer variable [shadowVariable]
[protocols/docking/membrane/MPDockingSetupMover.cc:84]: (warning) Member variable 'MPDockingSetupMover::optimize1_' is not initialized in the constructor. [uninitMemberVar]
[protocols/docking/membrane/MPDockingSetupMover.cc:84]: (warning) Member variable 'MPDockingSetupMover::optimize2_' is not initialized in the constructor. [uninitMemberVar]
[protocols/docking/membrane/MPFindInterfaceMover.cc:118]: (warning) Member variable 'MPFindInterfaceMover::flexible_bb_' is not initialized in the constructor. [uninitMemberVar]
[protocols/docking/membrane/MPFindInterfaceMover.cc:118]: (warning) Member variable 'MPFindInterfaceMover::flexible_sc_' is not initialized in the constructor. [uninitMemberVar]
[protocols/docking/membrane/MPFindInterfaceMover.cc:118]: (warning) Member variable 'MPFindInterfaceMover::flips_' is not initialized in the constructor. [uninitMemberVar]
[protocols/docking/membrane/MPFindInterfaceMover.cc:118]: (warning) Member variable 'MPFindInterfaceMover::jump_' is not initialized in the constructor. [uninitMemberVar]
[protocols/docking/membrane/MPFindInterfaceMover.cc:118]: (warning) Member variable 'MPFindInterfaceMover::mode_lowres_' is not initialized in the constructor. [uninitMemberVar]
[protocols/docking/membrane/MPFindInterfaceMover.cc:232] -> [protocols/docking/membrane/MPFindInterfaceMover.cc:344]: (style) Local variable 'slide_axis' shadows outer variable [shadowVariable]
[protocols/docking/membrane/MPFindInterfaceMover.cc:687]: (style) Parameter 'interface' can be declared with const [constParameter]
[protocols/docking/membrane/MPFindInterfaceMover.cc:718]: (style) Parameter 'interface' can be declared with const [constParameter]
[protocols/docking/membrane/QuickRelaxPartnersSeparately.cc:84]: (warning) Member variable 'QuickRelaxPartnersSeparately::jump_' is not initialized in the constructor. [uninitMemberVar]
[protocols/domain_assembly/AssembleLinkerMover.cc:88] -> [protocols/domain_assembly/AssembleLinkerMover.cc:100]: (style) Local variable 'loops' shadows outer variable [shadowVariable]
[protocols/electron_density/BfactorFittingMover.cc:109]: (performance) Variable 'B_EPS' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/electron_density/DensitySymmInfo.cc:298]: (style) Parameter 'vol' can be declared with const [constParameter]
[protocols/electron_density/DockIntoDensityMover.cc:361]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/electron_density/DockIntoDensityMover.hh:100]: (style) Parameter 't1' can be declared with const [constParameter]
[protocols/electron_density/DockIntoDensityMover.hh:100]: (style) Parameter 't2' can be declared with const [constParameter]
[protocols/electron_density/DockIntoDensityMover.hh:112]: (style) Parameter 't1' can be declared with const [constParameter]
[protocols/electron_density/DockIntoDensityMover.hh:112]: (style) Parameter 't2' can be declared with const [constParameter]
[protocols/electron_density/DockIntoDensityMover.hh:195]: (performance) Function parameter 'silent_out' should be passed by const reference. [passedByValue]
[protocols/electron_density/DockIntoDensityMover.hh:198]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[protocols/electron_density/DockIntoDensityMover.hh:65]: (performance) Variable 'pose_idx_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/electron_density/DockIntoDensityMover.hh:66]: (performance) Variable 'score_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/electron_density/DockIntoDensityMover.hh:67]: (performance) Variable 'pre_trans_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/electron_density/DockIntoDensityMover.hh:68]: (performance) Variable 'post_trans_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/electron_density/DockIntoDensityMover.hh:69]: (performance) Variable 'rotation_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/electron_density/DockIntoDensityMover.hh:92]: (performance) Variable 'score_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/electron_density/DockIntoDensityMover.hh:93]: (performance) Variable 'pose_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/electron_density/SetupForDensityScoringMover.cc:139]: (style) Parameter 'opts' can be declared with const [constParameter]
[protocols/electron_density/SetupForDensityScoringMover.cc:77]: (performance) Variable 'dock_into_dens_strategy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/energy_based_clustering/EnergyBasedClusteringProtocol.cc:567]: (style) The scope of the variable 'ir' can be reduced. [variableScope]
[protocols/energy_based_clustering/EnergyBasedClusteringProtocol.cc:649]: (style) Variable 'buffer' is assigned a value that is never used. [unreadVariable]
[protocols/environment/claims/EnvClaim.cc:72]: (performance) Function parameter 'tag_name' should be passed by const reference. [passedByValue]
[protocols/environment/CoMTrackerCM.cc:111]: (style) Variable 'ann' is assigned a value that is never used. [unreadVariable]
[protocols/environment/CoMTrackerCM.cc:237]: (style) Variable 'pp' is assigned a value that is never used. [unreadVariable]
[protocols/environment/CoMTrackerCM.cc:296]: (style) Variable 'stationary_attchmnt_pt' is assigned a value that is never used. [unreadVariable]
[protocols/environment/CoMTrackerCM.cc:298]: (style) Variable 'stationary_attchmnt_pt' is assigned a value that is never used. [unreadVariable]
[protocols/environment/EnvClaimBroker.cc:182]: (warning) Assert statement calls a function which may have desired side effects: 'data'. [assertWithSideEffect]
[protocols/environment/Environment.cc:130]: (warning) Assert statement calls a function which may have desired side effects: 'data'. [assertWithSideEffect]
[protocols/environment/Environment.cc:53]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[protocols/environment/EnvMover.cc:51]: (performance) Variable 'env_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/environment/ScriptCM.cc:236]: (performance) Function parameter 'tag_name' should be passed by const reference. [passedByValue]
[protocols/enzdes/EnzdesFlexBBProtocol.cc:105]: (warning) Member variable 'EnzdesFlexBBProtocol::minimize_cats_' is not initialized in the constructor. [uninitMemberVar]
[protocols/enzdes/EnzdesFlexBBProtocol.cc:1545] -> [protocols/enzdes/EnzdesFlexBBProtocol.cc:1575]: (style) Local variable 'looptask' shadows outer variable [shadowVariable]
[protocols/enzdes/EnzdesFlexBBProtocol.cc:1866] -> [protocols/enzdes/EnzdesFlexBBProtocol.cc:1901]: (style) Condition 'frag_close_to_native' is always true [knownConditionTrueFalse]
[protocols/enzdes/EnzdesMovers.cc:412]: (warning) Member variable 'RepackLigandSiteWithoutLigandMover::separate_prt_ligand_' is not initialized in the constructor. [uninitMemberVar]
[protocols/enzdes/EnzdesMovers.cc:418]: (warning) Member variable 'RepackLigandSiteWithoutLigandMover::separate_prt_ligand_' is not initialized in the constructor. [uninitMemberVar]
[protocols/enzdes/EnzdesMovers.cc:518] -> [protocols/enzdes/EnzdesMovers.cc:528]: (style) Local variable 'pack_region' shadows outer variable [shadowVariable]
[protocols/enzdes/EnzFilters.hh:139]: (warning) Member variable 'LigInterfaceEnergyFilter::include_cstE_' is not initialized in the constructor. [uninitMemberVar]
[protocols/enzdes/EnzFilters.hh:331]: (warning) Member variable 'RepackWithoutLigandFilter::calc_dE_' is not initialized in the constructor. [uninitMemberVar]
[protocols/enzdes/EnzFilters.hh:331]: (warning) Member variable 'RepackWithoutLigandFilter::calc_rms_' is not initialized in the constructor. [uninitMemberVar]
[protocols/enzdes/EnzFilters.hh:331]: (warning) Member variable 'RepackWithoutLigandFilter::rms_all_rpked_' is not initialized in the constructor. [uninitMemberVar]
[protocols/enzdes/EnzFilters.hh:331]: (warning) Member variable 'RepackWithoutLigandFilter::use_cstids_' is not initialized in the constructor. [uninitMemberVar]
[protocols/enzdes/EnzFilters.hh:348]: (performance) Function parameter 'setting' should be passed by const reference. [passedByValue]
[protocols/enzdes/EnzRepackMinimize.cc:110] -> [protocols/enzdes/EnzRepackMinimize.cc:141]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/enzdes/PackRotamersMoverPartGreedy.cc:83]: (warning) Member variable 'PackRotamersMoverPartGreedy::use_cstids_' is not initialized in the constructor. [uninitMemberVar]
[protocols/enzdes/SecondaryMatchProtocol.cc:85]: (performance) Variable 'reduced_scofx_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/evaluation/AlignEvaluator.cc:43]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[protocols/evaluation/util.cc:141]: (style) Parameter 'eval' can be declared with const [constParameter]
[protocols/evolution/AlignmentAAFinderFilter.cc:267]: (style) Condition 'use_stability_in_target_seq_as_cutoff' is always true [knownConditionTrueFalse]
[protocols/evolution/EvolutionaryDynamicsMover.cc:225]: (style) Condition 'fixation_probability*fix_p_normalizer>1.0' is always false [knownConditionTrueFalse]
[protocols/evolution/EvolutionaryDynamicsMover.cc:253]: (style) Variable 'pose_sequence' is assigned a value that is never used. [unreadVariable]
[protocols/evolution/NucleotideMutation.cc:82]: (warning) Member variable 'NucleotideMutation::cache_task_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/BatchFeatures.cc:71] -> [protocols/features/BatchFeatures.cc:76]: (style) Local variable 'batch_id' shadows outer argument [shadowArgument]
[protocols/features/BatchFeatures.cc:71] -> [protocols/features/BatchFeatures.cc:95]: (style) Local variable 'batch_id' shadows outer argument [shadowArgument]
[protocols/features/DatabaseFilters.cc:90]: (performance) Function parameter 'current_input' should be passed by const reference. [passedByValue]
[protocols/features/helixAssembly/HelixBundleFeatures.cc:84]: (performance) Variable 'scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/features/HelixCapFeatures.cc:140]: (performance) Function parameter 'dssp_code' should be passed by const reference. [passedByValue]
[protocols/features/InterfaceFeatures.cc:200]: (performance) Inefficient usage of string::find() in condition; string::starts_with() could be faster. [stlIfStrFind]
[protocols/features/InterfaceFeatures.cc:486]: (style) Variable 'res_data' is assigned a value that is never used. [unreadVariable]
[protocols/features/InterfaceFeatures.cc:529]: (style) Variable 'primary_key' is assigned a value that is never used. [unreadVariable]
[protocols/features/InterfaceFeatures.cc:536]: (style) Variable 'dSASA_bb' is assigned a value that is never used. [unreadVariable]
[protocols/features/InterfaceFeatures.cc:540]: (style) Variable 'dhSASA_bb' is assigned a value that is never used. [unreadVariable]
[protocols/features/InterfaceFeatures.cc:63]: (performance) Variable 'interface_analyzer_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/features/InterfaceFeatures.cc:64]: (performance) Variable 'scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/features/InterfaceFeatures.cc:695]: (style) Variable 'primary_key' is assigned a value that is never used. [unreadVariable]
[protocols/features/InterfaceFeatures.cc:712]: (style) Variable 'dSASA_bb' is assigned a value that is never used. [unreadVariable]
[protocols/features/InterfaceFeatures.cc:715]: (style) Variable 'dhSASA_bb' is assigned a value that is never used. [unreadVariable]
[protocols/features/LoopAnchorFeatures.cc:72]: (warning) Member variable 'LoopAnchorFeatures::use_relevant_residues_as_loop_length_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/ProteinBondGeometryFeatures.cc:72]: (performance) Variable 'db_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/features/ProteinSilentReport.cc:89]: (performance) Variable 'database_filter_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/features/ProtocolFeatures.cc:75] -> [protocols/features/ProtocolFeatures.cc:81]: (style) Local variable 'protocol_id' shadows outer argument [shadowArgument]
[protocols/features/ProtocolFeatures.cc:75] -> [protocols/features/ProtocolFeatures.cc:93]: (style) Local variable 'protocol_id' shadows outer argument [shadowArgument]
[protocols/features/ResidueScoresFeatures.cc:418] -> [protocols/features/ResidueScoresFeatures.cc:484]: (style) Local variable 'emap' shadows outer variable [shadowVariable]
[protocols/features/SecondaryStructureSegmentFeatures.cc:134]: (performance) Function parameter 'dssp_code' should be passed by const reference. [passedByValue]
[protocols/features/SecondaryStructureSegmentFeatures.cc:144]: (performance) Function parameter 'dssp_code' should be passed by const reference. [passedByValue]
[protocols/features/SimpleMetricFeatures.cc:119]: (performance) Function parameter 'table_name' should be passed by const reference. [passedByValue]
[protocols/features/SimpleMetricFeatures.cc:124]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[protocols/features/SimpleMetricFeatures.cc:124]: (performance) Function parameter 'suffix' should be passed by const reference. [passedByValue]
[protocols/features/SimpleMetricFeatures.hh:57]: (performance) Function parameter 'r_value' should be passed by const reference. [passedByValue]
[protocols/features/SmotifFeatures.cc:229] -> [protocols/features/SmotifFeatures.cc:239]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/features/SmotifFeatures.cc:229] -> [protocols/features/SmotifFeatures.cc:244]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/features/strand_assembly/CheckForSandwichFeatures.cc:1361] -> [protocols/features/strand_assembly/CheckForSandwichFeatures.cc:1370]: (style) Local variable 'heading' shadows outer variable [shadowVariable]
[protocols/features/strand_assembly/CheckForSandwichFeatures.cc:1688]: (performance) Function parameter 'strand_i' should be passed by const reference. [passedByValue]
[protocols/features/strand_assembly/CheckForSandwichFeatures.cc:1689]: (performance) Function parameter 'strand_j' should be passed by const reference. [passedByValue]
[protocols/features/strand_assembly/CheckForSandwichFeatures.cc:1943] -> [protocols/features/strand_assembly/CheckForSandwichFeatures.cc:1969]: (style) Local variable 'sheet_id' shadows outer argument [shadowArgument]
[protocols/features/strand_assembly/CheckForSandwichFeatures.cc:2000] -> [protocols/features/strand_assembly/CheckForSandwichFeatures.cc:2039]: (style) Local variable 'res' shadows outer variable [shadowVariable]
[protocols/features/strand_assembly/CheckForSandwichFeatures.cc:2100]: (performance) Function parameter 'strand_i' should be passed by const reference. [passedByValue]
[protocols/features/strand_assembly/CheckForSandwichFeatures.cc:2101]: (performance) Function parameter 'strand_j' should be passed by const reference. [passedByValue]
[protocols/features/strand_assembly/CheckForSandwichFeatures.cc:2128] -> [protocols/features/strand_assembly/CheckForSandwichFeatures.cc:2151]: (style) Local variable 'sheet_id' shadows outer argument [shadowArgument]
[protocols/features/strand_assembly/CheckForSandwichFeatures.cc:2297]: (performance) Function parameter 'strand_i' should be passed by const reference. [passedByValue]
[protocols/features/strand_assembly/CheckForSandwichFeatures.cc:2298]: (performance) Function parameter 'strand_j' should be passed by const reference. [passedByValue]
[protocols/features/strand_assembly/CheckForSandwichFeatures.cc:2419] -> [protocols/features/strand_assembly/CheckForSandwichFeatures.cc:2471]: (style) Local variable 'residue_begin' shadows outer argument [shadowArgument]
[protocols/features/strand_assembly/CheckForSandwichFeatures.cc:2420] -> [protocols/features/strand_assembly/CheckForSandwichFeatures.cc:2471]: (style) Local variable 'residue_end' shadows outer argument [shadowArgument]
[protocols/features/strand_assembly/CheckForSandwichFeatures.cc:835]: (performance) Function parameter 'strand_i' should be passed by const reference. [passedByValue]
[protocols/features/strand_assembly/CheckForSandwichFeatures.cc:836]: (performance) Function parameter 'strand_j' should be passed by const reference. [passedByValue]
[protocols/features/strand_assembly/CheckForSandwichFeatures.cc:860]: (performance) Function parameter 'strand_i' should be passed by const reference. [passedByValue]
[protocols/features/strand_assembly/CheckForSandwichFeatures.cc:861]: (performance) Function parameter 'strand_j' should be passed by const reference. [passedByValue]
[protocols/features/strand_assembly/CheckForSandwichFeatures.cc:867]: (style) Variable 'i_resnum_1' is assigned a value that is never used. [unreadVariable]
[protocols/features/strand_assembly/CheckForSandwichFeatures.cc:868]: (style) Variable 'j_resnum_1' is assigned a value that is never used. [unreadVariable]
[protocols/features/strand_assembly/CheckForSandwichFeatures.cc:870]: (style) Variable 'i_resnum_2' is assigned a value that is never used. [unreadVariable]
[protocols/features/strand_assembly/CheckForSandwichFeatures.cc:871]: (style) Variable 'j_resnum_2' is assigned a value that is never used. [unreadVariable]
[protocols/features/strand_assembly/CheckForSandwichFeatures.cc:873]: (style) Variable 'i_resnum_3' is assigned a value that is never used. [unreadVariable]
[protocols/features/strand_assembly/CheckForSandwichFeatures.cc:874]: (style) Variable 'j_resnum_3' is assigned a value that is never used. [unreadVariable]
[protocols/features/strand_assembly/SandwichFeatures.cc:1293] -> [protocols/features/strand_assembly/SandwichFeatures.cc:1317]: (style) Local variable 'num_of_sheets_that_surround_this_sheet' shadows outer variable [shadowVariable]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::chance_of_being_canonical_sw' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::count_AA_with_direction_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::do_not_connect_sheets_by_loops_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::do_not_write_resfile_of_sandwich_that_has_non_canonical_LR_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::exclude_desinated_pdbs_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::exclude_sandwich_that_has_near_backbone_atoms_between_sheets_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::exclude_sandwich_that_has_non_canonical_LR_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::exclude_sandwich_that_has_non_canonical_properties_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::exclude_sandwich_that_has_non_canonical_shortest_dis_between_facing_aro_in_sw_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::exclude_sandwich_that_is_linked_w_same_direction_strand_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::exclude_sandwich_that_is_suspected_to_have_not_facing_2_sheets_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::exclude_sandwich_with_SS_bond_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::extract_sandwich_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::no_helix_in_pdb_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::primary_seq_distance_cutoff_for_beta_sheet_capping_after_C_term_capping_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::primary_seq_distance_cutoff_for_beta_sheet_capping_after_N_term_capping_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::primary_seq_distance_cutoff_for_beta_sheet_capping_before_C_term_capping_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::primary_seq_distance_cutoff_for_beta_sheet_capping_before_N_term_capping_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::unit_test_pass_identifier' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::write_AA_kind_files_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::write_all_info_files_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::write_beta_sheet_capping_info_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::write_chain_B_resnum_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::write_electrostatic_interactions_of_all_residues_in_a_strand_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::write_electrostatic_interactions_of_all_residues_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::write_electrostatic_interactions_of_surface_residues_in_a_strand_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::write_heading_directions_of_all_AA_in_a_strand_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::write_loop_AA_distribution_files_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::write_p_aa_pp_files_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::write_phi_psi_of_all_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::write_phi_psi_of_E_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::write_rama_at_AA_to_files_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::write_resfile_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::write_resfile_NOT_FWY_on_surface_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::write_resfile_to_minimize_too_many_core_heading_FWY_on_core_strands_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::write_resfile_to_minimize_too_many_core_heading_FWY_on_edge_strands_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::write_resfile_to_minimize_too_much_hydrophobic_surface_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::write_resfile_when_seq_rec_is_bad_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/SandwichFeatures.cc:75]: (warning) Member variable 'SandwichFeatures::write_strand_AA_distribution_files_' is not initialized in the constructor. [uninitMemberVar]
[protocols/features/strand_assembly/StrandBundleFeatures.cc:491] -> [protocols/features/strand_assembly/StrandBundleFeatures.cc:501]: (style) Local variable 'dis_N_O' shadows outer variable [shadowVariable]
[protocols/features/strand_assembly/StrandBundleFeatures.cc:493] -> [protocols/features/strand_assembly/StrandBundleFeatures.cc:503]: (style) Local variable 'dis_O_N' shadows outer variable [shadowVariable]
[protocols/features/strand_assembly/StrandBundleFeatures.cc:527] -> [protocols/features/strand_assembly/StrandBundleFeatures.cc:540]: (style) Local variable 'dis_O_N' shadows outer variable [shadowVariable]
[protocols/features/strand_assembly/StrandBundleFeatures.cc:536] -> [protocols/features/strand_assembly/StrandBundleFeatures.cc:538]: (style) Local variable 'dis_N_O' shadows outer variable [shadowVariable]
[protocols/features/strand_assembly/StrandFragment.cc:88]: (performance) Function parameter 'pdb_source_' should be passed by const reference. [passedByValue]
[protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.cc:191]: (style) Parameter 'dssp_pose' can be declared with const [constParameter]
[protocols/features/strand_assembly/WriteToFileFromSandwichFeatures.cc:510]: (performance) Function parameter 'dssp_code' should be passed by const reference. [passedByValue]
[protocols/features/strand_assembly/WriteToFileFromSandwichFeatures.cc:511]: (performance) Function parameter 'heading_direction' should be passed by const reference. [passedByValue]
[protocols/features/strand_assembly/WriteToFileFromSandwichFeatures.cc:98]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[protocols/features/util.cc:134] -> [protocols/features/util.cc:150]: (style) The expression 'rank != 0' is always false. [knownConditionTrueFalse]
[protocols/features/util.cc:134] -> [protocols/features/util.cc:216]: (style) The expression 'rank != 0' is always false. [knownConditionTrueFalse]
[protocols/features/util.cc:274] -> [protocols/features/util.cc:303]: (style) Local variable 'report_name' shadows outer variable [shadowVariable]
[protocols/features/WaterFeatures.cc:142]: (style) Variable 'foreign_key1' is assigned a value that is never used. [unreadVariable]
[protocols/features/WaterFeatures.cc:150]: (style) Variable 'foreign_key2' is assigned a value that is never used. [unreadVariable]
[protocols/fibril/fibril_util.cc:87]: (style) Parameter 'symmdata' can be declared with const [constParameter]
[protocols/filters/CalculatorFilter.cc:51]: (performance) Variable 'calc_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/filters/CalculatorFilter.cc:93]: (performance) Function parameter 'report_key' should be passed by const reference. [passedByValue]
[protocols/fldsgn/filters/SecondaryStructureCountFilter.cc:181]: (style) Variable 'tmp_count' is assigned a value that is never used. [unreadVariable]
[protocols/fldsgn/filters/SecondaryStructureCountFilter.cc:183]: (style) Variable 'num_encounter' is assigned a value that is never used. [unreadVariable]
[protocols/fldsgn/filters/SecondaryStructureCountFilter.cc:53]: (warning) Member variable 'SecondaryStructureCountFilter::filter_helix_' is not initialized in the constructor. [uninitMemberVar]
[protocols/fldsgn/filters/SecondaryStructureCountFilter.cc:53]: (warning) Member variable 'SecondaryStructureCountFilter::filter_helix_sheet_' is not initialized in the constructor. [uninitMemberVar]
[protocols/fldsgn/filters/SecondaryStructureCountFilter.cc:53]: (warning) Member variable 'SecondaryStructureCountFilter::filter_loop_' is not initialized in the constructor. [uninitMemberVar]
[protocols/fldsgn/filters/SecondaryStructureCountFilter.cc:53]: (warning) Member variable 'SecondaryStructureCountFilter::filter_sheet_' is not initialized in the constructor. [uninitMemberVar]
[protocols/fldsgn/filters/SecondaryStructureCountFilter.cc:53]: (warning) Member variable 'SecondaryStructureCountFilter::return_total_' is not initialized in the constructor. [uninitMemberVar]
[protocols/fldsgn/filters/SecondaryStructureHasResidueFilter.cc:124]: (error) When i==seq.size(), seq[i] is out of bounds. [stlOutOfBounds]
[protocols/fldsgn/filters/SecondaryStructureHasResidueFilter.cc:124]: (error) When j==req_residue_str_.size(), req_residue_str_[j] is out of bounds. [stlOutOfBounds]
[protocols/fldsgn/filters/SecondaryStructureHasResidueFilter.cc:53]: (warning) Member variable 'SecondaryStructureHasResidueFilter::filter_helix_' is not initialized in the constructor. [uninitMemberVar]
[protocols/fldsgn/filters/SecondaryStructureHasResidueFilter.cc:53]: (warning) Member variable 'SecondaryStructureHasResidueFilter::filter_loop_' is not initialized in the constructor. [uninitMemberVar]
[protocols/fldsgn/filters/SecondaryStructureHasResidueFilter.cc:53]: (warning) Member variable 'SecondaryStructureHasResidueFilter::filter_sheet_' is not initialized in the constructor. [uninitMemberVar]
[protocols/fldsgn/filters/SheetTopologyFilter.cc:484]: (style) Parameter 'filtered_spairset' can be declared with const [constParameter]
[protocols/fldsgn/filters/SheetTopologyFilter.cc:504]: (style) Parameter 'spairset' can be declared with const [constParameter]
[protocols/fldsgn/MatchResidues.cc:158]: (style) Parameter 'attlist' can be declared with const [constParameter]
[protocols/fldsgn/potentials/sspot/NatbiasHelicesSheetPotential.cc:202] -> [protocols/fldsgn/potentials/sspot/NatbiasHelicesSheetPotential.cc:289]: (style) Local variable 'num' shadows outer variable [shadowVariable]
[protocols/fldsgn/SheetConstraintGenerator.cc:249]: (style) Parameter 'attlist' can be declared with const [constParameter]
[protocols/fldsgn/topology/BetaAlphaBetaMotif.cc:597]: (warning) Iterators to containers from different expressions 'hx' and 's1' are used together. [mismatchingContainerExpression]
[protocols/fldsgn/topology/BetaAlphaBetaMotif.cc:598]: (warning) Iterators to containers from different expressions 'hx' and 's2' are used together. [mismatchingContainerExpression]
[protocols/fldsgn/topology/BetaAlphaBetaMotif.cc:599]: (warning) Iterators to containers from different expressions 'hx' and 's1' are used together. [mismatchingContainerExpression]
[protocols/fldsgn/topology/BetaAlphaBetaMotif.cc:599]: (warning) Iterators to containers from different expressions 'hx' and 's2' are used together. [mismatchingContainerExpression]
[protocols/fldsgn/topology/Sheet.cc:464] -> [protocols/fldsgn/topology/Sheet.cc:478]: (style) Local variable 'neighbor' shadows outer variable [shadowVariable]
[protocols/fldsgn/topology/SS_Info2.cc:256]: (warning) Member variable 'SS_Info2::bbpos_is_set_' is not initialized in the constructor. [uninitMemberVar]
[protocols/flexpack/interaction_graph/MinimalistFlexbbInteractionGraph.cc:350]: (style) Parameter 'state_on_node' can be declared with const [constParameter]
[protocols/flexpack/interaction_graph/MinimalistFlexbbInteractionGraph.cc:359]: (style) Parameter 'state_on_node' can be declared with const [constParameter]
[protocols/flexpack/interaction_graph/OTFFlexbbInteractionGraph.cc:139]: (performance) Variable 'scsc_energy_curr_conf_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/flexpack/interaction_graph/OTFFlexbbInteractionGraph.cc:144]: (performance) Variable 'scsc_energy_alt_conf_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/flexpack/interaction_graph/OTFFlexbbInteractionGraph.cc:199]: (warning) Assert statement calls a function which may have desired side effects: 'get_flexbb_node'. [assertWithSideEffect]
[protocols/flexpack/interaction_graph/OTFFlexbbInteractionGraph.cc:201]: (warning) Assert statement calls a function which may have desired side effects: 'get_flexbb_node'. [assertWithSideEffect]
[protocols/flexpack/interaction_graph/OTFFlexbbInteractionGraph.cc:292]: (warning) Assert statement calls a function which may have desired side effects: 'get_flexbb_node'. [assertWithSideEffect]
[protocols/flexpack/interaction_graph/OTFFlexbbInteractionGraph.cc:294]: (warning) Assert statement calls a function which may have desired side effects: 'get_flexbb_node'. [assertWithSideEffect]
[protocols/flexpack/interaction_graph/OTFFlexbbInteractionGraph.cc:383]: (warning) Assert statement calls a function which may have desired side effects: 'get_flexbb_node'. [assertWithSideEffect]
[protocols/flexpack/interaction_graph/OTFFlexbbInteractionGraph.cc:384]: (warning) Assert statement calls a function which may have desired side effects: 'get_flexbb_node'. [assertWithSideEffect]
[protocols/flexpack/rotamer_set/FlexbbRotamerSets.cc:813]: (style) Condition 'sought_pair' is always false [knownConditionTrueFalse]
[protocols/flexpack/rotamer_set/FlexbbRotamerSets.cc:821]: (style) Condition 'sought_pair' is always false [knownConditionTrueFalse]
[protocols/flexpack/rotamer_set/FlexbbRotamerSets.cc:864]: (style) Condition 'sought_pair' is always false [knownConditionTrueFalse]
[protocols/flexpack/rotamer_set/FlexbbRotamerSets.cc:917]: (style) Condition 'sought_pair' is always false [knownConditionTrueFalse]
[protocols/flexpep_docking/FlexPepDockingAbInitio.cc:170]: (style) Parameter 'referencePose' can be declared with const [constParameter]
[protocols/flexpep_docking/FlexPepDockingAbInitio.cc:91]: (performance) Variable 'scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/flexpep_docking/FlexPepDockingFlags.cc:366]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/flexpep_docking/FlexPepDockingFlags.cc:478]: (style) Condition 'local_debug' is always true [knownConditionTrueFalse]
[protocols/flexpep_docking/FlexPepDockingFlags.cc:60]: (performance) Variable 'receptor_anchor_pos' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/flexpep_docking/FlexPepDockingFlags.hh:96]: (performance) Function parameter 'ch' should be passed by const reference. [passedByValue]
[protocols/flexpep_docking/FlexPepDockingLowRes.cc:139]: (style) Parameter 'referencePose' can be declared with const [constParameter]
[protocols/flexpep_docking/FlexPepDockingProtocol.cc:129]: (warning) Member variable 'FlexPepDockingProtocol::is_fail_' is not initialized in the constructor. [uninitMemberVar]
[protocols/flexpep_docking/FlexPepDockingProtocol.cc:129]: (warning) Member variable 'FlexPepDockingProtocol::is_trimmed_loops_' is not initialized in the constructor. [uninitMemberVar]
[protocols/flexpep_docking/FlexPepDockingProtocol.cc:141]: (warning) Member variable 'FlexPepDockingProtocol::is_fail_' is not initialized in the constructor. [uninitMemberVar]
[protocols/flexpep_docking/FlexPepDockingProtocol.cc:141]: (warning) Member variable 'FlexPepDockingProtocol::is_trimmed_loops_' is not initialized in the constructor. [uninitMemberVar]
[protocols/flexpep_docking/FlexPepDockingProtocol.cc:1500]: (style) Parameter 'pose_after_lowres' can be declared with const [constParameter]
[protocols/flexpep_docking/FlexPepDockingProtocol.cc:1540] -> [protocols/flexpep_docking/FlexPepDockingProtocol.cc:1550]: (style) Expression is always true because 'else if' condition is opposite to previous condition at line 1540. [multiCondition]
[protocols/flexpep_docking/FlexPepDockingProtocol.cc:599]: (style) Variable 'peptide_eigenvectors' is assigned a value that is never used. [unreadVariable]
[protocols/flexpep_docking/FlexPepDockingProtocol.cc:621]: (style) Variable 'binding_site_eigenvectors' is assigned a value that is never used. [unreadVariable]
[protocols/flexpep_docking/FlexPepDockingProtocol.cc:950]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/flexpep_docking/FlexPepDockingProtocol.cc:974]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/flxbb/FilterStructs.cc:85]: (performance) Variable 'current_trial_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/flxbb/LayerDesignOperation.cc:1205] -> [protocols/flxbb/LayerDesignOperation.cc:1208]: (style) Local variable 'task_op_type' shadows outer variable [shadowVariable]
[protocols/flxbb/LayerDesignOperation.cc:180]: (warning) Member variable 'LayerDesignOperation::ignore_pikaa_natro_' is not initialized in the constructor. [uninitMemberVar]
[protocols/fold_from_loops/constraint_generator/AutomaticSheetConstraintGenerator.hh:73]: (performance) Function parameter 'tag_name' should be passed by const reference. [passedByValue]
[protocols/fold_from_loops/constraint_generator/SegmentedAtomPairConstraintGenerator.hh:124]: (performance) Function parameter 'tag_name' should be passed by const reference. [passedByValue]
[protocols/fold_from_loops/filters/ConstraintFulfilmentFilter.hh:82]: (style) Unused private function: 'ConstraintFulfilmentFilter::default_selector' [unusedPrivateFunction]
[protocols/fold_from_loops/filters/ConstraintFulfilmentFilter.hh:85]: (style) Unused private function: 'ConstraintFulfilmentFilter::default_scorefxn' [unusedPrivateFunction]
[protocols/fold_from_loops/filters/RmsdFromResidueSelectorFilter.cc:105]: (style) Variable 'info_str' is assigned a value that is never used. [unreadVariable]
[protocols/fold_from_loops/filters/ScorePoseSegmentFromResidueSelectorFilter.hh:54]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[protocols/fold_from_loops/movers/DisplayPoseLabelsMover.cc:296]: (performance) Function parameter 'id' should be passed by const reference. [passedByValue]
[protocols/fold_from_loops/movers/SavePDBInfoMover.cc:42]: (warning) Member variable 'SavePDBInfoMover::restore_info_' is not initialized in the constructor. [uninitMemberVar]
[protocols/fold_from_loops/NubInitioMover.cc:1147]: (performance) Function parameter 'pick' should be passed by const reference. [passedByValue]
[protocols/fold_from_loops/NubInitioMover.cc:1155]: (performance) Function parameter 'pick' should be passed by const reference. [passedByValue]
[protocols/fold_from_loops/utils/Nub.cc:604]: (style) Variable 'unfolded_selection' is assigned a value that is never used. [unreadVariable]
[protocols/fold_from_loops/utils/Nub.cc:633]: (style) Condition 'seqmap_[i]==0' is always true [knownConditionTrueFalse]
[protocols/fold_from_loops/utils/Nub.cc:816]: (performance) Function parameter 'tag_name' should be passed by const reference. [passedByValue]
[protocols/forge/build/SegmentInsert.cc:59]: (warning) Member variable 'SegmentInsert::insert_connection_scheme_' is not initialized in the constructor. [uninitMemberVar]
[protocols/forge/build/SegmentInsert.cc:59]: (warning) Member variable 'SegmentInsert::keep_known_bb_torsions_at_junctions_' is not initialized in the constructor. [uninitMemberVar]
[protocols/forge/constraints/InvrotTreeRCG.cc:70]: (warning) Member variable 'InvrotTreeRCG::add_ligand_to_pose_' is not initialized in the constructor. [uninitMemberVar]
[protocols/forge/methods/fold_tree_functions.cc:1203]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/forge/methods/pose_mod.cc:144]: (style) Parameter 'archive_pose' can be declared with const [constParameter]
[protocols/forge/methods/util.hh:213] -> [protocols/forge/methods/util.hh:215]: (style) Local variable 'loop' shadows outer variable [shadowVariable]
[protocols/forge/methods/util.hh:213] -> [protocols/forge/methods/util.hh:219]: (style) Local variable 'loop' shadows outer variable [shadowVariable]
[protocols/forge/methods/util.hh:213] -> [protocols/forge/methods/util.hh:223]: (style) Local variable 'loop' shadows outer variable [shadowVariable]
[protocols/forge/remodel/RemodelAccumulator.cc:68]: (style) Parameter 'working_model' can be declared with const [constParameter]
[protocols/forge/remodel/RemodelAccumulator.cc:74]: (performance) Variable 'working_model_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/forge/remodel/RemodelConstraintGenerator.cc:117]: (style) Parameter 'attlist' can be declared with const [constParameter]
[protocols/forge/remodel/RemodelData.cc:483]: (style) Condition 'found_idx!=std::string::npos' is always true [knownConditionTrueFalse]
[protocols/forge/remodel/RemodelData.cc:63]: (warning) Member variable 'RemodelData::design_mode' is not initialized in the constructor. [uninitMemberVar]
[protocols/forge/remodel/RemodelData.cc:63]: (warning) Member variable 'RemodelData::insertionSize' is not initialized in the constructor. [uninitMemberVar]
[protocols/forge/remodel/RemodelData.cc:63]: (warning) Member variable 'RemodelData::pdb_start' is not initialized in the constructor. [uninitMemberVar]
[protocols/forge/remodel/RemodelData.cc:63]: (warning) Member variable 'RemodelData::pdb_stop' is not initialized in the constructor. [uninitMemberVar]
[protocols/forge/remodel/RemodelData.cc:63]: (warning) Member variable 'RemodelData::total_chain_break_score' is not initialized in the constructor. [uninitMemberVar]
[protocols/forge/remodel/RemodelData.cc:99] -> [protocols/forge/remodel/RemodelData.cc:138]: (style) Local variable 'line' shadows outer variable [shadowVariable]
[protocols/forge/remodel/RemodelDesignMover.cc:170]: (performance) Function parameter 'state_tag' should be passed by const reference. [passedByValue]
[protocols/forge/remodel/RemodelEnzdesCstModule.cc:68]: (style) Variable 'cst_cache' is assigned a value that is never used. [unreadVariable]
[protocols/forge/remodel/RemodelGlobalFrame.cc:228]: (style) Variable 'scalar' is assigned a value that is never used. [unreadVariable]
[protocols/forge/remodel/RemodelGlobalFrame.cc:490]: (style) Variable 'B' is assigned a value that is never used. [unreadVariable]
[protocols/forge/remodel/RemodelLoopMover.cc:1655] -> [protocols/forge/remodel/RemodelLoopMover.cc:1810]: (style) Local variable 'phi' shadows outer variable [shadowVariable]
[protocols/forge/remodel/RemodelLoopMover.cc:1656] -> [protocols/forge/remodel/RemodelLoopMover.cc:1811]: (style) Local variable 'psi' shadows outer variable [shadowVariable]
[protocols/forge/remodel/RemodelLoopMover.cc:1657] -> [protocols/forge/remodel/RemodelLoopMover.cc:1812]: (style) Local variable 'omega' shadows outer variable [shadowVariable]
[protocols/forge/remodel/RemodelLoopMover.cc:1666]: (performance) Inefficient usage of string::find() in condition; string::starts_with() could be faster. [stlIfStrFind]
[protocols/forge/remodel/RemodelLoopMover.cc:2132] -> [protocols/forge/remodel/RemodelLoopMover.cc:2202]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/forge/remodel/RemodelLoopMover.cc:2132] -> [protocols/forge/remodel/RemodelLoopMover.cc:2214]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/forge/remodel/RemodelLoopMover.cc:2132] -> [protocols/forge/remodel/RemodelLoopMover.cc:2232]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/forge/remodel/RemodelLoopMover.cc:2175] -> [protocols/forge/remodel/RemodelLoopMover.cc:2180]: (style) Condition '!reject' is always true [knownConditionTrueFalse]
[protocols/forge/remodel/RemodelLoopMover.cc:280]: (performance) Function parameter 'remodel_data' should be passed by const reference. [passedByValue]
[protocols/forge/remodel/RemodelLoopMover.cc:3175]: (style) Condition 'cbreak>=cbreak_tolerance' is always true [knownConditionTrueFalse]
[protocols/forge/remodel/RemodelLoopMover.cc:454] -> [protocols/forge/remodel/RemodelLoopMover.cc:478]: (style) Local variable 'PFT' shadows outer variable [shadowVariable]
[protocols/forge/remodel/RemodelLoopMover.cc:624]: (style) Condition 'res>segment_length' is always true [knownConditionTrueFalse]
[protocols/forge/remodel/RemodelLoopMover.hh:238]: (performance) Function parameter 'remodel_data' should be passed by const reference. [passedByValue]
[protocols/forge/remodel/RemodelLoopMover.hh:404]: (performance) Function parameter 'movemap' should be passed by const reference. [passedByValue]
[protocols/forge/remodel/RemodelLoopMover.hh:425]: (performance) Function parameter 'movemap' should be passed by const reference. [passedByValue]
[protocols/forge/remodel/RemodelMover.cc:1364]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/forge/remodel/RemodelMover.cc:1660]: (style) Variable 'original2modified_interval_endpoints' is assigned a value that is never used. [unreadVariable]
[protocols/forge/remodel/RemodelMover.cc:1817]: (style) Variable 'original2modified_interval_endpoints' is assigned a value that is never used. [unreadVariable]
[protocols/forge/remodel/RemodelMover.cc:182]: (performance) Variable 'max_linear_chainbreak_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/forge/remodel/RemodelMover.cc:184]: (performance) Variable 'centroid_loop_mover_str_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/forge/remodel/RemodelMover.cc:186]: (performance) Variable 'dr_cycles_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/forge/remodel/RemodelMover.cc:187]: (performance) Variable 'centroid_sfx_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/forge/remodel/RemodelMover.cc:2003]: (style) Variable 'original2modified_interval_endpoints' is assigned a value that is never used. [unreadVariable]
[protocols/forge/remodel/RemodelMover.cc:2033] -> [protocols/forge/remodel/RemodelMover.cc:2048]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/forge/remodel/RemodelMover.cc:2033] -> [protocols/forge/remodel/RemodelMover.cc:2062]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/forge/remodel/RemodelMover.cc:509] -> [protocols/forge/remodel/RemodelMover.cc:652]: (style) Local variable 'dssp' shadows outer variable [shadowVariable]
[protocols/forge/remodel/RemodelMover.cc:731] -> [protocols/forge/remodel/RemodelMover.cc:972]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/forge/remodel/RemodelMover.cc:731] -> [protocols/forge/remodel/RemodelMover.cc:980]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/forge/remodel/RemodelMover.cc:786] -> [protocols/forge/remodel/RemodelMover.cc:1003]: (style) Local variable 'repeat_number' shadows outer variable [shadowVariable]
[protocols/forge/remodel/RemodelWorkingSet.cc:231]: (style) Condition 'i.sstype=="."' is always true [knownConditionTrueFalse]
[protocols/forge/remodel/RemodelWorkingSet.cc:267]: (style) Condition 'data.blueprint[i].sstype=="."' is always true [knownConditionTrueFalse]
[protocols/forge/remodel/RemodelWorkingSet.cc:436] -> [protocols/forge/remodel/RemodelWorkingSet.cc:456]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/forge/remodel/RemodelWorkingSet.cc:67]: (warning) Member variable 'RemodelWorkingSet::disulfide_cutpoint' is not initialized in the constructor. [uninitMemberVar]
[protocols/forge/remodel/RemodelWorkingSet.cc:67]: (warning) Member variable 'RemodelWorkingSet::insertionEndIndex' is not initialized in the constructor. [uninitMemberVar]
[protocols/forge/remodel/RemodelWorkingSet.cc:67]: (warning) Member variable 'RemodelWorkingSet::insertionStartIndex' is not initialized in the constructor. [uninitMemberVar]
[protocols/forge/remodel/RemodelWorkingSet.cc:67]: (warning) Member variable 'RemodelWorkingSet::safe_root_' is not initialized in the constructor. [uninitMemberVar]
[protocols/forge/remodel/RemodelWorkingSet.cc:77]: (warning) Member variable 'RemodelWorkingSet::disulfide_cutpoint' is not initialized in the constructor. [uninitMemberVar]
[protocols/forge/remodel/RemodelWorkingSet.cc:77]: (warning) Member variable 'RemodelWorkingSet::insertionEndIndex' is not initialized in the constructor. [uninitMemberVar]
[protocols/forge/remodel/RemodelWorkingSet.cc:77]: (warning) Member variable 'RemodelWorkingSet::insertionStartIndex' is not initialized in the constructor. [uninitMemberVar]
[protocols/forge/remodel/RemodelWorkingSet.cc:77]: (warning) Member variable 'RemodelWorkingSet::safe_root_' is not initialized in the constructor. [uninitMemberVar]
[protocols/forge/remodel/RemodelWorkingSet.cc:90]: (performance) Variable 'sequence' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/forge/remodel/RemodelWorkingSet.cc:91]: (performance) Variable 'ss' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/forge/remodel/RemodelWorkingSet.cc:92]: (performance) Variable 'abego' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/forge/remodel/RemodelWorkingSet.cc:93]: (performance) Variable 'LD_types' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/forge/remodel/RemodelWorkingSet.cc:97]: (warning) Member variable 'RemodelWorkingSet::disulfide_cutpoint' is not assigned a value in 'RemodelWorkingSet::operator='. [operatorEqVarError]
[protocols/forge/remodel/RemodelWorkingSet.cc:97]: (warning) Member variable 'RemodelWorkingSet::insertionEndIndex' is not assigned a value in 'RemodelWorkingSet::operator='. [operatorEqVarError]
[protocols/forge/remodel/RemodelWorkingSet.cc:97]: (warning) Member variable 'RemodelWorkingSet::insertionStartIndex' is not assigned a value in 'RemodelWorkingSet::operator='. [operatorEqVarError]
[protocols/forge/remodel/RemodelWorkingSet.cc:97]: (warning) Member variable 'RemodelWorkingSet::safe_root_' is not assigned a value in 'RemodelWorkingSet::operator='. [operatorEqVarError]
[protocols/frag_picker/CommonFragmentComparators.hh:124]: (performance) Variable 'component_id_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/CommonFragmentComparators.hh:57]: (performance) Variable 'scoring_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/ContactCounts.hh:41]: (style) Parameter 'neighbor_pair' can be declared with const [constParameter]
[protocols/frag_picker/ContactCounts.hh:41]: (style) Parameter 'query_pair' can be declared with const [constParameter]
[protocols/frag_picker/ContactCounts.hh:45]: (style) Parameter 'query_pair' can be declared with const [constParameter]
[protocols/frag_picker/ContactCounts.hh:57]: (style) Parameter 'query_pair' can be declared with const [constParameter]
[protocols/frag_picker/Contact.hh:40]: (performance) Variable 'i_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/Contact.hh:41]: (performance) Variable 'j_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/Contact.hh:42]: (performance) Variable 'dist_squared_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/ContactTypes.hh:35] -> [protocols/frag_picker/FragmentPicker.cc:927]: (style) Local variable 'contact_type' shadows outer function [shadowFunction]
[protocols/frag_picker/CS2ndShift.cc:49]: (style) Parameter 'input_data' can be declared with const [constParameter]
[protocols/frag_picker/CS2ndShift.cc:93] -> [protocols/frag_picker/CS2ndShift.cc:95]: (style) Argument 'sequence[seqpos]' to function find is always 71 [constArgument]
[protocols/frag_picker/CSTalosIO.hh:36]: (performance) Variable 'first_residue_index_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/CSTalosIO.hh:40]: (performance) Function parameter 'file_name' should be passed by const reference. [passedByValue]
[protocols/frag_picker/CSTalosIO.hh:41]: (performance) Variable 'first_residue_index_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/DiversifyCrmsdByClustering.cc:39]: (style) Parameter 'dst' can be declared with const [constParameter]
[protocols/frag_picker/DiversifyCrmsdSelector.cc:36]: (style) Parameter 'dst' can be declared with const [constParameter]
[protocols/frag_picker/DiversifyCrmsdSelector.hh:42]: (performance) Variable 'cutoff_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/DiversifyDihedralsSelector.hh:35]: (performance) Variable 'cutoff_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/FragmentCandidate.cc:303]: (style) Variable 'mm' is assigned a value that is never used. [unreadVariable]
[protocols/frag_picker/FragmentPicker.cc:1145]: (performance) Function parameter 'prediction_name' should be passed by const reference. [passedByValue]
[protocols/frag_picker/FragmentPicker.cc:1690]: (style) Parameter 'query_sa' can be declared with const [constParameter]
[protocols/frag_picker/FragmentPicker.cc:1696]: (style) Parameter 'query_phi' can be declared with const [constParameter]
[protocols/frag_picker/FragmentPicker.cc:1702]: (style) Parameter 'query_psi' can be declared with const [constParameter]
[protocols/frag_picker/FragmentPicker.cc:1708]: (style) Parameter 'query_phi_conf' can be declared with const [constParameter]
[protocols/frag_picker/FragmentPicker.cc:1714]: (style) Parameter 'query_psi_conf' can be declared with const [constParameter]
[protocols/frag_picker/FragmentPicker.cc:1797]: (warning) Assert statement calls a function which may have desired side effects: 'size'. [assertWithSideEffect]
[protocols/frag_picker/FragmentPicker.cc:1797]: (warning) Assert statement calls a function which may have desired side effects: 'size_of_query'. [assertWithSideEffect]
[protocols/frag_picker/FragmentPicker.cc:620]: (style) Array index 'thread' is used before limits check. [arrayIndexThenCheck]
[protocols/frag_picker/FragmentPicker.hh:103]: (performance) Function parameter 'fragment_score_manager_type' should be passed by const reference. [passedByValue]
[protocols/frag_picker/FragmentPicker.hh:67]: (performance) Variable 'nFrags_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/FragmentScoreFilter.cc:398]: (performance) Function parameter 'pose' should be passed by const reference. [passedByValue]
[protocols/frag_picker/FragmentScoreFilter.cc:67]: (warning) Member variable 'FragmentScoreFilter::print_out_info_to_pdb_' is not initialized in the constructor. [uninitMemberVar]
[protocols/frag_picker/FragmentSelectingRule.hh:37]: (performance) Variable 'frags_per_pos_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/JCouplingIO.hh:35]: (performance) Function parameter 'file_name' should be passed by const reference. [passedByValue]
[protocols/frag_picker/LazySortedVector1.hh:31]: (performance) Variable 'max_capacity_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/LazySortedVector1.hh:33]: (performance) Variable 'sorted_capacity_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/LazySortedVector1.hh:34]: (performance) Variable 'last_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/nonlocal/NonlocalFrags.cc:324] -> [protocols/frag_picker/nonlocal/NonlocalFrags.cc:529]: (style) Local variable 'scorestr' shadows outer variable [shadowVariable]
[protocols/frag_picker/nonlocal/NonlocalPair.hh:51]: (style) Parameter 'contacts' can be declared with const [constParameter]
[protocols/frag_picker/nonlocal/NonlocalPair.hh:52]: (performance) Variable 'query_position_i_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/nonlocal/NonlocalPair.hh:53]: (performance) Variable 'query_position_j_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/nonlocal/NonlocalPair.hh:54]: (performance) Variable 'candidate_i_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/nonlocal/NonlocalPair.hh:55]: (performance) Variable 'candidate_j_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/nonlocal/NonlocalPair.hh:56]: (performance) Variable 'candidate_i_rank_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/nonlocal/NonlocalPair.hh:57]: (performance) Variable 'candidate_j_rank_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/nonlocal/NonlocalPair.hh:58]: (performance) Variable 'contacts_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/nonlocal/NonlocalPair.hh:98]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[protocols/frag_picker/PhiPsiTalosIO.hh:37]: (performance) Variable 'first_residue_index_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/PhiPsiTalosIO.hh:40]: (performance) Function parameter 'file_name' should be passed by const reference. [passedByValue]
[protocols/frag_picker/PhiPsiTalosIO.hh:41]: (performance) Variable 'first_residue_index_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/quota/ABEGO_SS_Pool.cc:46]: (performance) Function parameter 'pool_name' should be passed by const reference. [passedByValue]
[protocols/frag_picker/quota/ABEGO_SS_Pool.cc:51]: (performance) Variable 'ss_abego_types_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/quota/ABEGO_SS_Pool.cc:53]: (performance) Variable 'buffer_factor_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/quota/QuotaConfig.hh:50]: (performance) Function parameter 'pool_name' should be passed by const reference. [passedByValue]
[protocols/frag_picker/quota/QuotaConfig.hh:62]: (style) Parameter 'pool_name' can be declared with const [constParameter]
[protocols/frag_picker/quota/SecondaryStructurePool.cc:43]: (performance) Function parameter 'pool_name' should be passed by const reference. [passedByValue]
[protocols/frag_picker/scores/AdaptiveScoreHistogram.cc:34]: (performance) Variable 'bin_size_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/AmbigCSScore.cc:218]: (style) Variable 'totalCount' is assigned a value that is never used. [unreadVariable]
[protocols/frag_picker/scores/AmbigCSScore.cc:232]: (style) Variable 'totalCount' is assigned a value that is never used. [unreadVariable]
[protocols/frag_picker/scores/AtomBasedConstraintsScore.cc:105]: (style) Unused variable: it [unusedVariable]
[protocols/frag_picker/scores/AtomBasedConstraintsScore.cc:43]: (performance) Function parameter 'score_name' should be passed by const reference. [passedByValue]
[protocols/frag_picker/scores/AtomBasedConstraintsScore.cc:46]: (performance) Variable 'query_size_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/AtomBasedConstraintsScore.cc:59]: (performance) Function parameter 'score_name' should be passed by const reference. [passedByValue]
[protocols/frag_picker/scores/AtomBasedConstraintsScore.cc:62]: (performance) Variable 'query_size_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/AtomPairConstraintsScore.cc:56]: (performance) Function parameter 'constraints_file_name' should be passed by const reference. [passedByValue]
[protocols/frag_picker/scores/AtomPairConstraintsScore.cc:74]: (performance) Function parameter 'constraints_file_name' should be passed by const reference. [passedByValue]
[protocols/frag_picker/scores/AtomPairConstraintsScore.hh:64]: (performance) Variable 'offset_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/AtomPairConstraintsScore.hh:65]: (performance) Variable 'func_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/AtomPairConstraintsScore.hh:66]: (performance) Variable 'first_atom_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/AtomPairConstraintsScore.hh:67]: (performance) Variable 'second_atom_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/CachingScoringMethod.hh:48]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[protocols/frag_picker/scores/CSScore.cc:213]: (style) Variable 'totalCount' is assigned a value that is never used. [unreadVariable]
[protocols/frag_picker/scores/CSScore.cc:227]: (style) Variable 'totalCount' is assigned a value that is never used. [unreadVariable]
[protocols/frag_picker/scores/FourAtomsConstraintData.cc:28]: (performance) Variable 'func_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/FourAtomsConstraintData.cc:29]: (performance) Variable 'first_atom_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/FourAtomsConstraintData.cc:30]: (performance) Variable 'second_atom_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/FourAtomsConstraintData.cc:31]: (performance) Variable 'third_atom_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/FourAtomsConstraintData.cc:32]: (performance) Variable 'fourth_atom_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/FourAtomsConstraintData.cc:33]: (performance) Variable 'second_offset_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/FourAtomsConstraintData.cc:34]: (performance) Variable 'third_offset_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/FourAtomsConstraintData.cc:35]: (performance) Variable 'fourth_offset_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/FragmentChunkCrms.cc:127]: (style) Parameter 'coords' can be declared with const [constParameter]
[protocols/frag_picker/scores/FragmentScoreManager.cc:303]: (performance) Variable 'default_precision_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/FragmentScoreManager.cc:304]: (performance) Variable 'default_width_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/FragmentScoreManager.hh:81]: (performance) Function parameter 'score_name' should be passed by const reference. [passedByValue]
[protocols/frag_picker/scores/FragmentScoringMethod.hh:38]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[protocols/frag_picker/scores/FragmentScoringMethod.hh:98]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[protocols/frag_picker/scores/GunnCost.cc:139]: (style) Expression 'log(1 + x)' can be replaced by 'log1p(x)' to avoid loss of precision. [unpreciseMathCall]
[protocols/frag_picker/scores/GunnCost.cc:140]: (style) Expression 'log(1 + x)' can be replaced by 'log1p(x)' to avoid loss of precision. [unpreciseMathCall]
[protocols/frag_picker/scores/GunnCost.cc:141]: (style) Expression 'log(1 + x)' can be replaced by 'log1p(x)' to avoid loss of precision. [unpreciseMathCall]
[protocols/frag_picker/scores/GunnCost.hh:40]: (performance) Variable 'q1' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/GunnCost.hh:41]: (performance) Variable 'q2' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/GunnCost.hh:42]: (performance) Variable 'q3' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/GunnCost.hh:43]: (performance) Variable 'q4' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/GunnCost.hh:44]: (performance) Variable 'q5' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/GunnCost.hh:45]: (performance) Variable 'q6' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/PartialSecondarySimilarity.cc:147]: (performance) Variable 'query_len_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/PartialSecondarySimilarity.cc:44]: (style) Variable 'tmp' can be declared with const [constVariable]
[protocols/frag_picker/scores/Phi.hh:43]: (style) Parameter 'query_phi_prediction_conf' can be declared with const [constParameter]
[protocols/frag_picker/scores/PhiPsiRmsd.cc:176]: (style) Variable 'stmp' is assigned a value that is never used. [unreadVariable]
[protocols/frag_picker/scores/ProfileScoreBlosum62.cc:84]: (style) Variable 'tmp' can be declared with const [constVariable]
[protocols/frag_picker/scores/ProfileScoreDistWeight.hh:52]: (performance) Function parameter 'query_sequence' should be passed by const reference. [passedByValue]
[protocols/frag_picker/scores/ProfileScoreL1.cc:79]: (style) Variable 'tmp' can be declared with const [constVariable]
[protocols/frag_picker/scores/ProfileScoreStructL1.cc:75]: (style) Variable 'tmp' can be declared with const [constVariable]
[protocols/frag_picker/scores/ProfileScoreSubMatrix.cc:85]: (style) Variable 'tmp' can be declared with const [constVariable]
[protocols/frag_picker/scores/Psi.hh:43]: (style) Parameter 'query_psi_prediction_conf' can be declared with const [constParameter]
[protocols/frag_picker/scores/RamaScore.cc:194]: (style) Variable 'tmp' can be declared with const [constVariable]
[protocols/frag_picker/scores/RamaScore.cc:96]: (error) When i==query_.size(), query_[i] is out of bounds. [stlOutOfBounds]
[protocols/frag_picker/scores/ScoreEValuator.hh:42]: (performance) Variable 'max_rand_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/SecondaryIdentity.hh:45]: (performance) Function parameter 'prediction_name' should be passed by const reference. [passedByValue]
[protocols/frag_picker/scores/SecondarySimilarity.cc:135]: (performance) Variable 'query_len_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/SecondarySimilarity.cc:136]: (performance) Variable 'query_ss_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/SecondarySimilarity.cc:73]: (style) Variable 'tmp' can be declared with const [constVariable]
[protocols/frag_picker/scores/TalosSSSimilarity.cc:158]: (performance) Variable 'query_len_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/TalosSSSimilarity.cc:159]: (performance) Variable 'query_ss_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/TalosSSSimilarity.cc:161]: (performance) Variable 'H_mult_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/TalosSSSimilarity.cc:162]: (performance) Variable 'E_mult_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/TalosSSSimilarity.cc:163]: (performance) Variable 'L_mult_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/TalosSSSimilarity.cc:93]: (style) Variable 'tmp' can be declared with const [constVariable]
[protocols/frag_picker/VallChunk.cc:38]: (performance) Variable 'sequence_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/VallChunk.cc:39]: (performance) Variable 'my_provider_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/VallProvider.hh:42]: (performance) Variable 'cached_profile_id_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/VallProvider.hh:43]: (performance) Variable 'cached_pose_id_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/VallProvider.hh:44]: (performance) Variable 'largest_chunk_size_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frags/heap.cc:320]: (style) Variable 'coheap(indx)' is assigned a value that is never used. [unreadVariable]
[protocols/frags/heap.cc:349]: (style) Parameter 'index_in' can be declared with const [constParameter]
[protocols/frags/heap.cc:374]: (style) Variable 'heap(indx)' is assigned a value that is never used. [unreadVariable]
[protocols/frags/heap.cc:93]: (style) Variable 'heap(-2)' is assigned a value that is never used. [unreadVariable]
[protocols/frags/RMSVallData.hh:149] -> [protocols/frags/RMSVallData.hh:102]: (style) Local variable 'phi' shadows outer function [shadowFunction]
[protocols/frags/RMSVallData.hh:149] -> [protocols/frags/RMSVallData.hh:206]: (style) Local variable 'phi' shadows outer function [shadowFunction]
[protocols/frags/RMSVallData.hh:150] -> [protocols/frags/RMSVallData.hh:102]: (style) Local variable 'psi' shadows outer function [shadowFunction]
[protocols/frags/RMSVallData.hh:150] -> [protocols/frags/RMSVallData.hh:207]: (style) Local variable 'psi' shadows outer function [shadowFunction]
[protocols/frags/RMSVallData.hh:151] -> [protocols/frags/RMSVallData.hh:102]: (style) Local variable 'omega' shadows outer function [shadowFunction]
[protocols/frags/RMSVallData.hh:151] -> [protocols/frags/RMSVallData.hh:208]: (style) Local variable 'omega' shadows outer function [shadowFunction]
[protocols/generalized_kinematic_closure/perturber/GeneralizedKICperturber.cc:137]: (style) Parameter 'effect' can be declared with const [constParameter]
[protocols/generalized_kinematic_closure/selector/GeneralizedKICselector.cc:279]: (style) Variable 'fullpose' is assigned a value that is never used. [unreadVariable]
[protocols/generalized_kinematic_closure/selector/GeneralizedKICselector.cc:280]: (style) Variable 'looppose' is assigned a value that is never used. [unreadVariable]
[protocols/generalized_kinematic_closure/selector/GeneralizedKICselector.cc:309] -> [protocols/generalized_kinematic_closure/selector/GeneralizedKICselector.cc:325]: (style) Condition '!breaknow' is always true [knownConditionTrueFalse]
[protocols/generalized_kinematic_closure/selector/GeneralizedKICselector.cc:309]: (style) Condition '!breaknow' is always true [knownConditionTrueFalse]
[protocols/generalized_kinematic_closure/selector/GeneralizedKICselector.cc:359]: (style) Variable 'rmsd_current' is assigned a value that is never used. [unreadVariable]
[protocols/generalized_kinematic_closure/selector/GeneralizedKICselector.cc:434]: (style) Variable 'dtor_current' is assigned a value that is never used. [unreadVariable]
[protocols/genetic_algorithm/GeneticAlgorithm.cc:463]: (performance) Function parameter 'suffix' should be passed by const reference. [passedByValue]
[protocols/genetic_algorithm/GeneticAlgorithm.cc:65] -> [protocols/genetic_algorithm/GeneticAlgorithm.cc:635] -> [protocols/genetic_algorithm/GeneticAlgorithm.hh:97]: (warning) Virtual function 'generations_checkpoint_filename' is called from destructor '~GeneticAlgorithmBase()' at line 65. Dynamic binding is not used. [virtualCallInConstructor]
[protocols/grafting/AnchoredGraftMover.cc:253]: (performance) Function parameter 'mintype' should be passed by const reference. [passedByValue]
[protocols/grafting/GraftMoverBase.cc:66]: (performance) Function parameter 'mover_name' should be passed by const reference. [passedByValue]
[protocols/grafting/simple_movers/InsertPoseIntoPoseMover.cc:53]: (performance) Variable 'src_pose_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/grafting/util.cc:193]: (style) Variable 'original_scaffold_tree' is assigned a value that is never used. [unreadVariable]
[protocols/grafting/util.cc:507]: (style) Parameter 'loops' can be declared with const [constParameter]
[protocols/hbnet/HBNet.cc:1180]: (style) Variable 'copy' is assigned a value that is never used. [unreadVariable]
[protocols/hbnet/HBNet.cc:1197]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[protocols/hbnet/HBNet.cc:213]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[protocols/hbnet/HBNet.cc:2303] -> [protocols/hbnet/HBNet.cc:2413]: (style) Local variable 'count' shadows outer variable [shadowVariable]
[protocols/hbnet/HBNet.cc:2584]: (style) Variable 'current_out_tag' is assigned a value that is never used. [unreadVariable]
[protocols/hbnet/HBNet.cc:2879] -> [protocols/hbnet/HBNet.cc:2984]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/hbnet/HBNet.cc:4056]: (style) Parameter 'current_state' can be declared with const [constParameter]
[protocols/hbnet/HBNet.cc:721]: (style) Variable 'instance_rec_call_cnt' is assigned a value that is never used. [unreadVariable]
[protocols/hbnet/HBNet.hh:369]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[protocols/hbnet/HBNet.hh:427]: (performance) Function parameter 'start_resnums' should be passed by const reference. [passedByValue]
[protocols/hbnet/HBNet.hh:428]: (performance) Function parameter 'start_resnums' should be passed by const reference. [passedByValue]
[protocols/hbnet/HBNetScore.hh:38] -> [protocols/hbnet/HBNetScore.hh:51]: (style) Local variable 'clone' shadows outer function [shadowFunction]
[protocols/hbnet/HBNetStapleInterface.cc:142]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[protocols/hbnet/HBNetStapleInterface.cc:769] -> [protocols/hbnet/HBNetStapleInterface.cc:870]: (style) Local variable 'criteria_met' shadows outer variable [shadowVariable]
[protocols/hbnet/HBNetStapleInterface.cc:770] -> [protocols/hbnet/HBNetStapleInterface.cc:871]: (style) Local variable 'span_criteria_met' shadows outer variable [shadowVariable]
[protocols/hbnet/HBNetStapleInterface.cc:772] -> [protocols/hbnet/HBNetStapleInterface.cc:873]: (style) Local variable 'satisfied_criteria_met' shadows outer variable [shadowVariable]
[protocols/hbnet/HBNet_util.cc:267]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/helical_bundle/BundleGridSampler.cc:513] -> [protocols/helical_bundle/BundleGridSampler.cc:548]: (style) Local variable 'resname_string' shadows outer variable [shadowVariable]
[protocols/helical_bundle/BundleGridSampler.cc:514] -> [protocols/helical_bundle/BundleGridSampler.cc:549]: (style) Local variable 'resname_vect' shadows outer variable [shadowVariable]
[protocols/helical_bundle/BundleParametrizationCalculator.cc:282] -> [protocols/helical_bundle/BundleParametrizationCalculator.cc:314]: (warning) Identical condition and return expression 'failed', return value is always false [identicalConditionAfterEarlyExit]
[protocols/helical_bundle/MakeBundle.cc:72]: (performance) Variable 'default_residue_name_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/helical_bundle/parameters/BundleParametersSet.cc:88]: (warning) Assert statement calls a function which may have desired side effects: 'parameters'. [assertWithSideEffect]
[protocols/helical_bundle/parameters/OmegaBundleParameter.cc:203]: (style) Parameter 'xsd' can be declared with const [constParameter]
[protocols/helical_bundle/util.cc:66]: (style) Parameter 'attlist' can be declared with const [constParameter]
[protocols/helical_bundle/util.cc:77]: (style) Parameter 'attlist' can be declared with const [constParameter]
[protocols/helical_bundle/util.cc:95]: (style) Parameter 'attlist' can be declared with const [constParameter]
[protocols/helix_capper/HelixNCapperMover.cc:60]: (performance) Function parameter 'p' should be passed by const reference. [passedByValue]
[protocols/helix_capper/HelixNCapperMover.cc:62]: (performance) Variable 'start_pose_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/helix_capper/HelixNCapperMover.cc:68]: (style) Parameter 'posey' can be declared with const [constParameter]
[protocols/hotspot_hashing/HotspotStubSet.cc:1265] -> [protocols/hotspot_hashing/HotspotStubSet.cc:1309]: (style) Local variable 'allowed_aas' shadows outer variable [shadowVariable]
[protocols/hotspot_hashing/HotspotStubSet.cc:1438] -> [protocols/hotspot_hashing/HotspotStubSet.cc:1482]: (style) Local variable 'allowed_aas' shadows outer variable [shadowVariable]
[protocols/hotspot_hashing/HotspotStubSet.cc:247] -> [protocols/hotspot_hashing/HotspotStubSet.cc:333]: (style) Local variable 'it' shadows outer variable [shadowVariable]
[protocols/hotspot_hashing/HotspotStubSet.cc:247] -> [protocols/hotspot_hashing/HotspotStubSet.cc:352]: (style) Local variable 'it' shadows outer variable [shadowVariable]
[protocols/hotspot_hashing/HotspotStubSet.cc:333] -> [protocols/hotspot_hashing/HotspotStubSet.cc:338]: (style) Local variable 'it' shadows outer variable [shadowVariable]
[protocols/hotspot_hashing/HotspotStubSet.cc:703]: (style) Variable 'pose' is assigned a value that is never used. [unreadVariable]
[protocols/hotspot_hashing/HotspotStubSet.cc:903]: (style) Variable 'temp_status' is assigned a value that is never used. [unreadVariable]
[protocols/hotspot_hashing/HotspotStubSet.cc:948] -> [protocols/hotspot_hashing/HotspotStubSet.cc:949]: (style) Variable 'hs_it' is reassigned a value before the old one has been used. [redundantAssignment]
[protocols/hotspot_hashing/movers/PlaceSurfaceProbe.cc:72]: (performance) Function parameter 'residue_name' should be passed by const reference. [passedByValue]
[protocols/hotspot_hashing/movers/PlaceSurfaceProbe.hh:52] -> [protocols/hotspot_hashing/movers/PlaceSurfaceProbe.cc:72]: (warning) Function 'PlaceSurfaceProbe' argument order different: declaration 'residue_name, search_density, x_angle_sampling, y_angle_sampling, refinement_distance_sampling, refinement_distance, refinement_translation_sampling, target_residue, surface_selection, search_partition, total_search_partition' definition 'residue_name, search_density, coarse_angle_sampling, coarse_sampling, refinement_distance, refinement_angle_sampling, refinement_sampling, target_residue, , search_partition, total_search_partition' [funcArgOrderDifferent]
[protocols/hotspot_hashing/SearchPattern.hh:164]: (style) Variable 'y' is assigned a value that is never used. [unreadVariable]
[protocols/hotspot_hashing/SearchPattern.hh:165]: (style) Variable 'z' is assigned a value that is never used. [unreadVariable]
[protocols/hybridization/BackboneTorsionPerturbation.cc:132]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/hybridization/BackboneTorsionSampler.cc:227] -> [protocols/hybridization/BackboneTorsionSampler.cc:297]: (style) Local variable 'i_nest' shadows outer variable [shadowVariable]
[protocols/hybridization/CartesianHybridize.cc:251]: (style) Parameter 'frag' can be declared with const [constParameter]
[protocols/hybridization/CartesianHybridize.cc:331]: (style) Parameter 'frame' can be declared with const [constParameter]
[protocols/hybridization/ChunkTrialMover.cc:160]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/hybridization/ChunkTrialMover.hh:79]: (performance) Function parameter 'template_indices_in' should be passed by const reference. [passedByValue]
[protocols/hybridization/DDomainParse.cc:156]: (style) Parameter 'ipdom' can be declared with const [constParameter]
[protocols/hybridization/DDomainParse.cc:238]: (style) Variable 'dr' is assigned a value that is never used. [unreadVariable]
[protocols/hybridization/DDomainParse.cc:53]: (style) Parameter 'resect' can be declared with const [constParameter]
[protocols/hybridization/DDomainParse.hh:34]: (performance) Variable 'pcut_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/hybridization/DDomainParse.hh:35]: (performance) Variable 'hcut_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/hybridization/DDomainParse.hh:36]: (performance) Variable 'length_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/hybridization/DDomainParse.hh:40]: (performance) Variable 'pcut_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/hybridization/DDomainParse.hh:41]: (performance) Variable 'hcut_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/hybridization/DDomainParse.hh:42]: (performance) Variable 'length_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/hybridization/DomainAssembly.cc:118] -> [protocols/hybridization/DomainAssembly.cc:131]: (style) Local variable 'ipose' shadows outer variable [shadowVariable]
[protocols/hybridization/DomainAssembly.hh:67]: (performance) Variable 'pose1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/hybridization/DomainAssembly.hh:68]: (performance) Variable 'pose2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/hybridization/DomainAssembly.hh:69]: (performance) Variable 'scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/hybridization/FoldTreeHybridize.cc:1309]: (style) Variable 'gdtmm' is assigned a value that is never used. [unreadVariable]
[protocols/hybridization/FoldTreeHybridize.cc:531]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/hybridization/FoldTreeHybridize.cc:676]: (style) Variable 'score3' is assigned a value that is never used. [unreadVariable]
[protocols/hybridization/FoldTreeHybridize.cc:820]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/hybridization/FoldTreeHybridize.cc:833] -> [protocols/hybridization/FoldTreeHybridize.cc:918]: (style) Local variable 'it' shadows outer variable [shadowVariable]
[protocols/hybridization/FoldTreeHybridize.hh:122]: (performance) Function parameter 'pairings_file_in' should be passed by const reference. [passedByValue]
[protocols/hybridization/FoldTreeHybridize.hh:95]: (performance) Function parameter 'cst_file_in' should be passed by const reference. [passedByValue]
[protocols/hybridization/FoldTreeHybridize.hh:96]: (style) Parameter 'cst_in' can be declared with const [constParameter]
[protocols/hybridization/FragmentBiasAssigner.cc:108]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/hybridization/FragmentBiasAssigner.cc:236]: (style) Unused variable: scores [unusedVariable]
[protocols/hybridization/FragmentBiasAssigner.cc:351] -> [protocols/hybridization/FragmentBiasAssigner.cc:357]: (style) Variable 'fragProbs_assigned_' is reassigned a value before the old one has been used. [redundantAssignment]
[protocols/hybridization/FragmentBiasAssigner.cc:538]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/hybridization/FragmentBiasAssigner.cc:95] -> [protocols/hybridization/FragmentBiasAssigner.cc:99]: (style) Variable 'cumulative_' is reassigned a value before the old one has been used. [redundantAssignment]
[protocols/hybridization/HybridizeFoldtreeDynamic.cc:72] -> [protocols/hybridization/HybridizeFoldtreeDynamic.cc:110]: (style) The expression 'cut_point_decision == "middle_L"' is always true because 'cut_point_decision' and '"middle_L"' represent the same value. [knownConditionTrueFalse]
[protocols/hybridization/HybridizeProtocol.cc:210]: (warning) Member variable 'HybridizeProtocol::filter_templates_' is not initialized in the constructor. [uninitMemberVar]
[protocols/hybridization/HybridizeProtocol.cc:210]: (warning) Member variable 'HybridizeProtocol::include_loop_ss_chunks_' is not initialized in the constructor. [uninitMemberVar]
[protocols/hybridization/HybridizeProtocol.cc:218]: (style) Parameter 'cen_cst_in' can be declared with const [constParameter]
[protocols/hybridization/HybridizeProtocol.cc:219]: (style) Parameter 'fa_cst_in' can be declared with const [constParameter]
[protocols/hybridization/HybridizeProtocol.cc:877]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[protocols/hybridization/MRMover.cc:461] -> [protocols/hybridization/MRMover.cc:551]: (style) Local variable 'f' shadows outer variable [shadowVariable]
[protocols/hybridization/MRMover.cc:461] -> [protocols/hybridization/MRMover.cc:569]: (style) Local variable 'f' shadows outer variable [shadowVariable]
[protocols/hybridization/MRMover.hh:70]: (performance) Function parameter 'newval' should be passed by const reference. [passedByValue]
[protocols/hybridization/TemplateHistory.cc:42]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/hybridization/TMalign.cc:1015]: (style) The scope of the variable 'j' can be reduced. [variableScope]
[protocols/hybridization/TMalign.cc:1041]: (style) The scope of the variable 'i' can be reduced. [variableScope]
[protocols/hybridization/TMalign.cc:1326]: (style) The scope of the variable 'j1' can be reduced. [variableScope]
[protocols/hybridization/TMalign.cc:1326]: (style) The scope of the variable 'j2' can be reduced. [variableScope]
[protocols/hybridization/TMalign.cc:1326]: (style) The scope of the variable 'j3' can be reduced. [variableScope]
[protocols/hybridization/TMalign.cc:1326]: (style) The scope of the variable 'j4' can be reduced. [variableScope]
[protocols/hybridization/TMalign.cc:1326]: (style) The scope of the variable 'j5' can be reduced. [variableScope]
[protocols/hybridization/TMalign.cc:1462]: (style) The scope of the variable 'i' can be reduced. [variableScope]
[protocols/hybridization/TMalign.cc:1496]: (style) The scope of the variable 'i' can be reduced. [variableScope]
[protocols/hybridization/TMalign.cc:1532]: (style) Parameter 'y2x0' can be declared with const [constParameter]
[protocols/hybridization/TMalign.cc:1547]: (style) The scope of the variable 'start' can be reduced. [variableScope]
[protocols/hybridization/TMalign.cc:2025] -> [protocols/hybridization/TMalign.cc:2047]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/hybridization/TMalign.cc:2025] -> [protocols/hybridization/TMalign.cc:2057]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/hybridization/TMalign.cc:2025] -> [protocols/hybridization/TMalign.cc:2065]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/hybridization/TMalign.cc:2025] -> [protocols/hybridization/TMalign.cc:2077]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/hybridization/TMalign.cc:2025] -> [protocols/hybridization/TMalign.cc:2085]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/hybridization/TMalign.cc:434]: (style) Parameter 'xx' can be declared with const [constParameter]
[protocols/hybridization/TMalign.cc:500]: (style) The scope of the variable 'k' can be reduced. [variableScope]
[protocols/hybridization/TMalign.cc:500]: (style) The scope of the variable 'l' can be reduced. [variableScope]
[protocols/hybridization/TMalign.cc:500]: (style) The scope of the variable 'm1' can be reduced. [variableScope]
[protocols/hybridization/TMalign.cc:509]: (style) The scope of the variable 'a_failed' can be reduced. [variableScope]
[protocols/hybridization/TMalign.cc:509]: (style) The scope of the variable 'b_failed' can be reduced. [variableScope]
[protocols/hybridization/TMalign.cc:61] -> [protocols/hybridization/TMalign.cc:881]: (style) Local variable 'score' shadows outer variable [shadowVariable]
[protocols/hybridization/TMalign.cc:72] -> [protocols/hybridization/TMalign.cc:1383]: (style) Local variable 't' shadows outer variable [shadowVariable]
[protocols/hybridization/TMalign.cc:72] -> [protocols/hybridization/TMalign.cc:1454]: (style) Local variable 't' shadows outer variable [shadowVariable]
[protocols/hybridization/TMalign.cc:72] -> [protocols/hybridization/TMalign.cc:1488]: (style) Local variable 't' shadows outer variable [shadowVariable]
[protocols/hybridization/TMalign.cc:72] -> [protocols/hybridization/TMalign.cc:885]: (style) Local variable 't' shadows outer variable [shadowVariable]
[protocols/hybridization/TMalign.cc:73] -> [protocols/hybridization/TMalign.cc:1384]: (style) Local variable 'u' shadows outer variable [shadowVariable]
[protocols/hybridization/TMalign.cc:73] -> [protocols/hybridization/TMalign.cc:1455]: (style) Local variable 'u' shadows outer variable [shadowVariable]
[protocols/hybridization/TMalign.cc:73] -> [protocols/hybridization/TMalign.cc:1489]: (style) Local variable 'u' shadows outer variable [shadowVariable]
[protocols/hybridization/TMalign.cc:73] -> [protocols/hybridization/TMalign.cc:886]: (style) Local variable 'u' shadows outer variable [shadowVariable]
[protocols/hybridization/TMalign.cc:89]: (performance) Function parameter 'sErrorString' should be passed by const reference. [passedByValue]
[protocols/hybridization/TMalign.cc:913]: (style) The scope of the variable 'L_frag' can be reduced. [variableScope]
[protocols/hybridization/TMalign.cc:914]: (style) The scope of the variable 'iL_max' can be reduced. [variableScope]
[protocols/hybridization/TMalign.cc:989]: (style) Condition 'i>=iL_max' is always true [knownConditionTrueFalse]
[protocols/hybridization/util.cc:819]: (style) Parameter 'native' can be declared with const [constParameter]
[protocols/hybridization/util.cc:819]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/hydrate/Hydrate.cc:367]: (style) Variable 'hyd_to.score_fxn_' is assigned a value that is never used. [unreadVariable]
[protocols/hydrate/Hydrate.cc:368]: (style) Variable 'hyd_to.main_task_factory_' is assigned a value that is never used. [unreadVariable]
[protocols/hydrate/hydrate_functions.cc:166]: (style) Argument '2*sec_resolution*sec_resolution+sec_resolution+1' to function neighbor_sections is always 106 [constArgument]
[protocols/indel/IndelOptimizationMover.hh:101]: (performance) Function parameter 'i' should be passed by const reference. [passedByValue]
[protocols/indel/IndelOptimizationMover.hh:104]: (performance) Function parameter 'i' should be passed by const reference. [passedByValue]
[protocols/indel/IndelOptimizationMover.hh:107]: (performance) Function parameter 'i' should be passed by const reference. [passedByValue]
[protocols/indel/IndelOptimizationMover.hh:98]: (performance) Function parameter 'i' should be passed by const reference. [passedByValue]
[protocols/indexed_structure_store/BinaryFragmentStoreBackend.cc:43]: (performance) Function parameter 'target_filename' should be passed by const reference. [passedByValue]
[protocols/indexed_structure_store/BinaryFragmentStoreBackend.cc:48]: (performance) Function parameter 'store_name' should be passed by const reference. [passedByValue]
[protocols/indexed_structure_store/DirectSegmentLookup.cc:110]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/indexed_structure_store/filters/FragmentLookupFilter.cc:159]: (style) Variable 'num_failed_matches' is assigned a value that is never used. [unreadVariable]
[protocols/indexed_structure_store/filters/FragmentLookupFilter.cc:166]: (style) Variable 'num_failed_matches' is assigned a value that is never used. [unreadVariable]
[protocols/indexed_structure_store/filters/FragmentLookupFilter.cc:62]: (performance) Function parameter 'lookup_name' should be passed by const reference. [passedByValue]
[protocols/indexed_structure_store/filters/FragmentLookupFilter.cc:73]: (performance) Function parameter 'lookup_name' should be passed by const reference. [passedByValue]
[protocols/indexed_structure_store/filters/FragmentLookupFilter.cc:74]: (performance) Function parameter 'store_path' should be passed by const reference. [passedByValue]
[protocols/indexed_structure_store/filters/FragmentLookupFilter.cc:87]: (warning) Member variable 'FragmentLookupFilter::lookup_mode_' is not initialized in the constructor. [uninitMemberVar]
[protocols/indexed_structure_store/FragmentLookup.hh:99]: (performance) Function parameter 'subset' should be passed by const reference. [passedByValue]
[protocols/indexed_structure_store/FragmentStore.hh:83]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[protocols/indexed_structure_store/FragmentStore.hh:86]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[protocols/indexed_structure_store/FragmentStore.hh:87]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[protocols/indexed_structure_store/FragmentStoreManager.cc:51]: (performance) Function parameter 'lookup_name' should be passed by const reference. [passedByValue]
[protocols/indexed_structure_store/FragmentStoreManager.cc:71] -> [protocols/indexed_structure_store/FragmentStoreManager.cc:86]: (style) Local variable 'target_store' shadows outer variable [shadowVariable]
[protocols/indexed_structure_store/movers/DirectSegmentLookupMover.cc:103]: (style) Parameter 'source_pose' can be declared with const [constParameter]
[protocols/indexed_structure_store/movers/DirectSegmentLookupMover.cc:177]: (performance) Function parameter 'path' should be passed by const reference. [passedByValue]
[protocols/indexed_structure_store/movers/DirectSegmentLookupMover.cc:234] -> [protocols/indexed_structure_store/movers/DirectSegmentLookupMover.cc:235]: (style) Variable 'config.max_insertion_length' is reassigned a value before the old one has been used. [redundantAssignment]
[protocols/indexed_structure_store/movers/DirectSegmentLookupMover.hh:53]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[protocols/indexed_structure_store/movers/DirectSegmentLookupMover.hh:59]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[protocols/indexed_structure_store/movers/DirectSegmentLookupMover.hh:62]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[protocols/indexed_structure_store/movers/DirectSegmentLookupMover.hh:65]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[protocols/indexed_structure_store/movers/SegmentSequenceProfileMover.cc:194]: (performance) Function parameter 'profile' should be passed by const reference. [passedByValue]
[protocols/indexed_structure_store/movers/SegmentSequenceProfileMover.cc:216]: (performance) Function parameter 'path' should be passed by const reference. [passedByValue]
[protocols/indexed_structure_store/movers/SegmentSequenceProfileMover.hh:62]: (performance) Function parameter 'new_output_lookup_count' should be passed by const reference. [passedByValue]
[protocols/indexed_structure_store/movers/SegmentSequenceProfileMover.hh:65]: (performance) Function parameter 'new_output_pssm_filename' should be passed by const reference. [passedByValue]
[protocols/indexed_structure_store/movers/SegmentSequenceProfileMover.hh:74]: (performance) Function parameter 'new_scaling' should be passed by const reference. [passedByValue]
[protocols/indexed_structure_store/pose_utility.cc:101]: (style) Parameter 'n' can be declared with const [constParameter]
[protocols/indexed_structure_store/pose_utility.cc:256]: (performance) Function parameter 'residue_type' should be passed by const reference. [passedByValue]
[protocols/indexed_structure_store/pose_utility.hh:52]: (performance) Function parameter 'residue_type' should be passed by const reference. [passedByValue]
[protocols/indexed_structure_store/search/QueryDatabase.cc:79]: (style) The scope of the variable 'chain_end' can be reduced. [variableScope]
[protocols/indexed_structure_store/search/QueryDatabase.cc:79]: (style) Variable 'chain_end' is assigned a value that is never used. [unreadVariable]
[protocols/indexed_structure_store/SSHashedFragmentStore.cc:121]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[protocols/indexed_structure_store/SSHashedFragmentStore.cc:283]: (performance) Function parameter 'frag_ss' should be passed by const reference. [passedByValue]
[protocols/indexed_structure_store/SSHashedFragmentStore.cc:87]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[protocols/indexed_structure_store/StructureStore.cc:71]: (performance) Function parameter 'a' should be passed by const reference. [passedByValue]
[protocols/indexed_structure_store/StructureStore.cc:71]: (performance) Function parameter 'b' should be passed by const reference. [passedByValue]
[protocols/jd2/archive/ArchiveBase.cc:270]: (performance) Function parameter 'suffix' should be passed by const reference. [passedByValue]
[protocols/jd2/archive/ArchiveBase.cc:328]: (error) Uninitialized variable: value [uninitvar]
[protocols/jd2/archive/ArchiveBase.cc:329]: (error) Uninitialized variable: value [uninitvar]
[protocols/jd2/archive/ArchiveManager.cc:192]: (style) Parameter 'batch' can be declared with const [constParameter]
[protocols/jd2/archive/ArchiveManager.cc:196]: (style) Parameter 'batch' can be declared with const [constParameter]
[protocols/jd2/archive/ArchiveManager.cc:342]: (style) The scope of the variable 'flag' can be reduced. [variableScope]
[protocols/jd2/archive/ArchiveManager.cc:364]: (style) Condition 'flag' is always true [knownConditionTrueFalse]
[protocols/jd2/archive/ArchiveManager.cc:783]: (style) Parameter 'new_batch' can be declared with const [constParameter]
[protocols/jd2/archive/ArchiveManager.hh:233] -> [protocols/jd2/archive/ArchiveManager.hh:299]: (warning) The class 'ArchiveManager' defines member variable with name 'options_registered_' also defined in its parent class 'BaseArchiveManager'. [duplInheritedMember]
[protocols/jd2/archive/VarianceStatisticsArchive.cc:38]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[protocols/jd2/BatchJobInputter.cc:41]: (performance) Function parameter 'batch1' should be passed by const reference. [passedByValue]
[protocols/jd2/FileSystemJobDistributor.cc:270]: (style) Variable 'outputter' is assigned a value that is never used. [unreadVariable]
[protocols/jd2/InnerJob.hh:106]: (performance) Function parameter 'output_name' should be passed by const reference. [passedByValue]
[protocols/jd2/JobDistributor.cc:625]: (style) The scope of the variable 'allow_job_update' can be reduced. [variableScope]
[protocols/jd2/JobDistributor.cc:636]: (style) Condition 'allow_job_update' is always true [knownConditionTrueFalse]
[protocols/jd2/Job.hh:173]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[protocols/jd2/mmtfJobOutputter.cc:91]: (style) Variable 'sfr' is assigned a value that is never used. [unreadVariable]
[protocols/jd2/MPIWorkPartitionJobDistributor.cc:65]: (performance) Variable 'npes_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/jd2/MPIWorkPartitionJobDistributor.cc:66]: (performance) Variable 'rank_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/jd2/ShuffleJobDistributor.cc:45]: (performance) Variable 'next_random_job_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/jd2/SilentFileJobOutputter.cc:364]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[protocols/jd2/SilentFileJobOutputter.cc:90]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[protocols/jd2/util.cc:370]: (style) Parameter 'opts' can be declared with const [constParameter]
[protocols/jd2/VectorPoseJobDistributor.cc:69]: (warning) Member variable 'VectorPoseJobDistributor::randomize_input_' is not initialized in the constructor. [uninitMemberVar]
[protocols/jd3/chunk_library/ChunkLibraryJobQueen.cc:1230]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[protocols/jd3/chunk_library_inputters/ChunkLibraryInputSource.cc:37]: (performance) Function parameter 'origin' should be passed by const reference. [passedByValue]
[protocols/jd3/full_model_inputters/FullModelInputSource.cc:37]: (performance) Function parameter 'origin' should be passed by const reference. [passedByValue]
[protocols/jd3/JobQueen.cc:33]: (performance) Variable 'job_tracker_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/jd3/pose_inputters/PoseInputSource.cc:37]: (performance) Function parameter 'origin' should be passed by const reference. [passedByValue]
[protocols/jd3/pose_outputters/DeNovoSilentFilePoseOutputter.hh:113]: (style) Unused private function: 'DeNovoSilentFilePoseOutputter::initialize_sf_options' [unusedPrivateFunction]
[protocols/jd3/pose_outputters/ScoreFileOutputter.cc:179]: (style) Parameter 'read_options' can be declared with const [constParameter]
[protocols/jobdist/Jobs.hh:104]: (performance) Function parameter 'str' should be passed by const reference. [passedByValue]
[protocols/jumping/JumpSample.cc:277]: (style) Variable 'f' can be declared with const [constVariable]
[protocols/jumping/JumpSample.cc:424]: (style) Parameter 'native_pose' can be declared with const [constParameter]
[protocols/jumping/JumpSample.cc:470] -> [protocols/jumping/JumpSample.cc:485]: (style) Local variable 'jump_nr' shadows outer variable [shadowVariable]
[protocols/jumping/JumpSetup.hh:316]: (performance) Function parameter 'ss' should be passed by const reference. [passedByValue]
[protocols/jumping/MembraneJump.cc:64]: (performance) Variable 'template_size_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/jumping/MembraneJump.cc:65]: (performance) Variable 'pairings_size_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/jumping/PairingLibrary.cc:608] -> [protocols/jumping/PairingLibrary.cc:623]: (style) Local variable 'jump_nr' shadows outer variable [shadowVariable]
[protocols/jumping/SameStrand.cc:84]: (performance) Variable 'total_residue_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/jumping/SameStrand.cc:85]: (performance) Variable 'secondary_structure_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/jumping/SameStrand.cc:86]: (performance) Variable 'same_strand_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/jumping/SameStrand.cc:87]: (performance) Variable 'strand_sum_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/kinematic_closure/BalancedKicMover.cc:59]: (performance) Variable 'perturbers_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/kinematic_closure/KicMover.cc:66]: (performance) Variable 'perturbers_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/kinematic_closure/perturbers/FragmentPerturber.cc:44]: (performance) Variable 'frag_libs_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/kinematic_closure/pivot_pickers/FixedPivots.cc:30]: (performance) Variable 'start_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/kinematic_closure/pivot_pickers/FixedPivots.cc:31]: (performance) Variable 'stop_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/kinematic_closure/pivot_pickers/FixedPivots.cc:32]: (performance) Variable 'cut_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/legacy_sewing/conformation/Assembly.cc:1256]: (performance) Function parameter 'object_name' should be passed by const reference. [passedByValue]
[protocols/legacy_sewing/conformation/Assembly.cc:367]: (style) Variable 'reference_is_nter' is assigned a value that is never used. [unreadVariable]
[protocols/legacy_sewing/conformation/Assembly.cc:760]: (style) Variable 'nat_ro_map' is assigned a value that is never used. [unreadVariable]
[protocols/legacy_sewing/conformation/AssemblyFactory.cc:31]: (performance) Function parameter 'assembly_name' should be passed by const reference. [passedByValue]
[protocols/legacy_sewing/conformation/ContinuousAssembly.cc:80] -> [protocols/legacy_sewing/conformation/ContinuousAssembly.cc:116]: (style) Local variable 'it' shadows outer variable [shadowVariable]
[protocols/legacy_sewing/conformation/ContinuousAssembly.cc:81] -> [protocols/legacy_sewing/conformation/ContinuousAssembly.cc:117]: (style) Local variable 'it_end' shadows outer variable [shadowVariable]
[protocols/legacy_sewing/conformation/Model.cc:381]: (error) Invalid iterator 'seg_it' used. [eraseDereference]
[protocols/legacy_sewing/hashing/Hasher.cc:603]: (style) Variable 'index' is assigned a value that is never used. [unreadVariable]
[protocols/legacy_sewing/hashing/Hasher.hh:129]: (performance) Variable 'resnum' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/legacy_sewing/sampling/LegacyLoophashAssemblyMover.cc:228]: (style) Variable 'reordered_assembly' is assigned a value that is never used. [unreadVariable]
[protocols/legacy_sewing/sampling/LegacyLoophashAssemblyMover.cc:232]: (style) Variable 'assembly_pose' is assigned a value that is never used. [unreadVariable]
[protocols/legacy_sewing/sampling/LegacyMonteCarloAssemblyMover.cc:101]: (style) Variable 'current_add_probability' is assigned a value that is never used. [unreadVariable]
[protocols/legacy_sewing/sampling/LegacyRehashAssemblyMover.cc:190]: (style) Variable 'reordered_assembly' is assigned a value that is never used. [unreadVariable]
[protocols/legacy_sewing/sampling/LegacyRehashAssemblyMover.cc:194]: (style) Variable 'assembly_pose' is assigned a value that is never used. [unreadVariable]
[protocols/legacy_sewing/sampling/LegacyRepeatAssemblyMover.cc:103]: (performance) Variable 'num_repeats_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/legacy_sewing/sampling/LegacyRepeatAssemblyMover.cc:159] -> [protocols/legacy_sewing/sampling/LegacyRepeatAssemblyMover.cc:178]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/legacy_sewing/sampling/requirements/LegacyRequirementSet.cc:192]: (style) The scope of the variable 'violates' can be reduced. [variableScope]
[protocols/legacy_sewing/sampling/requirements/LegacyRequirementSet.cc:192]: (style) Variable 'violates' is assigned a value that is never used. [unreadVariable]
[protocols/legacy_sewing/sampling/SewGraph.cc:605]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[protocols/legacy_sewing/sampling/SewGraph.cc:624] -> [protocols/legacy_sewing/sampling/SewGraph.cc:651]: (style) Local variable 'it' shadows outer variable [shadowVariable]
[protocols/legacy_sewing/sampling/SewGraph.cc:625] -> [protocols/legacy_sewing/sampling/SewGraph.cc:652]: (style) Local variable 'it_end' shadows outer variable [shadowVariable]
[protocols/legacy_sewing/sampling/SewGraph.cc:676]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[protocols/legacy_sewing/scoring/LegacyAssemblyScorer.hh:59] -> [protocols/legacy_sewing/scoring/LegacyAssemblyScorer.hh:89]: (style) Local variable 'score' shadows outer function [shadowFunction]
[protocols/ligand_docking/CompoundTranslate.cc:50]: (warning) Member variable 'CompoundTranslate::allow_overlap_' is not initialized in the constructor. [uninitMemberVar]
[protocols/ligand_docking/CompoundTranslate.cc:50]: (warning) Member variable 'CompoundTranslate::randomize_order_' is not initialized in the constructor. [uninitMemberVar]
[protocols/ligand_docking/GALigandDock/EntropyEstimator.cc:390]: (style) Variable 'pose_min' is assigned a value that is never used. [unreadVariable]
[protocols/ligand_docking/GALigandDock/EntropyEstimator.cc:422]: (style) Variable 'pose_min' is assigned a value that is never used. [unreadVariable]
[protocols/ligand_docking/GALigandDock/GALigandDock.cc:1147]: (style) Parameter 'gene' can be declared with const [constParameter]
[protocols/ligand_docking/GALigandDock/GALigandDock.cc:1372] -> [protocols/ligand_docking/GALigandDock/GALigandDock.cc:1401]: (style) Local variable 'nstruct_ref' shadows outer variable [shadowVariable]
[protocols/ligand_docking/GALigandDock/GALigandDock.cc:1662] -> [protocols/ligand_docking/GALigandDock/GALigandDock.cc:1672]: (style) Local variable 'tag_it' shadows outer variable [shadowVariable]
[protocols/ligand_docking/GALigandDock/GALigandDock.cc:367] -> [protocols/ligand_docking/GALigandDock/GALigandDock.cc:374]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/ligand_docking/GALigandDock/GALigandDock.cc:716]: (style) Variable 'lines' is assigned a value that is never used. [unreadVariable]
[protocols/ligand_docking/GALigandDock/GALigandDock.cc:735]: (performance) Function parameter 'ligand' should be passed by const reference. [passedByValue]
[protocols/ligand_docking/GALigandDock/GALigandDock.cc:93]: (performance) Variable 'scfxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/ligand_docking/GALigandDock/GALigandDock.hh:222]: (performance) Function parameter 'ligand_name' should be passed by const reference. [passedByValue]
[protocols/ligand_docking/GALigandDock/GALigandDock.hh:50]: (style) Parameter 'a' can be declared with const [constParameter]
[protocols/ligand_docking/GALigandDock/GALigandDock.hh:50]: (style) Parameter 'b' can be declared with const [constParameter]
[protocols/ligand_docking/GALigandDock/GALigandDock.hh:64]: (performance) Function parameter 'ligandname' should be passed by const reference. [passedByValue]
[protocols/ligand_docking/GALigandDock/GAOptimizer.cc:234]: (style) Variable 'move' is assigned a value that is never used. [unreadVariable]
[protocols/ligand_docking/GALigandDock/GAOptimizer.cc:249]: (style) Variable 'move' is assigned a value that is never used. [unreadVariable]
[protocols/ligand_docking/GALigandDock/GAOptimizer.cc:321]: (performance) Function parameter 'lig' should be passed by const reference. [passedByValue]
[protocols/ligand_docking/GALigandDock/GAOptimizer.hh:76]: (performance) Function parameter 'native' should be passed by const reference. [passedByValue]
[protocols/ligand_docking/GALigandDock/GridHash3D.hh:62]: (performance) Variable 'resolution_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/ligand_docking/GALigandDock/GridScorer.cc:1119]: (style) Variable 'sf1b' is assigned a value that is never used. [unreadVariable]
[protocols/ligand_docking/GALigandDock/GridScorer.cc:161]: (performance) Variable 'sfxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/ligand_docking/GALigandDock/GridScorer.cc:1641] -> [protocols/ligand_docking/GALigandDock/GridScorer.cc:1682]: (style) Local variable 'dpenalty' shadows outer variable [shadowVariable]
[protocols/ligand_docking/GALigandDock/GridScorer.cc:1756] -> [protocols/ligand_docking/GALigandDock/GridScorer.cc:1772]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/ligand_docking/GALigandDock/GridScorer.cc:1756] -> [protocols/ligand_docking/GALigandDock/GridScorer.cc:1812]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/ligand_docking/GALigandDock/GridScorer.cc:353]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[protocols/ligand_docking/GALigandDock/GridScorer.cc:362]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[protocols/ligand_docking/GALigandDock/GridScorer.cc:366]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[protocols/ligand_docking/GALigandDock/LigandAligner.cc:1026] -> [protocols/ligand_docking/GALigandDock/LigandAligner.cc:1046]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/ligand_docking/GALigandDock/LigandAligner.cc:1026] -> [protocols/ligand_docking/GALigandDock/LigandAligner.cc:1060]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/ligand_docking/GALigandDock/LigandAligner.cc:1026] -> [protocols/ligand_docking/GALigandDock/LigandAligner.cc:1104]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/ligand_docking/GALigandDock/LigandAligner.cc:1459]: (style) Variable 'cst_source' is assigned a value that is never used. [unreadVariable]
[protocols/ligand_docking/GALigandDock/LigandAligner.cc:605]: (style) The scope of the variable 'accepted_in_stage1' can be reduced. [variableScope]
[protocols/ligand_docking/GALigandDock/LigandAligner.cc:649] -> [protocols/ligand_docking/GALigandDock/LigandAligner.cc:726]: (style) Local variable 'nneigh_res' shadows outer variable [shadowVariable]
[protocols/ligand_docking/GALigandDock/LigandAligner.hh:168]: (warning) Member variable 'ConstraintInfo::is_ligand_' is not initialized in the constructor. [uninitMemberVar]
[protocols/ligand_docking/GALigandDock/LigandAligner.hh:59]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[protocols/ligand_docking/GALigandDock/LigandConformer.cc:45]: (warning) Member variable 'LigandConformer::ligandxyz_synced_' is not initialized in the constructor. [uninitMemberVar]
[protocols/ligand_docking/GALigandDock/LigandConformer.cc:731]: (style) Condition 'l1_is_master' is always true [knownConditionTrueFalse]
[protocols/ligand_docking/GALigandDock/LigandConformer.cc:732]: (style) Condition 'l1_is_master' is always true [knownConditionTrueFalse]
[protocols/ligand_docking/GALigandDock/LigandConformer.cc:736]: (style) Condition 'l1_is_master' is always true [knownConditionTrueFalse]
[protocols/ligand_docking/GALigandDock/LigandConformer.hh:201]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[protocols/ligand_docking/GALigandDock/LigandConformer.hh:219]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[protocols/ligand_docking/GALigandDock/RotamerData.cc:48]: (performance) Variable 'nrots_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/ligand_docking/GALigandDock/util.cc:40]: (performance) Function parameter 'atomname' should be passed by const reference. [passedByValue]
[protocols/ligand_docking/GALigandDock/util.cc:65]: (performance) Function parameter 'atomname' should be passed by const reference. [passedByValue]
[protocols/ligand_docking/GALigandDock/util.hh:28]: (performance) Function parameter 'atomname' should be passed by const reference. [passedByValue]
[protocols/ligand_docking/GALigandDock/util.hh:33]: (performance) Function parameter 'atomname' should be passed by const reference. [passedByValue]
[protocols/ligand_docking/HighResDocker.cc:363]: (style) Variable 'ligand_tethers' is assigned a value that is never used. [unreadVariable]
[protocols/ligand_docking/HighResEnsemble.cc:160] -> [protocols/ligand_docking/HighResEnsemble.cc:175]: (style) Local variable 'scorefxn_name' shadows outer variable [shadowVariable]
[protocols/ligand_docking/HighResEnsemble.cc:165] -> [protocols/ligand_docking/HighResEnsemble.cc:178]: (style) Local variable 'movemap_builder_name' shadows outer variable [shadowVariable]
[protocols/ligand_docking/HighResEnsemble.cc:273]: (style) Variable 'correlation_before' is assigned a value that is never used. [unreadVariable]
[protocols/ligand_docking/HighResEnsemble.cc:539]: (style) Variable 'tied_rank_avg' is assigned a value that is never used. [unreadVariable]
[protocols/ligand_docking/HighResEnsemble.cc:540]: (style) Variable 'tied_start' is assigned a value that is never used. [unreadVariable]
[protocols/ligand_docking/InterfaceScoreCalculator.cc:55]: (warning) Member variable 'InterfaceScoreCalculator::native_ensemble_best_' is not initialized in the constructor. [uninitMemberVar]
[protocols/ligand_docking/LigandDesign.cc:109]: (performance) Function parameter 'pose' should be passed by const reference. [passedByValue]
[protocols/ligand_docking/LigandDesign.cc:113]: (performance) Function parameter 'pose' should be passed by const reference. [passedByValue]
[protocols/ligand_docking/MinimizeBackbone.cc:181]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/ligand_docking/MinimizeBackbone.cc:251]: (style) Variable 'stop' is assigned a value that is never used. [unreadVariable]
[protocols/ligand_docking/MinimizeBackbone.cc:292]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/ligand_docking/MinimizeLigand.cc:43]: (warning) Member variable 'MinimizeLigand::chain_' is not initialized in the constructor. [uninitMemberVar]
[protocols/ligand_docking/ProtLigEnsemble.cc:156] -> [protocols/ligand_docking/ProtLigEnsemble.cc:165]: (style) Local variable 'scorefxn_name' shadows outer variable [shadowVariable]
[protocols/ligand_docking/ProtLigEnsemble.cc:245]: (style) Parameter 'line' can be declared with const [constParameter]
[protocols/ligand_docking/ProtLigEnsemble.cc:347]: (style) The scope of the variable 'mc_result' can be reduced. [variableScope]
[protocols/ligand_docking/ProtLigEnsemble.cc:658]: (style) Variable 'tied_rank_avg' is assigned a value that is never used. [unreadVariable]
[protocols/ligand_docking/ProtLigEnsemble.cc:659]: (style) Variable 'tied_start' is assigned a value that is never used. [unreadVariable]
[protocols/ligand_docking/rdf/RDFFunctionFactory.cc:140]: (performance) Function parameter 'tag_name' should be passed by const reference. [passedByValue]
[protocols/ligand_docking/rdf/StandardRDFFunctions.cc:209]: (warning) Member variable 'RDFChargeFunction::function_sign_' is not initialized in the constructor. [uninitMemberVar]
[protocols/ligand_docking/rdf/StandardRDFFunctions.cc:311]: (warning) Member variable 'RDFHbondFunction::function_sign_' is not initialized in the constructor. [uninitMemberVar]
[protocols/ligand_docking/rdf/StandardRDFFunctions.cc:421]: (warning) Member variable 'RDFBinaryHbondFunction::function_sign_' is not initialized in the constructor. [uninitMemberVar]
[protocols/ligand_docking/Rotate.cc:106] -> [protocols/ligand_docking/Rotate.cc:108]: (style) Local variable 'chain_ids' shadows outer variable [shadowVariable]
[protocols/ligand_docking/Rotate.cc:298]: (style) Variable 'mover' is assigned a value that is never used. [unreadVariable]
[protocols/ligand_docking/Rotate.cc:300]: (style) Variable 'mover' is assigned a value that is never used. [unreadVariable]
[protocols/ligand_docking/Rotate.cc:439] -> [protocols/ligand_docking/Rotate.cc:449]: (style) Local variable 'jump_id' shadows outer argument [shadowArgument]
[protocols/ligand_docking/Transform.cc:530]: (style) Parameter 'starting_residue' can be declared with const [constParameter]
[protocols/ligand_docking/Transform.cc:605]: (style) Parameter 'residue' can be declared with const [constParameter]
[protocols/ligand_docking/Transform.cc:637]: (style) Parameter 'residue' can be declared with const [constParameter]
[protocols/ligand_docking/TransformEnsemble.cc:553]: (style) Parameter 'current' can be declared with const [constParameter]
[protocols/ligand_docking/Translate.cc:104]: (performance) Function parameter 'translate_info' should be passed by const reference. [passedByValue]
[protocols/loop_build/LoopBuildMover.cc:141] -> [protocols/loop_build/LoopBuildMover.cc:192]: (style) Local variable 'final_score' shadows outer variable [shadowVariable]
[protocols/loop_build/LoopBuildMover.cc:63]: (performance) Function parameter 'loop_relax_mover' should be passed by const reference. [passedByValue]
[protocols/loop_build/LoopMover_SlidingWindow.cc:154]: (style) Variable 'fragset_small_' is assigned a value that is never used. [unreadVariable]
[protocols/loop_build/LoopMover_SlidingWindow.cc:155]: (style) Variable 'fragset_small_' is assigned a value that is never used. [unreadVariable]
[protocols/loop_grower/FragmentExtension.cc:1180]: (style) The scope of the variable 'is_cterm' can be reduced. [variableScope]
[protocols/loop_grower/FragmentExtension.cc:1180]: (style) Variable 'is_cterm' is assigned a value that is never used. [unreadVariable]
[protocols/loop_grower/FragmentExtension.cc:1181]: (style) The scope of the variable 'is_nterm' can be reduced. [variableScope]
[protocols/loop_grower/FragmentExtension.cc:1181]: (style) Variable 'is_nterm' is assigned a value that is never used. [unreadVariable]
[protocols/loop_grower/FragmentExtension.cc:181]: (warning) Member variable 'FragmentExtension::dumpfragments_' is not initialized in the constructor. [uninitMemberVar]
[protocols/loop_grower/FragmentExtension.cc:182]: (performance) Variable 'beamwidth_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/FragmentExtension.cc:183]: (performance) Variable 'fragtrials_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/FragmentExtension.cc:184]: (performance) Variable 'chainbreak_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/FragmentExtension.cc:185]: (performance) Variable 'continuous_weight_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/FragmentExtension.cc:186]: (performance) Variable 'rmscutoff_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/FragmentExtension.cc:187]: (performance) Variable 'fragcluster_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/FragmentExtension.cc:188]: (performance) Variable 'master_beam_cutoff_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/FragmentExtension.cc:189]: (performance) Variable 'sheetbonus_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/FragmentExtension.cc:190]: (performance) Variable 'sheet_tolerance_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/FragmentExtension.cc:191]: (performance) Variable 'sc_scale_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/FragmentExtension.cc:192]: (performance) Variable 'fa_bonus_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/FragmentExtension.cc:193]: (performance) Variable 'window_dens_weight_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/FragmentExtension.cc:195]: (performance) Variable 'rmswindow_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/FragmentExtension.cc:196]: (performance) Variable 'steps_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/FragmentExtension.cc:197]: (performance) Variable 'parallelcount_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/FragmentExtension.cc:198]: (performance) Variable 'montecarlorounds_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/FragmentExtension.cc:199]: (performance) Variable 'sheetcriteria_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/FragmentExtension.cc:200]: (performance) Variable 'beamscorecutoff_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/FragmentExtension.cc:202]: (performance) Variable 'fragmelt_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/FragmentExtension.cc:203]: (performance) Variable 'minmelt_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/FragmentExtension.cc:204]: (performance) Variable 'pack_min_cycles_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/FragmentExtension.cc:206]: (performance) Variable 'maxloopsize_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/FragmentExtension.cc:207]: (performance) Variable 'sf_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/FragmentExtension.cc:365]: (style) The scope of the variable 'start_fasta' can be reduced. [variableScope]
[protocols/loop_grower/FragmentExtension.cc:365]: (style) The scope of the variable 'stop_fasta' can be reduced. [variableScope]
[protocols/loop_grower/FragmentExtension.cc:367] -> [protocols/loop_grower/FragmentExtension.cc:523]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/loop_grower/FragmentExtension.cc:515]: (style) Variable 'restore_sc' is assigned a value that is never used. [unreadVariable]
[protocols/loop_grower/FragmentExtension.cc:521]: (style) Variable 'bestpose' is assigned a value that is never used. [unreadVariable]
[protocols/loop_grower/FragmentExtension.cc:530]: (style) Variable 'bestpose' is assigned a value that is never used. [unreadVariable]
[protocols/loop_grower/FragmentExtension.cc:990] -> [protocols/loop_grower/FragmentExtension.cc:991]: (warning) Identical inner 'if' condition is always true. [identicalInnerCondition]
[protocols/loop_grower/FragmentExtension.hh:123]: (warning) Member variable 'LoopComparator::assign_incomplete_' is not initialized in the constructor. [uninitMemberVar]
[protocols/loop_grower/FragmentExtension.hh:123]: (warning) Member variable 'LoopComparator::read_from_file_' is not initialized in the constructor. [uninitMemberVar]
[protocols/loop_grower/LoopGrower.cc:1109] -> [protocols/loop_grower/LoopGrower.cc:1112]: (style) Local variable 'residue_dens' shadows outer variable [shadowVariable]
[protocols/loop_grower/LoopGrower.cc:1562]: (style) Variable 'newcalphas' is assigned a value that is never used. [unreadVariable]
[protocols/loop_grower/LoopGrower.cc:1725]: (style) Variable 'worst_cluster_score' is assigned a value that is never used. [unreadVariable]
[protocols/loop_grower/LoopGrower.cc:224] -> [protocols/loop_grower/LoopGrower.cc:232]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/loop_grower/LoopGrower.cc:2414] -> [protocols/loop_grower/LoopGrower.cc:2441]: (style) Local variable 'nativerankrms' shadows outer variable [shadowVariable]
[protocols/loop_grower/LoopGrower.cc:246] -> [protocols/loop_grower/LoopGrower.cc:254]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/loop_grower/LoopGrower.cc:2745] -> [protocols/loop_grower/LoopGrower.cc:2747]: (warning) Opposite inner 'if' condition leads to a dead code block. [oppositeInnerCondition]
[protocols/loop_grower/LoopGrower.cc:278] -> [protocols/loop_grower/LoopGrower.cc:285]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/loop_grower/LoopGrower.cc:2941] -> [protocols/loop_grower/LoopGrower.cc:2942]: (style) Redundant initialization for 'lps'. The initialized value is overwritten before it is read. [redundantInitialization]
[protocols/loop_grower/LoopGrower.cc:468] -> [protocols/loop_grower/LoopGrower.cc:598]: (style) Local variable 'lps' shadows outer variable [shadowVariable]
[protocols/loop_grower/LoopGrower.cc:468] -> [protocols/loop_grower/LoopGrower.cc:847]: (style) Local variable 'lps' shadows outer variable [shadowVariable]
[protocols/loop_grower/LoopGrower.cc:535] -> [protocols/loop_grower/LoopGrower.cc:535]: (style) The statement 'if (insert_lower_melt!=0) insert_lower_melt=0' is logically equivalent to 'insert_lower_melt=0'. [duplicateConditionalAssign]
[protocols/loop_grower/LoopGrower.cc:541] -> [protocols/loop_grower/LoopGrower.cc:541]: (style) The statement 'if (insert_upper_melt!=0) insert_upper_melt=0' is logically equivalent to 'insert_upper_melt=0'. [duplicateConditionalAssign]
[protocols/loop_grower/LoopGrower.cc:820]: (style) Variable 'restore_sc' is assigned a value that is never used. [unreadVariable]
[protocols/loop_grower/LoopGrower.cc:884] -> [protocols/loop_grower/LoopGrower.cc:889]: (style) Local variable 'residue_dens' shadows outer variable [shadowVariable]
[protocols/loop_grower/LoopGrower.cc:884] -> [protocols/loop_grower/LoopGrower.cc:898]: (style) Local variable 'residue_dens' shadows outer variable [shadowVariable]
[protocols/loop_grower/LoopGrower.hh:100]: (performance) Variable 'residues_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/LoopGrower.hh:101]: (performance) Variable 'rotation_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/LoopGrower.hh:102]: (performance) Variable 'translation_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/LoopGrower.hh:103]: (performance) Variable 'jumpid_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/LoopGrower.hh:104]: (performance) Variable 'baseres_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/LoopGrower.hh:216]: (performance) Function parameter 'id' should be passed by const reference. [passedByValue]
[protocols/loop_grower/LoopGrower.hh:278]: (performance) Variable 'master_beam_width_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/LoopGrower.hh:278]: (performance) Variable 'maxelts_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/LoopGrower.hh:278]: (performance) Variable 'rmscutoff_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/LoopGrower.hh:279]: (performance) Variable 'master_beam_cutoff_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/LoopGrower.hh:438]: (performance) Variable 'pack_min_cycles_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/LoopGrower.hh:439]: (performance) Variable 'fafilter_pmcycles_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/LoopGrower.hh:440]: (performance) Variable 'rmscutoff_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/LoopGrower.hh:442]: (performance) Variable 'sf_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/LoopGrower.hh:550]: (performance) Function parameter 'storedbeams' should be passed by const reference. [passedByValue]
[protocols/loop_grower/LoopGrower.hh:551]: (performance) Function parameter 'filterbeams' should be passed by const reference. [passedByValue]
[protocols/loop_grower/LoopGrower.hh:552]: (performance) Function parameter 'coordfile' should be passed by const reference. [passedByValue]
[protocols/loop_grower/LoopGrower.hh:553]: (performance) Function parameter 'skeletonfile' should be passed by const reference. [passedByValue]
[protocols/loop_grower/LoopGrower.hh:75]: (performance) Variable 'phi_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/LoopGrower.hh:76]: (performance) Variable 'psi_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/LoopGrower.hh:77]: (performance) Variable 'omega_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/LoopGrower.hh:78]: (performance) Variable 'nchi_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/LoopGrower.hh:79]: (performance) Variable 'chi1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/LoopGrower.hh:79]: (performance) Variable 'chi2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/LoopGrower.hh:79]: (performance) Variable 'chi3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/LoopGrower.hh:79]: (performance) Variable 'chi4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/LoopGrower.hh:83]: (performance) Variable 'phi_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_grower/SheetSampler.cc:117]: (style) Variable 'bestpose' is assigned a value that is never used. [unreadVariable]
[protocols/loop_grower/SheetSampler.hh:66]: (performance) Variable 'instance_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loophash/BackboneDB.hh:147]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[protocols/loophash/BackboneDB.hh:73]: (performance) Variable 'phi_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loophash/BackboneDB.hh:74]: (performance) Variable 'psi_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loophash/BackboneDB.hh:75]: (performance) Variable 'omega_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loophash/Exceptions.hh:35]: (performance) Function parameter 'action' should be passed by const reference. [passedByValue]
[protocols/loophash/Exceptions.hh:35]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[protocols/loophash/Exceptions.hh:64]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[protocols/loophash/Exceptions.hh:74]: (performance) Function parameter 'reason' should be passed by const reference. [passedByValue]
[protocols/loophash/LoopHashLibrary.cc:1038] -> [protocols/loophash/LoopHashLibrary.cc:1096]: (style) Local variable 'it' shadows outer variable [shadowVariable]
[protocols/loophash/LoopHashLibrary.cc:1047] -> [protocols/loophash/LoopHashLibrary.cc:1127]: (style) Local variable 't' shadows outer variable [shadowVariable]
[protocols/loophash/LoopHashLibrary.cc:184] -> [protocols/loophash/LoopHashLibrary.cc:188]: (style) Local variable 'dbstring' shadows outer variable [shadowVariable]
[protocols/loophash/LoopHashLibrary.hh:142]: (performance) Function parameter 'setting' should be passed by const reference. [passedByValue]
[protocols/loophash/LoopHashMap.cc:452]: (style) Parameter 'transform' can be declared with const [constParameter]
[protocols/loophash/LoopHashMap.hh:170]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[protocols/loophash/LoopHashMoverWrapper.cc:81]: (warning) Member variable 'LoopHashMoverWrapper::filter_by_phipsi_' is not initialized in the constructor. [uninitMemberVar]
[protocols/loophash/LoopHashRelaxProtocol.cc:148]: (style) Variable 'opose' is assigned a value that is never used. [unreadVariable]
[protocols/loophash/LoopHashSampler.cc:150] -> [protocols/loophash/LoopHashSampler.cc:153]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/loophash/LoopHashSampler.cc:190] -> [protocols/loophash/LoopHashSampler.cc:326]: (style) Local variable 'starttime' shadows outer variable [shadowVariable]
[protocols/loophash/MPI_LoopHashRefine.cc:208]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[protocols/loophash/MPI_LoopHashRefine.cc:228]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[protocols/loophash/MPI_LoopHashRefine.cc:277]: (style) Parameter 'pss' can be declared with const [constParameter]
[protocols/loophash/MPI_LoopHashRefine_Emperor.cc:160]: (performance) Function parameter 'add_algorithm' should be passed by const reference. [passedByValue]
[protocols/loophash/MPI_LoopHashRefine.hh:77]: (performance) Function parameter 'new_ident' should be passed by const reference. [passedByValue]
[protocols/loophash/MPI_LoopHashRefine_Master.cc:288]: (style) Variable 'end_ir' is assigned a value that is never used. [unreadVariable]
[protocols/loophash/MPI_LoopHashRefine_Master.cc:368]: (style) Variable 'jt_last' is assigned a value that is never used. [unreadVariable]
[protocols/loop_modeler/perturbers/LoopHashPerturber.cc:38]: (performance) Variable 'lh_library_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_modeler/perturbers/LoopHashPerturber.hh:86]: (performance) Function parameter 'value' should be passed by const reference. [passedByValue]
[protocols/loop_modeling/LoopBuilder.cc:83]: (performance) Variable 'max_attempts_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_modeling/samplers/LegacyKicSampler.cc:44]: (performance) Variable 'mover_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loop_modeling/utilities/rosetta_scripts.cc:103]: (style) Parameter 'attributes' can be declared with const [constParameter]
[protocols/loops/Exceptions.hh:29]: (performance) Function parameter 'msg' should be passed by const reference. [passedByValue]
[protocols/loops/FoldTreeFromLoopsWrapper.cc:44]: (performance) Variable 'loops_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/loops/loop_closure/ccd/SlidingWindowLoopClosure.cc:573] -> [protocols/loops/loop_closure/ccd/SlidingWindowLoopClosure.cc:588]: (warning) Opposite inner 'if' condition leads to a dead code block. [oppositeInnerCondition]
[protocols/loops/loop_closure/kinematic_closure/KinematicWrapper.cc:117]: (style) Condition 'counter>limit_' is always true [knownConditionTrueFalse]
[protocols/loops/loop_mover/IndependentLoopMover.cc:65]: (warning) Member variable 'IndependentLoopMover::all_loops_closed_' is not initialized in the constructor. [uninitMemberVar]
[protocols/loops/loop_mover/IndependentLoopMover.cc:72]: (warning) Member variable 'IndependentLoopMover::all_loops_closed_' is not initialized in the constructor. [uninitMemberVar]
[protocols/loops/loop_mover/IndependentLoopMover.cc:80]: (warning) Member variable 'IndependentLoopMover::all_loops_closed_' is not initialized in the constructor. [uninitMemberVar]
[protocols/loops/loop_mover/IndependentLoopMover.cc:96]: (warning) Member variable 'IndependentLoopMover::all_loops_closed_' is not initialized in the constructor. [uninitMemberVar]
[protocols/loops/loop_mover/perturb/LoopMover_CCD.cc:235]: (style) Variable 'start_pose' is assigned a value that is never used. [unreadVariable]
[protocols/loops/loop_mover/perturb/LoopMover_KIC.cc:175]: (style) The scope of the variable 'cur_struct' can be reduced. [variableScope]
[protocols/loops/loop_mover/perturb/LoopMover_KIC.cc:395]: (style) Variable 'torsion_features' is assigned a value that is never used. [unreadVariable]
[protocols/loops/loop_mover/perturb/LoopMover_QuickCCD.cc:210]: (style) Variable 'start_pose' is assigned a value that is never used. [unreadVariable]
[protocols/loops/loop_mover/refine/LoopMover_KIC.cc:173]: (style) The scope of the variable 'cur_struct' can be reduced. [variableScope]
[protocols/loops/loop_mover/refine/LoopMover_KIC.cc:886]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/loops/looprelax_protocols.cc:1041]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/loops/looprelax_protocols.cc:1137]: (style) The scope of the variable 'n_small_chain_break_fail' can be reduced. [variableScope]
[protocols/loops/looprelax_protocols.cc:1138]: (style) The scope of the variable 'barcst_flip_flop' can be reduced. [variableScope]
[protocols/loops/looprelax_protocols.cc:1139]: (style) The scope of the variable 'barcst_small_flip_flop' can be reduced. [variableScope]
[protocols/loops/looprelax_protocols.cc:1199]: (style) Parameter 'pose1' can be declared with const [constParameter]
[protocols/loops/looprelax_protocols.cc:1200]: (style) Parameter 'pose2' can be declared with const [constParameter]
[protocols/loops/looprelax_protocols.hh:251]: (performance) Function parameter 'Loops_in' should be passed by const reference. [passedByValue]
[protocols/loops/Loops.cc:223]: (performance) Function parameter 'token' should be passed by const reference. [passedByValue]
[protocols/loops/Loops.cc:242]: (performance) Function parameter 'token' should be passed by const reference. [passedByValue]
[protocols/loops/loops_definers/util.cc:93]: (style) Parameter 'attributes' can be declared with const [constParameter]
[protocols/loops/loops_main.cc:945]: (performance) Inefficient usage of string::find() in condition; string::starts_with() could be faster. [stlIfStrFind]
[protocols/loops/loops_main.hh:275] -> [protocols/loops/loop_closure/ccd/SlidingWindowLoopClosure.cc:567]: (style) Local variable 'loop_rmsd' shadows outer function [shadowFunction]
[protocols/loops/util.cc:142]: (style) Parameter 'source' can be declared with const [constParameter]
[protocols/loops/util.cc:222]: (style) Parameter 'native_pose' can be declared with const [constParameter]
[protocols/loops/util.cc:338]: (style) Parameter 'exclude_regions' can be declared with const [constParameter]
[protocols/magnesium/MgMonteCarlo.cc:175]: (style) Variable 'mg_res' is assigned a value that is never used. [unreadVariable]
[protocols/magnesium/MgMonteCarlo.cc:81] -> [protocols/magnesium/MgMonteCarlo.cc:130]: (style) Local variable 'n' shadows outer variable [shadowVariable]
[protocols/magnesium/MgScanner.cc:114] -> [protocols/magnesium/MgScanner.cc:136]: (style) Local variable 'pose_save' shadows outer variable [shadowVariable]
[protocols/magnesium/MgScanner.cc:54]: (warning) Member variable 'MgScanner::hydrate_' is not initialized in the constructor. [uninitMemberVar]
[protocols/magnesium/MgScanner.cc:54]: (warning) Member variable 'MgScanner::integration_test_' is not initialized in the constructor. [uninitMemberVar]
[protocols/magnesium/MgScanner.cc:54]: (warning) Member variable 'MgScanner::minimize_during_scoring_' is not initialized in the constructor. [uninitMemberVar]
[protocols/magnesium/MgScanner.cc:54]: (warning) Member variable 'MgScanner::minimize_' is not initialized in the constructor. [uninitMemberVar]
[protocols/magnesium/MgScanner.cc:54]: (warning) Member variable 'MgScanner::tether_to_closest_res_' is not initialized in the constructor. [uninitMemberVar]
[protocols/magnesium/SampleGrid.cc:41]: (warning) Member variable 'SampleGrid::tether_to_closest_res_' is not initialized in the constructor. [uninitMemberVar]
[protocols/magnesium/util.cc:288]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[protocols/make_rot_lib/MakeRotLibMover.cc:1270] -> [protocols/make_rot_lib/MakeRotLibMover.cc:1271]: (warning) Identical inner 'if' condition is always true. [identicalInnerCondition]
[protocols/make_rot_lib/MakeRotLibMover.cc:1278] -> [protocols/make_rot_lib/MakeRotLibMover.cc:1279]: (warning) Identical inner 'if' condition is always true. [identicalInnerCondition]
[protocols/make_rot_lib/MakeRotLibMover.cc:307]: (style) Variable 'num_rotameric_chi' is assigned a value that is never used. [unreadVariable]
[protocols/make_rot_lib/MakeRotLibMover.cc:522] -> [protocols/make_rot_lib/MakeRotLibMover.cc:542]: (style) Local variable 'min_ener' shadows outer variable [shadowVariable]
[protocols/make_rot_lib/MakeRotLibMover.cc:549] -> [protocols/make_rot_lib/MakeRotLibMover.cc:567]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/make_rot_lib/MakeRotLibMover.cc:549] -> [protocols/make_rot_lib/MakeRotLibMover.cc:572]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/make_rot_lib/MakeRotLibMover.cc:72]: (performance) Variable 'scrfxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/make_rot_lib/MakeRotLibOptionsData.cc:109] -> [protocols/make_rot_lib/MakeRotLibOptionsData.cc:146]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/make_rot_lib/MakeRotLibOptionsData.cc:109] -> [protocols/make_rot_lib/MakeRotLibOptionsData.cc:149]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/make_rot_lib/MakeRotLibOptionsData.cc:46] -> [protocols/make_rot_lib/MakeRotLibOptionsData.cc:110]: (style) Local variable 'line' shadows outer variable [shadowVariable]
[protocols/make_rot_lib/MakeRotLibOptionsData.cc:46] -> [protocols/make_rot_lib/MakeRotLibOptionsData.cc:68]: (style) Local variable 'line' shadows outer variable [shadowVariable]
[protocols/match/downstream/DownstreamAlgorithm.hh:60]: (style) 'DownstreamAlgorithm::operator=' should return 'DownstreamAlgorithm &'. [operatorEq]
[protocols/match/downstream/ScoringSecMatchRPE.cc:85]: (performance) Variable 'cd_2b_pose_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/match/downstream/SecondaryMatcherToUpstreamResidue.hh:302]: (error) Reference to temporary returned. [returnTempReference]
[protocols/match/Hit.hh:148]: (performance) Variable 'downstream_conf_id_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/match/Matcher.cc:2249] -> [protocols/match/Matcher.cc:2256]: (style) Local variable 'n_combos' shadows outer variable [shadowVariable]
[protocols/match/Matcher.cc:2799] -> [protocols/match/Matcher.cc:2852]: (style) Local variable 'kk' shadows outer variable [shadowVariable]
[protocols/match/MatcherMover.cc:279] -> [protocols/match/MatcherMover.cc:281]: (style) Local variable 'selector_str' shadows outer variable [shadowVariable]
[protocols/match/MatcherTask.cc:1197]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[protocols/match/MatcherTask.cc:1209]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[protocols/match/output/MatchFilter.cc:35]: (performance) Function parameter 'filter_name' should be passed by const reference. [passedByValue]
[protocols/match/output/MatchScoreWriter.cc:156]: (style) Variable 'object_to_copy_to.score_output_filename_' is assigned a value that is never used. [unreadVariable]
[protocols/match/output/MatchScoreWriter.cc:157]: (style) Variable 'object_to_copy_to.output_header_' is assigned a value that is never used. [unreadVariable]
[protocols/match/output/MatchScoreWriter.cc:158]: (style) Variable 'object_to_copy_to.write_file_' is assigned a value that is never used. [unreadVariable]
[protocols/match/output/MatchScoreWriter.cc:159]: (style) Variable 'object_to_copy_to.generic_output_number_' is assigned a value that is never used. [unreadVariable]
[protocols/match/output/UpstreamCollisionFilter.cc:147]: (performance) Function parameter 'filter_name' should be passed by const reference. [passedByValue]
[protocols/match/output/UpstreamCollisionFilter.cc:47]: (performance) Function parameter 'filter_name' should be passed by const reference. [passedByValue]
[protocols/match/output/UpstreamDownstreamCollisionFilter.cc:45]: (performance) Function parameter 'filter_name' should be passed by const reference. [passedByValue]
[protocols/matdes/InterfacePackingFilter.cc:107]: (performance) Function parameter 's' should be passed by const reference. [passedByValue]
[protocols/matdes/InterfacePackingFilter.cc:140] -> [protocols/matdes/InterfacePackingFilter.cc:239]: (style) Local variable 'ir' shadows outer variable [shadowVariable]
[protocols/matdes/InterfacePackingFilter.cc:140] -> [protocols/matdes/InterfacePackingFilter.cc:243]: (style) Local variable 'jr' shadows outer variable [shadowVariable]
[protocols/matdes/InterfacePackingFilter.cc:169] -> [protocols/matdes/InterfacePackingFilter.cc:233]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/matdes/InterfacePackingFilter.cc:48]: (warning) Member variable 'InterfacePackingFilter::multicomp_' is not initialized in the constructor. [uninitMemberVar]
[protocols/matdes/MatDesGreedyOptMutationMover.hh:79]: (performance) Function parameter 'sample_type' should be passed by const reference. [passedByValue]
[protocols/matdes/MatDesPointMutationCalculator.cc:551]: (style) Redundant condition: !always_eval. 'always_eval || (!always_eval && filter_pass)' is equivalent to 'always_eval || filter_pass' [redundantCondition]
[protocols/matdes/OligomericAverageDegreeFilter.cc:62]: (warning) Member variable 'OligomericAverageDegreeFilter::verbose_' is not initialized in the constructor. [uninitMemberVar]
[protocols/matdes/OligomericAverageDegreeFilter.cc:62]: (warning) Member variable 'OligomericAverageDegreeFilter::write2pdb_' is not initialized in the constructor. [uninitMemberVar]
[protocols/matdes/SymUnsatHbondFilter.cc:127]: (performance) Function parameter 'sym_dofs' should be passed by const reference. [passedByValue]
[protocols/matdes/SymUnsatHbondFilter.cc:130]: (performance) Function parameter 'mode' should be passed by const reference. [passedByValue]
[protocols/matdes/SymUnsatHbondFilter.cc:164]: (style) Variable 'sym_aware_jump_id' is assigned a value that is never used. [unreadVariable]
[protocols/matdes/SymUnsatHbondFilter.cc:335]: (performance) Function parameter 'pymol_selection' should be passed by const reference. [passedByValue]
[protocols/matdes/SymUnsatHbondFilter.hh:105]: (performance) Function parameter 'atom_name' should be passed by const reference. [passedByValue]
[protocols/matdes/SymUnsatHbondFilter.hh:105]: (performance) Function parameter 'mode' should be passed by const reference. [passedByValue]
[protocols/matdes/SymUnsatHbondFilter.hh:105]: (performance) Function parameter 'residue_name' should be passed by const reference. [passedByValue]
[protocols/matdes/SymUnsatHbondFilter.hh:48]: (performance) Function parameter 'mode' should be passed by const reference. [passedByValue]
[protocols/matdes/SymUnsatHbondFilter.hh:48]: (performance) Function parameter 'sym_dofs' should be passed by const reference. [passedByValue]
[protocols/md/CartesianMD.cc:103]: (warning) Member variable 'CartesianMD::native_given_' is not initialized in the constructor. [uninitMemberVar]
[protocols/md/MDBase.cc:165]: (performance) Function parameter 'schfile' should be passed by const reference. [passedByValue]
[protocols/md/MDBase.cc:51]: (warning) Member variable 'MDBase::report_as_silent_' is not initialized in the constructor. [uninitMemberVar]
[protocols/md/MDBase.cc:51]: (warning) Member variable 'MDBase::report_scorecomp_' is not initialized in the constructor. [uninitMemberVar]
[protocols/md/MDBase.cc:51]: (warning) Member variable 'MDBase::scheduled_' is not initialized in the constructor. [uninitMemberVar]
[protocols/md/MDBase.cc:51]: (warning) Member variable 'MDBase::store_trj_' is not initialized in the constructor. [uninitMemberVar]
[protocols/md/MDBase.cc:51]: (warning) Member variable 'MDBase::trj_score_only_' is not initialized in the constructor. [uninitMemberVar]
[protocols/md/MDBase.cc:51]: (warning) Member variable 'MDBase::write_dynamic_rsr_' is not initialized in the constructor. [uninitMemberVar]
[protocols/md/MDBase.hh:148]: (performance) Function parameter 'setting' should be passed by const reference. [passedByValue]
[protocols/md/MDBase.hh:149]: (performance) Function parameter 'setting' should be passed by const reference. [passedByValue]
[protocols/md/MDBase.hh:156]: (performance) Function parameter 'setting' should be passed by const reference. [passedByValue]
[protocols/md/MDBase.hh:180]: (performance) Function parameter 'setting' should be passed by const reference. [passedByValue]
[protocols/md/MDBase.hh:185]: (performance) Function parameter 'setting' should be passed by const reference. [passedByValue]
[protocols/md/MDBase.hh:197]: (performance) Function parameter 'schfile' should be passed by const reference. [passedByValue]
[protocols/md/MDBase.hh:202]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[protocols/md/Rattle.hh:194]: (style) Parameter 'xyz' can be declared with const [constParameter]
[protocols/md/thermostat.hh:32]: (performance) Variable 'temp0_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/md/thermostat.hh:33]: (performance) Variable 'tau_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/md/thermostat.hh:34]: (performance) Variable 'nstep_per_update_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/md/thermostat.hh:35]: (performance) Variable 'ndof_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/md/thermostat.hh:39]: (performance) Variable 'temp0_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/md/thermostat.hh:40]: (performance) Variable 'tau_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/md/thermostat.hh:41]: (performance) Variable 'nstep_per_update_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/md/thermostat.hh:42]: (performance) Variable 'ndof_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/membrane/AddMembraneMover.cc:458]: (performance) Function parameter 'spanfile' should be passed by const reference. [passedByValue]
[protocols/membrane/AddMembraneMover.cc:894]: (style) Parameter 'attributes' can be declared with const [constParameter]
[protocols/membrane/benchmark/MakeCanonicalHelix.cc:115]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/membrane_benchmark/MembraneEnergyLandscapeSampler.cc:195] -> [protocols/membrane_benchmark/MembraneEnergyLandscapeSampler.cc:222]: (style) Local variable 'rotation_delta' shadows outer variable [shadowVariable]
[protocols/membrane_benchmark/MembraneEnergyLandscapeSampler.cc:91]: (performance) Function parameter 'sfxn_weights' should be passed by const reference. [passedByValue]
[protocols/membrane_benchmark/MembraneEnergyLandscapeSampler.cc:92]: (performance) Function parameter 'rotation_type' should be passed by const reference. [passedByValue]
[protocols/membrane_benchmark/PeptideOrientationMover.cc:86]: (performance) Function parameter 'sfxn_weights' should be passed by const reference. [passedByValue]
[protocols/membrane_benchmark/PeptideOrientationMover.cc:87]: (performance) Function parameter 'rotation_type' should be passed by const reference. [passedByValue]
[protocols/membrane/benchmark/SampleTiltAngles.cc:76]: (performance) Variable 'ref_sfxn1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/membrane/MPQuickRelaxMover.cc:94]: (performance) Function parameter 'nmoves' should be passed by const reference. [passedByValue]
[protocols/membrane/OptimizeProteinEmbeddingMover.cc:104]: (style) Variable 'st' is assigned a value that is never used. [unreadVariable]
[protocols/membrane/scoring/FaWaterToBilayerEnergy.cc:108]: (performance) Inefficient usage of string::find() in condition; string::starts_with() could be faster. [stlIfStrFind]
[protocols/membrane/scoring/FaWaterToBilayerEnergy.cc:285]: (performance) Function parameter 'atype_name' should be passed by const reference. [passedByValue]
[protocols/membrane/symmetry/SymmetricAddMembraneMover.cc:118]: (performance) Function parameter 'spanfile' should be passed by const reference. [passedByValue]
[protocols/membrane/symmetry/util.cc:51]: (style) Parameter 'topology' can be declared with const [constParameter]
[protocols/membrane/TiltMover.cc:109]: (warning) Member variable 'TiltMover::angle_' is not assigned a value in 'TiltMover::operator='. [operatorEqVarError]
[protocols/membrane/TranslationRotationMover.cc:418]: (style) Variable 'up_stub' is assigned a value that is never used. [unreadVariable]
[protocols/membrane/util.hh:149] -> [protocols/membrane/MPLipidAccessibility.cc:515]: (style) Local variable 'com' shadows outer function [shadowFunction]
[protocols/membrane/util.hh:149] -> [protocols/membrane/util.cc:1408]: (style) Local variable 'com' shadows outer function [shadowFunction]
[protocols/membrane/util.hh:149] -> [protocols/membrane/util.cc:1442]: (style) Local variable 'com' shadows outer function [shadowFunction]
[protocols/membrane/util.hh:149] -> [protocols/membrane/util.cc:1514]: (style) Local variable 'com' shadows outer function [shadowFunction]
[protocols/membrane/util.hh:149] -> [protocols/membrane/util.cc:1531]: (style) Local variable 'com' shadows outer function [shadowFunction]
[protocols/membrane/util.hh:149] -> [protocols/membrane/util.cc:1601]: (style) Local variable 'com' shadows outer function [shadowFunction]
[protocols/metal_interface/ZincHeterodimerMover.cc:97]: (warning) Assert statement calls a function which may have desired side effects: 'conformation'. [assertWithSideEffect]
[protocols/metal_interface/ZincHeterodimerMover.cc:98]: (warning) Assert statement calls a function which may have desired side effects: 'conformation'. [assertWithSideEffect]
[protocols/minimization_packing/BoltzmannRotamerMover.cc:241]: (style) Variable 'aa_count' is assigned a value that is never used. [unreadVariable]
[protocols/minimization_packing/BoltzmannRotamerMover.cc:244]: (style) Variable 'aa_count' is assigned a value that is never used. [unreadVariable]
[protocols/minimization_packing/GreenPacker.cc:772]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/minimization_packing/MinMover.cc:112]: (performance) Variable 'min_options_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/minimization_packing/MinMover.cc:125]: (performance) Variable 'min_options_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/minimization_packing/MinPackMover.cc:122]: (performance) Variable 'scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/minimization_packing/PackRotamersMover.cc:150]: (performance) Variable 'scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/minimization_packing/PackRotamersMover.cc:429]: (style) Parameter 'opts' can be declared with const [constParameter]
[protocols/minimization_packing/RepackSidechainsMover.cc:91]: (performance) Variable 'scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/minimization_packing/RotamerizeMover.cc:89]: (performance) Variable 'task_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/minimization_packing/RotamerTrialsMover.cc:60]: (warning) Member variable 'RotamerTrialsMover::show_packer_task_' is not initialized in the constructor. [uninitMemberVar]
[protocols/minimization_packing/SetReturningPackRotamersMover.cc:138]: (performance) Function parameter 'filename_prefix' should be passed by const reference. [passedByValue]
[protocols/monte_carlo/GenericMonteCarloMover.cc:1143]: (performance) Function parameter 's' should be passed by const reference. [passedByValue]
[protocols/monte_carlo/GenericMonteCarloMover.cc:1153]: (performance) Function parameter 's' should be passed by const reference. [passedByValue]
[protocols/monte_carlo/GenericMonteCarloMover.cc:579] -> [protocols/monte_carlo/GenericMonteCarloMover.cc:584]: (style) Condition '!reject_filter' is always true [knownConditionTrueFalse]
[protocols/monte_carlo/MonteCarloInterface.cc:38]: (performance) Function parameter 'interface' should be passed by const reference. [passedByValue]
[protocols/monte_carlo/MonteCarloInterface.cc:53]: (performance) Function parameter 'interface' should be passed by const reference. [passedByValue]
[protocols/motif_grafting/movers/MotifGraftMover.cc:1402]: (style) Variable 'tmpDistSqr' is assigned a value that is never used. [unreadVariable]
[protocols/motif_grafting/movers/MotifGraftMover.cc:902] -> [protocols/motif_grafting/movers/MotifGraftMover.cc:1010]: (style) Local variable 'tmpResi' shadows outer variable [shadowVariable]
[protocols/motif_grafting/movers/MotifGraftMover.cc:902] -> [protocols/motif_grafting/movers/MotifGraftMover.cc:919]: (style) Local variable 'tmpResi' shadows outer variable [shadowVariable]
[protocols/motif_grafting/movers/MotifGraftMover.cc:902] -> [protocols/motif_grafting/movers/MotifGraftMover.cc:977]: (style) Local variable 'tmpResi' shadows outer variable [shadowVariable]
[protocols/motif_grafting/movers/MotifGraftMover.cc:902] -> [protocols/motif_grafting/movers/MotifGraftMover.cc:995]: (style) Local variable 'tmpResi' shadows outer variable [shadowVariable]
[protocols/motif_grafting/movers/MotifGraftMover.cc:931] -> [protocols/motif_grafting/movers/MotifGraftMover.cc:984]: (style) Expression is always true because 'else if' condition is opposite to previous condition at line 931. [multiCondition]
[protocols/motif_grafting/movers/MotifGraftMover.cc:96]: (warning) Member variable 'MotifGraftMover::gp_b_allow_independent_alignment_per_fragment_' is not initialized in the constructor. [uninitMemberVar]
[protocols/motif_grafting/movers/MotifGraftMover.cc:96]: (warning) Member variable 'MotifGraftMover::gp_b_allow_repeat_same_graft_output_' is not initialized in the constructor. [uninitMemberVar]
[protocols/motif_grafting/movers/MotifGraftMover.cc:96]: (warning) Member variable 'MotifGraftMover::gp_b_full_motif_bb_alignment_' is not initialized in the constructor. [uninitMemberVar]
[protocols/motif_grafting/movers/MotifGraftMover.cc:96]: (warning) Member variable 'MotifGraftMover::gp_b_graft_only_hotspots_by_sidechain_replacement_' is not initialized in the constructor. [uninitMemberVar]
[protocols/motif_grafting/movers/MotifGraftMover.cc:96]: (warning) Member variable 'MotifGraftMover::gp_b_only_allow_if_C_point_match_aa_identity_' is not initialized in the constructor. [uninitMemberVar]
[protocols/motif_grafting/movers/MotifGraftMover.cc:96]: (warning) Member variable 'MotifGraftMover::gp_b_only_allow_if_N_point_match_aa_identity_' is not initialized in the constructor. [uninitMemberVar]
[protocols/motif_grafting/movers/MotifGraftMover.cc:96]: (warning) Member variable 'MotifGraftMover::gp_b_revert_graft_to_native_sequence_' is not initialized in the constructor. [uninitMemberVar]
[protocols/motif_grafting/movers/MotifGraftMover.hh:100]: (performance) Variable 'clash_score' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/motif_grafting/movers/MotifGraftMover.hh:101]: (performance) Variable 'v_indexes' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/motif_grafting/movers/MotifGraftMover.hh:97]: (performance) Variable 'scaffold_fragment_data' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/motif_grafting/movers/MotifGraftMover.hh:98]: (performance) Variable 'RMSD' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/motif_grafting/movers/MotifGraftMover.hh:99]: (performance) Variable 'motif_fragments_RMSD' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/motifs/LigandMotifSearch.cc:1470]: (style) Parameter 'motiflibrary' can be declared with const [constParameter]
[protocols/motifs/LigandMotifSearch.cc:380] -> [protocols/motifs/LigandMotifSearch.cc:487]: (style) Local variable 'lig_pos' shadows outer variable [shadowVariable]
[protocols/motifs/LigandMotifSearch.cc:381] -> [protocols/motifs/LigandMotifSearch.cc:488]: (style) Local variable 'lig_type' shadows outer variable [shadowVariable]
[protocols/motifs/LigandMotifSearch.cc:561] -> [protocols/motifs/LigandMotifSearch.cc:804]: (style) Local variable 'trip_atom_1' shadows outer variable [shadowVariable]
[protocols/motifs/LigandMotifSearch.cc:562] -> [protocols/motifs/LigandMotifSearch.cc:805]: (style) Local variable 'trip_atom_2' shadows outer variable [shadowVariable]
[protocols/motifs/LigandMotifSearch.cc:563] -> [protocols/motifs/LigandMotifSearch.cc:806]: (style) Local variable 'trip_atom_3' shadows outer variable [shadowVariable]
[protocols/motifs/LigandMotifSearch.cc:876] -> [protocols/motifs/LigandMotifSearch.cc:878]: (warning) Identical condition 'passed_quick_and_dirty', second condition is always false [identicalConditionAfterEarlyExit]
[protocols/motifs/Motif.cc:247]: (performance) Variable 'restype_name1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/motifs/Motif.cc:248]: (performance) Variable 'res1_atom1_name_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/motifs/Motif.cc:249]: (performance) Variable 'res1_atom2_name_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/motifs/Motif.cc:250]: (performance) Variable 'res1_atom3_name_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/motifs/Motif.cc:251]: (performance) Variable 'restype_name2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/motifs/Motif.cc:252]: (performance) Variable 'res2_atom1_name_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/motifs/Motif.cc:253]: (performance) Variable 'res2_atom2_name_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/motifs/Motif.cc:254]: (performance) Variable 'res2_atom3_name_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/motifs/Motif.cc:256]: (performance) Variable 'forward_jump_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/motifs/MotifSearch.cc:1003]: (style) Parameter 'motiflibrary' can be declared with const [constParameter]
[protocols/motifs/motif_utils.cc:300]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/motifs/motif_utils.cc:352]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/motifs/motif_utils.cc:443]: (style) Parameter 'flex_regions' can be declared with const [constParameter]
[protocols/motifs/motif_utils.cc:913]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/moves/ChangeFoldTreeMover.hh:53]: (performance) Function parameter 'fold_tree' should be passed by const reference. [passedByValue]
[protocols/moves/ChangeFoldTreeMover.hh:58]: (performance) Function parameter 'fold_tree' should be passed by const reference. [passedByValue]
[protocols/moves/DualMonteCarlo.cc:52]: (performance) Variable 'last_accepted_pose_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/moves/DualMonteCarlo.cc:53]: (performance) Variable 'lowest_score_pose_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/moves/DualMonteCarlo.cc:54]: (performance) Variable 'score_function_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/moves/FilterReporterMover.cc:27]: (performance) Variable 'filter_mover_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/moves/FilterReporterMover.cc:33]: (style) Parameter 'out' can be declared with const [constParameter]
[protocols/moves/FilterReporterMover.cc:39]: (performance) Variable 'filter_mover_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/moves/MoverContainer.hh:262]: (performance) Function parameter 'sele' should be passed by const reference. [passedByValue]
[protocols/moves/Mover.hh:100] -> [apps/public/design/zinc1_homodimer_design.cc:106]: (style) The function 'apply' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[protocols/moves/Mover.hh:100] -> [apps/public/design/zinc1_homodimer_setup.cc:70]: (style) The function 'apply' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[protocols/moves/Mover.hh:214] -> [apps/public/design/zinc1_homodimer_design.cc:468]: (style) The function 'get_name' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[protocols/moves/Mover.hh:214] -> [apps/public/design/zinc1_homodimer_setup.cc:164]: (style) The function 'get_name' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[protocols/moves/OutputMovers.cc:70]: (performance) Function parameter 'name_in' should be passed by const reference. [passedByValue]
[protocols/moves/PyMOLMover.cc:333]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[protocols/moves/PyMOLMover.cc:486]: (style) Variable 'energy' is assigned a value that is never used. [unreadVariable]
[protocols/moves/PyMOLMover.cc:492]: (performance) Function parameter 'energyType' should be passed by const reference. [passedByValue]
[protocols/moves/PyMOLMover.hh:353]: (performance) Function parameter 'new_pymol_name' should be passed by const reference. [passedByValue]
[protocols/moves/RampingMover.cc:169]: (style) C-style pointer casting [cstyleCast]
[protocols/moves/StructureRestrictor.cc:66]: (performance) Variable 'chain_map_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/moves/StructureRestrictor.cc:67]: (performance) Variable 'relevant_chains_fname_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/moves/WhileMover.cc:56]: (style) Variable 'cond_' can be declared with const [constVariable]
[protocols/mpi_refinement/Clusterer.cc:57]: (performance) Function parameter 'structs' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/MPI_Refine_Emperor.cc:164]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[protocols/mpi_refinement/MPI_Refine_Emperor.cc:312]: (performance) Function parameter 'add_algorithm' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/MPI_Refine_Master.cc:1201]: (style) Variable 'jt_last' is assigned a value that is never used. [unreadVariable]
[protocols/mpi_refinement/MPI_Refine_Master.cc:731]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[protocols/mpi_refinement/MPI_Refine_Master.cc:987]: (performance) Function parameter 'pick_strategy' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/MPI_Refine_Master.cc:988]: (performance) Function parameter 'objfunction' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/MPI_Refine_Master.hh:100]: (performance) Function parameter 'columnname' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/MPI_Refinement.cc:252]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/MPI_Refinement.cc:272]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/MPI_Refinement.cc:334]: (style) Parameter 'pss' can be declared with const [constParameter]
[protocols/mpi_refinement/MPI_Refinement.cc:500]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/MPI_Refinement.cc:591]: (performance) Function parameter 'scorename' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/MPI_Refinement.hh:100]: (performance) Function parameter 'new_ident' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/MPI_Refinement.hh:127]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/MPI_Refinement.hh:59]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/MPI_Refinement.hh:62]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/MPI_Refinement.hh:81]: (performance) Function parameter 'scorename' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/MPI_Refinement.hh:93]: (performance) Function parameter 'scorename' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/MPI_Refinement.hh:98]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/MultiObjective.cc:295]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/MultiObjective.cc:296]: (performance) Function parameter 'objname' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/MultiObjective.cc:840]: (performance) Function parameter 'measure' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/MultiObjective.cc:842]: (performance) Function parameter 'score_for_priority' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/MultiObjective.hh:101]: (performance) Function parameter 'inpose' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/MultiObjective.hh:110]: (performance) Function parameter 'value' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/MultiObjective.hh:47]: (performance) Function parameter 'prefix_in' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/MultiObjective.hh:48]: (performance) Function parameter 'objname' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/MultiObjective.hh:67]: (performance) Function parameter 'measure' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/MultiObjective.hh:69]: (performance) Function parameter 'score_for_priority' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/Scheduler.cc:446] -> [protocols/mpi_refinement/Scheduler.cc:479]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/mpi_refinement/Serial_Refine.hh:66]: (performance) Function parameter 'columnname' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/StructAvrgMover.cc:361]: (error) Out of bounds access of scores, index 'scores.size()' is out of bounds. [containerOutOfBoundsIndexExpression]
[protocols/mpi_refinement/util.cc:271]: (performance) Function parameter 'pose' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/util.cc:315]: (performance) Function parameter 'mm' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/util.cc:555]: (performance) Function parameter 'pose_frame' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/util.cc:825]: (performance) Function parameter 'pose0' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/util.cc:849]: (performance) Function parameter 'pose0' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/util.hh:144]: (performance) Function parameter 'pose_frame' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/util.hh:161] -> [protocols/mpi_refinement/Clusterer.cc:136]: (style) Local variable 'distance' shadows outer function [shadowFunction]
[protocols/mpi_refinement/util.hh:189]: (performance) Function parameter 'init_xyz' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/util.hh:197]: (performance) Function parameter 'pose0' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/util.hh:205]: (performance) Function parameter 'pose0' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/util.hh:92]: (performance) Function parameter 'pose' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/util.hh:99]: (performance) Function parameter 'mm' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/WorkUnit_Loop.cc:572]: (performance) Function parameter 'sfxn_name' should be passed by const reference. [passedByValue]
[protocols/mpi_refinement/WorkUnit_Loop.cc:812] -> [protocols/mpi_refinement/WorkUnit_Loop.cc:843]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/multistage_rosetta_scripts/cluster/metrics/SequenceMetric.hh:79]: (performance) Function parameter 'setting' should be passed by const reference. [passedByValue]
[protocols/multistage_rosetta_scripts/MRSJob.cc:45]: (warning) Member variable 'MRSJob::positive_scores_are_better_' is not initialized in the constructor. [uninitMemberVar]
[protocols/multistage_rosetta_scripts/MRSJobQueen.cc:147]: (warning) Return value of function std::remove_if() is not used. [ignoredReturnValue]
[protocols/multistage_rosetta_scripts/MRSJobQueen.cc:147]: (warning) Return value of std::remove_if() ignored. Elements remain in container. [uselessCallsRemove]
[protocols/multistate_design/PackingState.cc:83]: (warning) Assert statement calls a function which may have desired side effects: 'ig'. [assertWithSideEffect]
[protocols/multistate_design/PackingState.cc:83]: (warning) Assert statement calls a function which may have desired side effects: 'rotamersets'. [assertWithSideEffect]
[protocols/multistate_design/SingleState.cc:30]: (performance) Variable 'fitness_function_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/multistate_design/SingleState.cc:39]: (performance) Variable 'pose_p_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/multistate_design/SingleState.cc:41]: (performance) Variable 'fitness_function_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/multistate_design/SingleState.cc:47]: (performance) Variable 'pose_p_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/ncbb/NcbbDockDesignProtocol.cc:264]: (style) Variable 'hbs_seq_positions' is assigned a value that is never used. [unreadVariable]
[protocols/ncbb/NcbbDockDesignProtocol.cc:393]: (style) Variable 'pymover' is assigned a value that is never used. [unreadVariable]
[protocols/ncbb/oop/OopDockDesignProtocol.cc:460]: (style) Variable 'pymover' is assigned a value that is never used. [unreadVariable]
[protocols/ncbb/SecStructFinder.cc:158]: (performance) Function parameter 'alpha' should be passed by const reference. [passedByValue]
[protocols/ncbb/SecStructFinder.cc:245]: (error) When i==dihedral_pattern_.size(), dihedral_pattern_[i] is out of bounds. [stlOutOfBounds]
[protocols/ncbb/SecStructFinder.cc:257] -> [protocols/ncbb/SecStructFinder.cc:277]: (style) Local variable 'name' shadows outer variable [shadowVariable]
[protocols/ncbb/SecStructFinder.cc:258] -> [protocols/ncbb/SecStructFinder.cc:278]: (style) Local variable 'npatch' shadows outer variable [shadowVariable]
[protocols/ncbb/SecStructFinder.cc:259] -> [protocols/ncbb/SecStructFinder.cc:279]: (style) Local variable 'cpatch' shadows outer variable [shadowVariable]
[protocols/ncbb/SecStructFinder.cc:259]: (style) Unused variable: cpatch [unusedVariable]
[protocols/ncbb/SecStructFinder.cc:443] -> [protocols/ncbb/SecStructFinder.cc:463]: (style) Local variable 'score' shadows outer variable [shadowVariable]
[protocols/ncbb/SecStructMinimizeMultiFunc.cc:60]: (error) When i==dihedral_pattern_.size(), dihedral_pattern_[i] is out of bounds. [stlOutOfBounds]
[protocols/ncbb/SecStructMinimizeMultiFunc.hh:45]: (performance) Function parameter 'alpha_beta_pattern' should be passed by const reference. [passedByValue]
[protocols/ncbb/SecStructMinimizeMultiFunc.hh:46]: (performance) Function parameter 'dihedral_pattern' should be passed by const reference. [passedByValue]
[protocols/ncbb/util.cc:464]: (style) Variable 'score_fxn_' is assigned a value that is never used. [unreadVariable]
[protocols/ncbb/util.cc:595]: (style) Parameter 'attlist' can be declared with const [constParameter]
[protocols/network/cloud.cc:418]: (style) Variable 'res' is assigned a value that is never used. [unreadVariable]
[protocols/nmr/ParaNMRScoreMover.cc:187]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/nmr/ParaNMRScoreMover.cc:188]: (style) Parameter 'pcs_data' can be declared with const [constParameter]
[protocols/nmr/ParaNMRScoreMover.cc:358]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/nmr/ParaNMRScoreMover.cc:359]: (style) Parameter 'rdc_data' can be declared with const [constParameter]
[protocols/nmr/ParaNMRScoreMover.cc:541]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/nmr/ParaNMRScoreMover.cc:542]: (style) Parameter 'pre_data' can be declared with const [constParameter]
[protocols/nmr/ParaNMRScoreMover.cc:92]: (performance) Variable 'sfxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/nmr/pcs/PCSLigandTransformMover.cc:205]: (warning) Member variable 'PCSLigandTransformMover::chain_' is not assigned a value in 'PCSLigandTransformMover::operator='. [operatorEqVarError]
[protocols/nmr/pre/PREMover.cc:111]: (performance) Variable 'sfxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/nmr/pre/PREMover.cc:149]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[protocols/noesy_assign/CrossPeak.cc:391]: (style) Variable 'params' is assigned a value that is never used. [unreadVariable]
[protocols/noesy_assign/CrossPeakInfo.hh:53]: (warning) Member variable 'CrossPeakInfo::exp_hash_' is not initialized in the constructor. [uninitMemberVar]
[protocols/noesy_assign/CrossPeakInfo.hh:72]: (performance) Function parameter 'label' should be passed by const reference. [passedByValue]
[protocols/noesy_assign/CrossPeakInfo.hh:76]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[protocols/noesy_assign/CrossPeakList.cc:160] -> [protocols/noesy_assign/CrossPeakList.cc:170]: (style) Local variable 'filename' shadows outer variable [shadowVariable]
[protocols/noesy_assign/CrossPeakList.impl.hh:78] -> [protocols/noesy_assign/CrossPeakList.impl.hh:87]: (style) Local variable 'pose' shadows outer variable [shadowVariable]
[protocols/noesy_assign/CrossPeakList.impl.hh:80] -> [protocols/noesy_assign/CrossPeakList.impl.hh:89]: (style) Local variable 'jumps' shadows outer variable [shadowVariable]
[protocols/noesy_assign/DistanceScoreMover.cc:170] -> [protocols/noesy_assign/DistanceScoreMover.cc:238]: (style) Local variable 'doit' shadows outer variable [shadowVariable]
[protocols/noesy_assign/Exceptions.hh:44]: (performance) Function parameter 'atom' should be passed by const reference. [passedByValue]
[protocols/noesy_assign/FragsToAtomDist.hh:109]: (performance) Function parameter 'atom1' should be passed by const reference. [passedByValue]
[protocols/noesy_assign/FragsToAtomDist.hh:110]: (performance) Function parameter 'atom2' should be passed by const reference. [passedByValue]
[protocols/noesy_assign/MethylNames.hh:72] -> [protocols/noesy_assign/MethylNames.cc:101]: (warning) Function 'add_methyl' argument order different: declaration 'rosetta, methyl' definition 'methyl, rosetta' [funcArgOrderDifferent]
[protocols/noesy_assign/NoesyModule.cc:131] -> [protocols/noesy_assign/CrossPeakList.impl.hh:105]: (style) Local variable 'tr' shadows outer variable [shadowVariable]
[protocols/noesy_assign/NoesyModule.cc:131] -> [protocols/noesy_assign/CrossPeakList.impl.hh:65]: (style) Local variable 'tr' shadows outer variable [shadowVariable]
[protocols/noesy_assign/PeakAssignmentParameters.hh:49]: (warning) Member variable 'PeakAssignmentParameters::atom_dependent_calibration_' is not initialized in the constructor. [uninitMemberVarPrivate]
[protocols/noesy_assign/PeakAssignmentParameters.hh:49]: (warning) Member variable 'PeakAssignmentParameters::calibration_eliminate_' is not initialized in the constructor. [uninitMemberVarPrivate]
[protocols/noesy_assign/PeakAssignmentParameters.hh:49]: (warning) Member variable 'PeakAssignmentParameters::calibration_ignore_eliminated_peaks_' is not initialized in the constructor. [uninitMemberVarPrivate]
[protocols/noesy_assign/PeakAssignmentParameters.hh:49]: (warning) Member variable 'PeakAssignmentParameters::calibration_use_median_' is not initialized in the constructor. [uninitMemberVarPrivate]
[protocols/noesy_assign/PeakAssignmentParameters.hh:49]: (warning) Member variable 'PeakAssignmentParameters::ignore_resonancefile_intensities_' is not initialized in the constructor. [uninitMemberVarPrivate]
[protocols/noesy_assign/PeakAssignmentParameters.hh:49]: (warning) Member variable 'PeakAssignmentParameters::ignore_resonancefile_tolerances_' is not initialized in the constructor. [uninitMemberVarPrivate]
[protocols/noesy_assign/PeakAssignmentParameters.hh:49]: (warning) Member variable 'PeakAssignmentParameters::map_to_cen_atom_' is not initialized in the constructor. [uninitMemberVarPrivate]
[protocols/noesy_assign/PeakAssignmentParameters.hh:49]: (warning) Member variable 'PeakAssignmentParameters::network_allow_same_residue_connect_' is not initialized in the constructor. [uninitMemberVarPrivate]
[protocols/noesy_assign/PeakAssignmentParameters.hh:49]: (warning) Member variable 'PeakAssignmentParameters::network_include_reverse_dir_' is not initialized in the constructor. [uninitMemberVarPrivate]
[protocols/noesy_assign/PeakAssignmentParameters.hh:49]: (warning) Member variable 'PeakAssignmentParameters::network_use_all_covalent_atoms_' is not initialized in the constructor. [uninitMemberVarPrivate]
[protocols/noesy_assign/PeakAssignmentParameters.hh:49]: (warning) Member variable 'PeakAssignmentParameters::no_network_' is not initialized in the constructor. [uninitMemberVarPrivate]
[protocols/noesy_assign/PeakAssignmentParameters.hh:49]: (warning) Member variable 'PeakAssignmentParameters::use_local_distviol_' is not initialized in the constructor. [uninitMemberVarPrivate]
[protocols/noesy_assign/PeakAssignmentResidueMap.cc:112] -> [protocols/noesy_assign/PeakAssignmentResidueMap.cc:115]: (error) Iterator 'it' used after element has been erased. [eraseDereference]
[protocols/noesy_assign/PeakAssignmentResidueMap.cc:210]: (style) Parameter 'cpl' can be declared with const [constParameter]
[protocols/noesy_assign/PeakAssignmentResidueMap.cc:361]: (style) Unused variable: intra_residue_NOEs_bg [unusedVariable]
[protocols/noesy_assign/PeakCalibrator.cc:104]: (style) Variable 'params' is assigned a value that is never used. [unreadVariable]
[protocols/noesy_assign/PeakFileFormat.cc:605]: (style) Variable 'weight' is assigned a value that is never used. [unreadVariable]
[protocols/noesy_assign/PeakFileFormat.cc:607]: (style) Variable 'weight' is assigned a value that is never used. [unreadVariable]
[protocols/noesy_assign/PeakFileFormat.cc:76]: (warning) Member variable 'PeakFileFormat::write_atom_names_' is not initialized in the constructor. [uninitMemberVar]
[protocols/noesy_assign/PeakFileFormat.hh:75]: (performance) Function parameter 'str' should be passed by const reference. [passedByValue]
[protocols/noesy_assign/ResonanceList.cc:121]: (performance) Inefficient usage of string::find() in condition; string::starts_with() could be faster. [stlIfStrFind]
[protocols/noesy_assign/StructureDependentPeakCalibrator.cc:113] -> [protocols/noesy_assign/StructureDependentPeakCalibrator.cc:128]: (style) Local variable 'pose_ct' shadows outer variable [shadowVariable]
[protocols/noesy_assign/StructureDependentPeakCalibrator.cc:128] -> [protocols/noesy_assign/StructureDependentPeakCalibrator.cc:135]: (style) Local variable 'pose_ct' shadows outer variable [shadowVariable]
[protocols/normalmode/NormalMode.cc:51]: (performance) Variable 'k_uniform_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/normalmode/NormalMode.cc:53]: (performance) Variable 'mode_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/normalmode/NormalMode.cc:54]: (performance) Variable 'dist2_cut_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/normalmode/NormalMode.cc:61]: (performance) Function parameter 'mode' should be passed by const reference. [passedByValue]
[protocols/normalmode/NormalMode.cc:65]: (performance) Variable 'k_uniform_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/normalmode/NormalMode.cc:67]: (performance) Variable 'mode_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/normalmode/NormalMode.cc:68]: (performance) Variable 'dist2_cut_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/normalmode/NormalMode.hh:55]: (performance) Function parameter 'mode' should be passed by const reference. [passedByValue]
[protocols/normalmode/NormalModeMinimizer.cc:70]: (performance) Variable 'options_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/normalmode/NormalModeMultiFunc.cc:190]: (style) Variable 'dof_nodes' is assigned a value that is never used. [unreadVariable]
[protocols/normalmode/NormalModeMultiFunc.cc:420]: (style) The scope of the variable 'check_score_components_verbose' can be reduced. [variableScope]
[protocols/normalmode/NormalModeMultiFunc.cc:425]: (style) Condition '!debug_inaccurateG' is always true [knownConditionTrueFalse]
[protocols/normalmode/NormalModeRelaxMover.hh:106]: (performance) Function parameter 'select_option' should be passed by const reference. [passedByValue]
[protocols/normalmode/NormalModeRelaxMover.hh:51]: (performance) Function parameter 'relaxmode' should be passed by const reference. [passedByValue]
[protocols/normalmode/NormalModeRelaxMover.hh:97]: (performance) Function parameter 'mode' should be passed by const reference. [passedByValue]
[protocols/optimize_weights/IterativeOptEDriver.cc:1321] -> [protocols/optimize_weights/IterativeOptEDriver.cc:1331]: (style) Local variable 'ssd' shadows outer variable [shadowVariable]
[protocols/optimize_weights/IterativeOptEDriver.cc:2060] -> [protocols/optimize_weights/IterativeOptEDriver.cc:2110]: (style) Local variable 'particles' shadows outer variable [shadowVariable]
[protocols/optimize_weights/IterativeOptEDriver.cc:2077] -> [protocols/optimize_weights/IterativeOptEDriver.cc:2115]: (style) Local variable 'min_starttime' shadows outer variable [shadowVariable]
[protocols/optimize_weights/IterativeOptEDriver.cc:2086] -> [protocols/optimize_weights/IterativeOptEDriver.cc:2124]: (style) Local variable 'min_stoptime' shadows outer variable [shadowVariable]
[protocols/optimize_weights/IterativeOptEDriver.cc:2093] -> [protocols/optimize_weights/IterativeOptEDriver.cc:2131]: (style) Local variable 'p' shadows outer variable [shadowVariable]
[protocols/optimize_weights/IterativeOptEDriver.cc:234]: (performance) Variable 'task_factory_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/optimize_weights/IterativeOptEDriver.cc:2506] -> [protocols/optimize_weights/IterativeOptEDriver.cc:2775]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/optimize_weights/IterativeOptEDriver.cc:3111]: (style) Variable 'cross_entropy' is assigned a value that is never used. [unreadVariable]
[protocols/optimize_weights/NestedEnergyTermOptEData.cc:459] -> [protocols/optimize_weights/NestedEnergyTermOptEData.cc:466]: (style) Local variable 'ss' shadows outer variable [shadowVariable]
[protocols/optimize_weights/NestedEnergyTermOptEData.cc:459] -> [protocols/optimize_weights/NestedEnergyTermOptEData.cc:472]: (style) Local variable 'ss' shadows outer variable [shadowVariable]
[protocols/optimize_weights/OptEData.cc:1209]: (warning) Member variable 'PNatRotOptEPositionData::aa_' is not initialized in the constructor. [uninitMemberVar]
[protocols/optimize_weights/OptEData.cc:1209]: (warning) Member variable 'PNatRotOptEPositionData::n_wells_' is not initialized in the constructor. [uninitMemberVar]
[protocols/optimize_weights/OptEData.cc:533] -> [protocols/optimize_weights/OptEData.cc:542]: (style) Local variable 'ss' shadows outer variable [shadowVariable]
[protocols/optimize_weights/OptEData.cc:533] -> [protocols/optimize_weights/OptEData.cc:548]: (style) Local variable 'ss' shadows outer variable [shadowVariable]
[protocols/optimize_weights/OptEData.hh:57]: (style) Parameter 'fixed_data_vec_in' can be declared with const [constParameter]
[protocols/pack_daemon/DynamicAggregateFunction.cc:1518]: (style) Condition '!colon_found' is always true [knownConditionTrueFalse]
[protocols/pack_daemon/DynamicAggregateFunction.hh:790]: (style) Unused private function: 'DynamicAggregateFunctionDriver::distribute_jobs_to_remote_daemons' [unusedPrivateFunction]
[protocols/pack_daemon/PackDaemon.cc:603] -> [protocols/pack_daemon/PackDaemon.cc:641]: (style) Local variable 'ii' shadows outer variable [shadowVariable]
[protocols/parser/FragmentReader.cc:59]: (warning) Member variable 'FragmentReader::use_abego_' is not initialized in the constructor. [uninitMemberVar]
[protocols/peptide_deriver/PeptideDeriverBasicStreamOutputter.cc:40]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[protocols/peptide_deriver/PeptideDeriverBasicStreamOutputter.cc:42]: (performance) Variable 'prefix_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/peptide_deriver/PeptideDeriverBasicStreamOutputter.cc:50]: (performance) Variable 'prefix_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/peptide_deriver/PeptideDeriverMarkdownStreamOutputter.cc:44]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[protocols/peptide_deriver/PeptideDeriverMarkdownStreamOutputter.cc:44]: (warning) Member variable 'PeptideDeriverMarkdownStreamOutputter::current_partner_chain_letter_' is not initialized in the constructor. [uninitMemberVar]
[protocols/peptide_deriver/PeptideDeriverMarkdownStreamOutputter.cc:44]: (warning) Member variable 'PeptideDeriverMarkdownStreamOutputter::current_receptor_chain_letter_' is not initialized in the constructor. [uninitMemberVar]
[protocols/peptide_deriver/PeptideDeriverMarkdownStreamOutputter.cc:46]: (performance) Variable 'prefix_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/peptide_deriver/PeptideDeriverMarkdownStreamOutputter.cc:52]: (warning) Member variable 'PeptideDeriverMarkdownStreamOutputter::current_partner_chain_letter_' is not initialized in the constructor. [uninitMemberVar]
[protocols/peptide_deriver/PeptideDeriverMarkdownStreamOutputter.cc:52]: (warning) Member variable 'PeptideDeriverMarkdownStreamOutputter::current_receptor_chain_letter_' is not initialized in the constructor. [uninitMemberVar]
[protocols/peptide_deriver/PeptideDeriverMarkdownStreamOutputter.cc:54]: (performance) Variable 'prefix_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/peptide_deriver/PeptideDeriverOutputterContainer.cc:36]: (performance) Variable 'list_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/peptide_deriver/PeptideDeriverPoseOutputter.cc:44]: (warning) Member variable 'PeptideDeriverPoseOutputter::current_partner_chain_letter_' is not initialized in the constructor. [uninitMemberVar]
[protocols/peptide_deriver/PeptideDeriverPoseOutputter.cc:44]: (warning) Member variable 'PeptideDeriverPoseOutputter::current_receptor_chain_letter_' is not initialized in the constructor. [uninitMemberVar]
[protocols/peptide_deriver/PeptideDeriverPoseOutputter.cc:44]: (warning) Member variable 'PeptideDeriverPoseOutputter::is_chain_pair_new_' is not initialized in the constructor. [uninitMemberVar]
[protocols/peptide_deriver/PeptideDeriverPoseOutputter.cc:54]: (warning) Member variable 'PeptideDeriverPoseOutputter::current_partner_chain_letter_' is not initialized in the constructor. [uninitMemberVar]
[protocols/peptide_deriver/PeptideDeriverPoseOutputter.cc:54]: (warning) Member variable 'PeptideDeriverPoseOutputter::current_receptor_chain_letter_' is not initialized in the constructor. [uninitMemberVar]
[protocols/peptide_deriver/PeptideDeriverPoseOutputter.cc:59]: (performance) Variable 'scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pmut_scan/AlterSpecDisruptionDriver.cc:40]: (performance) Function parameter 'list_file' should be passed by const reference. [passedByValue]
[protocols/pmut_scan/Mutant.cc:98]: (style) Parameter 'md' can be declared with const [constParameter]
[protocols/pmut_scan/PointMutScanDriver.cc:327] -> [protocols/pmut_scan/PointMutScanDriver.cc:368]: (style) Local variable 'm' shadows outer variable [shadowVariable]
[protocols/pmut_scan/PointMutScanDriver.cc:411] -> [protocols/pmut_scan/PointMutScanDriver.cc:421]: (style) Local variable 'line' shadows outer variable [shadowVariable]
[protocols/pmut_scan/PointMutScanDriver.cc:697] -> [protocols/pmut_scan/PointMutScanDriver.cc:705]: (style) Local variable 'ii' shadows outer variable [shadowVariable]
[protocols/pockets/Fingerprint.cc:110]: (style) Variable 'residue_name' is assigned a value that is never used. [unreadVariable]
[protocols/pockets/Fingerprint.cc:1573]: (style) Variable 'distant_origin' is assigned a value that is never used. [unreadVariable]
[protocols/pockets/Fingerprint.cc:1576]: (style) Variable 'distant_origin' is assigned a value that is never used. [unreadVariable]
[protocols/pockets/Fingerprint.cc:1783]: (style) Parameter 'fp' can be declared with const [constParameter]
[protocols/pockets/Fingerprint.cc:2044] -> [protocols/pockets/Fingerprint.cc:2047]: (style) Condition '!square' is always true [knownConditionTrueFalse]
[protocols/pockets/Fingerprint.cc:2198]: (style) Statements following return, break, continue, goto or throw will never be executed. [unreachableCode]
[protocols/pockets/Fingerprint.cc:2245]: (style) Statements following return, break, continue, goto or throw will never be executed. [unreachableCode]
[protocols/pockets/GenPharmacophore.cc:167]: (style) Parameter 'mol1' can be declared with const [constParameter]
[protocols/pockets/GenPharmacophore.cc:503] -> [protocols/pockets/GenPharmacophore.cc:520]: (style) Expression is always true because 'else if' condition is opposite to previous condition at line 503. [multiCondition]
[protocols/pockets/GenPharmacophore.cc:566]: (warning) Assert statement calls a function which may have desired side effects: 'energies'. [assertWithSideEffect]
[protocols/pockets/GenPharmacophore.hh:59]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[protocols/pockets/PocketConstraint.cc:116]: (warning) Member variable 'PocketConstraint::dumppdb_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pockets/PocketConstraint.cc:173]: (performance) Variable 'seqpos_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pockets/PocketConstraint.cc:174]: (performance) Variable 'totalres_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pockets/PocketConstraint.cc:175]: (performance) Variable 'pocketgrid_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pockets/PocketConstraint.cc:254] -> [protocols/pockets/PocketConstraint.cc:266]: (style) Local variable 'largestPocketVol' shadows outer variable [shadowVariable]
[protocols/pockets/PocketExemplarMultifunc.hh:38]: (performance) Function parameter 'input_pdb_name' should be passed by const reference. [passedByValue]
[protocols/pockets/PocketExemplarMultifunc.hh:38]: (performance) Function parameter 'resid' should be passed by const reference. [passedByValue]
[protocols/pockets/PocketGrid.cc:1406]: (style) Variable 'tmp' is assigned a value that is never used. [unreadVariable]
[protocols/pockets/PocketGrid.cc:156]: (performance) Variable 'points_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pockets/PocketGrid.cc:160]: (performance) Variable 'maxX' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pockets/PocketGrid.cc:160]: (performance) Variable 'maxY' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pockets/PocketGrid.cc:160]: (performance) Variable 'maxZ' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pockets/PocketGrid.cc:161]: (performance) Variable 'minX' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pockets/PocketGrid.cc:161]: (performance) Variable 'minY' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pockets/PocketGrid.cc:161]: (performance) Variable 'minZ' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pockets/PocketGrid.cc:162]: (performance) Variable 'step' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pockets/PocketGrid.cc:1864] -> [protocols/pockets/PocketGrid.cc:1913]: (style) Condition 'minipock' is always true [knownConditionTrueFalse]
[protocols/pockets/PocketGrid.cc:2743] -> [protocols/pockets/PocketGrid.cc:2825]: (style) Local variable 'j' shadows outer variable [shadowVariable]
[protocols/pockets/PocketGrid.cc:2743] -> [protocols/pockets/PocketGrid.cc:2954]: (style) Local variable 'j' shadows outer variable [shadowVariable]
[protocols/pockets/PocketGrid.cc:2743] -> [protocols/pockets/PocketGrid.cc:2973]: (style) Local variable 'j' shadows outer variable [shadowVariable]
[protocols/pockets/PocketGrid.cc:2771] -> [protocols/pockets/PocketGrid.cc:2852]: (style) Local variable 'offset' shadows outer variable [shadowVariable]
[protocols/pockets/PocketGrid.cc:2877] -> [protocols/pockets/PocketGrid.cc:3000]: (style) Local variable 'offset' shadows outer variable [shadowVariable]
[protocols/pockets/PocketGrid.cc:2923] -> [protocols/pockets/PocketGrid.cc:2953]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/pockets/PocketGrid.cc:3428]: (style) Condition 'counter2<10' is always true [knownConditionTrueFalse]
[protocols/pockets/PocketGrid.cc:351]: (performance) Variable 'points_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pockets/PocketGrid.cc:355]: (performance) Variable 'maxX' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pockets/PocketGrid.cc:355]: (performance) Variable 'maxY' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pockets/PocketGrid.cc:355]: (performance) Variable 'maxZ' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pockets/PocketGrid.cc:356]: (performance) Variable 'minX' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pockets/PocketGrid.cc:356]: (performance) Variable 'minY' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pockets/PocketGrid.cc:356]: (performance) Variable 'minZ' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pockets/PocketGrid.cc:357]: (performance) Variable 'step' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pockets/PocketGrid.cc:4633] -> [protocols/pockets/PocketGrid.cc:4636]: (style) Condition 'inFile' is always true [knownConditionTrueFalse]
[protocols/pockets/PocketGrid.cc:4997]: (style) Variable 'found_surface' is assigned a value that is never used. [unreadVariable]
[protocols/pockets/PocketGrid.cc:5240]: (style) Variable 'found_surface' is assigned a value that is never used. [unreadVariable]
[protocols/pockets/PocketGrid.cc:5284] -> [protocols/pockets/PocketGrid.cc:5282] -> [protocols/pockets/PocketGrid.cc:5283]: (error) Comparison of iterators from containers 'eggshell_coord_list_' and 'extra_coord_list_'. [iteratorsCmp1]
[protocols/pockets/PocketGrid.cc:5908]: (performance) Variable 'xdim_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pockets/PocketGrid.cc:5909]: (performance) Variable 'xcorn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pockets/PocketGrid.cc:5910]: (performance) Variable 'ydim_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pockets/PocketGrid.cc:5911]: (performance) Variable 'ycorn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pockets/PocketGrid.cc:5912]: (performance) Variable 'zdim_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pockets/PocketGrid.cc:5913]: (performance) Variable 'zcorn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pockets/PocketGrid.cc:5914]: (performance) Variable 'stepSize_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_creation/MakeJunctionsMover.cc:109]: (warning) Member variable 'MakeJunctionsMover::chain_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_creation/MakeJunctionsMover.cc:109]: (warning) Member variable 'MakeJunctionsMover::pdb_cache_bool_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_creation/MakeJunctionsMover.cc:203]: (performance) Function parameter 'attach_description' should be passed by const reference. [passedByValue]
[protocols/pose_creation/MakeJunctionsMover.hh:45]: (performance) Function parameter 'c_term_stack_i' should be passed by const reference. [passedByValue]
[protocols/pose_creation/MakeJunctionsMover.hh:45]: (performance) Function parameter 'name_i' should be passed by const reference. [passedByValue]
[protocols/pose_creation/MakeJunctionsMover.hh:45]: (performance) Function parameter 'n_term_stack_i' should be passed by const reference. [passedByValue]
[protocols/pose_creation/MakeJunctionsMover.hh:45]: (performance) Function parameter 'start_struct_i' should be passed by const reference. [passedByValue]
[protocols/pose_creation/MakeJunctionsMover.hh:46]: (performance) Variable 'name' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_creation/MakeJunctionsMover.hh:47]: (performance) Variable 'n_term_stack' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_creation/MakeJunctionsMover.hh:48]: (performance) Variable 'c_term_stack' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_creation/MakeJunctionsMover.hh:49]: (performance) Variable 'start_struct' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_creation/MakeJunctionsMover.hh:50]: (performance) Variable 'n_term_pose' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_creation/MakeJunctionsMover.hh:51]: (performance) Variable 'c_term_pose' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_creation/MergePDBatOverlapMover.cc:100]: (warning) Member variable 'MergePDBatOverlapMover::attachment_chain_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_creation/MergePDBatOverlapMover.cc:100]: (warning) Member variable 'MergePDBatOverlapMover::minimize_after_overlap_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_creation/MergePDBMover.cc:110]: (warning) Member variable 'MergePDBMover::detect_disulf_before_repack_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_creation/MergePDBMover.cc:110]: (warning) Member variable 'MergePDBMover::do_design_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_creation/MergePDBMover.cc:110]: (warning) Member variable 'MergePDBMover::do_minimize_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_creation/MergePDBMover.cc:110]: (warning) Member variable 'MergePDBMover::output_only_first_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_creation/MergePDBMover.cc:110]: (warning) Member variable 'MergePDBMover::output_overlap_positions_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_creation/MergePDBMover.hh:48]: (performance) Variable 'start_overlap_xmlPose' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_creation/MergePDBMover.hh:49]: (performance) Variable 'end_overlap_xmlPose' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_creation/MergePDBMover.hh:50]: (performance) Variable 'start_overlap_pose' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_creation/MergePDBMover.hh:51]: (performance) Variable 'end_overlap_pose' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_creation/MergePDBMover.hh:53]: (performance) Variable 'output_poseOP' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_creation/RepeatPropagationMover.cc:115]: (warning) Member variable 'RepeatPropagationMover::deal_with_length_change_scar_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_creation/RepeatPropagationMover.cc:115]: (warning) Member variable 'RepeatPropagationMover::extract_repeat_info_from_pose_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_creation/RepeatPropagationMover.cc:115]: (warning) Member variable 'RepeatPropagationMover::ideal_repeat_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_creation/RepeatPropagationMover.cc:115]: (warning) Member variable 'RepeatPropagationMover::maintain_cap_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_creation/RepeatPropagationMover.cc:115]: (warning) Member variable 'RepeatPropagationMover::maintain_cap_sequence_only_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_creation/RepeatPropagationMover.cc:115]: (warning) Member variable 'RepeatPropagationMover::maintain_ligand_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_creation/RepeatPropagationMover.cc:115]: (warning) Member variable 'RepeatPropagationMover::repeat_without_replacing_pose_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_creation/RepeatPropagationMover.cc:123] -> [protocols/pose_creation/RepeatPropagationMover.cc:128]: (style) Variable 'maintain_cap_' is reassigned a value before the old one has been used. [redundantAssignment]
[protocols/pose_creation/RepeatPropagationMover.cc:581]: (style) Variable 'loop_phi' is assigned a value that is never used. [unreadVariable]
[protocols/pose_creation/RepeatPropagationMover.cc:582]: (style) Variable 'loop_psi' is assigned a value that is never used. [unreadVariable]
[protocols/pose_creation/RepeatPropagationMover.cc:583]: (style) Variable 'loop_omega' is assigned a value that is never used. [unreadVariable]
[protocols/pose_creation/RepeatPropagationMover.cc:584]: (style) Variable 'loop_secstruct' is assigned a value that is never used. [unreadVariable]
[protocols/pose_creation/SliceToMiniProteinMover.cc:124]: (style) Condition '!reassign_short_terminal_loop_' is always false [knownConditionTrueFalse]
[protocols/pose_creation/SliceToMiniProteinMover.hh:57]: (performance) Function parameter 'pose_i' should be passed by const reference. [passedByValue]
[protocols/pose_creation/SliceToMiniProteinMover.hh:58]: (performance) Variable 'pose' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_creation/SliceToMiniProteinMover.hh:59]: (performance) Variable 'start_res' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_creation/SliceToMiniProteinMover.hh:60]: (performance) Variable 'end_res' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_length_moves/AnalyzeLoopModeling.cc:152]: (performance) Function parameter 'pose' should be passed by const reference. [passedByValue]
[protocols/pose_length_moves/AnalyzeLoopModeling.cc:178]: (style) The scope of the variable 'resAdjustmentStartLow' can be reduced. [variableScope]
[protocols/pose_length_moves/AnalyzeLoopModeling.cc:178]: (style) Variable 'resAdjustmentStartLow' is assigned a value that is never used. [unreadVariable]
[protocols/pose_length_moves/AnalyzeLoopModeling.cc:179]: (style) The scope of the variable 'resAdjustmentStartHigh' can be reduced. [variableScope]
[protocols/pose_length_moves/AnalyzeLoopModeling.cc:179]: (style) Variable 'resAdjustmentStartHigh' is assigned a value that is never used. [unreadVariable]
[protocols/pose_length_moves/AnalyzeLoopModeling.cc:180]: (style) The scope of the variable 'resAdjustmentStopLow' can be reduced. [variableScope]
[protocols/pose_length_moves/AnalyzeLoopModeling.cc:180]: (style) Variable 'resAdjustmentStopLow' is assigned a value that is never used. [unreadVariable]
[protocols/pose_length_moves/AnalyzeLoopModeling.cc:181]: (style) The scope of the variable 'resAdjustmentStopHigh' can be reduced. [variableScope]
[protocols/pose_length_moves/AnalyzeLoopModeling.cc:181]: (style) Variable 'resAdjustmentStopHigh' is assigned a value that is never used. [unreadVariable]
[protocols/pose_length_moves/AnalyzeLoopModeling.cc:182]: (style) The scope of the variable 'resAdjustmentStartLow_sheet' can be reduced. [variableScope]
[protocols/pose_length_moves/AnalyzeLoopModeling.cc:182]: (style) Variable 'resAdjustmentStartLow_sheet' is assigned a value that is never used. [unreadVariable]
[protocols/pose_length_moves/AnalyzeLoopModeling.cc:183]: (style) The scope of the variable 'resAdjustmentStartHigh_sheet' can be reduced. [variableScope]
[protocols/pose_length_moves/AnalyzeLoopModeling.cc:183]: (style) Variable 'resAdjustmentStartHigh_sheet' is assigned a value that is never used. [unreadVariable]
[protocols/pose_length_moves/AnalyzeLoopModeling.cc:184]: (style) The scope of the variable 'resAdjustmentStopLow_sheet' can be reduced. [variableScope]
[protocols/pose_length_moves/AnalyzeLoopModeling.cc:184]: (style) Variable 'resAdjustmentStopLow_sheet' is assigned a value that is never used. [unreadVariable]
[protocols/pose_length_moves/AnalyzeLoopModeling.cc:185]: (style) The scope of the variable 'resAdjustmentStopHigh_sheet' can be reduced. [variableScope]
[protocols/pose_length_moves/AnalyzeLoopModeling.cc:185]: (style) Variable 'resAdjustmentStopHigh_sheet' is assigned a value that is never used. [unreadVariable]
[protocols/pose_length_moves/AnalyzeLoopModeling.cc:68]: (warning) Member variable 'AnalyzeLoopModeling::SSHashedFragmentStore_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/AnalyzeLoopModeling.cc:82]: (style) Variable 'endLoop' is assigned a value that is never used. [unreadVariable]
[protocols/pose_length_moves/ConnectChainsMover.cc:62]: (warning) Member variable 'ConnectChainsMover::resAdjustmentStartHigh_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/ConnectChainsMover.cc:62]: (warning) Member variable 'ConnectChainsMover::resAdjustmentStartHigh_sheet_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/ConnectChainsMover.cc:62]: (warning) Member variable 'ConnectChainsMover::resAdjustmentStartLow_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/ConnectChainsMover.cc:62]: (warning) Member variable 'ConnectChainsMover::resAdjustmentStartLow_sheet_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/ConnectChainsMover.cc:62]: (warning) Member variable 'ConnectChainsMover::resAdjustmentStopHigh_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/ConnectChainsMover.cc:62]: (warning) Member variable 'ConnectChainsMover::resAdjustmentStopHigh_sheet_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/ConnectChainsMover.cc:62]: (warning) Member variable 'ConnectChainsMover::resAdjustmentStopLow_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/ConnectChainsMover.cc:62]: (warning) Member variable 'ConnectChainsMover::resAdjustmentStopLow_sheet_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/ConnectChainsMover.hh:50]: (performance) Variable 'rmsd' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_length_moves/ConnectChainsMover.hh:51]: (performance) Variable 'poseOP' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_length_moves/ConnectChainsMover.hh:61]: (performance) Function parameter 'pose' should be passed by const reference. [passedByValue]
[protocols/pose_length_moves/FixAllLoopsMover.cc:62]: (warning) Member variable 'FixAllLoopsMover::ideal_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/FixAllLoopsMover.cc:62]: (warning) Member variable 'FixAllLoopsMover::refix_loops_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/FixAllLoopsMover.cc:62]: (warning) Member variable 'FixAllLoopsMover::reject_failed_loops_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/FixAllLoopsMover.cc:62]: (warning) Member variable 'FixAllLoopsMover::resAdjustmentStartHigh_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/FixAllLoopsMover.cc:62]: (warning) Member variable 'FixAllLoopsMover::resAdjustmentStartHigh_sheet_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/FixAllLoopsMover.cc:62]: (warning) Member variable 'FixAllLoopsMover::resAdjustmentStartLow_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/FixAllLoopsMover.cc:62]: (warning) Member variable 'FixAllLoopsMover::resAdjustmentStartLow_sheet_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/FixAllLoopsMover.cc:62]: (warning) Member variable 'FixAllLoopsMover::resAdjustmentStopHigh_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/FixAllLoopsMover.cc:62]: (warning) Member variable 'FixAllLoopsMover::resAdjustmentStopHigh_sheet_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/FixAllLoopsMover.cc:62]: (warning) Member variable 'FixAllLoopsMover::resAdjustmentStopLow_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/FixAllLoopsMover.cc:62]: (warning) Member variable 'FixAllLoopsMover::resAdjustmentStopLow_sheet_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/FixAllLoopsMover.cc:62]: (warning) Member variable 'FixAllLoopsMover::SSHashedFragmentStore_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/FixAllLoopsMover.cc:71]: (style) Variable 'endLoop' is assigned a value that is never used. [unreadVariable]
[protocols/pose_length_moves/InsertResMover.cc:129]: (style) Variable 'backupFt' is assigned a value that is never used. [unreadVariable]
[protocols/pose_length_moves/InsertResMover.cc:71]: (warning) Member variable 'InsertResMover::grow_toward_Nterm_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/InsertResMover.cc:71]: (warning) Member variable 'InsertResMover::ideal_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/InsertResMover.cc:71]: (warning) Member variable 'InsertResMover::useInputAngles_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:1130] -> [protocols/pose_length_moves/NearNativeLoopCloser.cc:1132]: (style) Variable 'chainBeforeLoop_' is reassigned a value before the old one has been used. [redundantAssignment]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:1131] -> [protocols/pose_length_moves/NearNativeLoopCloser.cc:1133]: (style) Variable 'chainAfterLoop_' is reassigned a value before the old one has been used. [redundantAssignment]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:128]: (warning) Member variable 'PossibleLoop::SSHashedFragmentStore_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:132]: (performance) Variable 'loopLength_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:133]: (performance) Variable 'resBeforeLoop_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:134]: (performance) Variable 'fullLength_resBeforeLoop_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:135]: (performance) Variable 'resAfterLoop_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:138]: (performance) Variable 'insertedBeforeLoopRes_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:139]: (performance) Variable 'insertedAfterLoopRes_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:140]: (performance) Variable 'original_atom_type_fullLengthPoseOP_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:141]: (performance) Variable 'fullLengthPoseOP_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:143]: (performance) Variable 'stub_rmsd_match_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:144]: (performance) Variable 'uncached_stub_rmsd_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:145]: (performance) Variable 'final_rmsd_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:272]: (style) Redundant condition: fullatom_original. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:294]: (performance) Function parameter 'allowed_loop_abegos' should be passed by const reference. [passedByValue]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:294]: (performance) Function parameter 'closure_type' should be passed by const reference. [passedByValue]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:416]: (style) Parameter 'poseOP' can be declared with const [constParameter]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:530]: (style) Variable 'frag_rot_cmap' is assigned a value that is never used. [unreadVariable]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:570]: (style) Variable 'frag_rot_cmap' is assigned a value that is never used. [unreadVariable]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:637]: (performance) Function parameter 'pose' should be passed by const reference. [passedByValue]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:769]: (warning) Member variable 'NearNativeLoopCloser::chainAfterLoop_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:769]: (warning) Member variable 'NearNativeLoopCloser::chainBeforeLoop_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:769]: (warning) Member variable 'NearNativeLoopCloser::idealExtension_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:769]: (warning) Member variable 'NearNativeLoopCloser::ideal_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:769]: (warning) Member variable 'NearNativeLoopCloser::output_all_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:769]: (warning) Member variable 'NearNativeLoopCloser::output_closed_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:769]: (warning) Member variable 'NearNativeLoopCloser::resAdjustmentStartHigh_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:769]: (warning) Member variable 'NearNativeLoopCloser::resAdjustmentStartHigh_sheet_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:769]: (warning) Member variable 'NearNativeLoopCloser::resAdjustmentStartLow_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:769]: (warning) Member variable 'NearNativeLoopCloser::resAdjustmentStartLow_sheet_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:769]: (warning) Member variable 'NearNativeLoopCloser::resAdjustmentStopHigh_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:769]: (warning) Member variable 'NearNativeLoopCloser::resAdjustmentStopHigh_sheet_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:769]: (warning) Member variable 'NearNativeLoopCloser::resAdjustmentStopLow_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:769]: (warning) Member variable 'NearNativeLoopCloser::resAdjustmentStopLow_sheet_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:769]: (warning) Member variable 'NearNativeLoopCloser::SSHashedFragmentStore_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:769]: (warning) Member variable 'NearNativeLoopCloser::top_outputed_' is not initialized in the constructor. [uninitMemberVar]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:777]: (performance) Function parameter 'allowed_loop_abegos' should be passed by const reference. [passedByValue]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:777]: (performance) Function parameter 'closure_type' should be passed by const reference. [passedByValue]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:786]: (performance) Variable 'loopLengthRangeLow_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:787]: (performance) Variable 'loopLengthRangeHigh_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:788]: (performance) Variable 'resBeforeLoop_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:789]: (performance) Variable 'resAfterLoop_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:792]: (performance) Variable 'rmsThreshold_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:798]: (performance) Variable 'max_vdw_change_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:799]: (performance) Variable 'closure_type_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_length_moves/NearNativeLoopCloser.cc:800]: (performance) Variable 'allowed_loop_abegos_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/pose_length_moves/NearNativeLoopCloser.hh:73]: (performance) Function parameter 'pose' should be passed by const reference. [passedByValue]
[protocols/pose_metric_calculators/ExplicitWaterUnsatisfiedPolarsCalculator.cc:163]: (performance) Function parameter 'wat_rsd' should be passed by const reference. [passedByValue]
[protocols/pose_metric_calculators/ExplicitWaterUnsatisfiedPolarsCalculator.cc:177] -> [protocols/pose_metric_calculators/ExplicitWaterUnsatisfiedPolarsCalculator.cc:186]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/pose_metric_calculators/ExplicitWaterUnsatisfiedPolarsCalculator.cc:254] -> [protocols/pose_metric_calculators/ExplicitWaterUnsatisfiedPolarsCalculator.cc:268]: (style) Local variable 'rsd_set' shadows outer variable [shadowVariable]
[protocols/pose_metric_calculators/RotamerRecovery.cc:173]: (style) Parameter 'native' can be declared with const [constParameter]
[protocols/pose_metric_calculators/SemiExplicitWaterUnsatisfiedPolarsCalculator.cc:593]: (performance) Function parameter 'atom_type' should be passed by const reference. [passedByValue]
[protocols/protein_interface_design/design_utils.cc:188]: (style) Parameter 'pose_wt' can be declared with const [constParameter]
[protocols/protein_interface_design/design_utils.hh:48]: (performance) Variable 'scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/protein_interface_design/design_utils.hh:86]: (performance) Variable 'scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/protein_interface_design/design_utils.hh:91]: (performance) Variable 'scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/protein_interface_design/filters/AtomicContactCountFilter.cc:369]: (style) The scope of the variable 'j_is_not_in' can be reduced. [variableScope]
[protocols/protein_interface_design/filters/AtomicContactCountFilter.cc:383]: (style) Redundant condition: count_SD_NE1_. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[protocols/protein_interface_design/filters/AtomicContactCountFilter.cc:390]: (style) Redundant condition: count_SD_NE1_. '!A || (A && B)' is equivalent to '!A || B' [redundantCondition]
[protocols/protein_interface_design/filters/AtomicContactCountFilter.cc:97]: (performance) Function parameter 'sym_dof_name' should be passed by const reference. [passedByValue]
[protocols/protein_interface_design/filters/HbondsToAtomFilter.hh:49]: (warning) Member variable 'HbondsToAtomFilter::backbone_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/filters/HbondsToAtomFilter.hh:49]: (warning) Member variable 'HbondsToAtomFilter::bb_bb_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/filters/HbondsToAtomFilter.hh:49]: (warning) Member variable 'HbondsToAtomFilter::sidechain_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/filters/HbondsToAtomFilter.hh:50]: (warning) Member variable 'HbondsToAtomFilter::bb_bb_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/filters/InterfaceHolesFilter.hh:35]: (performance) Variable 'rb_jump_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/protein_interface_design/filters/InterfaceHolesFilter.hh:36]: (performance) Variable 'threshold_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/protein_interface_design/filters/InterfaceHolesFilter.hh:49]: (performance) Variable 'rb_jump_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/protein_interface_design/filters/InterfaceHolesFilter.hh:50]: (performance) Variable 'threshold_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/protein_interface_design/filters/RmsdSimpleFilter.cc:281]: (style) Variable 'tmpDistSqr' is assigned a value that is never used. [unreadVariable]
[protocols/protein_interface_design/filters/RmsdSimpleFilter.cc:68]: (warning) Member variable 'RmsdSimpleFilter::b_target_chain_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/filters/RmsdSimpleFilter.cc:76]: (warning) Member variable 'RmsdSimpleFilter::b_target_chain_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/filters/RmsdSimpleFilter.cc:81]: (performance) Variable 'threshold_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/protein_interface_design/filters/RmsdSimpleFilter.cc:82]: (performance) Variable 'reference_pose_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/protein_interface_design/filters/SequenceRecoveryFilter.cc:44]: (warning) Member variable 'SequenceRecoveryFilter::write2pdb_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/movers/DesignMinimizeHbonds.cc:58]: (warning) Member variable 'DesignMinimizeHbonds::acceptors_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/movers/DesignMinimizeHbonds.cc:58]: (warning) Member variable 'DesignMinimizeHbonds::bb_hbond_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/movers/DesignMinimizeHbonds.cc:58]: (warning) Member variable 'DesignMinimizeHbonds::donors_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/movers/DesignMinimizeHbonds.cc:58]: (warning) Member variable 'DesignMinimizeHbonds::sc_hbond_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/movers/DockAndRetrieveSidechains.cc:56]: (warning) Member variable 'DockAndRetrieveSidechains::conserve_foldtree_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/movers/DockAndRetrieveSidechains.cc:56]: (warning) Member variable 'DockAndRetrieveSidechains::low_res_protocol_only_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/movers/DockAndRetrieveSidechains.cc:56]: (warning) Member variable 'DockAndRetrieveSidechains::symmetry_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/movers/InterfaceRecapitulationMover.cc:121] -> [protocols/protein_interface_design/movers/InterfaceRecapitulationMover.cc:127]: (style) Local variable 'rsd' shadows outer variable [shadowVariable]
[protocols/protein_interface_design/movers/LoopFinder.cc:69]: (warning) Member variable 'LoopFinder::ch1_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/movers/LoopFinder.cc:69]: (warning) Member variable 'LoopFinder::ch2_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/movers/LoopMoverFromCommandLine.cc:91]: (warning) Member variable 'LoopMoverFromCommandLine::perturb_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/movers/LoopMoverFromCommandLine.cc:91]: (warning) Member variable 'LoopMoverFromCommandLine::refine_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/movers/LoopOver.cc:42]: (warning) Member variable 'LoopOver::drift_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/movers/LoopRemodel.cc:110]: (warning) Member variable 'LoopRemodel::hurry_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/movers/LoopRemodel.cc:110]: (warning) Member variable 'LoopRemodel::perturb_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/movers/LoopRemodel.cc:110]: (warning) Member variable 'LoopRemodel::refine_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/movers/LoopRemodel.cc:199] -> [protocols/protein_interface_design/movers/LoopRemodel.cc:251]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/protein_interface_design/movers/LoopRemodel.cc:385] -> [protocols/protein_interface_design/movers/LoopRemodel.cc:408]: (style) Local variable 'it' shadows outer variable [shadowVariable]
[protocols/protein_interface_design/movers/MapHotspot.cc:77]: (warning) Member variable 'MapHotspot::clash_check_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/movers/PatchdockTransform.cc:46]: (performance) Variable 'pd_reader_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/protein_interface_design/movers/PlaceOnLoop.cc:190]: (style) Variable 'saved_bb_constraints' is assigned a value that is never used. [unreadVariable]
[protocols/protein_interface_design/movers/PlaceSimultaneouslyMover.cc:150] -> [protocols/protein_interface_design/movers/PlaceSimultaneouslyMover.cc:186]: (style) Local variable 'stub_scorefxn' shadows outer variable [shadowVariable]
[protocols/protein_interface_design/movers/PlaceSimultaneouslyMover.cc:901]: (performance) Variable 'residue_level_tasks_for_placed_hotspots_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/protein_interface_design/movers/PlaceSimultaneouslyMover.cc:905]: (performance) Variable 'auction_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/protein_interface_design/movers/PlaceSimultaneouslyMover.cc:906]: (performance) Variable 'rbstub_minimization_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/protein_interface_design/movers/PlaceSimultaneouslyMover.cc:907]: (performance) Variable 'stub_score_filter_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/protein_interface_design/movers/PlaceStubMover.cc:394] -> [protocols/protein_interface_design/movers/PlaceStubMover.cc:396]: (warning) Opposite inner 'if' condition leads to a dead code block. [oppositeInnerCondition]
[protocols/protein_interface_design/movers/PlaceStubMover.cc:413] -> [protocols/protein_interface_design/movers/PlaceStubMover.cc:472]: (style) Local variable 'curr_bonus' shadows outer variable [shadowVariable]
[protocols/protein_interface_design/movers/PlaceStubMover.cc:833] -> [protocols/protein_interface_design/movers/PlaceStubMover.cc:859]: (style) Local variable 'it' shadows outer variable [shadowVariable]
[protocols/protein_interface_design/movers/RandomMutation.cc:55]: (warning) Member variable 'RandomMutation::cache_task_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/movers/SaveAndRetrieveSidechains.cc:63]: (performance) Variable 'jumpid_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/protein_interface_design/movers/SaveAndRetrieveSidechains.cc:67]: (performance) Variable 'first_apply_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/protein_interface_design/movers/SaveAndRetrieveSidechains.cc:69]: (performance) Variable 'init_pose_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/protein_interface_design/movers/SetAtomTree.cc:65] -> [protocols/protein_interface_design/movers/SetAtomTree.cc:157]: (style) Local variable 'anchor_num' shadows outer variable [shadowVariable]
[protocols/protein_interface_design/movers/SetAtomTree.cc:65] -> [protocols/protein_interface_design/movers/SetAtomTree.cc:444]: (style) Local variable 'anchor_num' shadows outer variable [shadowVariable]
[protocols/protein_interface_design/movers/SetAtomTree.cc:66] -> [protocols/protein_interface_design/movers/SetAtomTree.cc:159]: (style) Local variable 'connect_from' shadows outer variable [shadowVariable]
[protocols/protein_interface_design/movers/SetAtomTree.cc:66] -> [protocols/protein_interface_design/movers/SetAtomTree.cc:445]: (style) Local variable 'connect_from' shadows outer variable [shadowVariable]
[protocols/protein_interface_design/movers/SetAtomTree.cc:67] -> [protocols/protein_interface_design/movers/SetAtomTree.cc:158]: (style) Local variable 'connect_to' shadows outer variable [shadowVariable]
[protocols/protein_interface_design/movers/SetAtomTree.cc:67] -> [protocols/protein_interface_design/movers/SetAtomTree.cc:438]: (style) Local variable 'connect_to' shadows outer variable [shadowVariable]
[protocols/protein_interface_design/movers/SetupHotspotConstraintsLoopsMover.cc:195]: (performance) Variable 'hotspot_stub_set_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/protein_interface_design/movers/SetupHotspotConstraintsLoopsMover.cc:212]: (performance) Variable 'hotspot_stub_set_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/protein_interface_design/movers/SetupHotspotConstraintsMover.cc:106]: (performance) Variable 'hotspot_stub_set_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/protein_interface_design/movers/ShoveResidueMover.cc:67]: (warning) Member variable 'ShoveResidueMover::remove_shove_variant_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/movers/TopologyBrokerMover.cc:71]: (warning) Member variable 'TopologyBrokerMover::align_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/movers/TryRotamers.cc:66]: (warning) Member variable 'TryRotamers::automatic_connection_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/movers/TryRotamers.cc:66]: (warning) Member variable 'TryRotamers::clash_check_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/movers/TryRotamers.cc:66]: (warning) Member variable 'TryRotamers::include_current_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/movers/TryRotamers.cc:66]: (warning) Member variable 'TryRotamers::solo_res_' is not initialized in the constructor. [uninitMemberVar]
[protocols/protein_interface_design/movers/VLB.cc:76]: (performance) Variable 'scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/qsar/qsarMap.cc:65]: (performance) Function parameter 'map_name' should be passed by const reference. [passedByValue]
[protocols/qsar/RenderGridsToKinemage.cc:57]: (performance) Variable 'color_value' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/qsar/RenderGridsToKinemage.cc:58]: (performance) Variable 'lower_bound' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/qsar/RenderGridsToKinemage.cc:59]: (performance) Variable 'upper_bound' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/qsar/RenderGridsToKinemage.cc:60]: (performance) Variable 'color_name' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/qsar/scoring_grid/ChargeGrid.hh:32]: (performance) Variable 'charge' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/qsar/scoring_grid/ChargeGrid.hh:33]: (performance) Variable 'neighbor_count' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/qsar/scoring_grid/ChargeGrid.hh:38]: (performance) Variable 'charge' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/qsar/scoring_grid/ChargeGrid.hh:39]: (performance) Variable 'neighbor_count' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/qsar/scoring_grid/GridSet.cc:62]: (performance) Function parameter 'norm_function_name' should be passed by const reference. [passedByValue]
[protocols/qsar/scoring_grid/schema_util.cc:42]: (style) Parameter 'attributes' can be declared with const [constParameter]
[protocols/qsar/scoring_grid/schema_util.cc:69]: (style) Parameter 'attributes' can be declared with const [constParameter]
[protocols/qsar/scoring_grid/ShapeGrid.cc:84]: (performance) Variable 'distance_bin_width_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/qsar/scoring_grid/ShapeGrid.cc:85]: (performance) Variable 'theta_bin_width_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/qsar/scoring_grid/ShapeGrid.cc:86]: (performance) Variable 'phi_bin_width_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/qsar/scoring_grid/SingleGrid.cc:104]: (performance) Function parameter 'type' should be passed by const reference. [passedByValue]
[protocols/qsar/scoring_grid/SiteGrid.cc:74]: (performance) Variable 'atr_weight_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/qsar/scoring_grid/SiteGrid.cc:75]: (performance) Variable 'rep_weight_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/qsar/scoring_grid/SiteGrid.cc:76]: (performance) Variable 'atr_radius_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/qsar/scoring_grid/SiteGrid.cc:77]: (performance) Variable 'rep_radius_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rbsegment_relax/AutoRBRelaxMover.cc:109]: (performance) Variable 'scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rbsegment_relax/IdealizeHelices.cc:166] -> [protocols/rbsegment_relax/IdealizeHelices.cc:258]: (style) Local variable 'ww' shadows outer variable [shadowVariable]
[protocols/rbsegment_relax/IdealizeHelices.cc:167] -> [protocols/rbsegment_relax/IdealizeHelices.cc:259]: (style) Local variable 'uu' shadows outer variable [shadowVariable]
[protocols/rbsegment_relax/IdealizeHelices.cc:168] -> [protocols/rbsegment_relax/IdealizeHelices.cc:260]: (style) Local variable 'com1' shadows outer variable [shadowVariable]
[protocols/rbsegment_relax/IdealizeHelices.cc:168] -> [protocols/rbsegment_relax/IdealizeHelices.cc:260]: (style) Local variable 'com2' shadows outer variable [shadowVariable]
[protocols/rbsegment_relax/IdealizeHelices.cc:171] -> [protocols/rbsegment_relax/IdealizeHelices.cc:263]: (style) Local variable 'init_coords' shadows outer variable [shadowVariable]
[protocols/rbsegment_relax/IdealizeHelices.cc:188] -> [protocols/rbsegment_relax/IdealizeHelices.cc:279]: (style) Local variable 'final_coords' shadows outer variable [shadowVariable]
[protocols/rbsegment_relax/IdealizeHelices.cc:211] -> [protocols/rbsegment_relax/IdealizeHelices.cc:293]: (style) Local variable 'ctx' shadows outer variable [shadowVariable]
[protocols/rbsegment_relax/IdealizeHelices.cc:211] -> [protocols/rbsegment_relax/IdealizeHelices.cc:293]: (style) Local variable 'rms' shadows outer variable [shadowVariable]
[protocols/rbsegment_relax/IdealizeHelices.cc:214] -> [protocols/rbsegment_relax/IdealizeHelices.cc:296]: (style) Local variable 'R' shadows outer variable [shadowVariable]
[protocols/rbsegment_relax/IdealizeHelices.hh:38]: (performance) Variable 'scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rbsegment_relax/IdealizeHelices.hh:39]: (performance) Variable 'scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rbsegment_relax/OptimizeThreading.hh:38]: (performance) Variable 'scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rbsegment_relax/RBSegment.hh:71]: (performance) Variable 'sigOffAxisT_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rbsegment_relax/RBSegmentRelax.cc:101]: (performance) Variable 'helical_sigR' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rbsegment_relax/RBSegmentRelax.cc:101]: (performance) Variable 'helical_sigT' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rbsegment_relax/RBSegmentRelax.cc:102]: (performance) Variable 'helical_sigOffAxisR' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rbsegment_relax/RBSegmentRelax.cc:102]: (performance) Variable 'helical_sigOffAxisT' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rbsegment_relax/RBSegmentRelax.cc:104]: (performance) Variable 'strand_sigR' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rbsegment_relax/RBSegmentRelax.cc:104]: (performance) Variable 'strand_sigT' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rbsegment_relax/RBSegmentRelax.cc:105]: (performance) Variable 'strand_sigOffAxisR' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rbsegment_relax/RBSegmentRelax.cc:105]: (performance) Variable 'strand_sigOffAxisT' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rbsegment_relax/RBSegmentRelax.cc:107]: (performance) Variable 'genericRB_sigR' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rbsegment_relax/RBSegmentRelax.cc:107]: (performance) Variable 'genericRB_sigT' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rbsegment_relax/RBSegmentRelax.cc:109]: (performance) Variable 'cst_weight_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rbsegment_relax/RBSegmentRelax.cc:110]: (performance) Variable 'cst_width_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rbsegment_relax/RBSegmentRelax.cc:111]: (performance) Variable 'cst_stdev_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rbsegment_relax/RBSegmentRelax.cc:112]: (performance) Variable 'cst_seqwidth_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rbsegment_relax/RBSegmentRelax.cc:114]: (performance) Variable 'rand_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rbsegment_relax/RBSegmentRelax.cc:79]: (warning) Member variable 'RBSegmentRelax::fix_ligands_' is not initialized in the constructor. [uninitMemberVar]
[protocols/rbsegment_relax/RBSegmentRelax.cc:92]: (performance) Variable 'init_temp' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rbsegment_relax/RBSegmentRelax.cc:93]: (performance) Variable 'final_temp' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rbsegment_relax/RBSegmentRelax.cc:99]: (performance) Variable 'cycles_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rbsegment_relax/RBSegmentRelax_main.cc:72]: (performance) Variable 'scorefxn_rb_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rbsegment_relax/util.cc:319]: (style) Variable 'jumps' is assigned a value that is never used. [unreadVariable]
[protocols/recces/sampler/rna/MC_RNA_KIC_Sampler.cc:154] -> [protocols/recces/sampler/rna/MC_RNA_KIC_Sampler.cc:155]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/recces/scratch/ThermalMinimizer.cc:418]: (style) The scope of the variable 'did_move' can be reduced. [variableScope]
[protocols/recces/scratch/ThermalSamplingMover.cc:193] -> [protocols/recces/scratch/ThermalSamplingMover.cc:262]: (style) Local variable 'sample_near_a_form' shadows outer variable [shadowVariable]
[protocols/recces/scratch/ThermalSamplingMover.cc:350] -> [protocols/recces/scratch/ThermalSamplingMover.cc:550]: (style) Local variable 'scores' shadows outer variable [shadowVariable]
[protocols/recces/scratch/ThermalSamplingMover.cc:369]: (style) The scope of the variable 'did_move' can be reduced. [variableScope]
[protocols/recces/setup_util.cc:120]: (style) Variable 'rsd_set' is assigned a value that is never used. [unreadVariable]
[protocols/recon_design/FindConsensusSequence.cc:109] -> [protocols/recon_design/FindConsensusSequence.cc:112]: (style) Variable 'debug_' is reassigned a value before the old one has been used. [redundantAssignment]
[protocols/recon_design/FindConsensusSequence.cc:439]: (style) Parameter 'resfiles' can be declared with const [constParameter]
[protocols/recon_design/MSDMover.cc:156] -> [protocols/recon_design/MSDMover.cc:159]: (style) Variable 'debug_' is reassigned a value before the old one has been used. [redundantAssignment]
[protocols/recon_design/recon_util.cc:53]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/relax/ClassicRelax.cc:223] -> [protocols/relax/ClassicRelax.cc:229]: (style) Variable 'stage3_cycles' is reassigned a value before the old one has been used. [redundantAssignment]
[protocols/relax/ClassicRelax.cc:371]: (style) Parameter 'movemap' can be declared with const [constParameter]
[protocols/relax/ClassicRelax.cc:371]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/relax/ClassicRelax.cc:426]: (style) Parameter 'movemap' can be declared with const [constParameter]
[protocols/relax/ClassicRelax.cc:426]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/relax/cst_util.cc:105]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/relax/cst_util.cc:51]: (performance) Function parameter 'aln' should be passed by const reference. [passedByValue]
[protocols/relax/cst_util.cc:82]: (style) Variable 'cst_set' is assigned a value that is never used. [unreadVariable]
[protocols/relax/FastRelax.cc:1083]: (style) Unused variable: line [unusedVariable]
[protocols/relax/FastRelax.hh:53]: (performance) Variable 'command' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/relax/FastRelax.hh:54]: (performance) Variable 'param1' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/relax/FastRelax.hh:55]: (performance) Variable 'param2' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/relax/FastRelax.hh:56]: (performance) Variable 'param3' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/relax/FastRelax.hh:57]: (performance) Variable 'param4' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/relax/FastRelax.hh:58]: (performance) Variable 'nparams' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/relax/LocalRelax.cc:140]: (performance) Variable 'NCYC_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/relax/LocalRelax.cc:141]: (performance) Variable 'NEXP_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/relax/LocalRelax.cc:142]: (performance) Variable 'K_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/relax/LocalRelax.cc:143]: (performance) Variable 'max_iter_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/relax/LocalRelax.cc:208]: (style) The scope of the variable 'dump_idx' can be reduced. [variableScope]
[protocols/relax/membrane/util.cc:109]: (error) When i==wt_id_mut.size(), wt_id_mut[i] is out of bounds. [stlOutOfBounds]
[protocols/relax/membrane/util.cc:131]: (error) When i==wt_id_mut.size(), wt_id_mut[i] is out of bounds. [stlOutOfBounds]
[protocols/relax/membrane/util.cc:161]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/relax/Ramady.cc:52]: (style) Parameter 'exclude_regions' can be declared with const [constParameter]
[protocols/relax/RangeRelaxMover.cc:369]: (performance) Function parameter 'nmoves' should be passed by const reference. [passedByValue]
[protocols/relax/RangeRelaxMover.cc:677]: (style) Parameter 'ref_pose' can be declared with const [constParameter]
[protocols/relax/RelaxProtocolBase.cc:353]: (performance) Function parameter 'min_type' should be passed by const reference. [passedByValue]
[protocols/relax/RelaxProtocolBase.cc:539]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[protocols/relax/RepeatProteinRelax.cc:69]: (warning) Member variable 'RepeatProteinRelax::cartesian_' is not initialized in the constructor. [uninitMemberVar]
[protocols/relax/RepeatProteinRelax.cc:69]: (warning) Member variable 'RepeatProteinRelax::loop_cutpoint_mode_' is not initialized in the constructor. [uninitMemberVar]
[protocols/relax/RepeatProteinRelax.cc:69]: (warning) Member variable 'RepeatProteinRelax::minimize_' is not initialized in the constructor. [uninitMemberVar]
[protocols/relax/RepeatProteinRelax.cc:69]: (warning) Member variable 'RepeatProteinRelax::modify_symmetry_and_exit_' is not initialized in the constructor. [uninitMemberVar]
[protocols/relax/RepeatProteinRelax.cc:69]: (warning) Member variable 'RepeatProteinRelax::ramp_down_constraints_' is not initialized in the constructor. [uninitMemberVar]
[protocols/relax/RepeatProteinRelax.cc:69]: (warning) Member variable 'RepeatProteinRelax::remove_symm_' is not initialized in the constructor. [uninitMemberVar]
[protocols/relax/RepeatProteinRelax.cc:82]: (style) Variable 'endLoop' is assigned a value that is never used. [unreadVariable]
[protocols/relax/util.cc:132]: (style) Parameter 'opts' can be declared with const [constParameter]
[protocols/relax/util.cc:160]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/residue_optimization/MetapatchEnumeration.cc:248]: (style) Variable 'starting_name' is assigned a value that is never used. [unreadVariable]
[protocols/residue_optimization/MetapatchEnumeration.hh:32]: (performance) Function parameter 'pose' should be passed by const reference. [passedByValue]
[protocols/residue_selectors/HBondSelector.cc:269]: (performance) Function parameter 'input' should be passed by const reference. [passedByValue]
[protocols/residue_selectors/HBondSelector.cc:68]: (performance) Variable 'scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/residue_selectors/NativeSelector.cc:65]: (performance) Variable 'selector_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/residue_selectors/StoreResidueSubsetMover.hh:67]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[protocols/rigid/PoseMembraneRigidBodyMover.cc:296]: (performance) Variable 'axis_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rigid/PoseMembraneRigidBodyMover.cc:297]: (performance) Variable 'center_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rigid/PoseMembraneRigidBodyMover.cc:298]: (performance) Variable 'alpha_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rigid/RigidBodyMover.cc:160]: (warning) Member variable 'RigidBodyPerturbMover::interface_' is not initialized in the constructor. [uninitMemberVar]
[protocols/rigid/RigidBodyMover.cc:160]: (warning) Member variable 'RigidBodyPerturbMover::partner_' is not initialized in the constructor. [uninitMemberVar]
[protocols/rigid/RigidBodyMover.cc:594]: (warning) Member variable 'RigidBodySpinMover::update_spin_axis_' is not initialized in the constructor. [uninitMemberVar]
[protocols/rigid/RigidBodyMover.hh:823]: (performance) Function parameter 'dofs' should be passed by const reference. [passedByValue]
[protocols/rna/denovo/movers/RNP_HighResMover.cc:102]: (performance) Variable 'protein_sc_pack_cutoff_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rna/denovo/RNA_DeNovoPoseInitializer.cc:307]: (style) Variable 'pose_copy' is assigned a value that is never used. [unreadVariable]
[protocols/rna/denovo/RNA_DeNovoPoseInitializer.cc:345]: (style) The scope of the variable 'success' can be reduced. [variableScope]
[protocols/rna/denovo/RNA_DeNovoPoseInitializer.cc:627] -> [protocols/rna/denovo/RNA_DeNovoPoseInitializer.cc:1066]: (style) Local variable 'all_res_lists' shadows outer variable [shadowVariable]
[protocols/rna/denovo/RNA_DeNovoPoseInitializer.cc:884] -> [protocols/rna/denovo/RNA_DeNovoPoseInitializer.cc:941]: (style) Local variable 'it' shadows outer variable [shadowVariable]
[protocols/rna/denovo/RNA_DeNovoProtocol.cc:502]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/rna/denovo/RNA_DeNovoProtocol.cc:552]: (style) Parameter 'silent_file_data' can be declared with const [constParameter]
[protocols/rna/denovo/util.cc:264]: (style) Parameter 'scorefxn' can be declared with const [constParameter]
[protocols/rna/denovo/util.cc:575]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/rna/movers/ErraserMinimizerMover.cc:1177]: (style) Variable 'ii' is assigned a value that is never used. [unreadVariable]
[protocols/rna/movers/ErraserMinimizerMover.cc:853]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/rna/movers/ErraserMinimizerMover.cc:854]: (style) Parameter 'allow_insert' can be declared with const [constParameter]
[protocols/rna/movers/ErraserMinimizerMover.cc:962]: (style) Variable 'pose_full' is assigned a value that is never used. [unreadVariable]
[protocols/rna/movers/RNA_LoopCloser.cc:300] -> [protocols/rna/movers/RNA_LoopCloser.cc:305]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/rna/movers/RNA_LoopCloser.cc:484]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/rna/movers/RNAThreadAndMinimizeMover.cc:141]: (style) Variable 'template_pose' is assigned a value that is never used. [unreadVariable]
[protocols/rna/movers/RNAThreadAndMinimizeMover.cc:160]: (style) Unused variable: template_alignment2sequence [unusedVariable]
[protocols/rna/movers/RNAThreadAndMinimizeMover.cc:303] -> [protocols/rna/movers/RNAThreadAndMinimizeMover.cc:369]: (style) Local variable 'ii' shadows outer variable [shadowVariable]
[protocols/rna/movers/RNAThreadAndMinimizeMover.cc:303] -> [protocols/rna/movers/RNAThreadAndMinimizeMover.cc:381]: (style) Local variable 'ii' shadows outer variable [shadowVariable]
[protocols/rna/movers/RNAThreadAndMinimizeMover.cc:668]: (style) Variable 'clean_target_sequence' is assigned a value that is never used. [unreadVariable]
[protocols/rosetta_scripts/MultiplePoseMover.cc:241]: (style) Parameter 'poses' can be declared with const [constParameter]
[protocols/rosetta_scripts/ParsedProtocol.cc:123] -> [protocols/rosetta_scripts/ParsedProtocol.cc:127]: (style) Condition 'checkpoint' is always true [knownConditionTrueFalse]
[protocols/rosetta_scripts/ParsedProtocol.cc:197]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/rosetta_scripts/util.cc:220]: (style) Parameter 'data' can be declared with const [constParameter]
[protocols/rosetta_scripts/util.cc:505]: (style) Parameter 'attlist' can be declared with const [constParameter]
[protocols/rosetta_scripts/XmlObjects.cc:134]: (style) The scope of the variable 'modified_pose' can be reduced. [variableScope]
[protocols/rosetta_scripts/XmlObjects.cc:146]: (style) Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
[protocols/rosetta_scripts/XmlObjects.cc:189]: (style) The scope of the variable 'modified_pose' can be reduced. [variableScope]
[protocols/rosetta_scripts/XmlObjects.cc:200]: (style) Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
[protocols/rosetta_scripts/XmlObjects.cc:314]: (style) Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
[protocols/rosetta_scripts/XmlObjects.cc:368]: (style) Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
[protocols/rosetta_scripts/XmlObjects.cc:404]: (style) Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
[protocols/rosetta_scripts/XmlObjects.cc:458]: (style) Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
[protocols/rosetta_scripts/XmlObjects.cc:512]: (style) Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
[protocols/rosetta_scripts/XmlObjects.cc:566]: (style) Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
[protocols/rotamer_recovery/RRComparer.cc:236]: (style) Parameter 'attlist' can be declared with const [constParameter]
[protocols/rotamer_recovery/RRProtocolReferenceStructure.cc:173]: (style) Parameter 'attlist' can be declared with const [constParameter]
[protocols/rpc/rpc.cc:106]: (performance) Variable 'msg_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rpc/rpc.cc:114]: (warning) Member variable 'JSON_RPC::basic_init_' is not assigned a value in 'JSON_RPC::operator='. [operatorEqVarError]
[protocols/rpc/rpc.hh:87]: (style) 'JSON_RPC::operator=' should return 'JSON_RPC &'. [operatorEq]
[protocols/scoring/ImplicitFastClashCheck.cc:116]: (warning) Assert statement calls a function which may have desired side effects: 'x'. [assertWithSideEffect]
[protocols/scoring/ImplicitFastClashCheck.cc:117]: (warning) Assert statement calls a function which may have desired side effects: 'y'. [assertWithSideEffect]
[protocols/scoring/ImplicitFastClashCheck.cc:118]: (warning) Assert statement calls a function which may have desired side effects: 'z'. [assertWithSideEffect]
[protocols/scoring/ImplicitFastClashCheck.cc:266]: (style) Variable 'bclash' is assigned a value that is never used. [unreadVariable]
[protocols/scoring/InterchainPotential.cc:131]: (style) Variable 'interface' can be declared with const [constVariable]
[protocols/scoring/Interface.hh:56]: (performance) Variable 'jump_number_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/Interface.hh:57]: (performance) Variable 'distance_squared_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/Interface.hh:68]: (performance) Variable 'distance_squared_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/Interface.hh:76]: (performance) Variable 'partner_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/Interface.hh:79]: (performance) Variable 'distance_squared_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/InterfaceInfo.cc:49]: (performance) Variable 'rb_jump_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/InterfaceInfo.cc:50]: (performance) Variable 'num_jump_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/InterfaceInfo.cc:51]: (performance) Variable 'distance_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/InterfaceInfo.cc:53]: (performance) Variable 'interface_list_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/InterfaceInfo.hh:68]: (performance) Variable 'rb_jump_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/InterfaceInfo.hh:69]: (performance) Variable 'distance_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/GridSearchIteratorCA.cc:69]: (performance) Variable 'x_vec_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/GridSearchIteratorCA.cc:70]: (performance) Variable 'y_vec_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/GridSearchIteratorCA.cc:71]: (performance) Variable 'z_vec_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/GridSearchIteratorCA.cc:72]: (performance) Variable 'res_num_cur_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/GridSearchIteratorCA.cc:73]: (performance) Variable 'res_num_total_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsDataCenter.cc:282]: (style) Parameter 'pcs_i_l' can be declared with const [constParameter]
[protocols/scoring/methods/pcs2/PcsDataCenter.cc:91]: (performance) Variable 'n_lanthanides_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsDataCenter.cc:92]: (performance) Variable 'n_pcs_spin_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsDataCenter.cc:93]: (performance) Variable 'PCS_data_line_all_spin_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsDataCenter.cc:94]: (performance) Variable 'PCS_data_per_lanthanides_all_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsDataCenter.cc:95]: (performance) Variable 'A_all_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsDataCenter.cc:96]: (performance) Variable 'X_all_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsDataCenter.cc:97]: (performance) Variable 'Y_all_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsDataCenter.cc:98]: (performance) Variable 'Z_all_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsDataLanthanide.cc:139]: (style) Parameter 'A_all' can be declared with const [constParameter]
[protocols/scoring/methods/pcs2/PcsDataLanthanide.cc:151]: (style) Parameter 'A_all' can be declared with const [constParameter]
[protocols/scoring/methods/pcs2/PcsDataLanthanide.cc:274]: (style) Parameter 'pcs_i_l' can be declared with const [constParameter]
[protocols/scoring/methods/pcs2/PcsDataLanthanide.cc:321]: (performance) Variable 'individual_scale_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsDataLanthanide.cc:323]: (performance) Variable 'n_pcs_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsDataLanthanide.cc:73]: (performance) Variable 'n_pcs_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsDataLanthanide.cc:74]: (performance) Variable 'A_index_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsDataLanthanide.cc:76]: (performance) Variable 'cstyle_A_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsDataLanthanide.cc:78]: (performance) Variable 'cstyle_b_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsDataLanthanide.cc:79]: (performance) Variable 'cstyle_b_individual_scale_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsDataLanthanide.cc:80]: (performance) Variable 'individual_scale_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsDataLanthanide.cc:81]: (performance) Variable 'normalization_1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsDataLanthanide.cc:82]: (performance) Variable 'normalization_2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsDataLanthanide.cc:83]: (performance) Variable 'normalization_3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsDataLanthanide.cc:84]: (performance) Variable 'normalization_factor_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsDataLanthanide.cc:85]: (performance) Variable 'normalization_factor_inversed_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsEnergy.cc:249]: (style) Variable 'pcs_d_c_m_s' can be declared with const [constVariable]
[protocols/scoring/methods/pcs2/PcsEnergy.cc:593] -> [protocols/scoring/methods/pcs2/PcsEnergy.cc:603]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/scoring/methods/pcs2/PcsEnergy.cc:755] -> [protocols/scoring/methods/pcs2/PcsEnergy.cc:765]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/scoring/methods/pcs2/PcsEnergyParameter.cc:77]: (performance) Variable 'include_only_start_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsEnergyParameter.cc:78]: (performance) Variable 'include_only_end_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsEnergyParameter.cc:79]: (performance) Variable 'n_trial_min_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsEnergyParameter.cc:80]: (performance) Variable 'pcs_weight_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsEnergyParameter.cc:81]: (performance) Variable 'individual_scale_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsEnergyParameter.cc:82]: (performance) Variable 'vec_filename_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsEnergyParameter.cc:83]: (performance) Variable 'vec_individual_weight_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:100]: (performance) Variable 'include_only_start_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:101]: (performance) Variable 'include_only_start_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:102]: (performance) Variable 'include_only_start_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:103]: (performance) Variable 'include_only_start_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:105]: (performance) Variable 'include_only_end_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:106]: (performance) Variable 'include_only_end_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:107]: (performance) Variable 'include_only_end_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:108]: (performance) Variable 'include_only_end_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:110]: (performance) Variable 'n_trial_min_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:111]: (performance) Variable 'n_trial_min_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:112]: (performance) Variable 'n_trial_min_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:113]: (performance) Variable 'n_trial_min_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:115]: (performance) Variable 'pcs_weight_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:116]: (performance) Variable 'pcs_weight_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:117]: (performance) Variable 'pcs_weight_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:118]: (performance) Variable 'pcs_weight_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:120]: (performance) Variable 'individual_scale_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:121]: (performance) Variable 'individual_scale_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:122]: (performance) Variable 'individual_scale_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:123]: (performance) Variable 'individual_scale_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:126]: (performance) Variable 'filenames_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:127]: (performance) Variable 'individual_weights_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:133]: (performance) Variable 'include_only_start_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:134]: (performance) Variable 'include_only_start_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:135]: (performance) Variable 'include_only_start_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:136]: (performance) Variable 'include_only_start_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:138]: (performance) Variable 'include_only_end_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:139]: (performance) Variable 'include_only_end_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:140]: (performance) Variable 'include_only_end_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:141]: (performance) Variable 'include_only_end_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:143]: (performance) Variable 'n_trial_min_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:144]: (performance) Variable 'n_trial_min_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:145]: (performance) Variable 'n_trial_min_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:146]: (performance) Variable 'n_trial_min_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:148]: (performance) Variable 'pcs_weight_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:149]: (performance) Variable 'pcs_weight_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:150]: (performance) Variable 'pcs_weight_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:151]: (performance) Variable 'pcs_weight_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:153]: (performance) Variable 'individual_scale_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:154]: (performance) Variable 'individual_scale_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:155]: (performance) Variable 'individual_scale_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsGridSearchParameter.cc:156]: (performance) Variable 'individual_scale_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsInputCenter.cc:69]: (performance) Variable 'PcsInputFile_all_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsInputCenter.cc:91]: (style) Variable 'weight_sum' is assigned a value that is never used. [unreadVariable]
[protocols/scoring/methods/pcs2/PcsInputCenter.cc:93]: (style) Variable 'weight_sum' is assigned a value that is never used. [unreadVariable]
[protocols/scoring/methods/pcs2/PcsInputFile.cc:72]: (performance) Variable 'PcsInputLine_all_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsTensor.cc:100]: (performance) Function parameter 'label' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcs2/PcsTensor.cc:102]: (performance) Variable 'chi_xx_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsTensor.cc:103]: (performance) Variable 'chi_yy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsTensor.cc:104]: (performance) Variable 'chi_xy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsTensor.cc:105]: (performance) Variable 'chi_xz_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsTensor.cc:106]: (performance) Variable 'chi_yz_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsTensor.cc:107]: (performance) Variable 'label_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsTensor.cc:153]: (style) Parameter 'other' can be declared with const [constParameter]
[protocols/scoring/methods/pcs2/PcsTensor.cc:60]: (performance) Variable 'a_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsTensor.cc:61]: (performance) Variable 'b_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsTensor.cc:62]: (performance) Variable 'g_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsTensor.cc:63]: (performance) Variable 'ax_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsTensor.cc:64]: (performance) Variable 'rh_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsTensor.cc:65]: (performance) Variable 'chi_xx_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsTensor.cc:66]: (performance) Variable 'chi_yy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsTensor.cc:67]: (performance) Variable 'chi_xy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsTensor.cc:68]: (performance) Variable 'chi_xz_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsTensor.cc:69]: (performance) Variable 'chi_yz_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsTensor.cc:70]: (performance) Variable 'label_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs2/PcsTensor.hh:141] -> [protocols/scoring/methods/pcs2/PcsTensor.cc:113]: (warning) Function 'reset_tensor' argument order different: declaration 'chi_xx, chi_yy, chi_xy, chi_xz, chi_yz' definition 'chi_xx, chi_xy, chi_xz, chi_yy, chi_yz' [funcArgOrderDifferent]
[protocols/scoring/methods/pcs2/PcsTensor.hh:88] -> [protocols/scoring/methods/pcs2/PcsTensor.cc:95]: (warning) Function 'PcsTensor' argument order different: declaration 'chi_xx, chi_yy, chi_xy, chi_xz, chi_yz, label' definition 'chi_xx, chi_xy, chi_xz, chi_yy, chi_yz, label' [funcArgOrderDifferent]
[protocols/scoring/methods/pcs2/PcsTensor.hh:93]: (performance) Function parameter 'label' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcs/GridSearchIterator.cc:58]: (warning) Member variable 'GridSearchIterator::next_to_return_' is not initialized in the constructor. [uninitMemberVar]
[protocols/scoring/methods/pcs/GridSearchIterator.cc:94]: (performance) Variable 'x_current_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/GridSearchIterator.cc:95]: (performance) Variable 'y_current_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/GridSearchIterator.cc:96]: (performance) Variable 'z_current_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/GridSearchIterator.cc:97]: (performance) Variable 'step_x_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/GridSearchIterator.cc:98]: (performance) Variable 'step_y_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/GridSearchIterator.cc:99]: (performance) Variable 'step_z_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftData.cc:180]: (style) Parameter 'A_all' can be declared with const [constParameter]
[protocols/scoring/methods/pcs/PseudocontactShiftData.cc:327]: (style) Parameter 'P_l_d' can be declared with const [constParameter]
[protocols/scoring/methods/pcs/PseudocontactShiftData.cc:441]: (performance) Variable 'n_pcs_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftData.cc:530]: (performance) Variable 'n_pcs_spin_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftData.cc:531]: (performance) Variable 'n_lanthanides_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftData.cc:581]: (performance) Variable 'n_pcs_spin_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftData.cc:582]: (performance) Variable 'n_lanthanides_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftData.cc:80]: (performance) Variable 'n_pcs_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftData.cc:81]: (performance) Variable 'A_index_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftData.cc:82]: (performance) Variable 'fstyle_A_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftData.cc:83]: (performance) Variable 'fstyle_b_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftData.cc:84]: (performance) Variable 'normalization_1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftData.cc:85]: (performance) Variable 'normalization_2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftData.cc:86]: (performance) Variable 'normalization_3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftData.cc:87]: (performance) Variable 'normalization_factor_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftEnergy.cc:387]: (style) Condition 'print_to_tracer' is always false [knownConditionTrueFalse]
[protocols/scoring/methods/pcs/PseudocontactShiftEnergy.cc:415]: (style) Condition 'print_to_tracer' is always false [knownConditionTrueFalse]
[protocols/scoring/methods/pcs/PseudocontactShiftEnergy.cc:639]: (warning) Member variable 'PCS_Energy_parameters_manager::minimize_best_tensor_' is not initialized in the constructor. [uninitMemberVarPrivate]
[protocols/scoring/methods/pcs/PseudocontactShiftEnergy.cc:747]: (performance) Function parameter 'grid_atom_name_1' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcs/PseudocontactShiftEnergy.cc:748]: (performance) Function parameter 'grid_atom_name_2' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcs/PseudocontactShiftEnergy.hh:197]: (performance) Function parameter 'grid_atom_name_1' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcs/PseudocontactShiftEnergy.hh:198]: (performance) Function parameter 'grid_atom_name_2' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcs/PseudocontactShiftInput.cc:113]: (performance) Variable 'PCS_filename_and_data_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftInput.cc:183]: (style) Variable 'weight_sum' is assigned a value that is never used. [unreadVariable]
[protocols/scoring/methods/pcs/PseudocontactShiftInput.cc:185]: (style) Variable 'weight_sum' is assigned a value that is never used. [unreadVariable]
[protocols/scoring/methods/pcs/PseudocontactShiftInput.cc:94]: (performance) Variable 'PCS_data_line_all_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftTensor.cc:101]: (performance) Variable 'chi_xx_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftTensor.cc:102]: (performance) Variable 'chi_yy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftTensor.cc:103]: (performance) Variable 'chi_xy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftTensor.cc:104]: (performance) Variable 'chi_xz_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftTensor.cc:105]: (performance) Variable 'chi_yz_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftTensor.cc:106]: (performance) Variable 'label_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftTensor.cc:151]: (style) Parameter 'other' can be declared with const [constParameter]
[protocols/scoring/methods/pcs/PseudocontactShiftTensor.cc:59]: (performance) Variable 'a_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftTensor.cc:60]: (performance) Variable 'b_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftTensor.cc:61]: (performance) Variable 'g_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftTensor.cc:62]: (performance) Variable 'ax_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftTensor.cc:63]: (performance) Variable 'rh_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftTensor.cc:64]: (performance) Variable 'chi_xx_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftTensor.cc:65]: (performance) Variable 'chi_yy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftTensor.cc:66]: (performance) Variable 'chi_xy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftTensor.cc:67]: (performance) Variable 'chi_xz_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftTensor.cc:68]: (performance) Variable 'chi_yz_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftTensor.cc:69]: (performance) Variable 'label_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcs/PseudocontactShiftTensor.cc:99]: (performance) Function parameter 'label' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcs/PseudocontactShiftTensor.hh:128] -> [protocols/scoring/methods/pcs/PseudocontactShiftTensor.cc:112]: (warning) Function 'reset_tensor' argument order different: declaration 'chi_xx, chi_yy, chi_xy, chi_xz, chi_yz' definition 'chi_xx, chi_xy, chi_xz, chi_yy, chi_yz' [funcArgOrderDifferent]
[protocols/scoring/methods/pcs/PseudocontactShiftTensor.hh:87] -> [protocols/scoring/methods/pcs/PseudocontactShiftTensor.cc:94]: (warning) Function 'PCS_tensor' argument order different: declaration 'chi_xx, chi_yy, chi_xy, chi_xz, chi_yz, label' definition 'chi_xx, chi_xy, chi_xz, chi_yy, chi_yz, label' [funcArgOrderDifferent]
[protocols/scoring/methods/pcs/PseudocontactShiftTensor.hh:92]: (performance) Function parameter 'label' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcsTs1/GridSearchIterator.cc:58]: (warning) Member variable 'GridSearchIterator_Ts1::next_to_return_' is not initialized in the constructor. [uninitMemberVar]
[protocols/scoring/methods/pcsTs1/GridSearchIterator.cc:94]: (performance) Variable 'x_current_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/GridSearchIterator.cc:95]: (performance) Variable 'y_current_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/GridSearchIterator.cc:96]: (performance) Variable 'z_current_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/GridSearchIterator.cc:97]: (performance) Variable 'step_x_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/GridSearchIterator.cc:98]: (performance) Variable 'step_y_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/GridSearchIterator.cc:99]: (performance) Variable 'step_z_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftData.cc:158]: (style) Parameter 'A_all' can be declared with const [constParameter]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftData.cc:295]: (style) Parameter 'P_l_d' can be declared with const [constParameter]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftData.cc:322]: (performance) Variable 'n_pcs_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftData.cc:411]: (performance) Variable 'n_pcs_spin_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftData.cc:412]: (performance) Variable 'n_lanthanides_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftData.cc:462]: (performance) Variable 'n_pcs_spin_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftData.cc:463]: (performance) Variable 'n_lanthanides_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftData.cc:74]: (performance) Variable 'n_pcs_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftData.cc:75]: (performance) Variable 'A_index_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftData.cc:76]: (performance) Variable 'fstyle_A_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftData.cc:77]: (performance) Variable 'fstyle_b_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftData.cc:78]: (performance) Variable 'normalization_1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftData.cc:79]: (performance) Variable 'normalization_2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftData.cc:80]: (performance) Variable 'normalization_3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftData.cc:81]: (performance) Variable 'normalization_factor_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftEnergy.cc:384]: (style) Condition 'print_to_tracer' is always false [knownConditionTrueFalse]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftEnergy.cc:412]: (style) Condition 'print_to_tracer' is always false [knownConditionTrueFalse]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftEnergy.cc:636]: (warning) Member variable 'PCS_Energy_parameters_manager_Ts1::minimize_best_tensor_' is not initialized in the constructor. [uninitMemberVarPrivate]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftEnergy.cc:744]: (performance) Function parameter 'grid_atom_name_1' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftEnergy.cc:745]: (performance) Function parameter 'grid_atom_name_2' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftEnergy.hh:189]: (performance) Function parameter 'grid_atom_name_1' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftEnergy.hh:190]: (performance) Function parameter 'grid_atom_name_2' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftInput.cc:167]: (style) Variable 'weight_sum' is assigned a value that is never used. [unreadVariable]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftInput.cc:169]: (style) Variable 'weight_sum' is assigned a value that is never used. [unreadVariable]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftInput.cc:78]: (performance) Variable 'PCS_data_line_all_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftInput.cc:97]: (performance) Variable 'PCS_filename_and_data_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftTensor.cc:101]: (performance) Variable 'chi_xx_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftTensor.cc:102]: (performance) Variable 'chi_yy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftTensor.cc:103]: (performance) Variable 'chi_xy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftTensor.cc:104]: (performance) Variable 'chi_xz_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftTensor.cc:105]: (performance) Variable 'chi_yz_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftTensor.cc:106]: (performance) Variable 'label_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftTensor.cc:151]: (style) Parameter 'other' can be declared with const [constParameter]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftTensor.cc:59]: (performance) Variable 'a_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftTensor.cc:60]: (performance) Variable 'b_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftTensor.cc:61]: (performance) Variable 'g_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftTensor.cc:62]: (performance) Variable 'ax_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftTensor.cc:63]: (performance) Variable 'rh_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftTensor.cc:64]: (performance) Variable 'chi_xx_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftTensor.cc:65]: (performance) Variable 'chi_yy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftTensor.cc:66]: (performance) Variable 'chi_xy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftTensor.cc:67]: (performance) Variable 'chi_xz_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftTensor.cc:68]: (performance) Variable 'chi_yz_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftTensor.cc:69]: (performance) Variable 'label_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftTensor.cc:99]: (performance) Function parameter 'label' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftTensor.hh:128] -> [protocols/scoring/methods/pcsTs1/PseudocontactShiftTensor.cc:112]: (warning) Function 'reset_tensor' argument order different: declaration 'chi_xx, chi_yy, chi_xy, chi_xz, chi_yz' definition 'chi_xx, chi_xy, chi_xz, chi_yy, chi_yz' [funcArgOrderDifferent]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftTensor.hh:87] -> [protocols/scoring/methods/pcsTs1/PseudocontactShiftTensor.cc:94]: (warning) Function 'PCS_tensor_Ts1' argument order different: declaration 'chi_xx, chi_yy, chi_xy, chi_xz, chi_yz, label' definition 'chi_xx, chi_xy, chi_xz, chi_yy, chi_yz, label' [funcArgOrderDifferent]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftTensor.hh:92]: (performance) Function parameter 'label' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcsTs2/GridSearchIterator.cc:58]: (warning) Member variable 'GridSearchIterator_Ts2::next_to_return_' is not initialized in the constructor. [uninitMemberVar]
[protocols/scoring/methods/pcsTs2/GridSearchIterator.cc:94]: (performance) Variable 'x_current_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/GridSearchIterator.cc:95]: (performance) Variable 'y_current_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/GridSearchIterator.cc:96]: (performance) Variable 'z_current_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/GridSearchIterator.cc:97]: (performance) Variable 'step_x_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/GridSearchIterator.cc:98]: (performance) Variable 'step_y_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/GridSearchIterator.cc:99]: (performance) Variable 'step_z_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftData.cc:157]: (style) Parameter 'A_all' can be declared with const [constParameter]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftData.cc:294]: (style) Parameter 'P_l_d' can be declared with const [constParameter]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftData.cc:321]: (performance) Variable 'n_pcs_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftData.cc:410]: (performance) Variable 'n_pcs_spin_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftData.cc:411]: (performance) Variable 'n_lanthanides_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftData.cc:461]: (performance) Variable 'n_pcs_spin_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftData.cc:462]: (performance) Variable 'n_lanthanides_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftData.cc:73]: (performance) Variable 'n_pcs_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftData.cc:74]: (performance) Variable 'A_index_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftData.cc:75]: (performance) Variable 'fstyle_A_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftData.cc:76]: (performance) Variable 'fstyle_b_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftData.cc:77]: (performance) Variable 'normalization_1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftData.cc:78]: (performance) Variable 'normalization_2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftData.cc:79]: (performance) Variable 'normalization_3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftData.cc:80]: (performance) Variable 'normalization_factor_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftEnergy.cc:384]: (style) Condition 'print_to_tracer' is always false [knownConditionTrueFalse]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftEnergy.cc:412]: (style) Condition 'print_to_tracer' is always false [knownConditionTrueFalse]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftEnergy.cc:636]: (warning) Member variable 'PCS_Energy_parameters_manager_Ts2::minimize_best_tensor_' is not initialized in the constructor. [uninitMemberVarPrivate]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftEnergy.cc:744]: (performance) Function parameter 'grid_atom_name_1' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftEnergy.cc:745]: (performance) Function parameter 'grid_atom_name_2' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftEnergy.hh:190]: (performance) Function parameter 'grid_atom_name_1' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftEnergy.hh:191]: (performance) Function parameter 'grid_atom_name_2' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftInput.cc:167]: (style) Variable 'weight_sum' is assigned a value that is never used. [unreadVariable]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftInput.cc:169]: (style) Variable 'weight_sum' is assigned a value that is never used. [unreadVariable]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftInput.cc:78]: (performance) Variable 'PCS_data_line_all_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftInput.cc:97]: (performance) Variable 'PCS_filename_and_data_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftTensor.cc:101]: (performance) Variable 'chi_xx_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftTensor.cc:102]: (performance) Variable 'chi_yy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftTensor.cc:103]: (performance) Variable 'chi_xy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftTensor.cc:104]: (performance) Variable 'chi_xz_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftTensor.cc:105]: (performance) Variable 'chi_yz_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftTensor.cc:106]: (performance) Variable 'label_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftTensor.cc:151]: (style) Parameter 'other' can be declared with const [constParameter]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftTensor.cc:59]: (performance) Variable 'a_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftTensor.cc:60]: (performance) Variable 'b_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftTensor.cc:61]: (performance) Variable 'g_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftTensor.cc:62]: (performance) Variable 'ax_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftTensor.cc:63]: (performance) Variable 'rh_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftTensor.cc:64]: (performance) Variable 'chi_xx_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftTensor.cc:65]: (performance) Variable 'chi_yy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftTensor.cc:66]: (performance) Variable 'chi_xy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftTensor.cc:67]: (performance) Variable 'chi_xz_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftTensor.cc:68]: (performance) Variable 'chi_yz_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftTensor.cc:69]: (performance) Variable 'label_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftTensor.cc:99]: (performance) Function parameter 'label' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftTensor.hh:128] -> [protocols/scoring/methods/pcsTs2/PseudocontactShiftTensor.cc:112]: (warning) Function 'reset_tensor' argument order different: declaration 'chi_xx, chi_yy, chi_xy, chi_xz, chi_yz' definition 'chi_xx, chi_xy, chi_xz, chi_yy, chi_yz' [funcArgOrderDifferent]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftTensor.hh:87] -> [protocols/scoring/methods/pcsTs2/PseudocontactShiftTensor.cc:94]: (warning) Function 'PCS_tensor_Ts2' argument order different: declaration 'chi_xx, chi_yy, chi_xy, chi_xz, chi_yz, label' definition 'chi_xx, chi_xy, chi_xz, chi_yy, chi_yz, label' [funcArgOrderDifferent]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftTensor.hh:92]: (performance) Function parameter 'label' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcsTs3/GridSearchIterator.cc:58]: (warning) Member variable 'GridSearchIterator_Ts3::next_to_return_' is not initialized in the constructor. [uninitMemberVar]
[protocols/scoring/methods/pcsTs3/GridSearchIterator.cc:94]: (performance) Variable 'x_current_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/GridSearchIterator.cc:95]: (performance) Variable 'y_current_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/GridSearchIterator.cc:96]: (performance) Variable 'z_current_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/GridSearchIterator.cc:97]: (performance) Variable 'step_x_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/GridSearchIterator.cc:98]: (performance) Variable 'step_y_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/GridSearchIterator.cc:99]: (performance) Variable 'step_z_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftData.cc:158]: (style) Parameter 'A_all' can be declared with const [constParameter]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftData.cc:295]: (style) Parameter 'P_l_d' can be declared with const [constParameter]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftData.cc:321]: (performance) Variable 'n_pcs_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftData.cc:410]: (performance) Variable 'n_pcs_spin_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftData.cc:411]: (performance) Variable 'n_lanthanides_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftData.cc:461]: (performance) Variable 'n_pcs_spin_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftData.cc:462]: (performance) Variable 'n_lanthanides_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftData.cc:74]: (performance) Variable 'n_pcs_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftData.cc:75]: (performance) Variable 'A_index_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftData.cc:76]: (performance) Variable 'fstyle_A_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftData.cc:77]: (performance) Variable 'fstyle_b_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftData.cc:78]: (performance) Variable 'normalization_1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftData.cc:79]: (performance) Variable 'normalization_2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftData.cc:80]: (performance) Variable 'normalization_3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftData.cc:81]: (performance) Variable 'normalization_factor_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftEnergy.cc:384]: (style) Condition 'print_to_tracer' is always false [knownConditionTrueFalse]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftEnergy.cc:412]: (style) Condition 'print_to_tracer' is always false [knownConditionTrueFalse]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftEnergy.cc:636]: (warning) Member variable 'PCS_Energy_parameters_manager_Ts3::minimize_best_tensor_' is not initialized in the constructor. [uninitMemberVarPrivate]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftEnergy.cc:744]: (performance) Function parameter 'grid_atom_name_1' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftEnergy.cc:745]: (performance) Function parameter 'grid_atom_name_2' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftEnergy.hh:189]: (performance) Function parameter 'grid_atom_name_1' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftEnergy.hh:190]: (performance) Function parameter 'grid_atom_name_2' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftInput.cc:167]: (style) Variable 'weight_sum' is assigned a value that is never used. [unreadVariable]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftInput.cc:169]: (style) Variable 'weight_sum' is assigned a value that is never used. [unreadVariable]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftInput.cc:78]: (performance) Variable 'PCS_data_line_all_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftInput.cc:97]: (performance) Variable 'PCS_filename_and_data_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftTensor.cc:101]: (performance) Variable 'chi_xx_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftTensor.cc:102]: (performance) Variable 'chi_yy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftTensor.cc:103]: (performance) Variable 'chi_xy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftTensor.cc:104]: (performance) Variable 'chi_xz_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftTensor.cc:105]: (performance) Variable 'chi_yz_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftTensor.cc:106]: (performance) Variable 'label_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftTensor.cc:151]: (style) Parameter 'other' can be declared with const [constParameter]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftTensor.cc:59]: (performance) Variable 'a_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftTensor.cc:60]: (performance) Variable 'b_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftTensor.cc:61]: (performance) Variable 'g_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftTensor.cc:62]: (performance) Variable 'ax_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftTensor.cc:63]: (performance) Variable 'rh_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftTensor.cc:64]: (performance) Variable 'chi_xx_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftTensor.cc:65]: (performance) Variable 'chi_yy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftTensor.cc:66]: (performance) Variable 'chi_xy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftTensor.cc:67]: (performance) Variable 'chi_xz_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftTensor.cc:68]: (performance) Variable 'chi_yz_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftTensor.cc:69]: (performance) Variable 'label_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftTensor.cc:99]: (performance) Function parameter 'label' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftTensor.hh:128] -> [protocols/scoring/methods/pcsTs3/PseudocontactShiftTensor.cc:112]: (warning) Function 'reset_tensor' argument order different: declaration 'chi_xx, chi_yy, chi_xy, chi_xz, chi_yz' definition 'chi_xx, chi_xy, chi_xz, chi_yy, chi_yz' [funcArgOrderDifferent]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftTensor.hh:87] -> [protocols/scoring/methods/pcsTs3/PseudocontactShiftTensor.cc:94]: (warning) Function 'PCS_tensor_Ts3' argument order different: declaration 'chi_xx, chi_yy, chi_xy, chi_xz, chi_yz, label' definition 'chi_xx, chi_xy, chi_xz, chi_yy, chi_yz, label' [funcArgOrderDifferent]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftTensor.hh:92]: (performance) Function parameter 'label' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcsTs4/GridSearchIterator.cc:58]: (warning) Member variable 'GridSearchIterator_Ts4::next_to_return_' is not initialized in the constructor. [uninitMemberVar]
[protocols/scoring/methods/pcsTs4/GridSearchIterator.cc:94]: (performance) Variable 'x_current_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/GridSearchIterator.cc:95]: (performance) Variable 'y_current_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/GridSearchIterator.cc:96]: (performance) Variable 'z_current_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/GridSearchIterator.cc:97]: (performance) Variable 'step_x_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/GridSearchIterator.cc:98]: (performance) Variable 'step_y_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/GridSearchIterator.cc:99]: (performance) Variable 'step_z_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftData.cc:171]: (style) Parameter 'A_all' can be declared with const [constParameter]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftData.cc:308]: (style) Parameter 'P_l_d' can be declared with const [constParameter]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftData.cc:335]: (performance) Variable 'n_pcs_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftData.cc:424]: (performance) Variable 'n_pcs_spin_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftData.cc:425]: (performance) Variable 'n_lanthanides_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftData.cc:475]: (performance) Variable 'n_pcs_spin_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftData.cc:476]: (performance) Variable 'n_lanthanides_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftData.cc:87]: (performance) Variable 'n_pcs_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftData.cc:88]: (performance) Variable 'A_index_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftData.cc:89]: (performance) Variable 'fstyle_A_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftData.cc:90]: (performance) Variable 'fstyle_b_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftData.cc:91]: (performance) Variable 'normalization_1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftData.cc:92]: (performance) Variable 'normalization_2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftData.cc:93]: (performance) Variable 'normalization_3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftData.cc:94]: (performance) Variable 'normalization_factor_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftEnergy.cc:384]: (style) Condition 'print_to_tracer' is always false [knownConditionTrueFalse]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftEnergy.cc:412]: (style) Condition 'print_to_tracer' is always false [knownConditionTrueFalse]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftEnergy.cc:636]: (warning) Member variable 'PCS_Energy_parameters_manager_Ts4::minimize_best_tensor_' is not initialized in the constructor. [uninitMemberVarPrivate]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftEnergy.cc:744]: (performance) Function parameter 'grid_atom_name_1' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftEnergy.cc:745]: (performance) Function parameter 'grid_atom_name_2' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftEnergy.hh:189]: (performance) Function parameter 'grid_atom_name_1' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftEnergy.hh:190]: (performance) Function parameter 'grid_atom_name_2' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftInput.cc:106]: (performance) Variable 'PCS_filename_and_data_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftInput.cc:176]: (style) Variable 'weight_sum' is assigned a value that is never used. [unreadVariable]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftInput.cc:178]: (style) Variable 'weight_sum' is assigned a value that is never used. [unreadVariable]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftInput.cc:87]: (performance) Variable 'PCS_data_line_all_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftTensor.cc:100]: (performance) Function parameter 'label' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftTensor.cc:102]: (performance) Variable 'chi_xx_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftTensor.cc:103]: (performance) Variable 'chi_yy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftTensor.cc:104]: (performance) Variable 'chi_xy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftTensor.cc:105]: (performance) Variable 'chi_xz_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftTensor.cc:106]: (performance) Variable 'chi_yz_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftTensor.cc:107]: (performance) Variable 'label_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftTensor.cc:152]: (style) Parameter 'other' can be declared with const [constParameter]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftTensor.cc:60]: (performance) Variable 'a_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftTensor.cc:61]: (performance) Variable 'b_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftTensor.cc:62]: (performance) Variable 'g_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftTensor.cc:63]: (performance) Variable 'ax_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftTensor.cc:64]: (performance) Variable 'rh_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftTensor.cc:65]: (performance) Variable 'chi_xx_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftTensor.cc:66]: (performance) Variable 'chi_yy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftTensor.cc:67]: (performance) Variable 'chi_xy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftTensor.cc:68]: (performance) Variable 'chi_xz_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftTensor.cc:69]: (performance) Variable 'chi_yz_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftTensor.cc:70]: (performance) Variable 'label_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftTensor.hh:128] -> [protocols/scoring/methods/pcsTs4/PseudocontactShiftTensor.cc:113]: (warning) Function 'reset_tensor' argument order different: declaration 'chi_xx, chi_yy, chi_xy, chi_xz, chi_yz' definition 'chi_xx, chi_xy, chi_xz, chi_yy, chi_yz' [funcArgOrderDifferent]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftTensor.hh:87] -> [protocols/scoring/methods/pcsTs4/PseudocontactShiftTensor.cc:95]: (warning) Function 'PCS_tensor_Ts4' argument order different: declaration 'chi_xx, chi_yy, chi_xy, chi_xz, chi_yz, label' definition 'chi_xx, chi_xy, chi_xz, chi_yy, chi_yz, label' [funcArgOrderDifferent]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftTensor.hh:92]: (performance) Function parameter 'label' should be passed by const reference. [passedByValue]
[protocols/scoring/methods/ResidualDipolarCouplingEnergyRigidSegments.cc:174]: (style) Variable 'rdc_segment_data' can be declared with const [constVariable]
[protocols/scoring/methods/saxs/PDDFEnergy.cc:171]: (style) Parameter 'ref_pose' can be declared with const [constParameter]
[protocols/scoring/methods/saxs/PDDFEnergy.cc:74]: (warning) Member variable 'PDDFEnergy::ff_manager_' is not initialized in the constructor. [uninitMemberVar]
[protocols/scoring/methods/saxs/PDDFEnergy.cc:74]: (warning) Member variable 'PDDFEnergy::if_hydrogens_' is not initialized in the constructor. [uninitMemberVar]
[protocols/scoring/methods/saxs/PDDFEnergy.cc:92]: (warning) Member variable 'PDDFEnergy::ff_manager_' is not initialized in the constructor. [uninitMemberVar]
[protocols/scoring/methods/saxs/PDDFEnergy.cc:97]: (performance) Variable 'norm_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/scoring/VDW_CachedRepScreenInfo.cc:192]: (warning) Assert statement calls a function which may have desired side effects: 'data'. [assertWithSideEffect]
[protocols/scoring/VDW_CachedRepScreenInfo.cc:256]: (style) Parameter 'pose_pointers' can be declared with const [constParameter]
[protocols/scoring/VDW_CachedRepScreenInfo.cc:68]: (performance) Variable 'VDW_rep_screen_info_list_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/seeded_abinitio/CAcstGenerator.cc:57]: (warning) Member variable 'CAcstGenerator::add_cst_seed_' is not initialized in the constructor. [uninitMemberVar]
[protocols/seeded_abinitio/CAcstGenerator.cc:57]: (warning) Member variable 'CAcstGenerator::replace_' is not initialized in the constructor. [uninitMemberVar]
[protocols/seeded_abinitio/CAcstGenerator.cc:57]: (warning) Member variable 'CAcstGenerator::template_presence_' is not initialized in the constructor. [uninitMemberVar]
[protocols/seeded_abinitio/CAcstGenerator.cc:60]: (performance) Variable 'stddev_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/seeded_abinitio/CAcstGenerator.cc:77]: (style) Parameter 'residue' can be declared with const [constParameter]
[protocols/seeded_abinitio/CAcstGenerator.cc:89]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/seeded_abinitio/CAcstGenerator.cc:93]: (style) Parameter 'seeds' can be declared with const [constParameter]
[protocols/seeded_abinitio/CAcstGenerator.cc:94]: (style) Parameter 'clear_area' can be declared with const [constParameter]
[protocols/seeded_abinitio/CloseFold.cc:100]: (warning) Member variable 'CloseFold::ccd_' is not initialized in the constructor. [uninitMemberVar]
[protocols/seeded_abinitio/CloseFold.cc:104]: (performance) Variable 'secstructure_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/seeded_abinitio/CloseFold.cc:278]: (style) Parameter 'cut_points' can be declared with const [constParameter]
[protocols/seeded_abinitio/CloseFold.cc:302]: (style) Condition 'chainbreak_present' is always true [knownConditionTrueFalse]
[protocols/seeded_abinitio/CoordinateCst.cc:122]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/seeded_abinitio/CoordinateCst.cc:142]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/seeded_abinitio/CoordinateCst.cc:77]: (performance) Variable 'stddev_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/seeded_abinitio/DefineMovableLoops.cc:204]: (style) Parameter 'cut_points' can be declared with const [constParameter]
[protocols/seeded_abinitio/DefineMovableLoops.cc:77]: (performance) Variable 'secstructure_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/seeded_abinitio/GrowPeptides.cc:194]: (style) Variable 'saved_pose' is assigned a value that is never used. [unreadVariable]
[protocols/seeded_abinitio/GrowPeptides.cc:268]: (style) Variable 'cutpoints' is assigned a value that is never used. [unreadVariable]
[protocols/seeded_abinitio/GrowPeptides.cc:287]: (style) Variable 'cutpoints' is assigned a value that is never used. [unreadVariable]
[protocols/seeded_abinitio/SeededAbinitio_util.cc:196]: (style) Assignment of function parameter has no effect outside the function. [uselessAssignmentArg]
[protocols/seeded_abinitio/SeedFoldTree.cc:345]: (style) Variable 'rb_jump' is assigned a value that is never used. [unreadVariable]
[protocols/seeded_abinitio/SeedFoldTree.cc:74]: (warning) Member variable 'SeedFoldTree::anchor_specified_' is not initialized in the constructor. [uninitMemberVar]
[protocols/seeded_abinitio/SeedFoldTree.cc:74]: (warning) Member variable 'SeedFoldTree::ddg_based_' is not initialized in the constructor. [uninitMemberVar]
[protocols/seeded_abinitio/SeedFoldTree.cc:74]: (warning) Member variable 'SeedFoldTree::pdb_contains_target_' is not initialized in the constructor. [uninitMemberVar]
[protocols/seeded_abinitio/SeedFoldTree.cc:74]: (warning) Member variable 'SeedFoldTree::set_jumps_manually' is not initialized in the constructor. [uninitMemberVar]
[protocols/seeded_abinitio/SeedFoldTree.cc:74]: (warning) Member variable 'SeedFoldTree::twochains_' is not initialized in the constructor. [uninitMemberVar]
[protocols/seeded_abinitio/SeedFoldTree.cc:83]: (performance) Variable 'fold_tree_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/seeded_abinitio/SeedSetupMover.cc:244]: (style) Parameter 'seeds' can be declared with const [constParameter]
[protocols/seeded_abinitio/SeedSetupMover.cc:310]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/seeded_abinitio/SeedSetupMover.cc:72]: (warning) Member variable 'SeedSetupMover::design_' is not initialized in the constructor. [uninitMemberVar]
[protocols/seeded_abinitio/SeedSetupMover.cc:72]: (warning) Member variable 'SeedSetupMover::interface_chi1_' is not initialized in the constructor. [uninitMemberVar]
[protocols/seeded_abinitio/SeedSetupMover.cc:72]: (warning) Member variable 'SeedSetupMover::interface_chi2_' is not initialized in the constructor. [uninitMemberVar]
[protocols/seeded_abinitio/SeedSetupMover.cc:85]: (performance) Variable 'norepack_res_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/seeded_abinitio/SeedSetupMover.cc:86]: (performance) Variable 'design_res_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/seeded_abinitio/SegmentHybridizer.cc:103]: (warning) Member variable 'SegmentHybridizer::all_movable_' is not initialized in the constructor. [uninitMemberVar]
[protocols/seeded_abinitio/SegmentHybridizer.cc:103]: (warning) Member variable 'SegmentHybridizer::auto_mm_' is not initialized in the constructor. [uninitMemberVar]
[protocols/seeded_abinitio/SegmentHybridizer.cc:103]: (warning) Member variable 'SegmentHybridizer::extra_min_' is not initialized in the constructor. [uninitMemberVar]
[protocols/seeded_abinitio/SegmentHybridizer.cc:103]: (warning) Member variable 'SegmentHybridizer::tries_' is not initialized in the constructor. [uninitMemberVar]
[protocols/seeded_abinitio/SegmentHybridizer.cc:103]: (warning) Member variable 'SegmentHybridizer::use_frags_' is not initialized in the constructor. [uninitMemberVar]
[protocols/seeded_abinitio/SegmentHybridizer.cc:103]: (warning) Member variable 'SegmentHybridizer::use_seq_' is not initialized in the constructor. [uninitMemberVar]
[protocols/seeded_abinitio/SegmentHybridizer.cc:159]: (style) Parameter 'frame' can be declared with const [constParameter]
[protocols/seeded_abinitio/SegmentHybridizer.cc:301]: (style) Variable 'pose_in' is assigned a value that is never used. [unreadVariable]
[protocols/seeded_abinitio/SwapSegment.cc:114]: (style) Parameter 'seeds' can be declared with const [constParameter]
[protocols/seeded_abinitio/SwapSegment.cc:72]: (warning) Member variable 'SwapSegment::copy_sidechains_' is not initialized in the constructor. [uninitMemberVar]
[protocols/seeded_abinitio/SwapSegment.cc:72]: (warning) Member variable 'SwapSegment::seeds_presence_' is not initialized in the constructor. [uninitMemberVar]
[protocols/seeded_abinitio/SwapSegment.cc:72]: (warning) Member variable 'SwapSegment::swap_segment_' is not initialized in the constructor. [uninitMemberVar]
[protocols/seeded_abinitio/SwapSegment.cc:91]: (style) Parameter 'seeds' can be declared with const [constParameter]
[protocols/sewing/data_storage/Basis.cc:42]: (performance) Variable 'segment_id_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/Basis.cc:43]: (performance) Variable 'resnum_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/Basis.cc:49]: (performance) Variable 'segment_id_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/Basis.cc:50]: (performance) Variable 'resnum_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/HashedSmartAssembly.cc:60] -> [protocols/sewing/data_storage/HashedSmartAssembly.cc:101]: (style) Argument '!n_terminus' to function get_random_segment_id is always 0 [constArgument]
[protocols/sewing/data_storage/HashedSmartAssembly.cc:60] -> [protocols/sewing/data_storage/HashedSmartAssembly.cc:284]: (style) Argument '!n_terminus' to function get_random_segment_id is always 1 [constArgument]
[protocols/sewing/data_storage/LigandResidue.hh:110]: (performance) Variable 'ligand_atom' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/LigandResidue.hh:111]: (performance) Variable 'segment_id' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/LigandResidue.hh:112]: (performance) Variable 'residue_atom' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/LigandResidue.hh:113]: (performance) Variable 'residue_number' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/LigandResidue.hh:116]: (performance) Variable 'segment_id' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/LigandResidue.hh:117]: (performance) Variable 'residue_number' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/SmartAssembly.cc:139]: (performance) Variable 'segment_vector_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/SmartAssembly.cc:168]: (performance) Function parameter 'start_node_vital_segments' should be passed by const reference. [passedByValue]
[protocols/sewing/data_storage/SmartAssembly.cc:223]: (performance) Function parameter 'start_node_vital_segments' should be passed by const reference. [passedByValue]
[protocols/sewing/data_storage/SmartAssembly.cc:48]: (warning) Member variable 'SmartAssembly::last_change_' is not initialized in the constructor. [uninitMemberVar]
[protocols/sewing/data_storage/SmartAssembly.cc:48]: (warning) Member variable 'SmartAssembly::last_change_was_n_terminal_' is not initialized in the constructor. [uninitMemberVar]
[protocols/sewing/data_storage/SmartAssembly.cc:48]: (warning) Member variable 'SmartAssembly::modifiable_terminus_' is not initialized in the constructor. [uninitMemberVar]
[protocols/sewing/data_storage/SmartAssembly.cc:48]: (warning) Member variable 'SmartAssembly::output_partner_' is not initialized in the constructor. [uninitMemberVar]
[protocols/sewing/data_storage/SmartAssembly.cc:52]: (performance) Variable 'all_basis_pairs_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/SmartAssembly.cc:558]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[protocols/sewing/data_storage/SmartAssembly.cc:887] -> [protocols/sewing/data_storage/SmartAssembly.cc:908]: (style) Condition 'max_bp_index==0' is always false [knownConditionTrueFalse]
[protocols/sewing/data_storage/SmartSegment.cc:27]: (performance) Variable 'segment_id_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/SmartSegment.cc:28]: (performance) Variable 'n_terminal_neighbor_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/SmartSegment.cc:29]: (performance) Variable 'c_terminal_neighbor_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/SmartSegment.cc:32]: (performance) Variable 'n_terminal_parent_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/SmartSegment.cc:33]: (performance) Variable 'c_terminal_parent_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/SmartSegment.cc:36]: (performance) Variable 'length_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/SmartSegment.cc:402]: (performance) Function parameter 'vital' should be passed by const reference. [passedByValue]
[protocols/sewing/data_storage/SmartSegment.cc:428]: (style) Variable 'src_vec' is assigned a value that is never used. [unreadVariable]
[protocols/sewing/data_storage/SmartSegment.cc:42]: (performance) Variable 'segment_id_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/SmartSegment.cc:43]: (performance) Variable 'n_terminal_neighbor_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/SmartSegment.cc:44]: (performance) Variable 'c_terminal_neighbor_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/SmartSegment.cc:47]: (performance) Variable 'n_terminal_parent_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/SmartSegment.cc:48]: (performance) Variable 'c_terminal_parent_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/SmartSegment.cc:51]: (performance) Variable 'length_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/SmartSegment.cc:56]: (performance) Variable 'segment_id_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/SmartSegment.cc:57]: (performance) Variable 'n_terminal_neighbor_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/SmartSegment.cc:58]: (performance) Variable 'c_terminal_neighbor_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/SmartSegment.cc:61]: (performance) Variable 'n_terminal_parent_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/SmartSegment.cc:62]: (performance) Variable 'c_terminal_parent_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/SmartSegment.cc:65]: (performance) Variable 'length_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/SmartSegment.cc:88]: (performance) Variable 'segment_id_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/data_storage/SmartSewingResidue.cc:24]: (warning) Member variable 'SmartSewingResidue::type_' is not initialized in the constructor. [uninitMemberVar]
[protocols/sewing/data_storage/SmartSewingResidue.cc:34]: (warning) Member variable 'SmartSewingResidue::type_' is not initialized in the constructor. [uninitMemberVar]
[protocols/sewing/data_storage/SmartSewingResidue.cc:92]: (performance) Function parameter 'new_amino_acid_type' should be passed by const reference. [passedByValue]
[protocols/sewing/hashing/AlignmentFileGeneratorMover.cc:100]: (warning) Member variable 'AlignmentFileGeneratorMover::set_segments_from_dssp_' is not initialized in the constructor. [uninitMemberVar]
[protocols/sewing/hashing/AlignmentFileGeneratorMover.cc:104]: (performance) Variable 'basis_map_generator_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/hashing/AlignmentFileGeneratorMover.cc:112]: (performance) Variable 'basis_map_generator_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/hashing/AlignmentFileGeneratorMover.cc:1292]: (style) Condition 'artificial_loop' is always false [knownConditionTrueFalse]
[protocols/sewing/hashing/AlignmentFileGeneratorMover.cc:1741]: (performance) Function parameter 'req' should be passed by const reference. [passedByValue]
[protocols/sewing/hashing/AlignmentFileGeneratorMover.cc:230]: (performance) Function parameter 'tag_name' should be passed by const reference. [passedByValue]
[protocols/sewing/hashing/AlignmentFileGeneratorMover.cc:64]: (warning) Member variable 'AlignmentFileGeneratorMover::set_segments_from_dssp_' is not initialized in the constructor. [uninitMemberVar]
[protocols/sewing/hashing/AlignmentFileGeneratorMover.cc:68]: (performance) Variable 'basis_map_generator_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/hashing/AlignmentFileGeneratorMover.cc:72]: (warning) Member variable 'AlignmentFileGeneratorMover::set_segments_from_dssp_' is not initialized in the constructor. [uninitMemberVar]
[protocols/sewing/hashing/AlignmentFileGeneratorMover.cc:92]: (warning) Member variable 'AlignmentFileGeneratorMover::set_segments_from_dssp_' is not initialized in the constructor. [uninitMemberVar]
[protocols/sewing/hashing/AlignmentFileGeneratorMover.cc:97]: (performance) Variable 'basis_map_generator_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/hashing/AlignmentGenerator.cc:42]: (performance) Function parameter 'pdbsegs' should be passed by const reference. [passedByValue]
[protocols/sewing/hashing/AlignmentGenerator.cc:88]: (style) Parameter 'hasher_settings' can be declared with const [constParameter]
[protocols/sewing/hashing/AlignmentGenerator.cc:97]: (style) Parameter 'pdbsegs' can be declared with const [constParameter]
[protocols/sewing/hashing/BasisMapGenerator.cc:219]: (performance) Variable 'hasher_settings_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/hashing/BasisMapGenerator.cc:66]: (performance) Function parameter 'model_file_name' should be passed by const reference. [passedByValue]
[protocols/sewing/hashing/BasisMapGenerator.cc:67]: (performance) Function parameter 'alignment_file_name' should be passed by const reference. [passedByValue]
[protocols/sewing/hashing/BasisMapGenerator.cc:69]: (performance) Variable 'basis_map_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/hashing/BasisMapGenerator.cc:78]: (performance) Function parameter 'model_file_name' should be passed by const reference. [passedByValue]
[protocols/sewing/hashing/BasisMapGenerator.cc:80]: (performance) Variable 'basis_map_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/hashing/BasisMapGenerator.cc:852]: (style) Parameter 'as' can be declared with const [constParameter]
[protocols/sewing/hashing/BasisMapGenerator.cc:866]: (style) Parameter 'hs' can be declared with const [constParameter]
[protocols/sewing/hashing/BasisMapGenerator.cc:91]: (performance) Variable 'basis_map_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/hashing/EdgeMapGenerator.cc:154]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[protocols/sewing/hashing/EdgeMapGenerator.cc:161]: (style) Parameter 'pdbsegs' can be declared with const [constParameter]
[protocols/sewing/hashing/EdgeMapGenerator.cc:164]: (style) Parameter 'hs' can be declared with const [constParameter]
[protocols/sewing/hashing/EdgeMapGenerator.cc:488]: (performance) Function parameter 'edge_file_name' should be passed by const reference. [passedByValue]
[protocols/sewing/hashing/EdgeMapGenerator.cc:48]: (performance) Function parameter 'edge_file_name' should be passed by const reference. [passedByValue]
[protocols/sewing/hashing/EdgeMapGenerator.cc:60]: (performance) Function parameter 'edge_file_name' should be passed by const reference. [passedByValue]
[protocols/sewing/hashing/EdgeMapGenerator.cc:60]: (performance) Function parameter 'model_file_name' should be passed by const reference. [passedByValue]
[protocols/sewing/hashing/Hasher.cc:252]: (style) Variable 'curr_atom' is assigned a value that is never used. [unreadVariable]
[protocols/sewing/hashing/Hasher.cc:82]: (performance) Variable 'segment_vector_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/hashing/Hasher.cc:98]: (style) Parameter 'hasher_settings' can be declared with const [constParameter]
[protocols/sewing/hashing/hasher_data.hh:113]: (performance) Variable 'max_clash_score' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/hashing/hasher_data.hh:114]: (performance) Variable 'min_hash_score' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/hashing/hasher_data.hh:115]: (performance) Variable 'boxes_per_dimension' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/hashing/LigandBindingResPlacer.cc:1066]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[protocols/sewing/hashing/LigandBindingResPlacer.cc:49]: (performance) Variable 'atom_types_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/hashing/LigandBindingResPlacer.cc:64]: (style) Redundant condition: contact->segment_id==0. 'A || (!A && B)' is equivalent to 'A || B' [redundantCondition]
[protocols/sewing/movers/AppendAssemblyMover.cc:273]: (performance) Function parameter 'required' should be passed by const reference. [passedByValue]
[protocols/sewing/movers/AppendAssemblyMover.cc:292]: (performance) Function parameter 'start_node_vital_segments' should be passed by const reference. [passedByValue]
[protocols/sewing/movers/AppendAssemblyMover.cc:389]: (style) Unused variable: pdb_conformers [unusedVariable]
[protocols/sewing/movers/AssemblyMover.cc:201]: (style) Variable 'revertable_move' is assigned a value that is never used. [unreadVariable]
[protocols/sewing/movers/AssemblyMover.cc:202]: (style) The scope of the variable 'revert' can be reduced. [variableScope]
[protocols/sewing/movers/AssemblyMover.cc:202]: (style) Variable 'revert' is assigned a value that is never used. [unreadVariable]
[protocols/sewing/movers/AssemblyMover.cc:204]: (style) The scope of the variable 'scored_this_cycle' can be reduced. [variableScope]
[protocols/sewing/movers/AssemblyMover.cc:204]: (style) Variable 'scored_this_cycle' is assigned a value that is never used. [unreadVariable]
[protocols/sewing/movers/AssemblyMover.cc:47]: (warning) Member variable 'AssemblyMover::hashed_' is not initialized in the constructor. [uninitMemberVar]
[protocols/sewing/movers/AssemblyMover.cc:47]: (warning) Member variable 'AssemblyMover::recover_lowest_assembly_' is not initialized in the constructor. [uninitMemberVar]
[protocols/sewing/movers/AssemblyMover.cc:52]: (performance) Variable 'min_cycles_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/movers/AssemblyMover.cc:53]: (performance) Variable 'max_cycles_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/movers/AssemblyMover.cc:54]: (performance) Variable 'start_temperature_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/movers/AssemblyMover.cc:55]: (performance) Variable 'end_temperature_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/movers/AssemblyMover.cc:56]: (performance) Variable 'add_probability_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/movers/AssemblyMover.cc:57]: (performance) Variable 'delete_probability_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/movers/AssemblyMover.cc:58]: (performance) Variable 'conformer_switch_probability_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/movers/AssemblyMover.cc:60]: (performance) Variable 'output_pose_count_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/movers/AssemblyMover.cc:71]: (performance) Variable 'edge_map_generator_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/movers/AssemblyMover.cc:741]: (performance) Function parameter 'models' should be passed by const reference. [passedByValue]
[protocols/sewing/movers/AssemblyMover.cc:746]: (performance) Function parameter 'edges' should be passed by const reference. [passedByValue]
[protocols/sewing/movers/AssemblyMover.cc:916]: (performance) Function parameter 'tag_name' should be passed by const reference. [passedByValue]
[protocols/sewing/movers/AssemblyMover.cc:928]: (style) Parameter 'attributes' can be declared with const [constParameter]
[protocols/sewing/requirements/AssemblyRequirementFactory.cc:113]: (performance) Function parameter 'tag_name' should be passed by const reference. [passedByValue]
[protocols/sewing/requirements/ClashRequirement.cc:32]: (performance) Variable 'maximum_clashes_allowed_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/requirements/ClashRequirement.cc:33]: (performance) Variable 'clash_radius_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/requirements/ClashRequirement.cc:42]: (performance) Variable 'maximum_clashes_allowed_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/requirements/ClashRequirement.cc:43]: (performance) Variable 'clash_radius_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/requirements/KeepLigandContactsRequirement.cc:35]: (performance) Variable 'contact_distance_cutoff_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/requirements/KeepLigandContactsRequirement.cc:44]: (performance) Variable 'contact_distance_cutoff_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/requirements/LigandClashRequirement.cc:40]: (performance) Variable 'atom_types_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/scoring/AssemblyScorerFactory.cc:144]: (performance) Function parameter 'tag_name' should be passed by const reference. [passedByValue]
[protocols/sewing/scoring/InterModelMotifScorer.cc:93] -> [protocols/sewing/scoring/InterModelMotifScorer.cc:95]: (style) Redundant initialization for 'second_segment'. The initialized value is overwritten before it is read. [redundantInitialization]
[protocols/sewing/scoring/LigandScorer.cc:118]: (style) Condition '!(current_ligand_score>0.0)' is always true [knownConditionTrueFalse]
[protocols/sewing/scoring/MotifScorer.cc:51]: (performance) Variable 'weight_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/sewing/scoring/SubsetPartnerMotifScorer.cc:166]: (performance) Function parameter 'starts_and_ends' should be passed by const reference. [passedByValue]
[protocols/sic_dock/designability_score.cc:69]: (performance) Function parameter 'datadir' should be passed by const reference. [passedByValue]
[protocols/sic_dock/designability_score.cc:71]: (warning) Struct 'XfoxmScore' does not have a copy constructor which is recommended since it has dynamic memory/resource allocation(s). [noCopyConstructor]
[protocols/sic_dock/designability_score.cc:71]: (warning) Struct 'XfoxmScore' does not have a destructor which is recommended since it has dynamic memory/resource allocation(s). [noDestructor]
[protocols/sic_dock/designability_score.cc:71]: (warning) Struct 'XfoxmScore' does not have a operator= which is recommended since it has dynamic memory/resource allocation(s). [noOperatorEq]
[protocols/sic_dock/loophash_util.cc:207] -> [protocols/sic_dock/loophash_util.cc:212]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/sic_dock/scores/MotifHashRigidScore.cc:177]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[protocols/sic_dock/scores/MotifHashRigidScore.cc:178]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[protocols/sic_dock/scores/MotifHashRigidScore.cc:184]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[protocols/sic_dock/scores/MotifHashRigidScore.cc:185]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[protocols/sic_dock/scores/TrisBpyScore.cc:53] -> [protocols/sic_dock/scores/TrisBpyScore.cc:136]: (style) Local variable 'N' shadows outer variable [shadowVariable]
[protocols/sic_dock/scores/TrisBpyScore.cc:54] -> [protocols/sic_dock/scores/TrisBpyScore.cc:137]: (style) Local variable 'CA' shadows outer variable [shadowVariable]
[protocols/sic_dock/scores/TrisBpyScore.cc:55] -> [protocols/sic_dock/scores/TrisBpyScore.cc:138]: (style) Local variable 'C' shadows outer variable [shadowVariable]
[protocols/sic_dock/xyzStripeHashPoseWithMeta.hh:114] -> [protocols/sic_dock/xyzStripeHashPoseWithMeta.hh:120]: (style) Condition 'core::pose::PoseCoordPickMode_BB==m' is always false [knownConditionTrueFalse]
[protocols/sic_dock/xyzStripeHashPoseWithMeta.hh:93] -> [protocols/sic_dock/xyzStripeHashPoseWithMeta.hh:125]: (style) Local variable 'natom' shadows outer variable [shadowVariable]
[protocols/simple_ddg/ddG.cc:589] -> [protocols/simple_ddg/ddG.cc:598]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/simple_ddg/SSElementBisectddGFilter.cc:102]: (performance) Variable 'relax_mover_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_ddg/SSElementBisectddGFilter.cc:105]: (warning) Member variable 'SSElementBisectddGFilter::convert_charged_res_to_ala_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_ddg/SSElementBisectddGFilter.cc:105]: (warning) Member variable 'SSElementBisectddGFilter::only_c_term_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_ddg/SSElementBisectddGFilter.cc:105]: (warning) Member variable 'SSElementBisectddGFilter::only_n_term_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_ddg/SSElementBisectddGFilter.cc:105]: (warning) Member variable 'SSElementBisectddGFilter::report_avg_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_ddg/SSElementBisectddGFilter.cc:105]: (warning) Member variable 'SSElementBisectddGFilter::report_sasa_instead_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_ddg/SSElementBisectddGFilter.cc:105]: (warning) Member variable 'SSElementBisectddGFilter::skip_ss_element_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_ddg/SSElementBisectddGFilter.cc:152]: (style) Variable 'endSS' is assigned a value that is never used. [unreadVariable]
[protocols/simple_ddg/SSElementBisectddGFilter.cc:218]: (style) Variable 'chain1' is assigned a value that is never used. [unreadVariable]
[protocols/simple_ddg/SSElementBisectddGFilter.cc:219]: (style) Variable 'chain2' is assigned a value that is never used. [unreadVariable]
[protocols/simple_ddg/SSElementBisectddGFilter.cc:93]: (performance) Variable 'scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_ddg/SSElementBisectddGFilter.cc:94]: (performance) Variable 'threshold_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_ddg/SSElementBisectddGFilter.cc:96]: (performance) Variable 'ignore_terminal_SS_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_filters/AbinitioBaseFilter.cc:56]: (warning) Member variable 'AbinitioBaseFilter::beta_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/AbinitioBaseFilter.cc:56]: (warning) Member variable 'AbinitioBaseFilter::beta_ratio_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/AbinitioBaseFilter.cc:56]: (warning) Member variable 'AbinitioBaseFilter::max_helix_length_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/AbinitioBaseFilter.cc:59]: (performance) Variable 'sstype_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_filters/AngleToVectorFilter.hh:61]: (performance) Function parameter 'a' should be passed by const reference. [passedByValue]
[protocols/simple_filters/AngleToVectorFilter.hh:63]: (performance) Function parameter 'a' should be passed by const reference. [passedByValue]
[protocols/simple_filters/AtomicContactFilter.cc:48]: (warning) Member variable 'AtomicContactFilter::backbone_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/AtomicContactFilter.cc:48]: (warning) Member variable 'AtomicContactFilter::protons_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/AtomicContactFilter.cc:48]: (warning) Member variable 'AtomicContactFilter::sidechain_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/AtomicDistanceFilter.cc:46]: (warning) Member variable 'AtomicDistanceFilter::astype1_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/AtomicDistanceFilter.cc:46]: (warning) Member variable 'AtomicDistanceFilter::astype2_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/CamShiftEvaluator.cc:50]: (performance) Function parameter 'cs_file' should be passed by const reference. [passedByValue]
[protocols/simple_filters/CamShiftEvaluator.cc:50]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[protocols/simple_filters/EnergyPerResidueFilter.cc:213]: (performance) Function parameter 'name' should be passed by const reference. [passedByValue]
[protocols/simple_filters/EnergyPerResidueFilter.hh:32]: (warning) Member variable 'EnergyPerResidueFilter::bb_bb_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/EnergyPerResidueFilter.hh:32]: (warning) Member variable 'EnergyPerResidueFilter::score_type_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/EnergyPerResidueFilter.hh:32]: (warning) Member variable 'EnergyPerResidueFilter::select_around_resnums_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/EnergyPerResidueFilter.hh:32]: (warning) Member variable 'EnergyPerResidueFilter::select_resnums_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/EnergyPerResidueFilter.hh:32]: (warning) Member variable 'EnergyPerResidueFilter::whole_interface_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/EnergyPerResidueFilter.hh:32]: (warning) Member variable 'EnergyPerResidueFilter::whole_protein_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/EvaluatedTrialMover.cc:66]: (performance) Variable 'evaluator_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_filters/ExpiryFilter.cc:40]: (performance) Variable 'start_time_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_filters/LeastNativeLike9merFilter.cc:65]: (warning) Member variable 'LeastNativeLike9merFilter::ignore_terminal_res_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/LeastNativeLike9merFilter.cc:65]: (warning) Member variable 'LeastNativeLike9merFilter::only_helices_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/LeastNativeLike9merFilter.cc:65]: (warning) Member variable 'LeastNativeLike9merFilter::SSHashedFragmentStore_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/MPSpanAngleFilter.cc:102]: (style) Variable 'temp_status' is assigned a value that is never used. [unreadVariable]
[protocols/simple_filters/MPSpanAngleFilter.cc:134]: (style) Variable 'temp_status' is assigned a value that is never used. [unreadVariable]
[protocols/simple_filters/MutationsFilter.cc:43]: (warning) Member variable 'MutationsFilter::write2pdb_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/NMerSVMEnergyFilter.cc:60]: (warning) Member variable 'NMerSVMEnergyFilter::count_eps_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/NMerSVMEnergyFilter.cc:60]: (warning) Member variable 'NMerSVMEnergyFilter::dump_table_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/NMerSVMEnergyFilter.cc:60]: (warning) Member variable 'NMerSVMEnergyFilter::rank_as_score_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/PalesEvaluator.cc:49]: (performance) Function parameter 'pales_rdc_file' should be passed by const reference. [passedByValue]
[protocols/simple_filters/PalesEvaluator.cc:49]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[protocols/simple_filters/PDDFScoreFilter.cc:45]: (performance) Variable 'score_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_filters/PDDFScoreFilter.cc:46]: (performance) Variable 'cutoff_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_filters/RepeatParameterFilter.cc:217]: (style) Variable 'scalar' is assigned a value that is never used. [unreadVariable]
[protocols/simple_filters/RepeatParameterFilter.cc:51]: (warning) Member variable 'RepeatParameterFilter::filter_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/ResidueDepthFilter.cc:706]: (performance) Function parameter 'infile' should be passed by const reference. [passedByValue]
[protocols/simple_filters/ResidueDepthFilter.cc:788]: (performance) Function parameter 'infile' should be passed by const reference. [passedByValue]
[protocols/simple_filters/ResidueIEFilter.cc:40]: (warning) Member variable 'ResidueIEFilter::use_resE_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/ResidueLipophilicityFilter.hh:40]: (warning) Member variable 'ResidueLipophilicityFilter::print_splines_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/ResidueSetChainEnergyFilter.cc:57]: (warning) Member variable 'ResidueSetChainEnergyFilter::score_type_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/ResiduesInInterfaceFilter.hh:33]: (performance) Variable 'residues_in_interface_threshold_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_filters/ResiduesInInterfaceFilter.hh:34]: (performance) Variable 'rb_jump_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_filters/ResiduesInInterfaceFilter.hh:46]: (performance) Variable 'residues_in_interface_threshold_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_filters/ResiduesInInterfaceFilter.hh:47]: (performance) Variable 'rb_jump_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_filters/RmsdEvaluator.cc:275]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[protocols/simple_filters/RmsdEvaluator.cc:287]: (performance) Function parameter 'loops' should be passed by const reference. [passedByValue]
[protocols/simple_filters/RmsdEvaluator.cc:287]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[protocols/simple_filters/RmsdEvaluator.cc:295]: (performance) Function parameter 'core' should be passed by const reference. [passedByValue]
[protocols/simple_filters/RmsdEvaluator.cc:295]: (performance) Function parameter 'loops' should be passed by const reference. [passedByValue]
[protocols/simple_filters/RmsdEvaluator.cc:295]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[protocols/simple_filters/RmsdEvaluator.cc:64]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[protocols/simple_filters/RmsdEvaluator.cc:76]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[protocols/simple_filters/SAXSScoreFilter.cc:68]: (performance) Variable 'cutoff_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_filters/ScoreEvaluator.cc:108]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[protocols/simple_filters/ScoreEvaluator.cc:117]: (performance) Variable 'nres_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_filters/ScoreEvaluator.cc:63]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[protocols/simple_filters/SecretionPredictionFilter.cc:55]: (performance) Variable 'window_size_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_filters/SecretionPredictionFilter.cc:56]: (performance) Variable 'dG_ins_threshold_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_filters/SecretionPredictionFilter.cc:57]: (performance) Variable 'keep_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_filters/SequenceDistanceFilter.cc:103]: (error) When i==pose_sequence.size(), pose_sequence[i] is out of bounds. [stlOutOfBounds]
[protocols/simple_filters/ShapeComplementarityFilter.cc:59]: (warning) Member variable 'ShapeComplementarityFilter::write_d_median_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/SheetFilter.cc:1032]: (style) Parameter 'nsht' can be declared with const [constParameter]
[protocols/simple_filters/SheetFilter.cc:1398]: (style) Variable 'stpppt(cnt)' is assigned a value that is never used. [unreadVariable]
[protocols/simple_filters/SheetFilter.hh:48]: (warning) Member variable 'SheetFilter::handedness_score_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/SidechainRmsdFilter.cc:50]: (warning) Member variable 'SidechainRmsdFilter::include_backbone_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/SidechainRmsdFilter.cc:52]: (warning) Member variable 'SidechainRmsdFilter::include_backbone_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/SimpleHbondsToAtomFilter.cc:82]: (performance) Function parameter 'target_atom_name' should be passed by const reference. [passedByValue]
[protocols/simple_filters/SimpleMetricFilter.cc:170]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[protocols/simple_filters/SimpleMetricFilter.cc:170]: (performance) Function parameter 'suffix' should be passed by const reference. [passedByValue]
[protocols/simple_filters/SpanTopologyMatchPoseFilter.cc:125]: (performance) Function parameter 'ts_actual' should be passed by const reference. [passedByValue]
[protocols/simple_filters/SpanTopologyMatchPoseFilter.cc:125]: (performance) Function parameter 'ts_span' should be passed by const reference. [passedByValue]
[protocols/simple_filters/SSElementLengthFilter.cc:118]: (style) Variable 'endSS' is assigned a value that is never used. [unreadVariable]
[protocols/simple_filters/SSElementLengthFilter.cc:77]: (warning) Member variable 'SSElementLengthFilter::report_avg_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/SSElementLengthFilter.cc:77]: (warning) Member variable 'SSElementLengthFilter::report_longest_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/SSElementLengthFilter.cc:77]: (warning) Member variable 'SSElementLengthFilter::report_shortest_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/SSElementMotifContactFilter.cc:116]: (style) Variable 'endSS' is assigned a value that is never used. [unreadVariable]
[protocols/simple_filters/SSElementMotifContactFilter.cc:72]: (warning) Member variable 'SSElementMotifContactFilter::mman_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/SSElementMotifContactFilter.cc:72]: (warning) Member variable 'SSElementMotifContactFilter::only_c_term_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/SSElementMotifContactFilter.cc:72]: (warning) Member variable 'SSElementMotifContactFilter::only_n_term_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/SSElementMotifContactFilter.cc:72]: (warning) Member variable 'SSElementMotifContactFilter::report_avg_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/SSElementMotifContactFilter.cc:72]: (warning) Member variable 'SSElementMotifContactFilter::use_atomic_contact_filter_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/SSMotifFinderFilter.hh:64]: (performance) Function parameter 's' should be passed by const reference. [passedByValue]
[protocols/simple_filters/SSMotifFinderFilter.hh:66]: (performance) Function parameter 's' should be passed by const reference. [passedByValue]
[protocols/simple_filters/SymmetricMotifFilter.cc:152]: (performance) Variable 'ref_motifs_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_filters/SymmetricMotifFilter.cc:90]: (style) Parameter 'Q' can be declared with const [constParameter]
[protocols/simple_filters/SymmetricMotifFilter.hh:56]: (performance) Function parameter 'symm_type_in' should be passed by const reference. [passedByValue]
[protocols/simple_filters/TaskAwareScoreTypeFilter.cc:196]: (style) Variable 'tie' is assigned a value that is never used. [unreadVariable]
[protocols/simple_filters/TaskAwareScoreTypeFilter.cc:205]: (style) Variable 'sym_aware_jump_id' is assigned a value that is never used. [unreadVariable]
[protocols/simple_filters/TaskAwareScoreTypeFilter.cc:264]: (style) Variable 'tie' is assigned a value that is never used. [unreadVariable]
[protocols/simple_filters/TaskAwareScoreTypeFilter.cc:57]: (warning) Member variable 'TaskAwareScoreTypeFilter::individual_hbonds_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/TaskAwareScoreTypeFilter.cc:57]: (warning) Member variable 'TaskAwareScoreTypeFilter::score_type_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_filters/TaskAwareScoreTypeFilter.cc:57]: (warning) Member variable 'TaskAwareScoreTypeFilter::unbound_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_moves/AddChainMover.cc:55]: (performance) Variable 'swap_chain_number_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/AddResidueLabelMover.cc:56]: (performance) Function parameter 'label' should be passed by const reference. [passedByValue]
[protocols/simple_moves/asym_fold_and_dock/AsymFoldandDockRbTrialMover.cc:53]: (performance) Variable 'scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/asym_fold_and_dock/AsymFoldandDockRbTrialMover.cc:71]: (warning) Member variable 'AsymFoldandDockRbTrialMover::mc_filter_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_moves/BackboneMover.cc:379]: (performance) Function parameter 'tag_name' should be passed by const reference. [passedByValue]
[protocols/simple_moves/BBConRotMover.cc:508]: (style) Variable 'stub' is assigned a value that is never used. [unreadVariable]
[protocols/simple_moves/BBConRotMover.cc:597]: (style) Parameter 'r0' can be declared with const [constParameter]
[protocols/simple_moves/BBConRotMover.cc:598]: (style) Parameter 'r1' can be declared with const [constParameter]
[protocols/simple_moves/BBConRotMover.cc:599]: (style) Parameter 'r2' can be declared with const [constParameter]
[protocols/simple_moves/BBConRotMover.cc:601]: (style) Parameter 'r4' can be declared with const [constParameter]
[protocols/simple_moves/BBConRotMover.cc:602]: (style) Parameter 'r5' can be declared with const [constParameter]
[protocols/simple_moves/BBConRotMover.cc:603]: (style) Parameter 'r6' can be declared with const [constParameter]
[protocols/simple_moves/BBGaussianMover.hh:199] -> [protocols/simple_moves/BBConRotMover.hh:110]: (warning) The class 'BBConRotMover' defines member variable with name 'factorA_' also defined in its parent class 'BBGaussianMover'. [duplInheritedMember]
[protocols/simple_moves/BBGaussianMover.hh:200] -> [protocols/simple_moves/BBConRotMover.hh:111]: (warning) The class 'BBConRotMover' defines member variable with name 'factorB_' also defined in its parent class 'BBGaussianMover'. [duplInheritedMember]
[protocols/simple_moves/chiral/ChiralMover.cc:150]: (style) Variable 'chiral_neighbor_ids' is assigned a value that is never used. [unreadVariable]
[protocols/simple_moves/chiral/ChiralMover.cc:83]: (style) Variable 'variant_types' is assigned a value that is never used. [unreadVariable]
[protocols/simple_moves/CombinePoseMover.hh:65]: (performance) Function parameter 'value' should be passed by const reference. [passedByValue]
[protocols/simple_moves/CombinePoseMover.hh:74]: (performance) Function parameter 'v' should be passed by const reference. [passedByValue]
[protocols/simple_moves/ConcatenatePosesMover.cc:290]: (performance) Function parameter 'new_component_file' should be passed by const reference. [passedByValue]
[protocols/simple_moves/ConcatenatePosesMover.cc:71]: (performance) Variable 'component_file_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/CoupledMover.cc:214] -> [protocols/simple_moves/CoupledMover.cc:219]: (style) Condition '!loop_is_protein' is always true [knownConditionTrueFalse]
[protocols/simple_moves/CoupledMover.cc:258]: (style) Condition 'linked_positions[i]!=resnum_' is always true [knownConditionTrueFalse]
[protocols/simple_moves/DisulfideInsertionMover.cc:81]: (performance) Variable 'peptide_chain_num_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/DisulfideInsertionMover.cc:82]: (performance) Variable 'n_cyd_seqpos_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/DisulfideInsertionMover.cc:83]: (performance) Variable 'c_cyd_seqpos_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/DisulfideInsertionMover.cc:84]: (performance) Variable 'max_dslf_pot_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/DisulfideInsertionMover.cc:85]: (performance) Variable 'max_dslf_energy_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/DisulfideInsertionMover.cc:86]: (performance) Variable 'min_dist_multiplier_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/DisulfideInsertionMover.cc:87]: (performance) Variable 'max_dist_multiplier_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/DisulfideInsertionMover.cc:88]: (performance) Variable 'constraint_weight_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/ExplicitWaterMover.hh:107]: (performance) Variable 'bindis_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/ExplicitWaterMover.hh:111]: (performance) Variable 'bindis_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/ExplicitWaterMover.hh:216]: (performance) Function parameter 'val' should be passed by const reference. [passedByValue]
[protocols/simple_moves/ExplicitWaterMover.hh:49]: (performance) Function parameter 'aa' should be passed by const reference. [passedByValue]
[protocols/simple_moves/ExplicitWaterMover.hh:49]: (performance) Function parameter 'aatm' should be passed by const reference. [passedByValue]
[protocols/simple_moves/ExplicitWaterMover.hh:49]: (performance) Function parameter 'abase1' should be passed by const reference. [passedByValue]
[protocols/simple_moves/ExplicitWaterMover.hh:49]: (performance) Function parameter 'abase2' should be passed by const reference. [passedByValue]
[protocols/simple_moves/GunnCost.cc:199]: (style) Expression 'log(1 + x)' can be replaced by 'log1p(x)' to avoid loss of precision. [unpreciseMathCall]
[protocols/simple_moves/GunnCost.cc:200]: (style) Expression 'log(1 + x)' can be replaced by 'log1p(x)' to avoid loss of precision. [unpreciseMathCall]
[protocols/simple_moves/GunnCost.cc:201]: (style) Expression 'log(1 + x)' can be replaced by 'log1p(x)' to avoid loss of precision. [unpreciseMathCall]
[protocols/simple_moves/GunnCost.hh:52]: (performance) Variable 'q1' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/GunnCost.hh:53]: (performance) Variable 'q2' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/GunnCost.hh:54]: (performance) Variable 'q3' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/GunnCost.hh:55]: (performance) Variable 'q4' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/GunnCost.hh:56]: (performance) Variable 'q5' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/GunnCost.hh:57]: (performance) Variable 'q6' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/PeriodicBoxMover.cc:120]: (performance) Variable 'nmol_side_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/PeriodicBoxMover.cc:121]: (performance) Variable 'initial_density_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/PeriodicBoxMover.cc:124]: (performance) Variable 'temp_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/PeriodicBoxMover.cc:127]: (performance) Variable 'vol_step_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/PeriodicBoxMover.cc:128]: (performance) Variable 'trans_step_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/PeriodicBoxMover.cc:129]: (performance) Variable 'rot_step_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/PeriodicBoxMover.cc:130]: (performance) Variable 'tor_step_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/PeriodicBoxMover.cc:131]: (performance) Variable 'probability_rigid_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/PeriodicBoxMover.cc:132]: (performance) Variable 'resize_vol_every_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/PeriodicBoxMover.cc:133]: (performance) Variable 'nsteps_equilibrate_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/PeriodicBoxMover.cc:134]: (performance) Variable 'nsteps_sim_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/PeriodicBoxMover.cc:135]: (performance) Variable 'istart_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/PeriodicBoxMover.cc:137]: (performance) Variable 'dump_every_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/PeriodicBoxMover.cc:138]: (performance) Variable 'report_every_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/PeriodicBoxMover.cc:139]: (performance) Variable 'report_silent_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/PeriodicBoxMover.cc:140]: (performance) Variable 'report_scorefile_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/PeriodicBoxMover.cc:142]: (performance) Variable 'origin_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/PeriodicBoxMover.cc:144]: (performance) Variable 'P0_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/PeriodicBoxMover.cc:145]: (performance) Variable 'rg_atom1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/PeriodicBoxMover.cc:146]: (performance) Variable 'rg_atom2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/PeriodicBoxMover.cc:148]: (performance) Variable 'central_molecule_pdb_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/PeriodicBoxMover.cc:149]: (performance) Variable 'central_resno_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/PeriodicBoxMover.cc:151]: (performance) Variable 'thermodynamic_data_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/RandomOmegaFlipMover.cc:106]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/simple_moves/RandomTorsionMover.cc:125]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/simple_moves/ReportEffectivePKA.hh:34]: (performance) Function parameter 'resname' should be passed by const reference. [passedByValue]
[protocols/simple_moves/ReportEffectivePKA.hh:38]: (performance) Variable 'resname_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/ReportEffectivePKA.hh:39]: (performance) Variable 'ref_pKa_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/ReportEffectivePKA.hh:40]: (performance) Variable 'acid_base_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/ScoreMover.hh:84]: (performance) Function parameter 'scorefile' should be passed by const reference. [passedByValue]
[protocols/simple_moves/SetTorsion.cc:372]: (performance) Function parameter 'tag_name' should be passed by const reference. [passedByValue]
[protocols/simple_moves/SetupMetalsMover.cc:295]: (performance) Function parameter 'input' should be passed by const reference. [passedByValue]
[protocols/simple_moves/SetupMetalsMover.cc:315]: (performance) Function parameter 'input' should be passed by const reference. [passedByValue]
[protocols/simple_moves/SetupMetalsMover.cc:44]: (performance) Variable 'metals_detection_LJ_multiplier_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/SetupMetalsMover.cc:45]: (performance) Variable 'metals_distance_constraint_multiplier_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/SetupMetalsMover.cc:46]: (performance) Variable 'metals_angle_constraint_multiplier_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/SetupMetalsMover.cc:47]: (performance) Variable 'metal_selector_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/SetupMetalsMover.cc:48]: (performance) Variable 'metal_resnums_string_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/ShakeStructureMover.cc:559]: (style) Parameter 'p' can be declared with const [constParameter]
[protocols/simple_moves/sidechain_moves/PerturbRotamerSidechainMover.cc:234]: (style) Variable 'norm_prob' is assigned a value that is never used. [unreadVariable]
[protocols/simple_moves/sidechain_moves/SidechainMCMover.cc:226]: (style) Condition 'DEBUG' is always false [knownConditionTrueFalse]
[protocols/simple_moves/sidechain_moves/SidechainMCMover.cc:249]: (style) Condition 'DEBUG' is always false [knownConditionTrueFalse]
[protocols/simple_moves/sidechain_moves/SidechainMoverBase.cc:253]: (style) Variable 'previous_residue' is assigned a value that is never used. [unreadVariable]
[protocols/simple_moves/sidechain_moves/SidechainMoverBase.cc:76]: (warning) Member variable 'SidechainMoverBase::preserve_detailed_balance_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_moves/sidechain_moves/SidechainMoverBase.cc:83]: (warning) Member variable 'SidechainMoverBase::preserve_detailed_balance_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_moves/sidechain_moves/SidechainMover.cc:76]: (warning) Member variable 'SidechainMover::last_mutation_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_moves/sidechain_moves/SidechainMover.cc:76]: (warning) Member variable 'SidechainMover::last_pertrot_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_moves/sidechain_moves/SidechainMover.cc:76]: (warning) Member variable 'SidechainMover::last_uniform_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_moves/sidechain_moves/SidechainMover.cc:76]: (warning) Member variable 'SidechainMover::last_withinrot_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_moves/sidechain_moves/SidechainMover.cc:94]: (warning) Member variable 'SidechainMover::last_mutation_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_moves/sidechain_moves/SidechainMover.cc:94]: (warning) Member variable 'SidechainMover::last_pertrot_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_moves/sidechain_moves/SidechainMover.cc:94]: (warning) Member variable 'SidechainMover::last_uniform_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_moves/sidechain_moves/SidechainMover.cc:94]: (warning) Member variable 'SidechainMover::last_withinrot_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_moves/SimpleThreadingMover.cc:121]: (performance) Function parameter 'thread_sequence' should be passed by const reference. [passedByValue]
[protocols/simple_moves/SimpleThreadingMover.cc:52]: (performance) Function parameter 'thread_sequence' should be passed by const reference. [passedByValue]
[protocols/simple_moves/SmoothFragmentMover.cc:71]: (performance) Function parameter 'move_type' should be passed by const reference. [passedByValue]
[protocols/simple_moves/StructProfileMover.cc:129]: (performance) Variable 'cend' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/StructProfileMover.cc:130]: (performance) Variable 'rmsd' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/StructProfileMover.cc:131]: (performance) Variable 'aa' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/StructProfileMover.cc:85]: (warning) Member variable 'StructProfileMover::add_csts_to_pose_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_moves/StructProfileMover.cc:85]: (warning) Member variable 'StructProfileMover::eliminate_background_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_moves/StructProfileMover.cc:85]: (warning) Member variable 'StructProfileMover::ignore_terminal_res_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_moves/StructProfileMover.cc:85]: (warning) Member variable 'StructProfileMover::only_loops_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_moves/StructProfileMover.cc:85]: (warning) Member variable 'StructProfileMover::outputProfile_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_moves/StructProfileMover.cc:85]: (warning) Member variable 'StructProfileMover::SSHashedFragmentStore_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_moves/StructProfileMover.cc:86]: (performance) Variable 'aa_order_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/StructProfileMover.cc:92]: (performance) Variable 'aa_order_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_moves/SuperimposeMover.cc:59]: (warning) Member variable 'SuperimposeMover::CA_only_' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_moves/SymmetricFragmentMover.hh:113]: (performance) Function parameter 'type' should be passed by const reference. [passedByValue]
[protocols/simple_moves/SymmetricFragmentMover.hh:77]: (performance) Function parameter 'type' should be passed by const reference. [passedByValue]
[protocols/simple_moves/TailsScoreMover.cc:199] -> [protocols/simple_moves/TailsScoreMover.cc:198]: (style) Same expression used in consecutive assignments of 'number_of_ltail_steps' and 'number_of_rtail_steps'. [duplicateAssignExpression]
[protocols/simple_moves/TailsScoreMover.hh:38]: (warning) Member variable 'TailsScoreMover::m_done_all' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_moves/TailsScoreMover.hh:44]: (warning) Member variable 'TailsScoreMover::m_done_all' is not initialized in the constructor. [uninitMemberVar]
[protocols/simple_pose_metric_calculators/BuriedUnsatisfiedPolarsCalculator.cc:490]: (performance) Function parameter 'atom_type' should be passed by const reference. [passedByValue]
[protocols/simple_pose_metric_calculators/NumberHBondsCalculator.hh:66]: (performance) Function parameter 'selection' should be passed by const reference. [passedByValue]
[protocols/simple_task_operations/InterfaceTaskOperation.cc:44]: (performance) Variable 'movable_jumps_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_task_operations/InterfaceTaskOperation.cc:52]: (performance) Variable 'movable_jumps_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_task_operations/InterfaceTaskOperation.cc:53]: (performance) Variable 'movable_chains_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_task_operations/RestrictToInterface.hh:134]: (performance) Variable 'loop_residues_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_task_operations/RestrictToInterface.hh:140]: (performance) Variable 'loop_residues_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/simple_task_operations/RestrictToLoops.cc:95]: (style) Parameter 'attributes' can be declared with const [constParameter]
[protocols/splice/RBInMover.hh:69]: (performance) Function parameter 's' should be passed by const reference. [passedByValue]
[protocols/splice/RotLibOut.cc:70]: (warning) Member variable 'RotLibOut::dump_pdb_' is not initialized in the constructor. [uninitMemberVar]
[protocols/splice/RotLibOut.cc:83]: (style) Parameter 'hit_pose' can be declared with const [constParameter]
[protocols/splice/RotLibOut.cc:83]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/splice/RotLibOut.hh:45]: (performance) Function parameter 's' should be passed by const reference. [passedByValue]
[protocols/splice/RotLibOut.hh:47]: (performance) Function parameter 's' should be passed by const reference. [passedByValue]
[protocols/splice/SampleRotamersFromPDB.cc:103]: (performance) Function parameter 'res' should be passed by const reference. [passedByValue]
[protocols/splice/SampleRotamersFromPDB.cc:110]: (performance) Function parameter 'existing_res' should be passed by const reference. [passedByValue]
[protocols/splice/SampleRotamersFromPDB.cc:110]: (performance) Function parameter 'new_res' should be passed by const reference. [passedByValue]
[protocols/splice/SampleRotamersFromPDB.cc:301] -> [protocols/splice/SampleRotamersFromPDB.cc:304]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/splice/SampleRotamersFromPDB.cc:304] -> [protocols/splice/SampleRotamersFromPDB.cc:307]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/splice/SampleRotamersFromPDB.cc:307] -> [protocols/splice/SampleRotamersFromPDB.cc:310]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/splice/SampleRotamersFromPDB.cc:310] -> [protocols/splice/SampleRotamersFromPDB.cc:313]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/splice/SampleRotamersFromPDB.cc:519]: (warning) Member variable 'SampleRotamersFromPDB::add_rotamer_' is not initialized in the constructor. [uninitMemberVar]
[protocols/splice/SampleRotamersFromPDB.cc:519]: (warning) Member variable 'SampleRotamersFromPDB::ccd_' is not initialized in the constructor. [uninitMemberVar]
[protocols/splice/SampleRotamersFromPDB.cc:519]: (warning) Member variable 'SampleRotamersFromPDB::debug_' is not initialized in the constructor. [uninitMemberVar]
[protocols/splice/Splice.cc:1066] -> [protocols/splice/Splice.cc:1071]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/splice/Splice.cc:1208] -> [protocols/splice/Splice.cc:1565]: (style) Local variable 'dao' shadows outer variable [shadowVariable]
[protocols/splice/Splice.cc:1279] -> [protocols/splice/Splice.cc:1610]: (style) Local variable 'ptask' shadows outer variable [shadowVariable]
[protocols/splice/Splice.cc:1280] -> [protocols/splice/Splice.cc:1611]: (style) Local variable 'prm' shadows outer variable [shadowVariable]
[protocols/splice/Splice.cc:1548] -> [protocols/splice/Splice.cc:1549]: (style) Variable 'tf' is reassigned a value before the old one has been used. [redundantAssignment]
[protocols/splice/Splice.cc:172]: (warning) Member variable 'Splice::CG_const_' is not initialized in the constructor. [uninitMemberVar]
[protocols/splice/Splice.cc:172]: (warning) Member variable 'Splice::debug_' is not initialized in the constructor. [uninitMemberVar]
[protocols/splice/Splice.cc:172]: (warning) Member variable 'Splice::enzdes_' is not initialized in the constructor. [uninitMemberVar]
[protocols/splice/Splice.cc:172]: (warning) Member variable 'Splice::ignore_chain_break_' is not initialized in the constructor. [uninitMemberVar]
[protocols/splice/Splice.cc:172]: (warning) Member variable 'Splice::min_seg_' is not initialized in the constructor. [uninitMemberVar]
[protocols/splice/Splice.cc:181]: (performance) Variable 'profile_weight_away_from_interface_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/splice/Splice.cc:183]: (performance) Variable 'design_shell_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/splice/Splice.cc:184]: (performance) Variable 'repack_shell_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/splice/Splice.cc:2151] -> [protocols/splice/Splice.cc:2158]: (style) Local variable 'delta' shadows outer variable [shadowVariable]
[protocols/splice/Splice.cc:2177]: (warning) Return value of function std::unique() is not used. [ignoredReturnValue]
[protocols/splice/Splice.cc:2177]: (warning) Return value of std::unique() ignored. Elements remain in container. [uselessCallsRemove]
[protocols/splice/Splice.cc:521]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[protocols/splice/Splice.cc:863] -> [protocols/splice/Splice.cc:865]: (warning) Opposite inner 'if' condition leads to a dead code block. [oppositeInnerCondition]
[protocols/splice/Splice.hh:125]: (performance) Function parameter 'dofsPDBname' should be passed by const reference. [passedByValue]
[protocols/splice/SpliceInAntibody.cc:237] -> [protocols/splice/SpliceInAntibody.cc:242]: (style) Local variable 'delta' shadows outer variable [shadowVariable]
[protocols/splice/SpliceInAntibody.cc:251]: (warning) Return value of function std::unique() is not used. [ignoredReturnValue]
[protocols/splice/SpliceInAntibody.cc:251]: (warning) Return value of std::unique() ignored. Elements remain in container. [uselessCallsRemove]
[protocols/splice/SpliceIn.cc:277]: (style) Variable 'ft' is assigned a value that is never used. [unreadVariable]
[protocols/splice/SpliceIn.cc:321] -> [protocols/splice/SpliceIn.cc:326]: (style) Local variable 'delta' shadows outer variable [shadowVariable]
[protocols/splice/SpliceIn.cc:335]: (warning) Return value of function std::unique() is not used. [ignoredReturnValue]
[protocols/splice/SpliceIn.cc:335]: (warning) Return value of std::unique() ignored. Elements remain in container. [uselessCallsRemove]
[protocols/splice/SpliceIn.cc:416]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[protocols/splice/SpliceIn.cc:529]: (style) Unused variable: line_tail [unusedVariable]
[protocols/splice/SpliceIn.cc:734]: (style) Variable 'packable_residues' is assigned a value that is never used. [unreadVariable]
[protocols/splice/SpliceInTail.cc:290]: (style) Variable 'ft' is assigned a value that is never used. [unreadVariable]
[protocols/splice/SpliceInTail.cc:352] -> [protocols/splice/SpliceInTail.cc:357]: (style) Local variable 'delta' shadows outer variable [shadowVariable]
[protocols/splice/SpliceInTail.cc:366]: (warning) Return value of function std::unique() is not used. [ignoredReturnValue]
[protocols/splice/SpliceInTail.cc:366]: (warning) Return value of std::unique() ignored. Elements remain in container. [uselessCallsRemove]
[protocols/splice/SpliceManager.cc:179]: (style) Variable 'H3_pdb_source' is assigned a value that is never used. [unreadVariable]
[protocols/splice/SpliceManager.cc:350]: (style) Unused variable: pssm_AA [unusedVariable]
[protocols/splice/SpliceManager.cc:65]: (warning) Member variable 'SpliceManager::adjust_stem_positions_by_template_' is not initialized in the constructor. [uninitMemberVar]
[protocols/splice/SpliceManager.cc:65]: (warning) Member variable 'SpliceManager::debug_' is not initialized in the constructor. [uninitMemberVar]
[protocols/splice/SpliceManager.cc:65]: (warning) Member variable 'SpliceManager::thread_original_sequence_' is not initialized in the constructor. [uninitMemberVar]
[protocols/splice/SpliceOutAntibody.cc:145]: (warning) Member variable 'SpliceOutAntibody::call_mover_tmp' is not initialized in the constructor. [uninitMemberVar]
[protocols/splice/SpliceOut.cc:135]: (warning) Member variable 'SpliceOut::call_mover_tail_' is not initialized in the constructor. [uninitMemberVar]
[protocols/splice/SpliceSegment.cc:222]: (performance) Function parameter 'segment' should be passed by const reference. [passedByValue]
[protocols/splice/SpliceSegment.cc:225] -> [protocols/splice/SpliceSegment.cc:237]: (style) Local variable 'data' shadows outer variable [shadowVariable]
[protocols/splice/TailSegmentMover.cc:94]: (warning) Member variable 'TailSegmentMover::init_for_input_yet_' is not initialized in the constructor. [uninitMemberVar]
[protocols/splice/util.cc:163]: (style) Variable 'packable_residues' is assigned a value that is never used. [unreadVariable]
[protocols/splice/util.cc:240]: (performance) Function parameter 'dofs' should be passed by const reference. [passedByValue]
[protocols/splice/util.cc:240]: (performance) Function parameter 'tail_dofs' should be passed by const reference. [passedByValue]
[protocols/splice/util.cc:342] -> [protocols/splice/util.cc:359]: (style) Local variable 'chain1_interface' shadows outer variable [shadowVariable]
[protocols/splice/util.cc:342] -> [protocols/splice/util.cc:371]: (style) Local variable 'chain1_interface' shadows outer variable [shadowVariable]
[protocols/splice/util.cc:440]: (style) Variable 'designable_residues' is assigned a value that is never used. [unreadVariable]
[protocols/splice/util.cc:51]: (performance) Function parameter 'protein_family' should be passed by const reference. [passedByValue]
[protocols/splice/util.cc:51]: (performance) Function parameter 'segment' should be passed by const reference. [passedByValue]
[protocols/splice/util.cc:51]: (performance) Function parameter 'tail_segment' should be passed by const reference. [passedByValue]
[protocols/splice/util.hh:37] -> [protocols/splice/Splice.cc:407]: (style) Local variable 'nearest_to_entry_stop_on_pose' shadows outer function [shadowFunction]
[protocols/splice/util.hh:37] -> [protocols/splice/SpliceIn.cc:377]: (style) Local variable 'nearest_to_entry_stop_on_pose' shadows outer function [shadowFunction]
[protocols/splice/util.hh:37] -> [protocols/splice/SpliceInTail.cc:410]: (style) Local variable 'nearest_to_entry_stop_on_pose' shadows outer function [shadowFunction]
[protocols/stepwise/legacy/modeler/protein/StepWiseProteinMinimizer.cc:134]: (style) Variable 'mm' is assigned a value that is never used. [unreadVariable]
[protocols/stepwise/legacy/modeler/protein/StepWiseProteinPoseSetup.cc:1313]: (style) Parameter 'full_to_sub' can be declared with const [constParameter]
[protocols/stepwise/legacy/modeler/protein/StepWiseProteinPoseSetup.cc:1403]: (style) Variable 'pose_copy' is assigned a value that is never used. [unreadVariable]
[protocols/stepwise/legacy/modeler/protein/StepWiseProteinPoseSetup.cc:1602]: (style) Parameter 'rsd_set' can be declared with const [constParameter]
[protocols/stepwise/legacy/modeler/protein/StepWiseProteinPoseSetup.cc:463]: (style) Variable 'full_to_sub' can be declared with const [constVariable]
[protocols/stepwise/legacy/modeler/protein/StepWiseProteinPoseSetup.cc:785] -> [protocols/stepwise/legacy/modeler/protein/StepWiseProteinPoseSetup.cc:786]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/stepwise/legacy/modeler/protein/util.cc:141]: (style) Variable 'pose_for_superpose' is assigned a value that is never used. [unreadVariable]
[protocols/stepwise/legacy/modeler/rna/RNA_AnalyticLoopCloser.cc:344] -> [protocols/stepwise/legacy/modeler/rna/RNA_AnalyticLoopCloser.cc:353]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/stepwise/legacy/modeler/rna/StepWiseRNA_Clusterer.cc:1430] -> [protocols/stepwise/legacy/modeler/rna/StepWiseRNA_Clusterer.cc:1470]: (style) Local variable 'has_shift_score' shadows outer variable [shadowVariable]
[protocols/stepwise/legacy/modeler/rna/StepWiseRNA_Clusterer.cc:1617]: (style) Parameter 'working_parameters' can be declared with const [constParameter]
[protocols/stepwise/legacy/modeler/rna/StepWiseRNA_Clusterer.cc:657]: (style) Condition 'filter_verbose' is always true [knownConditionTrueFalse]
[protocols/stepwise/legacy/modeler/rna/StepWiseRNA_Clusterer.cc:682]: (style) Condition 'filter_verbose' is always true [knownConditionTrueFalse]
[protocols/stepwise/legacy/modeler/rna/StepWiseRNA_Clusterer.cc:698]: (style) Condition 'filter_verbose' is always true [knownConditionTrueFalse]
[protocols/stepwise/legacy/modeler/rna/StepWiseRNA_Clusterer.cc:714]: (style) Condition 'filter_verbose' is always true [knownConditionTrueFalse]
[protocols/stepwise/legacy/modeler/rna/StepWiseRNA_Clusterer.cc:730]: (style) Condition 'filter_verbose' is always true [knownConditionTrueFalse]
[protocols/stepwise/legacy/modeler/rna/StepWiseRNA_Clusterer.cc:737]: (style) Condition 'filter_verbose' is always true [knownConditionTrueFalse]
[protocols/stepwise/legacy/modeler/rna/StepWiseRNA_PoseSelection.cc:75]: (style) Parameter 'current_pose' can be declared with const [constParameter]
[protocols/stepwise/legacy/modeler/rna/StepWiseRNA_PoseSelection.hh:84]: (style) Parameter 'setting' can be declared with const [constParameter]
[protocols/stepwise/legacy/modeler/rna/StepWiseRNA_PoseSetup.cc:235]: (style) Variable 'dummy_pose' is assigned a value that is never used. [unreadVariable]
[protocols/stepwise/legacy/modeler/rna/StepWiseRNA_PoseSetup.cc:258] -> [protocols/stepwise/legacy/modeler/rna/StepWiseRNA_PoseSetup.cc:259]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/stepwise/legacy/modeler/rna/StepWiseRNA_PoseSetup.cc:796]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/stepwise/legacy/modeler/rna/StepWiseRNA_WorkingParametersSetup.cc:293]: (style) Variable 'full_to_sub' can be declared with const [constVariable]
[protocols/stepwise/legacy/modeler/rna/StepWiseRNA_WorkingParametersSetup.cc:952]: (style) Variable 'full_to_sub' can be declared with const [constVariable]
[protocols/stepwise/legacy/modeler/rna/util.cc:168]: (performance) Function parameter 'pose_name' should be passed by const reference. [passedByValue]
[protocols/stepwise/modeler/align/StepWiseClusterer.cc:233] -> [protocols/stepwise/modeler/align/StepWiseClusterer.cc:239]: (style) Expression is always true because 'else if' condition is opposite to previous condition at line 233. [multiCondition]
[protocols/stepwise/modeler/packer/StepWisePacker.cc:136]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/stepwise/modeler/polar_hydrogens/PolarHydrogenPacker.cc:79]: (warning) Member variable 'PolarHydrogenPacker::allow_virtual_o2prime_hydrogens_' is not initialized in the constructor. [uninitMemberVar]
[protocols/stepwise/modeler/precomputed/PrecomputedLibraryMover.cc:131]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/stepwise/modeler/protein/InputStreamWithResidueInfo.cc:226]: (style) Parameter 'rsd_set' can be declared with const [constParameter]
[protocols/stepwise/modeler/protein/StepWiseProteinBackboneSampler.cc:499] -> [protocols/stepwise/modeler/protein/StepWiseProteinBackboneSampler.cc:505]: (style) Local variable 'j' shadows outer variable [shadowVariable]
[protocols/stepwise/modeler/protein/util.cc:128] -> [protocols/stepwise/modeler/protein/util.cc:152]: (style) Local variable 'bridge_res' shadows outer variable [shadowVariable]
[protocols/stepwise/modeler/protein/util.cc:135] -> [protocols/stepwise/modeler/protein/util.cc:151]: (style) Local variable 'n' shadows outer variable [shadowVariable]
[protocols/stepwise/modeler/rna/checker/RNA_AtrRepChecker.cc:250]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[protocols/stepwise/modeler/rna/checker/RNA_AtrRepChecker.hh:84]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[protocols/stepwise/modeler/rna/checker/RNA_BaseCentroidChecker.cc:223] -> [protocols/stepwise/modeler/rna/checker/RNA_BaseCentroidChecker.cc:224]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/stepwise/modeler/rna/checker/RNA_BaseCentroidChecker.cc:232] -> [protocols/stepwise/modeler/rna/checker/RNA_BaseCentroidChecker.cc:233]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/stepwise/modeler/rna/checker/RNA_ChainClosableGeometryChecker.cc:277]: (style) Variable 'o3p_equiv_atom' is assigned a value that is never used. [unreadVariable]
[protocols/stepwise/modeler/rna/checker/RNA_ChainClosableGeometryChecker.cc:278]: (style) Variable 'c3p_equiv_atom' is assigned a value that is never used. [unreadVariable]
[protocols/stepwise/modeler/rna/checker/RNA_ChainClosableGeometryChecker.cc:279]: (style) Variable 'c4p_equiv_atom' is assigned a value that is never used. [unreadVariable]
[protocols/stepwise/modeler/rna/checker/RNA_ChainClosableGeometryChecker.cc:280]: (style) Variable 'c5p_equiv_atom' is assigned a value that is never used. [unreadVariable]
[protocols/stepwise/modeler/rna/checker/RNA_VDW_BinChecker.cc:1235] -> [protocols/stepwise/modeler/rna/checker/RNA_VDW_BinChecker.cc:1236]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/stepwise/modeler/rna/checker/RNA_VDW_BinChecker.cc:128]: (performance) Variable 'VDW_screen_bin_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/stepwise/modeler/rna/checker/RNA_VDW_BinChecker.cc:1538]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[protocols/stepwise/modeler/rna/checker/RNA_VDW_BinChecker.cc:167]: (performance) Variable 'VDW_screen_bin_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/stepwise/modeler/rna/checker/RNA_VDW_BinChecker.cc:319] -> [protocols/stepwise/modeler/rna/checker/RNA_VDW_BinChecker.cc:323]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/stepwise/modeler/rna/checker/RNA_VDW_BinChecker.cc:506] -> [protocols/stepwise/modeler/rna/checker/RNA_VDW_BinChecker.cc:508]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/stepwise/modeler/rna/checker/RNA_VDW_BinChecker.cc:697] -> [protocols/stepwise/modeler/rna/checker/RNA_VDW_BinChecker.cc:747]: (style) Local variable 'n' shadows outer variable [shadowVariable]
[protocols/stepwise/modeler/rna/checker/RNA_VDW_BinChecker.hh:187]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[protocols/stepwise/modeler/rna/phosphate/PhosphateMover.cc:316]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/stepwise/modeler/rna/StepWiseRNA_CombineLongLoopFilterer.cc:89]: (warning) Member variable 'StepWiseRNA_CombineLongLoopFilterer::parin_favorite_output_' is not initialized in the constructor. [uninitMemberVar]
[protocols/stepwise/modeler/rna/StepWiseRNA_ResidueInfo.cc:119]: (error) When n==full_fasta_sequence.size(), full_fasta_sequence[n] is out of bounds. [stlOutOfBounds]
[protocols/stepwise/modeler/rna/sugar/VirtualSugarJustInTimeInstantiator.cc:102]: (warning) Member variable 'VirtualSugarJustInTimeInstantiator::success_' is not initialized in the constructor. [uninitMemberVar]
[protocols/stepwise/modeler/rna/sugar/VirtualSugarJustInTimeInstantiator.cc:175]: (style) Variable 'pose_save' is assigned a value that is never used. [unreadVariable]
[protocols/stepwise/modeler/rna/sugar/VirtualSugarSampler.cc:221] -> [protocols/stepwise/modeler/rna/sugar/VirtualSugarSampler.cc:237]: (style) Local variable 'chain_closable_geometry_checker' shadows outer variable [shadowVariable]
[protocols/stepwise/modeler/rna/sugar/VirtualSugarSampler.cc:719]: (style) Variable 'reference_stub.M' is assigned a value that is never used. [unreadVariable]
[protocols/stepwise/modeler/rna/sugar/VirtualSugarSampler.cc:783]: (style) The scope of the variable 'current_pose' can be reduced. [variableScope]
[protocols/stepwise/modeler/rna/util.cc:117]: (style) Condition 'verbose' is always true [knownConditionTrueFalse]
[protocols/stepwise/modeler/rna/util.cc:554]: (style) Parameter 'rotamer' can be declared with const [constParameter]
[protocols/stepwise/modeler/rna/util.cc:948] -> [protocols/stepwise/modeler/rna/util.cc:964]: (style) Local variable 'atomno_1' shadows outer variable [shadowVariable]
[protocols/stepwise/modeler/rna/util.cc:949] -> [protocols/stepwise/modeler/rna/util.cc:965]: (style) Local variable 'atomno_2' shadows outer variable [shadowVariable]
[protocols/stepwise/modeler/rna/util.cc:951] -> [protocols/stepwise/modeler/rna/util.cc:967]: (style) Local variable 'rsd_1' shadows outer variable [shadowVariable]
[protocols/stepwise/modeler/rna/util.cc:952] -> [protocols/stepwise/modeler/rna/util.cc:968]: (style) Local variable 'rsd_2' shadows outer variable [shadowVariable]
[protocols/stepwise/modeler/StepWiseConnectionSampler.cc:721] -> [protocols/stepwise/modeler/StepWiseConnectionSampler.cc:725]: (style) Local variable 'n' shadows outer variable [shadowVariable]
[protocols/stepwise/modeler/StepWiseConnectionSampler.cc:890] -> [protocols/stepwise/modeler/StepWiseConnectionSampler.cc:897]: (style) Local variable 'foo' shadows outer variable [shadowVariable]
[protocols/stepwise/modeler/working_parameters/StepWiseBasicWorkingParameters.cc:113]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/stepwise/monte_carlo/mover/DeleteMover.cc:77]: (warning) Member variable 'DeleteMover::minimize_after_delete_' is not initialized in the constructor. [uninitMemberVar]
[protocols/stepwise/monte_carlo/mover/options/StepWiseMoveSelectorOptions.cc:94]: (style) Parameter 'opts' can be declared with const [constParameter]
[protocols/stepwise/monte_carlo/mover/StepWiseMove.cc:152]: (style) Variable 'string_is_ok' is assigned a value that is never used. [unreadVariable]
[protocols/stepwise/monte_carlo/mover/StepWiseMove.cc:215]: (style) Variable 'string_is_ok' is assigned a value that is never used. [unreadVariable]
[protocols/stepwise/monte_carlo/mover/StepWiseMoveSelector.cc:1612]: (style) Variable 'dock_domain_map' is assigned a value that is never used. [unreadVariable]
[protocols/stepwise/monte_carlo/mover/TransientCutpointHandler.cc:113]: (style) Variable 'sample_res_list' is assigned a value that is never used. [unreadVariable]
[protocols/stepwise/monte_carlo/rna/RNA_O2PrimeMover.cc:123]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/stepwise/monte_carlo/StepWiseMonteCarlo.cc:214] -> [protocols/stepwise/monte_carlo/StepWiseMonteCarlo.cc:230]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/stepwise/monte_carlo/submotif/SubMotifLibrary.cc:161] -> [protocols/stepwise/monte_carlo/submotif/SubMotifLibrary.cc:183]: (style) Local variable 'j' shadows outer variable [shadowVariable]
[protocols/stepwise/monte_carlo/util.cc:177]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/stepwise/options/StepWiseBasicOptions.cc:139]: (style) Parameter 'opt' can be declared with const [constParameter]
[protocols/stepwise/screener/SampleApplier.cc:36]: (warning) Member variable 'SampleApplier::apply_residue_alternative_sampler_' is not initialized in the constructor. [uninitMemberVar]
[protocols/struct_fragment/StructFragmentMover.cc:403]: (performance) Function parameter 'large_frag_file' should be passed by const reference. [passedByValue]
[protocols/struct_fragment/StructFragmentMover.cc:403]: (performance) Function parameter 'small_frag_file' should be passed by const reference. [passedByValue]
[protocols/struct_fragment/StructFragmentMover.hh:141]: (performance) Function parameter 'small_frag_file' should be passed by const reference. [passedByValue]
[protocols/struct_fragment/StructFragmentMover.hh:144]: (performance) Function parameter 'large_frag_file' should be passed by const reference. [passedByValue]
[protocols/struct_fragment/StructFragmentMover.hh:147]: (performance) Function parameter 'prefix' should be passed by const reference. [passedByValue]
[protocols/struct_fragment/StructFragmentMover.hh:159]: (performance) Function parameter 'frag_weight_file' should be passed by const reference. [passedByValue]
[protocols/struct_fragment/StructFragmentMover.hh:162]: (performance) Function parameter 'sequence_profile' should be passed by const reference. [passedByValue]
[protocols/struct_fragment/StructFragmentMover.hh:165]: (performance) Function parameter 'vall_file' should be passed by const reference. [passedByValue]
[protocols/surface_docking/CentroidRelaxMover.cc:188]: (style) Variable 'object_to_copy_to.nmoves_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/CentroidRelaxMover.cc:189]: (style) Variable 'object_to_copy_to.kT_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/CentroidRelaxMover.cc:190]: (style) Variable 'object_to_copy_to.score_low_res_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/CentroidRelaxMover.cc:191]: (style) Variable 'object_to_copy_to.small_min_type_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/CentroidRelaxMover.cc:192]: (style) Variable 'object_to_copy_to.shear_min_type_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/CentroidRelaxMover.cc:193]: (style) Variable 'object_to_copy_to.monte_carlo_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/CentroidRelaxMover.cc:194]: (style) Variable 'object_to_copy_to.small_trial_min_mover_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/CentroidRelaxMover.cc:195]: (style) Variable 'object_to_copy_to.shear_trial_min_mover_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/CentroidRelaxMover.cc:196]: (style) Variable 'object_to_copy_to.inner_loop_cycles_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/CentroidRelaxMover.cc:197]: (style) Variable 'object_to_copy_to.outer_loop_cycles_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/FullatomRelaxMover.cc:364]: (error) When ii==sec_struct_.size(), sec_struct_[ii] is out of bounds. [stlOutOfBounds]
[protocols/surface_docking/FullatomRelaxMover.cc:368]: (error) When ii==sec_struct_.size(), sec_struct_[ii] is out of bounds. [stlOutOfBounds]
[protocols/surface_docking/FullatomRelaxMover.cc:383]: (style) Variable 'object_to_copy_to.kT_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/FullatomRelaxMover.cc:384]: (style) Variable 'object_to_copy_to.nmoves_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/FullatomRelaxMover.cc:385]: (style) Variable 'object_to_copy_to.encounter_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/FullatomRelaxMover.cc:386]: (style) Variable 'object_to_copy_to.encounter_cycle_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/FullatomRelaxMover.cc:387]: (style) Variable 'object_to_copy_to.angle_max_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/FullatomRelaxMover.cc:388]: (style) Variable 'object_to_copy_to.score_high_res_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/FullatomRelaxMover.cc:389]: (style) Variable 'object_to_copy_to.small_min_type_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/FullatomRelaxMover.cc:390]: (style) Variable 'object_to_copy_to.shear_min_type_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/FullatomRelaxMover.cc:391]: (style) Variable 'object_to_copy_to.move_map_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/FullatomRelaxMover.cc:392]: (style) Variable 'object_to_copy_to.monte_carlo_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/FullatomRelaxMover.cc:393]: (style) Variable 'object_to_copy_to.small_mover_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/FullatomRelaxMover.cc:394]: (style) Variable 'object_to_copy_to.small_min_mover_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/FullatomRelaxMover.cc:395]: (style) Variable 'object_to_copy_to.small_sequence_mover_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/FullatomRelaxMover.cc:396]: (style) Variable 'object_to_copy_to.small_trial_min_mover_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/FullatomRelaxMover.cc:397]: (style) Variable 'object_to_copy_to.shear_mover_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/FullatomRelaxMover.cc:398]: (style) Variable 'object_to_copy_to.shear_min_mover_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/FullatomRelaxMover.cc:399]: (style) Variable 'object_to_copy_to.shear_sequence_mover_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/FullatomRelaxMover.cc:400]: (style) Variable 'object_to_copy_to.shear_trial_min_mover_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/FullatomRelaxMover.cc:401]: (style) Variable 'object_to_copy_to.sol_sec_struct_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/FullatomRelaxMover.cc:402]: (style) Variable 'object_to_copy_to.ads_sec_struct_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/FullatomRelaxMover.cc:403]: (style) Variable 'object_to_copy_to.sec_struct_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/FullatomRelaxMover.cc:404]: (style) Variable 'object_to_copy_to.surface_contact_mover_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/FullatomRelaxMover.cc:405]: (style) Variable 'object_to_copy_to.surface_orient_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/FullatomRelaxMover.cc:406]: (style) Variable 'object_to_copy_to.dock_mcm_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/FullatomRelaxMover.cc:407]: (style) Variable 'object_to_copy_to.outer_loop_cycles_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/FullatomRelaxMover.cc:408]: (style) Variable 'object_to_copy_to.inner_loop_cycles_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/FullatomRelaxMover.cc:409]: (style) Variable 'object_to_copy_to.surface_parameters_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/SurfaceDockingProtocol.cc:156]: (style) Variable 'object_to_copy_to.score_sidechain_pack_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/SurfaceDockingProtocol.cc:157]: (style) Variable 'object_to_copy_to.sec_struct_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/SurfaceDockingProtocol.cc:158]: (style) Variable 'object_to_copy_to.surface_parameters_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/SurfaceDockingProtocol.cc:159]: (style) Variable 'object_to_copy_to.to_centroid_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/SurfaceDockingProtocol.cc:160]: (style) Variable 'object_to_copy_to.to_full_atom_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/SurfaceDockingProtocol.cc:161]: (style) Variable 'object_to_copy_to.surface_orient_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/SurfaceDockingProtocol.cc:162]: (style) Variable 'object_to_copy_to.abinitio_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/SurfaceDockingProtocol.cc:163]: (style) Variable 'object_to_copy_to.centroid_relax_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/SurfaceDockingProtocol.cc:164]: (style) Variable 'object_to_copy_to.pack_rotamers_fullatom_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/SurfaceDockingProtocol.cc:165]: (style) Variable 'object_to_copy_to.slide_away_from_surface_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/SurfaceDockingProtocol.cc:166]: (style) Variable 'object_to_copy_to.slide_into_surface_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/SurfaceDockingProtocol.cc:167]: (style) Variable 'object_to_copy_to.fullatom_relax_' is assigned a value that is never used. [unreadVariable]
[protocols/surface_docking/SurfaceDockingProtocol.cc:361]: (warning) Assert statement calls a function which may have desired side effects: 'valid_surface_pose'. [assertWithSideEffect]
[protocols/surface_docking/SurfaceParameters.cc:62]: (performance) Variable 'SURFA0_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/surface_docking/SurfaceParameters.cc:63]: (performance) Variable 'SURFA1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/surface_docking/SurfaceParameters.cc:64]: (performance) Variable 'SURFA2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/surface_docking/SurfaceParameters.cc:65]: (performance) Variable 'vecAB_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/surface_docking/SurfaceParameters.cc:66]: (performance) Variable 'vecAC_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/surface_docking/SurfaceParameters.cc:67]: (performance) Variable 'slide_axis_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/switches/GraftSwitchMover.cc:139]: (performance) Variable 'scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/switches/GraftSwitchMover.cc:140]: (performance) Variable 'task_factory_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/switches/GraftSwitchMover.cc:141]: (performance) Variable 'start_graft_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/switches/GraftSwitchMover.cc:142]: (performance) Variable 'end_graft_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/switches/GraftSwitchMover.cc:147]: (performance) Variable 'sequences_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/switches/GraftSwitchMover.cc:148]: (performance) Variable 'important_residues_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/switches/GraftSwitchMover.cc:150]: (performance) Variable 'burial_cutoff_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/switches/GraftSwitchMover.cc:152]: (performance) Variable 'threadable_residues_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/switches/GraftSwitchMover.cc:153]: (performance) Variable 'threadable_residues_selector_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/switches/GraftSwitchMover.cc:195]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[protocols/switches/GraftSwitchMover.cc:228] -> [protocols/switches/GraftSwitchMover.cc:276]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/switches/GraftSwitchMover.cc:228] -> [protocols/switches/GraftSwitchMover.cc:281]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/switches/GraftSwitchMover.cc:228] -> [protocols/switches/GraftSwitchMover.cc:300]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/switches/GraftSwitchMover.cc:253]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[protocols/switches/GraftSwitchMover.cc:642]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[protocols/switches/GraftSwitchMover.cc:659]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[protocols/switches/GraftSwitchMover.cc:683]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[protocols/symmetric_docking/SymDockingHiRes.cc:103]: (warning) Member variable 'SymDockingHiRes::bb_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetric_docking/SymDockingHiRes.cc:103]: (warning) Member variable 'SymDockingHiRes::chi_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetric_docking/SymDockingHiRes.cc:103]: (warning) Member variable 'SymDockingHiRes::nb_list_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetric_docking/SymDockingHiRes.cc:103]: (warning) Member variable 'SymDockingHiRes::repack_switch_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetric_docking/SymDockingHiRes.cc:103]: (warning) Member variable 'SymDockingHiRes::rtmin_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetric_docking/SymDockingHiRes.cc:103]: (warning) Member variable 'SymDockingHiRes::scmin_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetric_docking/SymDockingHiRes.cc:121]: (performance) Function parameter 'min_type_in' should be passed by const reference. [passedByValue]
[protocols/symmetric_docking/SymDockingHiRes.cc:93]: (warning) Member variable 'SymDockingHiRes::bb_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetric_docking/SymDockingHiRes.cc:93]: (warning) Member variable 'SymDockingHiRes::chi_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetric_docking/SymDockingHiRes.cc:93]: (warning) Member variable 'SymDockingHiRes::nb_list_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetric_docking/SymDockingHiRes.cc:93]: (warning) Member variable 'SymDockingHiRes::repack_switch_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetric_docking/SymDockingHiRes.cc:93]: (warning) Member variable 'SymDockingHiRes::rtmin_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetric_docking/SymDockingHiRes.cc:93]: (warning) Member variable 'SymDockingHiRes::scmin_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetric_docking/SymDockingHiRes.cc:95]: (performance) Variable 'scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/symmetric_docking/SymDockingLowRes.cc:132]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/symmetric_docking/SymDockingLowRes.cc:73]: (warning) Member variable 'SymDockingLowRes::bb_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetric_docking/SymDockingLowRes.cc:73]: (warning) Member variable 'SymDockingLowRes::chi_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetric_docking/SymDockingLowRes.cc:73]: (warning) Member variable 'SymDockingLowRes::inner_cycles_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetric_docking/SymDockingLowRes.cc:73]: (warning) Member variable 'SymDockingLowRes::nb_list_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetric_docking/SymDockingLowRes.cc:73]: (warning) Member variable 'SymDockingLowRes::outer_cycles_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetric_docking/SymDockProtocol.cc:401] -> [protocols/symmetric_docking/SymDockProtocol.cc:404]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/symmetric_docking/SymSidechainMinMover.cc:55]: (warning) Member variable 'SymSidechainMinMover::update_movemap_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetry/SetupForSymmetryMover.cc:351]: (style) Parameter 'opts' can be declared with const [constParameter]
[protocols/symmetry/SetupNCSMover.cc:109]: (performance) Function parameter 'src' should be passed by const reference. [passedByValue]
[protocols/symmetry/SetupNCSMover.cc:109]: (performance) Function parameter 'tgt' should be passed by const reference. [passedByValue]
[protocols/symmetry/SetupNCSMover.cc:114]: (performance) Function parameter 'src' should be passed by const reference. [passedByValue]
[protocols/symmetry/SetupNCSMover.cc:168] -> [protocols/symmetry/SetupNCSMover.cc:170]: (style) Variable 'ncs' is reassigned a value before the old one has been used. [redundantAssignment]
[protocols/symmetry/SetupNCSMover.cc:66]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/symmetry/SetupNCSMover.cc:67]: (performance) Variable 'ngroups_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/symmetry/SetupNCSMover.cc:68]: (performance) Variable 'nres_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/symmetry/SymDockingInitialPerturbation.cc:391]: (performance) Function parameter 'SlideCriteria' should be passed by const reference. [passedByValue]
[protocols/symmetry/SymDockingInitialPerturbation.cc:476]: (performance) Function parameter 'threshold' should be passed by const reference. [passedByValue]
[protocols/task_operations/ConservativeDesignOperation.cc:76]: (performance) Function parameter 'data_source' should be passed by const reference. [passedByValue]
[protocols/task_operations/PruneBuriedUnsatsOperation.cc:235] -> [protocols/task_operations/PruneBuriedUnsatsOperation.cc:237]: (style) Condition 'we_are_the_first_node' is always true [knownConditionTrueFalse]
[protocols/task_operations/PruneBuriedUnsatsOperation.cc:371]: (performance) Variable 'scorefxn_sc_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/task_operations/ResfileCommandOperation.cc:52]: (performance) Variable 'command_map_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/task_operations/ResfileCommandOperation.cc:59]: (performance) Variable 'command_map_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/task_operations/ResfileCommandOperation.cc:75]: (performance) Variable 'command_map_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/task_operations/ResidueProbDesignOperation.cc:277]: (performance) Searching before insertion is not necessary. [stlFindInsert]
[protocols/task_operations/RestrictIdentitiesAtAlignedPositions.cc:78]: (performance) Variable 'source_pose_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/task_operations/RestrictToMoveMapChiOperation.cc:40]: (performance) Variable 'movemap_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/task_operations/SelectByDeltaScoreOperation.cc:78]: (warning) Member variable 'SelectByDeltaScoreOperation::individual_hbonds_' is not initialized in the constructor. [uninitMemberVar]
[protocols/task_operations/SelectByDeltaScoreOperation.cc:78]: (warning) Member variable 'SelectByDeltaScoreOperation::lower_' is not initialized in the constructor. [uninitMemberVar]
[protocols/task_operations/SelectByDeltaScoreOperation.cc:78]: (warning) Member variable 'SelectByDeltaScoreOperation::score_type_' is not initialized in the constructor. [uninitMemberVar]
[protocols/task_operations/SequenceMotifTaskOperation.cc:75]: (performance) Variable 'motif_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/task_operations/ThreadSequenceOperation.cc:64]: (warning) Member variable 'ThreadSequenceOperation::allow_design_around_' is not initialized in the constructor. [uninitMemberVar]
[protocols/tcr/TCRloopRefine.cc:48]: (performance) Variable 'aseqs_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/tcr/TCRloopRefine.cc:61]: (performance) Variable 'aseqs_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/tcr/TCRloopRefine.cc:62]: (performance) Variable 'bseqs_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/tcr/TCRloopRefine.cc:63]: (performance) Variable 'aposi_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/tcr/TCRloopRefine.cc:64]: (performance) Variable 'bposi_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/tcr/TCRmodel.cc:52]: (performance) Variable 'tsinfo' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/tcr/TCRseqInfo.cc:84]: (performance) Function parameter 'alpha_chain_sequence' should be passed by const reference. [passedByValue]
[protocols/tcr/TCRseqInfo.cc:84]: (performance) Function parameter 'beta_chain_sequence' should be passed by const reference. [passedByValue]
[protocols/tcr/template_util.cc:104]: (style) Variable 'best_content' is assigned a value that is never used. [unreadVariable]
[protocols/tcr/template_util.cc:110]: (style) Variable 'best_content' is assigned a value that is never used. [unreadVariable]
[protocols/tcr/template_util.cc:146]: (style) Parameter 'atmplt' can be declared with const [constParameter]
[protocols/tcr/template_util.cc:146]: (style) Parameter 'btmplt' can be declared with const [constParameter]
[protocols/tcr/template_util.cc:170]: (performance) Function parameter 'blast_db' should be passed by const reference. [passedByValue]
[protocols/tcr/template_util.cc:170]: (performance) Function parameter 'query' should be passed by const reference. [passedByValue]
[protocols/tcr/template_util.cc:69]: (style) Variable 'best_content' is assigned a value that is never used. [unreadVariable]
[protocols/tcr/template_util.cc:75]: (style) Variable 'best_content' is assigned a value that is never used. [unreadVariable]
[protocols/tcr/template_util.hh:39]: (performance) Function parameter 'blast_db' should be passed by const reference. [passedByValue]
[protocols/tcr/template_util.hh:39]: (performance) Function parameter 'query' should be passed by const reference. [passedByValue]
[protocols/tcr/util.cc:364]: (style) The scope of the variable 'count' can be reduced. [variableScope]
[protocols/toolbox/CalcInterNeighborGroup.cc:72]: (performance) Variable 'num_neighbors_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/toolbox/CalcInterNeighborGroup.cc:73]: (performance) Variable 'dist_cutoff_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/toolbox/Cluster.impl.hh:34] -> [protocols/toolbox/DecoySetEvaluation.impl.hh:33]: (style) Local variable '_impl_tr' shadows outer variable [shadowVariable]
[protocols/toolbox/DecoySetEvaluation.cc:140]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/toolbox/DecoySetEvaluation.cc:281]: (style) Parameter 'average_structure' can be declared with const [constParameter]
[protocols/toolbox/DecoySetEvaluation.cc:291]: (style) Parameter 'average_structure' can be declared with const [constParameter]
[protocols/toolbox/DecoySetEvaluation.cc:339]: (style) Parameter 'result' can be declared with const [constParameter]
[protocols/toolbox/DecoySetEvaluation.hh:50]: (performance) Variable 'it_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/toolbox/DecoySetEvaluation.hh:62]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[protocols/toolbox/DecoySetEvaluation.hh:67]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[protocols/toolbox/IGEdgeReweighters.hh:39]: (performance) Variable 'weight_factor_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/toolbox/InteratomicVarianceMatrix.hh:30]: (style) Parameter 'ivm' can be declared with const [constParameter]
[protocols/toolbox/KCluster.cc:142]: (performance) Inefficient usage of string::find() in condition; string::starts_with() could be faster. [stlIfStrFind]
[protocols/toolbox/KCluster.cc:330]: (performance) Function parameter 't' should be passed by const reference. [passedByValue]
[protocols/toolbox/KCluster.cc:465]: (performance) Variable 'n_cluster_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/toolbox/KCluster.cc:513]: (performance) Variable 'threshold_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/toolbox/KCluster.cc:717]: (performance) Variable 'radius_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/toolbox/match_enzdes_util/AlignPoseToInvrotTreeMover.cc:149]: (style) Variable 'target_it' is assigned a value that is never used. [unreadVariable]
[protocols/toolbox/match_enzdes_util/EnzConstraintIO.cc:85]: (performance) Variable 'restype_set_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/toolbox/match_enzdes_util/EnzConstraintParameters.cc:719]: (style) Variable 'pdbinfo' can be declared with const [constVariable]
[protocols/toolbox/match_enzdes_util/EnzdesSeqRecoveryCache.cc:61]: (performance) Variable 'sequence_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/toolbox/match_enzdes_util/EnzdesSeqRecoveryCache.cc:62]: (performance) Variable 'designable_residues_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/toolbox/match_enzdes_util/EnzdesSeqRecoveryCache.cc:69]: (style) Parameter 'native_pose' can be declared with const [constParameter]
[protocols/toolbox/match_enzdes_util/InvrotTree.cc:91]: (performance) Function parameter 'filename_base' should be passed by const reference. [passedByValue]
[protocols/toolbox/match_enzdes_util/InvrotTreeNodeBase.cc:63]: (style) Redundant checking of STL container element existence before removing it. [redundantIfRemove]
[protocols/toolbox/match_enzdes_util/MatchConstraintFileInfo.cc:341]: (style) Parameter 'attlist' can be declared with const [constParameter]
[protocols/toolbox/match_enzdes_util/MatchConstraintFileInfo.cc:480]: (style) Unused variable: res3 [unusedVariable]
[protocols/toolbox/rigid_body/util.cc:263] -> [protocols/toolbox/rigid_body/util.cc:265]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/toolbox/sample_around/util.cc:195]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/toolbox/superimpose.cc:182]: (style) Parameter 'coords' can be declared with const [constParameter]
[protocols/toolbox/superimpose.cc:357]: (style) Parameter 'x' can be declared with const [constParameter]
[protocols/toolbox/superimpose.cc:380]: (style) Parameter 'x' can be declared with const [constParameter]
[protocols/topology_broker/AsymFoldandDockClaimer.cc:111]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[protocols/topology_broker/AsymFoldandDockClaimer.cc:62]: (performance) Variable 'chain_break_res_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/ClaimerMessage.cc:58]: (performance) Function parameter 'label' should be passed by const reference. [passedByValue]
[protocols/topology_broker/claims/BBClaim.hh:60]: (performance) Variable 'local_pos_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/claims/JumpClaim.hh:100]: (performance) Function parameter 'atom1' should be passed by const reference. [passedByValue]
[protocols/topology_broker/claims/JumpClaim.hh:101]: (performance) Function parameter 'atom2' should be passed by const reference. [passedByValue]
[protocols/topology_broker/claims/JumpClaim.hh:60]: (performance) Function parameter 'atom1' should be passed by const reference. [passedByValue]
[protocols/topology_broker/claims/JumpClaim.hh:61]: (performance) Function parameter 'atom2' should be passed by const reference. [passedByValue]
[protocols/topology_broker/claims/JumpClaim.hh:68]: (performance) Variable 'local_pos1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/claims/JumpClaim.hh:81]: (performance) Variable 'local_pos1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/CutBiasClaimer.cc:63]: (performance) Function parameter 'label' should be passed by const reference. [passedByValue]
[protocols/topology_broker/CutBiasClaimer.cc:74]: (performance) Variable 'cut_bias_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/DensityScoringClaimer.cc:102]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[protocols/topology_broker/DisulfJumpClaimer.cc:239]: (style) Variable 'local_pos1' is assigned a value that is never used. [unreadVariable]
[protocols/topology_broker/DisulfJumpClaimer.cc:240]: (style) Variable 'local_pos2' is assigned a value that is never used. [unreadVariable]
[protocols/topology_broker/FibrilModelingClaimer.cc:62]: (performance) Function parameter 'rigid' should be passed by const reference. [passedByValue]
[protocols/topology_broker/FibrilModelingClaimer.cc:65]: (performance) Variable 'rigid_core_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/FibrilModelingClaimer.cc:72]: (performance) Function parameter 'input_rigid' should be passed by const reference. [passedByValue]
[protocols/topology_broker/FibrilModelingClaimer.cc:72]: (performance) Function parameter 'rigid' should be passed by const reference. [passedByValue]
[protocols/topology_broker/FibrilModelingClaimer.cc:75]: (performance) Variable 'rigid_core_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/FibrilModelingClaimer.cc:76]: (performance) Variable 'input_rigid_core_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/FragmentClaimer.cc:118]: (performance) Variable 'movemap_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/FragmentClaimer.cc:119]: (performance) Variable 'mover_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/FragmentClaimer.cc:120]: (performance) Variable 'mover_tag_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/FragmentClaimer.cc:123]: (performance) Variable 'region_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/FragmentClaimer.cc:166]: (warning) Assert statement calls a function which may have desired side effects: 'fragments'. [assertWithSideEffect]
[protocols/topology_broker/FragmentClaimer.cc:72]: (performance) Variable 'movemap_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/FragmentClaimer.cc:82]: (performance) Variable 'movemap_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/FragmentClaimer.cc:86]: (performance) Function parameter 'label' should be passed by const reference. [passedByValue]
[protocols/topology_broker/FragmentClaimer.cc:93]: (performance) Variable 'movemap_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/FragmentJumpClaimer.cc:63]: (warning) Member variable 'FragmentJumpClaimer::discard_jumps_' is not initialized in the constructor. [uninitMemberVar]
[protocols/topology_broker/FragmentJumpClaimer.cc:71]: (warning) Member variable 'FragmentJumpClaimer::discard_jumps_' is not initialized in the constructor. [uninitMemberVar]
[protocols/topology_broker/FragmentJumpClaimer.cc:84]: (performance) Variable 'jump_def_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/FragmentJumpClaimer.cc:85]: (performance) Variable 'current_jumps_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/FragmentJumpClaimer.cc:86]: (performance) Variable 'init_mover_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:100]: (performance) Variable 'grid_atom_name_1_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:101]: (performance) Variable 'grid_atom_name_1_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:103]: (performance) Variable 'grid_atom_name_2_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:104]: (performance) Variable 'grid_atom_name_2_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:105]: (performance) Variable 'grid_atom_name_2_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:106]: (performance) Variable 'grid_atom_name_2_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:108]: (performance) Variable 'grid_k_vector_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:109]: (performance) Variable 'grid_k_vector_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:110]: (performance) Variable 'grid_k_vector_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:111]: (performance) Variable 'grid_k_vector_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:118]: (performance) Variable 'pcs_weight_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:119]: (performance) Variable 'pcs_weight_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:120]: (performance) Variable 'pcs_weight_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:121]: (performance) Variable 'pcs_weight_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:314]: (style) Condition 'weight<0' is always false [knownConditionTrueFalse]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:63]: (performance) Variable 'grid_edge_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:64]: (performance) Variable 'grid_edge_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:65]: (performance) Variable 'grid_edge_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:66]: (performance) Variable 'grid_edge_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:68]: (performance) Variable 'grid_step_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:69]: (performance) Variable 'grid_step_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:70]: (performance) Variable 'grid_step_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:71]: (performance) Variable 'grid_step_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:73]: (performance) Variable 'grid_small_cutoff_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:74]: (performance) Variable 'grid_small_cutoff_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:75]: (performance) Variable 'grid_small_cutoff_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:76]: (performance) Variable 'grid_small_cutoff_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:78]: (performance) Variable 'grid_large_cutoff_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:79]: (performance) Variable 'grid_large_cutoff_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:80]: (performance) Variable 'grid_large_cutoff_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:81]: (performance) Variable 'grid_large_cutoff_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:83]: (performance) Variable 'grid_cone_angle_cutoff_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:84]: (performance) Variable 'grid_cone_angle_cutoff_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:85]: (performance) Variable 'grid_cone_angle_cutoff_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:86]: (performance) Variable 'grid_cone_angle_cutoff_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:88]: (performance) Variable 'grid_residue_num_1_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:89]: (performance) Variable 'grid_residue_num_1_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:90]: (performance) Variable 'grid_residue_num_1_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:91]: (performance) Variable 'grid_residue_num_1_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:93]: (performance) Variable 'grid_residue_num_2_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:94]: (performance) Variable 'grid_residue_num_2_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:95]: (performance) Variable 'grid_residue_num_2_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:96]: (performance) Variable 'grid_residue_num_2_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:98]: (performance) Variable 'grid_atom_name_1_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController.cc:99]: (performance) Variable 'grid_atom_name_1_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:101]: (performance) Variable 'grid_atom_name_2_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:102]: (performance) Variable 'grid_atom_name_2_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:103]: (performance) Variable 'grid_atom_name_2_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:104]: (performance) Variable 'grid_atom_name_2_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:106]: (performance) Variable 'grid_k_vector_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:107]: (performance) Variable 'grid_k_vector_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:108]: (performance) Variable 'grid_k_vector_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:109]: (performance) Variable 'grid_k_vector_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:116]: (performance) Variable 'pcs_weight_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:117]: (performance) Variable 'pcs_weight_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:118]: (performance) Variable 'pcs_weight_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:119]: (performance) Variable 'pcs_weight_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:316]: (style) Condition 'weight<0' is always false [knownConditionTrueFalse]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:61]: (performance) Variable 'grid_edge_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:62]: (performance) Variable 'grid_edge_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:63]: (performance) Variable 'grid_edge_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:64]: (performance) Variable 'grid_edge_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:66]: (performance) Variable 'grid_step_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:67]: (performance) Variable 'grid_step_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:68]: (performance) Variable 'grid_step_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:69]: (performance) Variable 'grid_step_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:71]: (performance) Variable 'grid_small_cutoff_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:72]: (performance) Variable 'grid_small_cutoff_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:73]: (performance) Variable 'grid_small_cutoff_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:74]: (performance) Variable 'grid_small_cutoff_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:76]: (performance) Variable 'grid_large_cutoff_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:77]: (performance) Variable 'grid_large_cutoff_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:78]: (performance) Variable 'grid_large_cutoff_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:79]: (performance) Variable 'grid_large_cutoff_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:81]: (performance) Variable 'grid_cone_angle_cutoff_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:82]: (performance) Variable 'grid_cone_angle_cutoff_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:83]: (performance) Variable 'grid_cone_angle_cutoff_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:84]: (performance) Variable 'grid_cone_angle_cutoff_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:86]: (performance) Variable 'grid_residue_num_1_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:87]: (performance) Variable 'grid_residue_num_1_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:88]: (performance) Variable 'grid_residue_num_1_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:89]: (performance) Variable 'grid_residue_num_1_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:91]: (performance) Variable 'grid_residue_num_2_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:92]: (performance) Variable 'grid_residue_num_2_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:93]: (performance) Variable 'grid_residue_num_2_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:94]: (performance) Variable 'grid_residue_num_2_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:96]: (performance) Variable 'grid_atom_name_1_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:97]: (performance) Variable 'grid_atom_name_1_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:98]: (performance) Variable 'grid_atom_name_1_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc:99]: (performance) Variable 'grid_atom_name_1_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:100]: (performance) Variable 'grid_atom_name_2_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:101]: (performance) Variable 'grid_atom_name_2_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:102]: (performance) Variable 'grid_atom_name_2_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:103]: (performance) Variable 'grid_atom_name_2_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:105]: (performance) Variable 'grid_k_vector_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:106]: (performance) Variable 'grid_k_vector_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:107]: (performance) Variable 'grid_k_vector_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:108]: (performance) Variable 'grid_k_vector_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:115]: (performance) Variable 'pcs_weight_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:116]: (performance) Variable 'pcs_weight_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:117]: (performance) Variable 'pcs_weight_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:118]: (performance) Variable 'pcs_weight_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:315]: (style) Condition 'weight<0' is always false [knownConditionTrueFalse]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:60]: (performance) Variable 'grid_edge_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:61]: (performance) Variable 'grid_edge_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:62]: (performance) Variable 'grid_edge_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:63]: (performance) Variable 'grid_edge_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:65]: (performance) Variable 'grid_step_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:66]: (performance) Variable 'grid_step_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:67]: (performance) Variable 'grid_step_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:68]: (performance) Variable 'grid_step_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:70]: (performance) Variable 'grid_small_cutoff_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:71]: (performance) Variable 'grid_small_cutoff_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:72]: (performance) Variable 'grid_small_cutoff_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:73]: (performance) Variable 'grid_small_cutoff_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:75]: (performance) Variable 'grid_large_cutoff_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:76]: (performance) Variable 'grid_large_cutoff_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:77]: (performance) Variable 'grid_large_cutoff_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:78]: (performance) Variable 'grid_large_cutoff_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:80]: (performance) Variable 'grid_cone_angle_cutoff_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:81]: (performance) Variable 'grid_cone_angle_cutoff_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:82]: (performance) Variable 'grid_cone_angle_cutoff_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:83]: (performance) Variable 'grid_cone_angle_cutoff_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:85]: (performance) Variable 'grid_residue_num_1_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:86]: (performance) Variable 'grid_residue_num_1_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:87]: (performance) Variable 'grid_residue_num_1_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:88]: (performance) Variable 'grid_residue_num_1_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:90]: (performance) Variable 'grid_residue_num_2_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:91]: (performance) Variable 'grid_residue_num_2_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:92]: (performance) Variable 'grid_residue_num_2_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:93]: (performance) Variable 'grid_residue_num_2_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:95]: (performance) Variable 'grid_atom_name_1_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:96]: (performance) Variable 'grid_atom_name_1_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:97]: (performance) Variable 'grid_atom_name_1_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc:98]: (performance) Variable 'grid_atom_name_1_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:101]: (performance) Variable 'grid_atom_name_2_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:102]: (performance) Variable 'grid_atom_name_2_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:103]: (performance) Variable 'grid_atom_name_2_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:104]: (performance) Variable 'grid_atom_name_2_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:106]: (performance) Variable 'grid_k_vector_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:107]: (performance) Variable 'grid_k_vector_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:108]: (performance) Variable 'grid_k_vector_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:109]: (performance) Variable 'grid_k_vector_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:116]: (performance) Variable 'pcs_weight_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:117]: (performance) Variable 'pcs_weight_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:118]: (performance) Variable 'pcs_weight_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:119]: (performance) Variable 'pcs_weight_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:316]: (style) Condition 'weight<0' is always false [knownConditionTrueFalse]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:61]: (performance) Variable 'grid_edge_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:62]: (performance) Variable 'grid_edge_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:63]: (performance) Variable 'grid_edge_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:64]: (performance) Variable 'grid_edge_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:66]: (performance) Variable 'grid_step_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:67]: (performance) Variable 'grid_step_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:68]: (performance) Variable 'grid_step_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:69]: (performance) Variable 'grid_step_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:71]: (performance) Variable 'grid_small_cutoff_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:72]: (performance) Variable 'grid_small_cutoff_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:73]: (performance) Variable 'grid_small_cutoff_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:74]: (performance) Variable 'grid_small_cutoff_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:76]: (performance) Variable 'grid_large_cutoff_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:77]: (performance) Variable 'grid_large_cutoff_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:78]: (performance) Variable 'grid_large_cutoff_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:79]: (performance) Variable 'grid_large_cutoff_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:81]: (performance) Variable 'grid_cone_angle_cutoff_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:82]: (performance) Variable 'grid_cone_angle_cutoff_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:83]: (performance) Variable 'grid_cone_angle_cutoff_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:84]: (performance) Variable 'grid_cone_angle_cutoff_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:86]: (performance) Variable 'grid_residue_num_1_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:87]: (performance) Variable 'grid_residue_num_1_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:88]: (performance) Variable 'grid_residue_num_1_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:89]: (performance) Variable 'grid_residue_num_1_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:91]: (performance) Variable 'grid_residue_num_2_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:92]: (performance) Variable 'grid_residue_num_2_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:93]: (performance) Variable 'grid_residue_num_2_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:94]: (performance) Variable 'grid_residue_num_2_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:96]: (performance) Variable 'grid_atom_name_1_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:97]: (performance) Variable 'grid_atom_name_1_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:98]: (performance) Variable 'grid_atom_name_1_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc:99]: (performance) Variable 'grid_atom_name_1_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:100]: (performance) Variable 'grid_atom_name_2_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:101]: (performance) Variable 'grid_atom_name_2_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:102]: (performance) Variable 'grid_atom_name_2_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:103]: (performance) Variable 'grid_atom_name_2_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:105]: (performance) Variable 'grid_k_vector_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:106]: (performance) Variable 'grid_k_vector_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:107]: (performance) Variable 'grid_k_vector_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:108]: (performance) Variable 'grid_k_vector_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:115]: (performance) Variable 'pcs_weight_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:116]: (performance) Variable 'pcs_weight_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:117]: (performance) Variable 'pcs_weight_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:118]: (performance) Variable 'pcs_weight_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:315]: (style) Condition 'weight<0' is always false [knownConditionTrueFalse]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:60]: (performance) Variable 'grid_edge_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:61]: (performance) Variable 'grid_edge_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:62]: (performance) Variable 'grid_edge_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:63]: (performance) Variable 'grid_edge_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:65]: (performance) Variable 'grid_step_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:66]: (performance) Variable 'grid_step_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:67]: (performance) Variable 'grid_step_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:68]: (performance) Variable 'grid_step_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:70]: (performance) Variable 'grid_small_cutoff_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:71]: (performance) Variable 'grid_small_cutoff_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:72]: (performance) Variable 'grid_small_cutoff_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:73]: (performance) Variable 'grid_small_cutoff_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:75]: (performance) Variable 'grid_large_cutoff_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:76]: (performance) Variable 'grid_large_cutoff_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:77]: (performance) Variable 'grid_large_cutoff_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:78]: (performance) Variable 'grid_large_cutoff_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:80]: (performance) Variable 'grid_cone_angle_cutoff_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:81]: (performance) Variable 'grid_cone_angle_cutoff_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:82]: (performance) Variable 'grid_cone_angle_cutoff_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:83]: (performance) Variable 'grid_cone_angle_cutoff_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:85]: (performance) Variable 'grid_residue_num_1_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:86]: (performance) Variable 'grid_residue_num_1_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:87]: (performance) Variable 'grid_residue_num_1_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:88]: (performance) Variable 'grid_residue_num_1_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:90]: (performance) Variable 'grid_residue_num_2_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:91]: (performance) Variable 'grid_residue_num_2_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:92]: (performance) Variable 'grid_residue_num_2_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:93]: (performance) Variable 'grid_residue_num_2_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:95]: (performance) Variable 'grid_atom_name_1_stage1_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:96]: (performance) Variable 'grid_atom_name_1_stage2_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:97]: (performance) Variable 'grid_atom_name_1_stage3_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc:98]: (performance) Variable 'grid_atom_name_1_stage4_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/RigidChunkClaimer.cc:70]: (performance) Function parameter 'query_pose' should be passed by const reference. [passedByValue]
[protocols/topology_broker/RigidChunkClaimer.cc:85]: (performance) Function parameter 'rigid' should be passed by const reference. [passedByValue]
[protocols/topology_broker/RigidChunkClaimer.hh:50]: (performance) Function parameter 'to' should be passed by const reference. [passedByValue]
[protocols/topology_broker/SequenceNumberResolver.cc:47]: (performance) Variable 'offset_map_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/SequenceNumberResolver.cc:48]: (performance) Variable 'offset_map_reversed_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/TemplateJumpClaimer.cc:64]: (warning) Member variable 'TemplateJumpClaimer::bRandomSheet_' is not initialized in the constructor. [uninitMemberVar]
[protocols/topology_broker/TemplateJumpClaimer.cc:69]: (performance) Function parameter 'config_file' should be passed by const reference. [passedByValue]
[protocols/topology_broker/TMHTopologySamplerClaimer.cc:652] -> [protocols/topology_broker/TMHTopologySamplerClaimer.cc:660]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[protocols/topology_broker/TopologyBroker.cc:111]: (performance) Variable 'sequence_number_resolver_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/TopologyBroker.cc:121]: (performance) Variable 'current_claims_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/TopologyBroker.cc:122]: (performance) Variable 'nres_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/TopologyBroker.cc:123]: (performance) Variable 'fold_tree_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/TopologyBroker.cc:124]: (performance) Variable 'final_fold_tree_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/TopologyBroker.cc:125]: (performance) Variable 'repack_scorefxn_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/TopologyBroker.cc:126]: (performance) Variable 'to_be_closed_cuts_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/TopologyBroker.cc:127]: (performance) Variable 'start_pose_cuts_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/TopologyBroker.cc:129]: (performance) Variable 'current_pose_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/TopologyBroker.cc:130]: (performance) Variable 'sequence_number_resolver_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/topology_broker/TopologyBroker.cc:404] -> [protocols/topology_broker/TopologyBroker.cc:428]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/topology_broker/TopologyBroker.cc:404] -> [protocols/topology_broker/TopologyBroker.cc:447]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/topology_broker/TopologyBroker.cc:404] -> [protocols/topology_broker/TopologyBroker.cc:455]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/topology_broker/TopologyBroker.cc:404] -> [protocols/topology_broker/TopologyBroker.cc:472]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/topology_broker/TopologyBroker.cc:404] -> [protocols/topology_broker/TopologyBroker.cc:478]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/topology_broker/TopologyBroker.cc:404] -> [protocols/topology_broker/TopologyBroker.cc:486]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/topology_broker/TopologyBroker.cc:404] -> [protocols/topology_broker/TopologyBroker.cc:497]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/topology_broker/TopologyBroker.cc:651] -> [protocols/topology_broker/TopologyBroker.cc:692]: (style) Local variable 'dof_msg' shadows outer variable [shadowVariable]
[protocols/topology_broker/TopologyBroker.cc:700]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/topology_broker/TopologyBroker.cc:939]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/topology_broker/TopologyBroker.cc:970]: (style) Variable 'init_pose' is assigned a value that is never used. [unreadVariable]
[protocols/topology_broker/TopologyClaimer.cc:105]: (performance) Function parameter 'tag' should be passed by const reference. [passedByValue]
[protocols/topology_broker/util.cc:303]: (style) Variable 'chain_poses' is assigned a value that is never used. [unreadVariable]
[protocols/trajectory/DbTrajectoryReader.cc:58]: (performance) Variable 'db_session_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/unfolded_state_energy_calculator/UnfoldedStateEnergyCalculatorMover.cc:168] -> [protocols/unfolded_state_energy_calculator/UnfoldedStateEnergyCalculatorMover.cc:181]: (style) Local variable 'i' shadows outer variable [shadowVariable]
[protocols/unfolded_state_energy_calculator/UnfoldedStateEnergyCalculatorMover.cc:192]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/unfolded_state_energy_calculator/UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor.cc:250]: (performance) Function parameter 'tlc' should be passed by const reference. [passedByValue]
[protocols/vardist_solaccess/VarSolDRotamerDots.cc:153]: (performance) Variable 'num_atoms_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/vardist_solaccess/VarSolDRotamerDots.cc:199]: (warning) Member variable 'VarSolDRotamerDots::lg_angles_' is not assigned a value in 'VarSolDRotamerDots::operator='. [operatorEqVarError]
[protocols/vardist_solaccess/VarSolDRotamerDots.cc:199]: (warning) Member variable 'VarSolDRotamerDots::lg_masks_' is not assigned a value in 'VarSolDRotamerDots::operator='. [operatorEqVarError]
[protocols/vardist_solaccess/VarSolDRotamerDots.cc:749]: (performance) Function parameter 'elem' should be passed by const reference. [passedByValue]
[protocols/viewer/triangleIterator.cc:36]: (performance) Variable 'size' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/viewer/triangleIterator.cc:38]: (warning) Class 'triangleIterator' does not have a copy constructor which is recommended since it has dynamic memory/resource allocation(s). [noCopyConstructor]
[protocols/viewer/triangleIterator.cc:38]: (warning) Class 'triangleIterator' does not have a operator= which is recommended since it has dynamic memory/resource allocation(s). [noOperatorEq]
[protocols/vip/VIP_Mover.cc:149]: (style) Parameter 'posey' can be declared with const [constParameter]
[protocols/vip/VIP_Mover.cc:284]: (style) Variable 'basePose' is assigned a value that is never used. [unreadVariable]
[protocols/vip/VIP_Mover.cc:357] -> [protocols/vip/VIP_Mover.cc:359]: (warning) Identical inner 'if' condition is always true. [identicalInnerCondition]
[protocols/vip/VIP_Mover.cc:367] -> [protocols/vip/VIP_Mover.cc:369]: (warning) Identical inner 'if' condition is always true. [identicalInnerCondition]
[protocols/vip/VIP_Mover.cc:377] -> [protocols/vip/VIP_Mover.cc:379]: (warning) Identical inner 'if' condition is always true. [identicalInnerCondition]
[protocols/vip/VIP_Mover.cc:500]: (style) Parameter 'p1' can be declared with const [constParameter]
[protocols/vip/VIP_Mover.cc:500]: (style) Parameter 'p2' can be declared with const [constParameter]
[protocols/vip/VIP_Mover.cc:98]: (performance) Function parameter 'pose' should be passed by const reference. [passedByValue]
[protocols/vip/VIP_Report.cc:132]: (style) Parameter 'goe_native' can be declared with const [constParameter]
[protocols/vip/VIP_Report.cc:41]: (style) Parameter 'goe_repack_pos' can be declared with const [constParameter]
[protocols/vip/VIP_Utils.cc:47]: (style) Parameter 'pose' can be declared with const [constParameter]
[protocols/wum/SilentStructStore.cc:200]: (style) Variable 'comments' is assigned a value that is never used. [unreadVariable]
[protocols/wum/WorkUnitBase.cc:119]: (style) Same expression on both sides of '-'. [duplicateExpression]
[protocols/wum/WorkUnitBase.cc:81]: (style) C-style pointer casting [cstyleCast]
[protocols/wum/WorkUnitManager.hh:124]: (style) Unused private function: 'WorkUnitQueue_Swapped::set_swap_file' [unusedPrivateFunction]
[utility/dating.cc:42] -> [utility/dating.cc:47]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[utility/dating.cc:92] -> [utility/dating.cc:97]: (style) The if condition is the same as the previous if condition [duplicateCondition]
[utility/DereferenceIterator.hh:50]: (performance) Variable 'it_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[utility/DereferenceIterator.hh:64]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[utility/DereferenceIterator.hh:69]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[utility/graph/Digraph.cc:463] -> [utility/graph/Digraph.cc:739] -> [utility/graph/Digraph.hh:823]: (warning) Virtual function 'delete_edge' is called from destructor '~Digraph()' at line 463. Dynamic binding is not used. [virtualCallInConstructor]
[utility/graph/Digraph.cc:529] -> [utility/graph/Digraph.cc:593] -> [utility/graph/Digraph.hh:860]: (warning) Virtual function 'create_new_edge' is called from copy constructor 'Digraph(const Digraph&source)' at line 529. Dynamic binding is not used. [virtualCallInConstructor]
[utility/graph/Graph.cc:475] -> [utility/graph/Graph.cc:797] -> [utility/graph/Graph.hh:785]: (warning) Virtual function 'delete_edge' is called from destructor '~Graph()' at line 475. Dynamic binding is not used. [virtualCallInConstructor]
[utility/graph/Graph.cc:541] -> [utility/graph/Graph.cc:610] -> [utility/graph/Graph.hh:826]: (warning) Virtual function 'create_new_edge' is called from copy constructor 'Graph(const Graph&source)' at line 541. Dynamic binding is not used. [virtualCallInConstructor]
[utility/graph/Graph.hh:602]: (portability) Returning an integer in a function with pointer return type is not portable. [CastIntegerToAddressAtReturn]
[utility/graph/Graph.hh:611]: (portability) Returning an integer in a function with pointer return type is not portable. [CastIntegerToAddressAtReturn]
[utility/graph/UpperEdgeGraph.hh:429]: (warning) Assert statement calls a function which may have desired side effects: 'edge_exists'. [assertWithSideEffect]
[utility/graph/UpperEdgeGraph.hh:430]: (warning) Assert statement calls a function which may have desired side effects: 'edge_exists'. [assertWithSideEffect]
[utility/graph/UpperEdgeGraph.hh:440]: (warning) Assert statement calls a function which may have desired side effects: 'edge_exists'. [assertWithSideEffect]
[utility/graph/UpperEdgeGraph.hh:441]: (warning) Assert statement calls a function which may have desired side effects: 'edge_exists'. [assertWithSideEffect]
[utility/inline_file_provider.cc:47]: (style) Parameter 'a' can be declared with const [constParameter]
[utility/io/GeneralFileManager.cc:46]: (performance) Variable 'file_contents_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[utility/io/irstream.hh:111] -> [utility/io/izstream.hh:173]: (style) The function 'operator>>' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
[utility/io/izstream.hh:760]: (style) Parameter 'stream' can be declared with const [constParameter]
[utility/io/mpistream.hh:159]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[utility/io/mpistream.hh:245]: (performance) Function parameter 'filename' should be passed by const reference. [passedByValue]
[utility/io/mpistream.ipp:32]: (warning) Member variable 'basic_mpi_streambuf::channel_id_' is not initialized in the constructor. [uninitMemberVar]
[utility/io/mpistream.ipp:32]: (warning) Member variable 'basic_mpi_streambuf::file_status_' is not initialized in the constructor. [uninitMemberVar]
[utility/io/mpistream.ipp:32]: (warning) Member variable 'basic_mpi_streambuf::my_rank_' is not initialized in the constructor. [uninitMemberVar]
[utility/io/zipstream.ipp:175]: (style) Variable 'written_byte_size' is assigned a value that is never used. [unreadVariable]
[utility/io/zipstream.ipp:181]: (style) Variable 'remainder' is assigned a value that is never used. [unreadVariable]
[utility/io/zipstream.ipp:238]: (style) Variable 'written_byte_size' is assigned a value that is never used. [unreadVariable]
[utility/io/zipstream.ipp:246]: (style) Variable 'remainder' is assigned a value that is never used. [unreadVariable]
[utility/io/zipstream.ipp:517]: (style) Variable 'zip_stream' can be declared with const [constVariable]
[utility/json_spirit/json_spirit_reader_template.h:631]: (style) Variable 'mp_iters' is assigned a value that is never used. [unreadVariable]
[utility/json_spirit/json_spirit_writer_template.h:299]: (style) Unused private function: 'Generator::indent' [unusedPrivateFunction]
[utility/json_spirit/json_spirit_writer_template.h:313]: (style) Unused private function: 'Generator::new_line' [unusedPrivateFunction]
[utility/libsvm/Svm_rosetta.cc:30]: (performance) Variable 'index_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[utility/libsvm/Svm_rosetta.cc:31]: (performance) Variable 'value_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[utility/options/mpi_stderr.cc:34] -> [utility/options/mpi_stderr.cc:40]: (style) The expression 'mpi_rank == 0' is always true. [knownConditionTrueFalse]
[utility/options/OptionCollection.cc:1644]: (error) syntax error: ':' += [syntaxError]
[utility/signals/BufferedSignalHub.hh:165]: (performance) Function parameter 's' should be passed by const reference. [passedByValue]
[utility/string_util.cc:585]: (style) Variable 'start_position' is assigned a value that is never used. [unreadVariable]
[utility/string_util.hh:170] -> [utility/vector1.functions.hh:269]: (style) Local variable 'upper' shadows outer function [shadowFunction]
[utility/string_util.hh:174] -> [utility/vector1.functions.hh:269]: (style) Local variable 'lower' shadows outer function [shadowFunction]
[utility/sys_util.hh:38] -> [utility/sys_util.cc:129]: (style) Local variable 'timestamp' shadows outer function [shadowFunction]
[utility/sys_util.hh:38] -> [utility/sys_util.cc:160]: (style) Local variable 'timestamp' shadows outer function [shadowFunction]
[utility/sys_util.hh:38] -> [utility/sys_util.cc:194]: (style) Local variable 'timestamp' shadows outer function [shadowFunction]
[utility/tag/XMLSchemaGeneration.cc:212]: (performance) Function parameter 'setting' should be passed by const reference. [passedByValue]
[utility/tag/XMLSchemaGeneration.cc:561]: (performance) Function parameter 'setting' should be passed by const reference. [passedByValue]
[utility/tag/XMLSchemaGeneration.cc:856]: (performance) Function parameter 'setting' should be passed by const reference. [passedByValue]
[utility/tag/XMLSchemaValidation.cc:87]: (portability) Returning an integer in a function with pointer return type is not portable. [CastIntegerToAddressAtReturn]
[utility/tools/make_vector1.hh:208]: (performance) Function parameter 'i0' should be passed by const reference. [passedByValue]
[utility/tools/make_vector1.hh:208]: (performance) Function parameter 'i10' should be passed by const reference. [passedByValue]
[utility/tools/make_vector1.hh:208]: (performance) Function parameter 'i11' should be passed by const reference. [passedByValue]
[utility/tools/make_vector1.hh:208]: (performance) Function parameter 'i12' should be passed by const reference. [passedByValue]
[utility/tools/make_vector1.hh:208]: (performance) Function parameter 'i13' should be passed by const reference. [passedByValue]
[utility/tools/make_vector1.hh:208]: (performance) Function parameter 'i14' should be passed by const reference. [passedByValue]
[utility/tools/make_vector1.hh:208]: (performance) Function parameter 'i15' should be passed by const reference. [passedByValue]
[utility/tools/make_vector1.hh:208]: (performance) Function parameter 'i16' should be passed by const reference. [passedByValue]
[utility/tools/make_vector1.hh:208]: (performance) Function parameter 'i17' should be passed by const reference. [passedByValue]
[utility/tools/make_vector1.hh:208]: (performance) Function parameter 'i18' should be passed by const reference. [passedByValue]
[utility/tools/make_vector1.hh:208]: (performance) Function parameter 'i19' should be passed by const reference. [passedByValue]
[utility/tools/make_vector1.hh:208]: (performance) Function parameter 'i1' should be passed by const reference. [passedByValue]
[utility/tools/make_vector1.hh:208]: (performance) Function parameter 'i20' should be passed by const reference. [passedByValue]
[utility/tools/make_vector1.hh:208]: (performance) Function parameter 'i21' should be passed by const reference. [passedByValue]
[utility/tools/make_vector1.hh:208]: (performance) Function parameter 'i22' should be passed by const reference. [passedByValue]
[utility/tools/make_vector1.hh:208]: (performance) Function parameter 'i23' should be passed by const reference. [passedByValue]
[utility/tools/make_vector1.hh:208]: (performance) Function parameter 'i2' should be passed by const reference. [passedByValue]
[utility/tools/make_vector1.hh:208]: (performance) Function parameter 'i3' should be passed by const reference. [passedByValue]
[utility/tools/make_vector1.hh:208]: (performance) Function parameter 'i4' should be passed by const reference. [passedByValue]
[utility/tools/make_vector1.hh:208]: (performance) Function parameter 'i5' should be passed by const reference. [passedByValue]
[utility/tools/make_vector1.hh:208]: (performance) Function parameter 'i6' should be passed by const reference. [passedByValue]
[utility/tools/make_vector1.hh:208]: (performance) Function parameter 'i7' should be passed by const reference. [passedByValue]
[utility/tools/make_vector1.hh:208]: (performance) Function parameter 'i8' should be passed by const reference. [passedByValue]
[utility/tools/make_vector1.hh:208]: (performance) Function parameter 'i9' should be passed by const reference. [passedByValue]
[utility/vector0_bool.hh:174]: (performance) Function parameter 'beg' should be passed by const reference. [passedByValue]
[utility/vector0_bool.hh:174]: (performance) Function parameter 'ending' should be passed by const reference. [passedByValue]
[utility/vector1_bool.hh:173]: (performance) Function parameter 'beg' should be passed by const reference. [passedByValue]
[utility/vector1_bool.hh:173]: (performance) Function parameter 'ending' should be passed by const reference. [passedByValue]
[utility/vector1.hh:184]: (performance) Function parameter 'beg' should be passed by const reference. [passedByValue]
[utility/vector1.hh:184]: (performance) Function parameter 'ending' should be passed by const reference. [passedByValue]
[utility/vector1.hh:272]: (performance) Function parameter 't' should be passed by const reference. [passedByValue]
[utility/vector1.hh:281]: (performance) Function parameter 't' should be passed by const reference. [passedByValue]
######################################################
# Additional issues from cppcheck version 1.82
######################################################
[ObjexxFCL/DimensionExpressionCon.hh:26]: (warning) The class 'DimensionExpressionCon' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[ObjexxFCL/DimensionExpressionCube.hh:111]: (error) Returning/dereferencing 'exp_p_' after it is deallocated / released [deallocret]
[ObjexxFCL/DimensionExpressionCube.hh:27]: (warning) The class 'DimensionExpressionCube' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[ObjexxFCL/DimensionExpressionDiv.hh:125]: (error) Returning/dereferencing 'exp1_p_' after it is deallocated / released [deallocret]
[ObjexxFCL/DimensionExpressionDiv.hh:27]: (warning) The class 'DimensionExpressionDiv' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[ObjexxFCL/DimensionExpressionMax.hh:124]: (error) Returning/dereferencing 'exp1_p_' after it is deallocated / released [deallocret]
[ObjexxFCL/DimensionExpressionMax.hh:30]: (warning) The class 'DimensionExpressionMax' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[ObjexxFCL/DimensionExpressionMin.hh:124]: (error) Returning/dereferencing 'exp1_p_' after it is deallocated / released [deallocret]
[ObjexxFCL/DimensionExpressionMin.hh:30]: (warning) The class 'DimensionExpressionMin' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[ObjexxFCL/DimensionExpressionMul.hh:121]: (error) Returning/dereferencing 'exp1_p_' after it is deallocated / released [deallocret]
[ObjexxFCL/DimensionExpressionMul.hh:27]: (warning) The class 'DimensionExpressionMul' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[ObjexxFCL/DimensionExpressionPow.hh:125]: (error) Returning/dereferencing 'exp1_p_' after it is deallocated / released [deallocret]
[ObjexxFCL/DimensionExpressionPow.hh:31]: (warning) The class 'DimensionExpressionPow' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[ObjexxFCL/DimensionExpressionRef.hh:29]: (warning) The class 'DimensionExpressionRef' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[ObjexxFCL/DimensionExpressionSquare.hh:111]: (error) Returning/dereferencing 'exp_p_' after it is deallocated / released [deallocret]
[ObjexxFCL/DimensionExpressionSquare.hh:27]: (warning) The class 'DimensionExpressionSquare' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[ObjexxFCL/DimensionExpressionSub.hh:121]: (error) Returning/dereferencing 'exp1_p_' after it is deallocated / released [deallocret]
[ObjexxFCL/DimensionExpressionSub.hh:27]: (warning) The class 'DimensionExpressionSub' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[ObjexxFCL/DimensionExpressionSum.hh:121]: (error) Returning/dereferencing 'exp1_p_' after it is deallocated / released [deallocret]
[ObjexxFCL/DimensionExpressionSum.hh:27]: (warning) The class 'DimensionExpressionSum' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[apps/public/analysis/per_residue_solvent_exposure.cc:117]: (performance) Function parameter 'pose' should be passed by reference. [passedByValue]
[apps/public/analysis/per_residue_solvent_exposure.cc:133]: (performance) Function parameter 'pose' should be passed by reference. [passedByValue]
[apps/public/analysis/per_residue_solvent_exposure.cc:163]: (performance) Function parameter 'pose' should be passed by reference. [passedByValue]
[apps/public/analysis/per_residue_solvent_exposure.cc:195]: (performance) Function parameter 'pose' should be passed by reference. [passedByValue]
[apps/public/analysis/per_residue_solvent_exposure.cc:75]: (performance) Function parameter 'pose' should be passed by reference. [passedByValue]
[apps/public/analysis/per_residue_solvent_exposure.cc:95]: (performance) Function parameter 'pose' should be passed by reference. [passedByValue]
[basic/MetricValue.hh:53]: (warning) The class 'MetricValue' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[basic/Tracer.hh:257]: (performance) Function parameter 'b' should be passed by reference. [passedByValue]
[basic/TracerImpl.cc:171]: (performance) Function parameter 'channel' should be passed by reference. [passedByValue]
[basic/database/schema_generator/Schema.hh:34]: (warning) The class 'Schema' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[basic/resource_manager/ResourceLocator.hh:62]: (warning) The class 'ResourceLocator' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[basic/resource_manager/locator/DatabaseResourceLocator.hh:52]: (warning) The class 'DatabaseResourceLocator' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[basic/resource_manager/locator/FileSystemResourceLocator.hh:76]: (warning) The class 'FileSystemResourceLocator' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[basic/resource_manager/locator/StringResourceStream.hh:35]: (warning) The class 'StringResourceStream' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[basic/sampling/orientations/QuaternionGrid.hh:192]: (performance) Function parameter '_name' should be passed by reference. [passedByValue]
[core/chemical/AtomType.hh:79]: (performance) Function parameter 'element_in' should be passed by reference. [passedByValue]
[core/chemical/AtomTypeSet.cc:222]: (performance) Inefficient usage of string::find() in condition; string::compare() would be faster. [stlIfStrFind]
[core/chemical/AtomTypeSet.cc:380]: (performance) Inefficient usage of string::find() in condition; string::compare() would be faster. [stlIfStrFind]
[core/chemical/GlobalResidueTypeSet.cc:773]: (performance) Inefficient usage of string::find() in condition; string::compare() would be faster. [stlIfStrFind]
[core/chemical/IdealBondLengthSet.cc:139]: (performance) Inefficient usage of string::find() in condition; string::compare() would be faster. [stlIfStrFind]
[core/chemical/MMAtomTypeSet.cc:92]: (performance) Inefficient usage of string::find() in condition; string::compare() would be faster. [stlIfStrFind]
[core/chemical/ResidueTypeSelector.hh:576]: (performance) Function parameter 'property' should be passed by reference. [passedByValue]
[core/chemical/gasteiger/GasteigerAtomTypeSet.hh:55]: (warning) The class 'GasteigerAtomTypeSet' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/chemical/orbitals/OrbitalTypeSet.cc:112]: (performance) Inefficient usage of string::find() in condition; string::compare() would be faster. [stlIfStrFind]
[core/chemical/sdf/MolFileIOData.cc:642]: (performance) Function parameter 'label' should be passed by reference. [passedByValue]
[core/chemical/sdf/MolFileIOData.hh:147]: (performance) Function parameter 'name' should be passed by reference. [passedByValue]
[core/conformation/parametric/BooleanValuedParameter.hh:50]: (warning) The class 'BooleanValuedParameter' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/conformation/parametric/Parameters.hh:52]: (warning) The class 'Parameters' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/conformation/parametric/ParametrizationCalculator.hh:86]: (warning) The class 'ParametrizationCalculator' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/conformation/parametric/RealValuedParameter.hh:63]: (warning) The class 'RealValuedParameter' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/conformation/parametric/RealVectorValuedParameter.hh:50]: (warning) The class 'RealVectorValuedParameter' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/conformation/parametric/SizeValuedParameter.hh:50]: (warning) The class 'SizeValuedParameter' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/conformation/parametric/SizeVectorValuedParameter.hh:50]: (warning) The class 'SizeVectorValuedParameter' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/conformation/symmetry/SymSlideInfo.cc:58]: (performance) Function parameter 'SlideCriteriaVal' should be passed by reference. [passedByValue]
[core/conformation/symmetry/SymSlideInfo.cc:63]: (performance) Function parameter 'slide_order' should be passed by reference. [passedByValue]
[core/conformation/symmetry/SymmData.hh:41]: (warning) The class 'SymmData' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/energy_methods/AARepeatEnergy.hh:48]: (warning) The class 'AARepeatEnergy' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/energy_methods/CovalentLabelingEnergy.hh:32]: (warning) The class 'CovalentLabelingEnergy' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/energy_methods/CovalentLabelingFAEnergy.hh:32]: (warning) The class 'CovalentLabelingFAEnergy' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/energy_methods/DNA_ReferenceEnergy.hh:41]: (warning) The class 'DNA_ReferenceEnergy' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/energy_methods/DumpTrajectoryEnergy.hh:57]: (warning) The class 'DumpTrajectoryEnergy' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/energy_methods/GenericBondedEnergy.hh:41]: (warning) The class 'GenericBondedEnergy' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/energy_methods/GoapEnergy.cc:151]: (warning) Member variable 'GoapEnergy::eval_res_' is not initialized in the constructor. [uninitMemberVar]
[core/energy_methods/GoapEnergy.cc:151]: (warning) Member variable 'GoapEnergy::xd_' is not initialized in the constructor. [uninitMemberVar]
[core/energy_methods/GoapEnergy.cc:151]: (warning) Member variable 'GoapEnergy::xn_' is not initialized in the constructor. [uninitMemberVar]
[core/energy_methods/GoapEnergy.hh:93]: (warning) The class 'GoapEnergy' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/energy_methods/MissingEnergy.hh:78]: (style) Unused private function: 'MissingEnergy::version' [unusedPrivateFunction]
[core/energy_methods/OccludedHbondSolEnergy.hh:45]: (warning) The class 'OccludedHbondSolEnergy' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/energy_methods/OccludedHbondSolEnergy_onebody.hh:42]: (warning) The class 'OccludedHbondSolEnergy_onebody' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/energy_methods/RNA_PartitionEnergy.hh:123]: (style) Unused private function: 'RNA_PartitionEnergy::version' [unusedPrivateFunction]
[core/energy_methods/RNA_PartitionEnergy.hh:42]: (warning) The class 'RNA_PartitionEnergy' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/energy_methods/RingClosureEnergy.hh:35]: (warning) The class 'RingClosureEnergy' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/fragment/ConstantLengthFragSet.cc:65]: (performance) Function parameter 'filename' should be passed by reference. [passedByValue]
[core/fragment/FragCache.hh:235]: (performance) Function parameter 'tag' should be passed by reference. [passedByValue]
[core/fragment/FragCache.hh:244]: (performance) Function parameter 'tag' should be passed by reference. [passedByValue]
[core/fragment/rna/RNA_FragmentHomologyExclusion.hh:26]: (warning) The class 'RNA_FragmentHomologyExclusion' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/id/NamedStubID.cc:51]: (performance) Function parameter 'a3' should be passed by reference. [passedByValue]
[core/import_pose/PDBSilentStruct.hh:109]: (performance) Function parameter 'new_sfr' should be passed by reference. [passedByValue]
[core/import_pose/pose_stream/ExtendedPoseInputStream.hh:35]: (performance) Function parameter 'sequence' should be passed by reference. [passedByValue]
[core/io/CrystInfo.hh:62]: (performance) Function parameter 'spacegroupin' should be passed by reference. [passedByValue]
[core/io/HeaderInformation.hh:51]: (warning) The class 'HeaderInformation' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/io/nmr/util.cc:312]: (error) Array index -1 is out of bounds. [negativeContainerIndex]
[core/io/raw_data/DecoyFileData.hh:37]: (performance) Function parameter 'filename' should be passed by reference. [passedByValue]
[core/io/raw_data/DisulfideFile.hh:78]: (performance) Function parameter 'filename' should be passed by reference. [passedByValue]
[core/io/raw_data/RawFileData.hh:131]: (warning) The class 'const_iterator' has 'operator=' but lack of 'copy constructor'. [copyCtorAndEqOperator]
[core/io/raw_data/RawFileData.hh:85]: (warning) The class 'iterator' has 'operator=' but lack of 'copy constructor'. [copyCtorAndEqOperator]
[core/io/raw_data/RawStruct.hh:101]: (performance) Function parameter 'sequence' should be passed by reference. [passedByValue]
[core/io/raw_data/RawStruct.hh:96]: (performance) Function parameter 'tag' should be passed by reference. [passedByValue]
[core/io/raw_data/ScoreFileData.hh:38]: (performance) Function parameter 'filename' should be passed by reference. [passedByValue]
[core/io/raw_data/ScoreStructText.cc:35]: (performance) Function parameter 'tag' should be passed by reference. [passedByValue]
[core/io/silent/BinarySilentStruct.hh:152]: (performance) Function parameter 'f' should be passed by reference. [passedByValue]
[core/io/silent/ProteinSilentStruct.hh:50]: (performance) Function parameter 'tag' should be passed by reference. [passedByValue]
[core/io/silent/RigidBodySilentStruct.cc:236]: (warning) Member variable 'RigidBodySilentStruct::write_fold_tree_' is not assigned a value in 'RigidBodySilentStruct::operator='. [operatorEqVarError]
[core/io/silent/RigidBodySilentStruct.cc:48]: (performance) Function parameter 'tag' should be passed by reference. [passedByValue]
[core/io/silent/RigidBodySilentStruct.hh:41]: (warning) The class 'RigidBodySilentStruct' has 'operator=' but lack of 'copy constructor'. [copyCtorAndEqOperator]
[core/io/silent/RigidBodySilentStruct.hh:47]: (performance) Function parameter 'tag' should be passed by reference. [passedByValue]
[core/io/silent/ScoreFileSilentStruct.cc:68]: (performance) Function parameter 'tag' should be passed by reference. [passedByValue]
[core/io/silent/SharedSilentData.hh:58]: (performance) Function parameter 'sequence' should be passed by reference. [passedByValue]
[core/io/silent/SilentEnergy.hh:37]: (performance) Function parameter 'name' should be passed by reference. [passedByValue]
[core/io/silent/SilentEnergy.hh:50]: (performance) Function parameter 'name' should be passed by reference. [passedByValue]
[core/io/silent/SilentEnergy.hh:51]: (performance) Function parameter 'value' should be passed by reference. [passedByValue]
[core/io/silent/SilentFileData.hh:192]: (performance) Function parameter 'filename' should be passed by reference. [passedByValue]
[core/io/silent/SilentFileOptions.cc:357]: (performance) Function parameter 'setting' should be passed by reference. [passedByValue]
[core/io/silent/SilentFileOptions.cc:370]: (performance) Function parameter 'setting' should be passed by reference. [passedByValue]
[core/io/silent/SilentFileOptions.cc:396]: (performance) Function parameter 'setting' should be passed by reference. [passedByValue]
[core/io/silent/SilentFileOptions.cc:402]: (performance) Function parameter 'setting' should be passed by reference. [passedByValue]
[core/kinematics/FoldTree.cc:1804]: (style) Variable 'counter' is modified but its new value is never used. [unreadVariable]
[core/kinematics/FoldTree.hh:114]: (warning) Member variable 'FoldTree::cutpoint_' is not assigned a value in 'FoldTree::operator='. [operatorEqVarError]
[core/kinematics/FoldTree.hh:114]: (warning) Member variable 'FoldTree::cutpoint_map_' is not assigned a value in 'FoldTree::operator='. [operatorEqVarError]
[core/kinematics/FoldTree.hh:114]: (warning) Member variable 'FoldTree::edge_count' is not assigned a value in 'FoldTree::operator='. [operatorEqVarError]
[core/kinematics/FoldTree.hh:114]: (warning) Member variable 'FoldTree::is_jump_point_' is not assigned a value in 'FoldTree::operator='. [operatorEqVarError]
[core/kinematics/FoldTree.hh:114]: (warning) Member variable 'FoldTree::jump_edge_' is not assigned a value in 'FoldTree::operator='. [operatorEqVarError]
[core/kinematics/FoldTree.hh:114]: (warning) Member variable 'FoldTree::jump_edge_count' is not assigned a value in 'FoldTree::operator='. [operatorEqVarError]
[core/kinematics/FoldTree.hh:114]: (warning) Member variable 'FoldTree::jump_point_' is not assigned a value in 'FoldTree::operator='. [operatorEqVarError]
[core/kinematics/FoldTree.hh:114]: (warning) Member variable 'FoldTree::new_order' is not assigned a value in 'FoldTree::operator='. [operatorEqVarError]
[core/kinematics/ShortestPathInFoldTree.hh:55]: (warning) The class 'ShortestPathInFoldTree' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/optimization/LineMinimizer.cc:666]: (style) Variable 'step_count' is modified but its new value is never used. [unreadVariable]
[core/optimization/Minimizer.cc:504]: (style) Condition 'HOPT==1' is always false [knownConditionTrueFalse]
[core/optimization/Minimizer.cc:515]: (style) Condition 'HOPT==1' is always false [knownConditionTrueFalse]
[core/optimization/Minimizer.cc:519]: (style) Condition 'HOPT==1' is always false [knownConditionTrueFalse]
[core/optimization/Minimizer.cc:541]: (style) Condition 'HOPT==1' is always false [knownConditionTrueFalse]
[core/optimization/MinimizerOptions.cc:96]: (performance) Function parameter 'min_type_in' should be passed by reference. [passedByValue]
[core/optimization/ParticleSwarmMinimizer.cc:240]: (performance) Function parameter 'header' should be passed by reference. [passedByValue]
[core/pack/annealer/FixbbSimAnnealer.cc:231]: (style) Variable 'nsteps' is modified but its new value is never used. [unreadVariable]
[core/pack/dunbrack/ChiSet.hh:33]: (warning) The class 'ChiSet' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/pack/dunbrack/RotamericSingleResidueDunbrackLibraryParser.hh:39]: (warning) The class 'RotamericSingleResidueDunbrackLibraryParser' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/pack/dunbrack/cenrot/SingleResidueCenrotLibrary.hh:47]: (warning) The class 'CentroidRotamerSampleData' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/pack/guidance_scoreterms/buried_unsat_penalty/graph/BuriedUnsatPenaltyGraphContainer.hh:34]: (warning) The class 'BuriedUnsatPenaltyGraphContainer' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/pack/interaction_graph/LinearMemoryInteractionGraph.cc:746]: (style) Variable 'count_neighbs_with_higher_indices' is modified but its new value is never used. [unreadVariable]
[core/pack/rotamer_set/WaterAnchorInfo.cc:120]: (performance) Function parameter 'bonds' should be passed by reference. [passedByValue]
[core/pack/rotamer_set/WaterPackingInfo.hh:43]: (warning) The class 'WaterPackingInfo' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/pack/task/ResfileReader.hh:54]: (performance) Function parameter 'message' should be passed by reference. [passedByValue]
[core/pack/task/operation/DesignRestrictions.hh:87]: (warning) The class 'DesignRestrictions' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/pack/task/operation/TaskOperations.hh:129]: (warning) The class 'RestrictToResidueProperties' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/pack/task/operation/TaskOperations.hh:167]: (warning) The class 'ProhibitResidueProperties' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/pack/task/operation/TaskOperations.hh:394]: (warning) The class 'InitializeFromOptionCollection' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/pack/task/operation/TaskOperations.hh:542]: (warning) The class 'ReadResfile' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/pack/task/operation/TaskOperations.hh:55]: (warning) The class 'RestrictToSpecifiedBaseResidueTypes' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/pack/task/operation/TaskOperations.hh:712]: (warning) The class 'AppendRotamer' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/pack/task/operation/TaskOperations.hh:735]: (warning) The class 'AppendRotamerSet' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/pack/task/operation/TaskOperations.hh:826]: (warning) The class 'RestrictYSDesign' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/pack/task/operation/TaskOperations.hh:92]: (warning) The class 'ProhibitSpecifiedBaseResidueTypes' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/pose/PDBInfo.hh:550]: (performance) Function parameter 'crystinfoin' should be passed by reference. [passedByValue]
[core/pose/PDBInfo.hh:595]: (performance) Function parameter 'chain_sequences' should be passed by reference. [passedByValue]
[core/pose/full_model_info/FullModelInfo.hh:52]: (warning) The class 'FullModelInfo' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/pose/full_model_info/SubMotifInfo.hh:39]: (warning) The class 'SubMotifInfo' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/pose/metrics/simple_calculators/InterfaceDeltaEnergeticsCalculator.cc:79]: (performance) Variable 'score_types_to_ignore_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/pose/reference_pose/ReferencePoseSet.hh:58]: (warning) The class 'ReferencePoseSet' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/pose/rna/VDW_Grid.hh:43]: (warning) The class 'VDW_Grid' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/scoring/GenBornPotential.hh:262]: (warning) The class 'GenBornRotamerSetInfo' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/scoring/GenericBondedPotential.cc:155]: (style) The class 'BondOrderParser' does not have a constructor. [noConstructor]
[core/scoring/GenericBondedPotential.cc:332]: (performance) Function parameter 'input' should be passed by reference. [passedByValue]
[core/scoring/GenericBondedPotential.cc:415]: (performance) Function parameter 'keyword' should be passed by reference. [passedByValue]
[core/scoring/GenericBondedPotential.cc:967]: (style) Variable 'rsdtypename' is assigned a value that is never used. [unreadVariable]
[core/scoring/GenericBondedPotential.hh:137]: (performance) Function parameter 'torsion_type_in' should be passed by reference. [passedByValue]
[core/scoring/GenericBondedPotential.hh:261]: (performance) Function parameter 'atm1' should be passed by reference. [passedByValue]
[core/scoring/GenericBondedPotential.hh:261]: (performance) Function parameter 'atm2' should be passed by reference. [passedByValue]
[core/scoring/GenericBondedPotential.hh:263]: (performance) Function parameter 'atm3' should be passed by reference. [passedByValue]
[core/scoring/GenericBondedPotential.hh:263]: (performance) Function parameter 'atm4' should be passed by reference. [passedByValue]
[core/scoring/MinimizationGraph.cc:734]: (warning) Member variable 'MinimizationGraph::fixed_energies_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/PointWaterPotential.hh:41]: (performance) Function parameter 'name1_in' should be passed by reference. [passedByValue]
[core/scoring/PointWaterPotential.hh:41]: (performance) Function parameter 'name2_in' should be passed by reference. [passedByValue]
[core/scoring/Ramachandran.cc:78]: (performance) Function parameter 'res' should be passed by reference. [passedByValue]
[core/scoring/Ramachandran2B.cc:64]: (performance) Function parameter 'res' should be passed by reference. [passedByValue]
[core/scoring/SS_Killhairpins_Info.hh:48]: (warning) The struct 'Hairpin' has 'operator=' but lack of 'copy constructor'. [copyCtorAndEqOperator]
[core/scoring/SmoothEnvPairPotential.hh:42]: (warning) The class 'core :: scoring :: SigmoidWeightedCenList < Real >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/scoring/SplitUnfoldedTwoBodyPotential.cc:46]: (performance) Function parameter 'filename' should be passed by reference. [passedByValue]
[core/scoring/SplitUnfoldedTwoBodyPotential.cc:51]: (performance) Function parameter 'atom_type_label_name' should be passed by reference. [passedByValue]
[core/scoring/SplitUnfoldedTwoBodyPotential.cc:51]: (performance) Function parameter 'filename' should be passed by reference. [passedByValue]
[core/scoring/aa_composition_energy/AACompositionEnergySetup.hh:248]: (warning) The class 'AACompositionEnergySetup' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/scoring/aa_composition_energy/AACompositionEnergySetup.hh:75]: (warning) The class 'AACompositionPropertiesSet' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/scoring/carbon_hbonds/CarbonHBondEnergy.hh:43]: (warning) The class 'CarbonHBondEnergy' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/scoring/constraints/BoundConstraint.cc:183]: (performance) Function parameter 'type' should be passed by reference. [passedByValue]
[core/scoring/constraints/BoundConstraint.cc:247]: (performance) Function parameter 'type' should be passed by reference. [passedByValue]
[core/scoring/etable/EtableOptions.cc:51]: (warning) Member variable 'EtableOptions::analytic_etable_evaluation' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/etable/EtableOptions.cc:51]: (warning) Member variable 'EtableOptions::bins_per_A2' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/etable/EtableOptions.cc:51]: (warning) Member variable 'EtableOptions::enlarge_h_lj_wdepth' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/etable/EtableOptions.cc:51]: (warning) Member variable 'EtableOptions::fa_hatr' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/etable/EtableOptions.cc:51]: (warning) Member variable 'EtableOptions::no_lk_polar_desolvation' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/etable/EtableOptions.cc:51]: (warning) Member variable 'EtableOptions::proline_N_is_lk_nonpolar' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/etable/EtableOptions.cc:51]: (warning) Member variable 'EtableOptions::analytic_membetable_evaluation' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/facts/FACTSPose.hh:44]: (warning) The class 'FACTSPoseInfo' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/scoring/facts/FACTSResidue.hh:287]: (warning) The class 'FACTSRotamerSetInfo' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/scoring/fiber_diffraction/FiberDiffraction.cc:163]: (performance) Function parameter 'layer_lines' should be passed by reference. [passedByValue]
[core/scoring/hbonds/HBondDatabase.cc:108]: (performance) Variable 'params_database_tag_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/hbonds/graph/HBondGraph.hh:197]: (warning) The class 'HBondEdge' has 'operator=' but lack of 'copy constructor'. [copyCtorAndEqOperator]
[core/scoring/lkball/LK_BallInfo.hh:302]: (warning) The class 'LKB_ResiduesInfo' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/scoring/methods/CartBondedParameters.hh:113]: (performance) Function parameter 'tag_in' should be passed by reference. [passedByValue]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::approximate_buried_unsat_penalty_assume_const_backbone_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::approximate_buried_unsat_penalty_natural_corrections1_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::arg_cation_pi_his_can_be_pi_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::cartbonded_linear_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::cartbonded_skip_cutpoints_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::count_pair_full_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::count_pair_hybrid_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::dump_trajectory_gz_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::elec_no_dis_dep_die_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::elec_sigmoidal_die_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::envsmooth_zero_negatives_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::eval_intrares_elec_ST_only_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::exclude_DNA_DNA_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::exclude_RNA_RNA_fa_elec_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::exclude_RNA_protein_fa_elec_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::exclude_intra_res_protein_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::exclude_monomer_fa_elec_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::exclude_protein_protein_fa_elec_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::fa_stack_base_all_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::genbonded_score_full_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::genbonded_score_hybrid_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::grp_cpfxn_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::grpelec_context_dependent_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::grpelec_fade_hbond_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::loop_close_use_6D_potential_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::put_intra_into_total_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::smooth_fa_elec_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::symmetric_gly_tables_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::use_gen_kirkwood_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::use_polarization_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::voids_penalty_energy_disabled_except_during_packing_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:73]: (warning) Member variable 'EnergyMethodOptions::approximate_buried_unsat_penalty_lys_ok_with_1_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/methods/EnergyMethodOptions.cc:745]: (performance) Function parameter 'setting' should be passed by reference. [passedByValue]
[core/scoring/methods/EnergyMethodOptions.cc:800]: (performance) Function parameter 'setting' should be passed by reference. [passedByValue]
[core/scoring/mhc_epitope_energy/MHCEpitopeEnergySetup.cc:207]: (style) Variable 'errmsg' is assigned a value that is never used. [unreadVariable]
[core/scoring/mhc_epitope_energy/MHCEpitopeEnergySetup.hh:122]: (performance) Function parameter 'peptide' should be passed by reference. [passedByValue]
[core/scoring/sc/ContactMolecularSurfaceCalculator.cc:146] -> [core/scoring/sc/ContactMolecularSurfaceCalculator.cc:147]: (style) Variable 'neighbor' is reassigned a value before the old one has been used. [redundantAssignment]
[core/scoring/sc/ShapeComplementarityCalculator.cc:351] -> [core/scoring/sc/ShapeComplementarityCalculator.cc:360]: (style) Variable 'neighbor' is reassigned a value before the old one has been used. [redundantAssignment]
[core/select/jump_selector/AndJumpSelector.hh:41]: (warning) The class 'AndJumpSelector' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/select/jump_selector/NotJumpSelector.hh:45]: (warning) The class 'NotJumpSelector' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/select/jump_selector/OrJumpSelector.hh:42]: (warning) The class 'OrJumpSelector' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/select/residue_selector/AndResidueSelector.hh:46]: (warning) The class 'AndResidueSelector' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/select/residue_selector/InterGroupInterfaceByVectorSelector.hh:49]: (warning) The class 'InterGroupInterfaceByVectorSelector' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/select/residue_selector/JumpDownstreamSelector.hh:45]: (warning) The class 'JumpDownstreamSelector' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/select/residue_selector/JumpUpstreamSelector.hh:45]: (warning) The class 'JumpUpstreamSelector' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/select/residue_selector/LayerSelector.hh:48]: (warning) The class 'LayerSelector' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/select/residue_selector/NeighborhoodResidueSelector.cc:96]: (warning) Member variable 'NeighborhoodResidueSelector::atom_names_for_distance_measure_' is not initialized in the constructor. [uninitMemberVar]
[core/select/residue_selector/NeighborhoodResidueSelector.hh:51]: (warning) The class 'NeighborhoodResidueSelector' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/select/residue_selector/NotResidueSelector.hh:45]: (warning) The class 'NotResidueSelector' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/select/residue_selector/OrResidueSelector.hh:47]: (warning) The class 'OrResidueSelector' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/select/residue_selector/RandomGlycanFoliageSelector.hh:44]: (warning) The class 'RandomGlycanFoliageSelector' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/select/residue_selector/ResidueInSequenceMotifSelector.hh:56]: (performance) Function parameter 'regex' should be passed by reference. [passedByValue]
[core/select/residue_selector/ResiduePDBInfoHasLabelSelector.hh:39]: (warning) The class 'ResiduePDBInfoHasLabelSelector' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/sequence/ABEGOManager.hh:167]: (warning) The class 'ABEGOManager' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/sequence/DP_Matrix.hh:39]: (warning) The class 'Cell' has 'operator=' but lack of 'copy constructor'. [copyCtorAndEqOperator]
[core/sequence/DP_Matrix.hh:67]: (warning) Member variable 'Cell::coords_' is not assigned a value in 'Cell::operator='. [operatorEqVarError]
[core/sequence/MatrixScoringScheme.cc:104]: (performance) Function parameter 'name' should be passed by reference. [passedByValue]
[core/sequence/ScoringScheme.cc:74]: (performance) Function parameter 'new_type' should be passed by reference. [passedByValue]
[core/sequence/Sequence.cc:84]: (performance) Function parameter 'new_id' should be passed by reference. [passedByValue]
[core/sequence/SequenceAlignment.cc:74]: (performance) Function parameter 'new_scores' should be passed by reference. [passedByValue]
[core/simple_metrics/CompositeRealMetric.cc:51]: (performance) Function parameter 'prefix' should be passed by reference. [passedByValue]
[core/simple_metrics/CompositeRealMetric.cc:51]: (performance) Function parameter 'suffix' should be passed by reference. [passedByValue]
[core/simple_metrics/CompositeRealMetric.cc:70]: (performance) Function parameter 'prefix' should be passed by reference. [passedByValue]
[core/simple_metrics/CompositeRealMetric.cc:70]: (performance) Function parameter 'suffix' should be passed by reference. [passedByValue]
[core/simple_metrics/CompositeStringMetric.cc:51]: (performance) Function parameter 'prefix' should be passed by reference. [passedByValue]
[core/simple_metrics/CompositeStringMetric.cc:51]: (performance) Function parameter 'suffix' should be passed by reference. [passedByValue]
[core/simple_metrics/CompositeStringMetric.cc:70]: (performance) Function parameter 'prefix' should be passed by reference. [passedByValue]
[core/simple_metrics/CompositeStringMetric.cc:70]: (performance) Function parameter 'suffix' should be passed by reference. [passedByValue]
[core/simple_metrics/PerResidueRealMetric.cc:102]: (performance) Function parameter 'prefix' should be passed by reference. [passedByValue]
[core/simple_metrics/PerResidueRealMetric.cc:103]: (performance) Function parameter 'suffix' should be passed by reference. [passedByValue]
[core/simple_metrics/PerResidueRealMetric.cc:125]: (performance) Function parameter 'prefix' should be passed by reference. [passedByValue]
[core/simple_metrics/PerResidueRealMetric.cc:125]: (performance) Function parameter 'suffix' should be passed by reference. [passedByValue]
[core/simple_metrics/PerResidueRealMetric.hh:54]: (warning) The class 'PerResidueRealMetric' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/simple_metrics/PerResidueStringMetric.cc:110]: (performance) Function parameter 'prefix' should be passed by reference. [passedByValue]
[core/simple_metrics/PerResidueStringMetric.cc:110]: (performance) Function parameter 'suffix' should be passed by reference. [passedByValue]
[core/simple_metrics/PerResidueStringMetric.cc:91]: (performance) Function parameter 'prefix' should be passed by reference. [passedByValue]
[core/simple_metrics/PerResidueStringMetric.cc:91]: (performance) Function parameter 'suffix' should be passed by reference. [passedByValue]
[core/simple_metrics/PerResidueStringMetric.hh:52]: (warning) The class 'PerResidueStringMetric' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/simple_metrics/RealMetric.cc:51]: (performance) Function parameter 'prefix' should be passed by reference. [passedByValue]
[core/simple_metrics/RealMetric.cc:51]: (performance) Function parameter 'suffix' should be passed by reference. [passedByValue]
[core/simple_metrics/RealMetric.cc:67]: (performance) Function parameter 'prefix' should be passed by reference. [passedByValue]
[core/simple_metrics/RealMetric.cc:67]: (performance) Function parameter 'suffix' should be passed by reference. [passedByValue]
[core/simple_metrics/SimpleMetric.hh:53]: (warning) The class 'SimpleMetric' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/simple_metrics/StringMetric.cc:51]: (performance) Function parameter 'prefix' should be passed by reference. [passedByValue]
[core/simple_metrics/StringMetric.cc:51]: (performance) Function parameter 'suffix' should be passed by reference. [passedByValue]
[core/simple_metrics/StringMetric.cc:70]: (performance) Function parameter 'prefix' should be passed by reference. [passedByValue]
[core/simple_metrics/StringMetric.cc:70]: (performance) Function parameter 'suffix' should be passed by reference. [passedByValue]
[core/simple_metrics/metrics/ResidueSummaryMetric.cc:117]: (performance) Function parameter 'prefix' should be passed by reference. [passedByValue]
[core/simple_metrics/metrics/ResidueSummaryMetric.cc:117]: (performance) Function parameter 'suffix' should be passed by reference. [passedByValue]
[core/simple_metrics/metrics/SecondaryStructureMetric.hh:33]: (warning) The class 'SecondaryStructureMetric' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/simple_metrics/metrics/SelectedResidueCountMetric.hh:32]: (warning) The class 'SelectedResidueCountMetric' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/simple_metrics/metrics/SelectedResiduesMetric.hh:32]: (warning) The class 'SelectedResiduesMetric' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/simple_metrics/metrics/SelectedResiduesPyMOLMetric.hh:32]: (warning) The class 'SelectedResiduesPyMOLMetric' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/simple_metrics/metrics/SequenceMetric.hh:47]: (warning) The class 'SequenceMetric' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/simple_metrics/metrics/TimingProfileMetric.hh:36]: (warning) The class 'TimingProfileMetric' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -1 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -10 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -11 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -12 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -13 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -14 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -15 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -16 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -17 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -18 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -19 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -2 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -20 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -21 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -22 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -23 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -24 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -25 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -26 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -27 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -28 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -29 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -3 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -30 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -31 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -32 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -33 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -34 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -35 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -36 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -37 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -38 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -39 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -4 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -40 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -41 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -42 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -43 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -44 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -45 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -46 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -47 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -48 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -5 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -6 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -7 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -8 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , -9 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , 0 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , 1 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < Real , 2 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 1 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 10 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 100 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 11 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 12 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 13 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 14 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 15 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 16 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 17 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 18 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 19 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 2 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 20 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 21 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 22 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 23 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 24 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 25 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 26 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 27 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 28 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 29 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 3 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 30 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 31 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 32 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 33 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 34 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 35 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 36 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 37 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 38 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 39 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 4 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 40 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 41 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 42 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 43 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 44 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 45 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 46 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 47 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 48 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 49 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 5 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 50 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 51 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 52 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 53 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 54 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 55 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 56 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 57 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 58 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 59 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 6 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 60 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 61 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 62 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 63 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 64 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 65 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 66 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 67 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 68 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 69 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 7 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 70 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 71 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 72 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 73 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 74 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 75 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 76 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 77 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 78 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 79 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 8 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 80 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 81 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 82 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 83 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 84 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 85 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 86 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 87 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 88 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 89 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 9 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 90 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 91 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 92 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 93 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 94 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 95 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 96 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 97 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 98 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathNTensor.hh:59]: (warning) The class 'numeric :: MathNTensor < T , N - 99 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/MathVector.hh:262]: (warning) 'operator=' should check for assignment to self to avoid problems with dynamic memory. [operatorEqToSelf]
[numeric/MultiDimensionalHistogram.hh:289]: (performance) Function parameter 'label' should be passed by reference. [passedByValue]
[numeric/agglomerative_hierarchical_clustering.cc:101]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[numeric/expression_parser/Arithmetic.cc:134]: (performance) Function parameter 'name' should be passed by reference. [passedByValue]
[numeric/expression_parser/Arithmetic.cc:160]: (performance) Function parameter 'name' should be passed by reference. [passedByValue]
[numeric/expression_parser/Arithmetic.cc:1974]: (performance) Function parameter 'name' should be passed by reference. [passedByValue]
[numeric/expression_parser/Arithmetic.cc:1980]: (performance) Function parameter 'name' should be passed by reference. [passedByValue]
[numeric/geometry/hashing/xyzStripeHash.hh:162]: (style) C-style pointer casting [cstyleCast]
[numeric/geometry/hashing/xyzStripeHash.hh:193]: (style) C-style pointer casting [cstyleCast]
[numeric/geometry/hashing/xyzStripeHashWithMeta.hh:66]: (warning) Member variable 'numeric :: geometry :: hashing :: xyzStripeHashWithMeta < float >::xmx_' is not initialized in the constructor. [uninitMemberVar]
[numeric/geometry/hashing/xyzStripeHashWithMeta.hh:66]: (warning) Member variable 'numeric :: geometry :: hashing :: xyzStripeHashWithMeta < float >::ymx_' is not initialized in the constructor. [uninitMemberVar]
[numeric/geometry/hashing/xyzStripeHashWithMeta.hh:66]: (warning) Member variable 'numeric :: geometry :: hashing :: xyzStripeHashWithMeta < float >::zmx_' is not initialized in the constructor. [uninitMemberVar]
[numeric/interpolation/spline/PolycubicSpline.hh:114]: (error) Shifting by a negative value is undefined behaviour [shiftNegative]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'PolycubicSpline' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -1 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -10 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -11 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -12 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -13 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -14 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -15 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -16 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -17 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -18 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -19 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -2 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -20 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -21 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -22 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -23 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -24 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -25 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -26 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -27 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -28 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -29 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -3 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -30 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -31 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -32 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -33 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -34 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -35 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -36 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -37 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -38 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -39 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -4 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -40 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -41 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -42 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -43 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -44 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -45 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -46 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -47 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -48 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -49 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -5 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -50 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -51 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -52 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -53 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -54 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -55 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -56 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -57 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -58 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -59 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -6 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -60 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -61 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -62 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -63 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -64 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -65 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -66 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -67 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -68 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -69 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -7 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -70 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -71 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -72 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -73 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -74 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -75 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -76 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -77 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -78 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -79 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -8 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -80 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -81 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -82 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -83 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -84 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -85 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -86 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -87 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -88 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -89 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -9 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -90 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < -91 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < 0 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < 1 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < 2 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < 3 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < 4 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < 5 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < 6 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < 7 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < 8 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.hh:46]: (warning) The class 'numeric :: interpolation :: spline :: PolycubicSpline < 9 >' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/interpolation/spline/PolycubicSpline.tmpl.hh:155]: (error) Shifting by a negative value is undefined behaviour [shiftNegative]
[numeric/interpolation/spline/PolycubicSpline.tmpl.hh:354]: (error) Shifting by a negative value is undefined behaviour [shiftNegative]
[numeric/interpolation/spline/PolycubicSpline.tmpl.hh:366]: (error) Shifting by a negative value is undefined behaviour [shiftNegative]
[numeric/interpolation/spline/PolycubicSpline.tmpl.hh:448]: (error) Shifting by a negative value is undefined behaviour [shiftNegative]
[numeric/interpolation/spline/PolycubicSpline.tmpl.hh:468]: (error) Shifting by a negative value is undefined behaviour [shiftNegative]
[numeric/interpolation/spline/PolycubicSpline.tmpl.hh:88]: (error) Shifting by a negative value is undefined behaviour [shiftNegative]
[numeric/linear_algebra/EllipseParameters.hh:31]: (warning) The class 'EllipseParameters' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/polynomial.hh:39]: (warning) The class 'Polynomial_1d' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[numeric/random/random.cc:169]: (portability) Casting from double* to integer* is not portable due to different binary data representations on different platforms. [invalidPointerCast]
[numeric/random/random.cc:180]: (portability) Casting between integer* and double* which have an incompatible binary data representation. [invalidPointerCast]
[protocols/abinitio/HedgeArchive.cc:46]: (performance) Function parameter 'name' should be passed by reference. [passedByValue]
[protocols/abinitio/Protocol.hh:116]: (performance) Function parameter 'str' should be passed by reference. [passedByValue]
[protocols/analysis/LoopAnalyzerFilter.hh:36]: (warning) The class 'LoopAnalyzerFilter' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/analysis/burial_metrics/PolarGroupBurialPyMolStringMetric.hh:33]: (warning) The class 'PolarGroupBurialPyMolStringMetric' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/analysis/simple_metrics/RunSimpleMetricsMover.hh:38]: (warning) The class 'RunSimpleMetricsMover' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/antibody/database/CDRSetOptions.hh:34]: (warning) The class 'CDRSetOptions' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/antibody/database/CDRSetOptionsParser.hh:35]: (warning) The class 'CDRSetOptionsParser' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/antibody/design/CDRGraftDesignOptions.hh:149]: (warning) The class 'CDRGraftDesignOptionsParser' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/antibody/design/CDRSeqDesignOptions.cc:321] -> [protocols/antibody/design/CDRSeqDesignOptions.cc:321]: (style) Same expression on both sides of '||'. [duplicateExpression]
[protocols/antibody/design/CDRSeqDesignOptions.cc:65]: (warning) Member variable 'CDRSeqDesignOptions::disallow_aa_' is not initialized in the constructor. [uninitMemberVar]
[protocols/antibody/design/CDRSeqDesignOptions.hh:116]: (warning) The class 'CDRSeqDesignOptionsParser' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/antibody/design/CDRSeqDesignOptions.hh:37]: (warning) The class 'CDRSeqDesignOptions' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/antibody/grafting/antibody_sequence.hh:117]: (performance) Function parameter 'heavy_' should be passed by reference. [passedByValue]
[protocols/antibody/grafting/antibody_sequence.hh:117]: (performance) Function parameter 'light_' should be passed by reference. [passedByValue]
[protocols/antibody/grafting/antibody_sequence.hh:90]: (performance) Function parameter 'sequence_' should be passed by reference. [passedByValue]
[protocols/backbone_moves/RandomizeBBByRamaPrePro.hh:36]: (warning) The class 'RandomizeBBByRamaPrePro' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/calc_taskop_filters/RotamerBoltzmannWeight2.hh:54]: (warning) The class 'RotamerBoltzmannWeight2' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/calc_taskop_movers/CreateSequenceMotifMover.cc:127]: (performance) Function parameter 'motif' should be passed by reference. [passedByValue]
[protocols/calc_taskop_movers/CreateSequenceMotifMover.hh:67]: (warning) The class 'CreateSequenceMotifMover' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/canonical_sampling/mc_convergence_checks/HierarchicalLevel.cc:240]: (performance) Possible inefficient checking for 'pool_cache_' emptiness. [stlSize]
[protocols/canonical_sampling/mc_convergence_checks/HierarchicalLevel.cc:258]: (performance) Possible inefficient checking for 'pool_cache_' emptiness. [stlSize]
[protocols/canonical_sampling/mc_convergence_checks/Pool_ConvergenceCheck.cc:137]: (performance) Function parameter 'new_tag' should be passed by reference. [passedByValue]
[protocols/canonical_sampling/mc_convergence_checks/Pool_ConvergenceCheck.hh:66]: (performance) Function parameter 'silent_file' should be passed by reference. [passedByValue]
[protocols/carbohydrates/CreateGlycanSequonMover.hh:58]: (warning) The class 'CreateGlycanSequonMover' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/cluster/cluster.hh:268]: (performance) Function parameter 'loop_def' should be passed by reference. [passedByValue]
[protocols/comparative_modeling/Align_RmsdEvaluator.cc:48]: (performance) Function parameter 'tag' should be passed by reference. [passedByValue]
[protocols/comparative_modeling/Align_RotamerEvaluator.cc:42]: (performance) Function parameter 'tag' should be passed by reference. [passedByValue]
[protocols/comparative_modeling/LoopRelaxMover.hh:113]: (performance) Function parameter 'val' should be passed by reference. [passedByValue]
[protocols/comparative_modeling/LoopRelaxMover.hh:117]: (performance) Function parameter 'val' should be passed by reference. [passedByValue]
[protocols/comparative_modeling/LoopRelaxMover.hh:121]: (performance) Function parameter 'val' should be passed by reference. [passedByValue]
[protocols/comparative_modeling/LoopRelaxMover.hh:125]: (performance) Function parameter 'val' should be passed by reference. [passedByValue]
[protocols/contact_map/ContactMap.hh:70]: (performance) Function parameter 'prefix' should be passed by reference. [passedByValue]
[protocols/cyclic_peptide/OversaturatedHbondAcceptorFilter.hh:36]: (warning) The class 'OversaturatedHbondAcceptorFilter' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/ddg/ddGData.cc:60]: (performance) Function parameter 'filename' should be passed by reference. [passedByValue]
[protocols/denovo_design/architects/CompoundArchitect.cc:68]: (performance) Function parameter 'tag_name' should be passed by reference. [passedByValue]
[protocols/denovo_design/architects/CompoundArchitect.cc:82]: (performance) Function parameter 'tag_name' should be passed by reference. [passedByValue]
[protocols/denovo_design/components/StructureDataPerturber.hh:172]: (warning) The class 'CompoundPerturber' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/denovo_design/filters/SSPredictionFilter.cc:234]: (performance) Function parameter 'secstruct' should be passed by reference. [passedByValue]
[protocols/dna/DnaChains.hh:58]: (warning) The class 'DnaChains' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/docking/DockTaskFactory.cc:68]: (warning) Member variable 'DockTaskFactory::additional_task_operations_' is not initialized in the constructor. [uninitMemberVar]
[protocols/docking/DockTaskFactory.hh:45]: (warning) The class 'DockTaskFactory' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/docking/DockingEnsemble.cc:196]: (performance) Function parameter 'partner_num' should be passed by reference. [passedByValue]
[protocols/docking/DockingEnsemble.cc:219]: (performance) Function parameter 'partner_num' should be passed by reference. [passedByValue]
[protocols/docking/DockingEnsemblePrepackProtocol.hh:66]: (performance) Function parameter 'ensemble1' should be passed by reference. [passedByValue]
[protocols/docking/DockingEnsemblePrepackProtocol.hh:67]: (performance) Function parameter 'ensemble2' should be passed by reference. [passedByValue]
[protocols/docking/DockingHighRes.cc:109]: (warning) Member variable 'DockingHighRes::ignore_default_task_' is not initialized in the constructor. [uninitMemberVar]
[protocols/docking/DockingHighRes.hh:111]: (performance) Function parameter 'partners' should be passed by reference. [passedByValue]
[protocols/docking/DockingHighRes.hh:48]: (warning) The class 'DockingHighRes' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/environment/claims/ClaimStrength.hh:38]: (warning) The class 'ClaimStrength' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/enzdes/EnzFilters.hh:348]: (performance) Function parameter 'setting' should be passed by reference. [passedByValue]
[protocols/evaluation/AlignEvaluator.cc:43]: (performance) Function parameter 'tag' should be passed by reference. [passedByValue]
[protocols/features/BetaTurnDetection.hh:44]: (warning) The class 'BetaTurnDetection' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/features/BetaTurnDetectionFeatures.hh:36]: (warning) The class 'BetaTurnDetectionFeatures' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/features/DatabaseFilters.cc:90]: (performance) Function parameter 'current_input' should be passed by reference. [passedByValue]
[protocols/features/HelixCapFeatures.cc:140]: (performance) Function parameter 'dssp_code' should be passed by reference. [passedByValue]
[protocols/features/Report.hh:41]: (warning) The class 'Report' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/features/SecondaryStructureSegmentFeatures.cc:134]: (performance) Function parameter 'dssp_code' should be passed by reference. [passedByValue]
[protocols/features/SecondaryStructureSegmentFeatures.cc:144]: (performance) Function parameter 'dssp_code' should be passed by reference. [passedByValue]
[protocols/features/SimpleMetricFeatures.hh:57]: (performance) Function parameter 'r_value' should be passed by reference. [passedByValue]
[protocols/features/TrajectoryReportToDB.hh:41]: (warning) The class 'TrajectoryReportToDB' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/features/strand_assembly/StrandFragment.cc:88]: (performance) Function parameter 'pdb_source_' should be passed by reference. [passedByValue]
[protocols/features/util.cc:150]: (style) Condition 'rank!=0' is always false [knownConditionTrueFalse]
[protocols/features/util.cc:216]: (style) Condition 'rank!=0' is always false [knownConditionTrueFalse]
[protocols/filters/CalculatorFilter.cc:93]: (performance) Function parameter 'report_key' should be passed by reference. [passedByValue]
[protocols/filters/CalculatorFilter.hh:37]: (warning) The class 'CalculatorFilter' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/filters/VectorPoseFilter.cc:35]: (warning) Member variable 'VectorPoseFilter::poses_' is not initialized in the constructor. [uninitMemberVar]
[protocols/filters/VectorPoseFilter.hh:32]: (warning) The class 'VectorPoseFilter' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/fldsgn/filters/HSSTripletFilter.hh:46]: (warning) The class 'HSSTripletFilter' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/fldsgn/filters/HelixPairingFilter.hh:47]: (warning) The class 'HelixPairingFilter' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/fldsgn/potentials/sspot/NatbiasHelicesSheetPotential.cc:63]: (warning) Member variable 'NatbiasHelicesSheetPotential::hh_scores_' is not initialized in the constructor. [uninitMemberVar]
[protocols/fldsgn/potentials/sspot/NatbiasHelicesSheetPotential.cc:63]: (warning) Member variable 'NatbiasHelicesSheetPotential::hs_scores_' is not initialized in the constructor. [uninitMemberVar]
[protocols/fldsgn/potentials/sspot/NatbiasHelicesSheetPotential.hh:40]: (warning) The class 'NatbiasHelicesSheetPotential' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/fldsgn/potentials/sspot/NatbiasHelixPairPotential.cc:66]: (warning) Member variable 'NatbiasHelixPairPotential::hh_scores_' is not initialized in the constructor. [uninitMemberVar]
[protocols/fldsgn/potentials/sspot/NatbiasHelixPairPotential.hh:35]: (warning) The class 'NatbiasHelixPairPotential' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/fldsgn/topology/BetaAlphaBetaMotif.hh:167]: (warning) The class 'BetaAlphaBetaMotifSet' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/fldsgn/topology/BetaAlphaBetaMotif.hh:38]: (warning) The class 'BetaAlphaBetaMotif' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/fldsgn/topology/HSSTriplet.cc:83]: (warning) Member variable 'HSSTriplet::geometry_is_initialized_' is not initialized in the constructor. [uninitMemberVar]
[protocols/fldsgn/topology/HSSTriplet.cc:83]: (warning) Member variable 'HSSTriplet::left_handed_' is not initialized in the constructor. [uninitMemberVar]
[protocols/fldsgn/topology/HSSTriplet.hh:241]: (warning) The class 'HSSTripletSet' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/fldsgn/topology/HSSTriplet.hh:54]: (warning) The class 'HSSTriplet' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/fldsgn/topology/HelixPairing.hh:148]: (warning) The class 'HelixPairingSet' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/fldsgn/topology/HelixPairing.hh:35]: (warning) The class 'HelixPairing' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/flexpep_docking/FlexPepDockingFlags.hh:96]: (performance) Function parameter 'ch' should be passed by reference. [passedByValue]
[protocols/flxbb/DesignTask.cc:82]: (warning) Member variable 'DesignTask::task_operations_' is not initialized in the constructor. [uninitMemberVar]
[protocols/flxbb/DesignTask.hh:44]: (warning) The class 'DesignTask' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/forge/remodel/RemodelConstraintGenerator.hh:47]: (warning) The class 'RemodelConstraintGenerator' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/frag_picker/CSTalosIO.hh:40]: (performance) Function parameter 'file_name' should be passed by reference. [passedByValue]
[protocols/frag_picker/FragmentPicker.hh:103]: (performance) Function parameter 'fragment_score_manager_type' should be passed by reference. [passedByValue]
[protocols/frag_picker/FragmentScoreFilter.cc:398]: (performance) Function parameter 'pose' should be passed by reference. [passedByValue]
[protocols/frag_picker/JCouplingIO.hh:35]: (performance) Function parameter 'file_name' should be passed by reference. [passedByValue]
[protocols/frag_picker/PhiPsiTalosIO.hh:40]: (performance) Function parameter 'file_name' should be passed by reference. [passedByValue]
[protocols/frag_picker/VallProvider.cc:59]: (performance) Function parameter 'pdb_id' should be passed by reference. [passedByValue]
[protocols/frag_picker/nonlocal/NonlocalPair.hh:50]: (performance) Function parameter 'candidate_i' should be passed by reference. [passedByValue]
[protocols/frag_picker/nonlocal/NonlocalPair.hh:50]: (performance) Function parameter 'candidate_j' should be passed by reference. [passedByValue]
[protocols/frag_picker/quota/ABEGO_SS_Pool.cc:46]: (performance) Function parameter 'pool_name' should be passed by reference. [passedByValue]
[protocols/frag_picker/quota/QuotaConfig.hh:50]: (performance) Function parameter 'pool_name' should be passed by reference. [passedByValue]
[protocols/frag_picker/quota/SecondaryStructurePool.cc:43]: (performance) Function parameter 'pool_name' should be passed by reference. [passedByValue]
[protocols/frag_picker/scores/AtomBasedConstraintsScore.cc:43]: (performance) Function parameter 'score_name' should be passed by reference. [passedByValue]
[protocols/frag_picker/scores/AtomBasedConstraintsScore.cc:59]: (performance) Function parameter 'score_name' should be passed by reference. [passedByValue]
[protocols/frag_picker/scores/AtomPairConstraintsScore.cc:56]: (performance) Function parameter 'constraints_file_name' should be passed by reference. [passedByValue]
[protocols/frag_picker/scores/AtomPairConstraintsScore.cc:74]: (performance) Function parameter 'constraints_file_name' should be passed by reference. [passedByValue]
[protocols/frag_picker/scores/CachingScoringMethod.hh:48]: (performance) Function parameter 'name' should be passed by reference. [passedByValue]
[protocols/frag_picker/scores/FragmentScoreManager.hh:81]: (performance) Function parameter 'score_name' should be passed by reference. [passedByValue]
[protocols/frag_picker/scores/FragmentScoringMethod.hh:38]: (performance) Function parameter 'name' should be passed by reference. [passedByValue]
[protocols/frag_picker/scores/FragmentScoringMethod.hh:98]: (performance) Function parameter 'name' should be passed by reference. [passedByValue]
[protocols/frag_picker/scores/ProfileScoreDistWeight.hh:52]: (performance) Function parameter 'query_sequence' should be passed by reference. [passedByValue]
[protocols/frag_picker/scores/SecondaryIdentity.hh:45]: (performance) Function parameter 'prediction_name' should be passed by reference. [passedByValue]
[protocols/genetic_algorithm/Entity.cc:163]: (warning) Member variable 'Entity::fitness_valid_' is not assigned a value in 'Entity::operator='. [operatorEqVarError]
[protocols/genetic_algorithm/GeneticAlgorithm.cc:463]: (performance) Function parameter 'suffix' should be passed by reference. [passedByValue]
[protocols/helical_bundle/parameters/OmegaBundleParameter.hh:39]: (warning) The class 'OmegaBundleParameter' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/helical_bundle_predict/HBP_MoveGenerator.hh:37]: (warning) The class 'HBP_MoveGenerator' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/helical_bundle_predict/HBP_SigmoidalTemperatureScheduleGenerator.hh:35]: (warning) The class 'HBP_SigmoidalTemperatureScheduleGenerator' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/helical_bundle_predict/HBP_TemperatureScheduleGenerator.hh:32]: (warning) The class 'HBP_TemperatureScheduleGenerator' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/hybridization/MRMover.hh:70]: (performance) Function parameter 'newval' should be passed by reference. [passedByValue]
[protocols/indexed_structure_store/FragmentLookup.hh:99]: (performance) Function parameter 'subset' should be passed by reference. [passedByValue]
[protocols/indexed_structure_store/FragmentStoreManager.cc:51]: (performance) Function parameter 'lookup_name' should be passed by reference. [passedByValue]
[protocols/indexed_structure_store/pose_utility.hh:52]: (performance) Function parameter 'residue_type' should be passed by reference. [passedByValue]
[protocols/jd2/BatchJobInputter.cc:41]: (performance) Function parameter 'batch1' should be passed by reference. [passedByValue]
[protocols/jd2/InnerJob.hh:106]: (performance) Function parameter 'output_name' should be passed by reference. [passedByValue]
[protocols/jd2/Job.hh:173]: (performance) Function parameter 'prefix' should be passed by reference. [passedByValue]
[protocols/jd2/Job.hh:46]: (warning) The class 'Job' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/jd2/MpiFileBuffer.cc:77]: (performance) Possible inefficient checking for 'blocked_files_' emptiness. [stlSize]
[protocols/jd2/SilentFileJobOutputter.cc:364]: (performance) Function parameter 'name' should be passed by reference. [passedByValue]
[protocols/jd2/archive/ArchiveBase.cc:270]: (performance) Function parameter 'suffix' should be passed by reference. [passedByValue]
[protocols/jd2/archive/EvaluatedArchive.cc:101]: (warning) Member variable 'EvaluatedArchive::start_eval_time_' is not initialized in the constructor. [uninitMemberVar]
[protocols/jd2/archive/EvaluatedArchive.cc:91]: (warning) Member variable 'EvaluatedArchive::start_eval_time_' is not initialized in the constructor. [uninitMemberVar]
[protocols/jd2/archive/VarianceStatisticsArchive.cc:38]: (performance) Function parameter 'name' should be passed by reference. [passedByValue]
[protocols/jd3/InnerLarvalJob.hh:63]: (warning) The class 'InnerLarvalJob' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/jd3/InputSource.cc:46]: (performance) Function parameter 'origin' should be passed by reference. [passedByValue]
[protocols/jd3/chunk_library_inputters/ChunkLibraryInputSource.cc:37]: (performance) Function parameter 'origin' should be passed by reference. [passedByValue]
[protocols/jd3/full_model/FullModelJobQueen.cc:1305]: (style) Variable 'opt_tag_name' is assigned a value that is never used. [unreadVariable]
[protocols/jd3/full_model_inputters/FullModelInputSource.cc:37]: (performance) Function parameter 'origin' should be passed by reference. [passedByValue]
[protocols/jd3/pose_inputters/PoseInputSource.cc:37]: (performance) Function parameter 'origin' should be passed by reference. [passedByValue]
[protocols/jd3/standard/StandardInnerLarvalJob.hh:50]: (warning) The class 'StandardInnerLarvalJob' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/jobdist/JobDistributors.hh:92]: (warning) The class 'BaseJobDistributor' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/jobdist/Jobs.hh:104]: (performance) Function parameter 'str' should be passed by reference. [passedByValue]
[protocols/jumping/JumpSetup.cc:386]: (style) Variable 'ct' is modified but its new value is never used. [unreadVariable]
[protocols/jumping/JumpSetup.hh:316]: (performance) Function parameter 'ss' should be passed by reference. [passedByValue]
[protocols/jumping/SameStrand.hh:57]: (warning) The class 'SameStrand' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/ligand_docking/GALigandDock/util.cc:40]: (performance) Function parameter 'atomname' should be passed by reference. [passedByValue]
[protocols/ligand_docking/GALigandDock/util.cc:65]: (performance) Function parameter 'atomname' should be passed by reference. [passedByValue]
[protocols/loophash/BackboneDB.hh:147]: (performance) Function parameter 'filename' should be passed by reference. [passedByValue]
[protocols/loophash/LoopHashLibrary.hh:142]: (performance) Function parameter 'setting' should be passed by reference. [passedByValue]
[protocols/loophash/LoopHashMap.hh:170]: (performance) Function parameter 'filename' should be passed by reference. [passedByValue]
[protocols/loophash/MPI_LoopHashRefine.hh:77]: (performance) Function parameter 'new_ident' should be passed by reference. [passedByValue]
[protocols/match/downstream/DownstreamBuilder.hh:54]: (warning) The class 'DownstreamBuilder' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/match/output/MatchFilter.cc:35]: (performance) Function parameter 'filter_name' should be passed by reference. [passedByValue]
[protocols/match/output/UpstreamCollisionFilter.cc:147]: (performance) Function parameter 'filter_name' should be passed by reference. [passedByValue]
[protocols/match/output/UpstreamCollisionFilter.cc:47]: (performance) Function parameter 'filter_name' should be passed by reference. [passedByValue]
[protocols/membrane/scoring/MEnvAtomParams.hh:32]: (warning) The class 'MEnvAtomParams' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/minimization_packing/MinPackMover.hh:44]: (warning) The class 'MinPackMover' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/minimization_packing/RotamerizeMover.hh:44]: (warning) The class 'RotamerizeMover' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/minimization_packing/SetReturningPackRotamersMover.cc:138]: (performance) Function parameter 'filename_prefix' should be passed by reference. [passedByValue]
[protocols/monte_carlo/MonteCarloInterface.cc:38]: (performance) Function parameter 'interface' should be passed by reference. [passedByValue]
[protocols/monte_carlo/MonteCarloInterface.cc:53]: (performance) Function parameter 'interface' should be passed by reference. [passedByValue]
[protocols/monte_carlo/MonteCarloInterface.hh:32]: (warning) The class 'MonteCarloInterface' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/motifs/BuildPosition.hh:45]: (warning) The class 'BuildPosition' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/motifs/Motif.hh:44]: (warning) The class 'Motif' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/motifs/MotifHit.hh:36]: (warning) The class 'MotifHit' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/moves/ChangeFoldTreeMover.hh:53]: (performance) Function parameter 'fold_tree' should be passed by reference. [passedByValue]
[protocols/moves/ChangeFoldTreeMover.hh:58]: (performance) Function parameter 'fold_tree' should be passed by reference. [passedByValue]
[protocols/moves/MoverContainer.hh:262]: (performance) Function parameter 'sele' should be passed by reference. [passedByValue]
[protocols/moves/OutputMovers.cc:70]: (performance) Function parameter 'name_in' should be passed by reference. [passedByValue]
[protocols/moves/TrialMover.hh:107]: (warning) The class 'TrialMover' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/moves/VectorPoseMover.cc:35]: (warning) Member variable 'VectorPoseMover::poses_' is not initialized in the constructor. [uninitMemberVar]
[protocols/moves/VectorPoseMover.hh:32]: (warning) The class 'VectorPoseMover' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/mpi_refinement/MPI_Refinement.hh:100]: (performance) Function parameter 'new_ident' should be passed by reference. [passedByValue]
[protocols/mpi_refinement/MPI_Refinement.hh:127]: (performance) Function parameter 'prefix' should be passed by reference. [passedByValue]
[protocols/mpi_refinement/MPI_Refinement.hh:59]: (performance) Function parameter 'prefix' should be passed by reference. [passedByValue]
[protocols/mpi_refinement/MPI_Refinement.hh:62]: (performance) Function parameter 'prefix' should be passed by reference. [passedByValue]
[protocols/mpi_refinement/MPI_Refinement.hh:81]: (performance) Function parameter 'scorename' should be passed by reference. [passedByValue]
[protocols/mpi_refinement/MPI_Refinement.hh:93]: (performance) Function parameter 'scorename' should be passed by reference. [passedByValue]
[protocols/mpi_refinement/MPI_Refinement.hh:98]: (performance) Function parameter 'prefix' should be passed by reference. [passedByValue]
[protocols/mpi_refinement/MultiObjective.hh:101]: (performance) Function parameter 'inpose' should be passed by reference. [passedByValue]
[protocols/mpi_refinement/MultiObjective.hh:110]: (performance) Function parameter 'value' should be passed by reference. [passedByValue]
[protocols/mpi_refinement/MultiObjective.hh:47]: (performance) Function parameter 'prefix_in' should be passed by reference. [passedByValue]
[protocols/mpi_refinement/MultiObjective.hh:48]: (performance) Function parameter 'objname' should be passed by reference. [passedByValue]
[protocols/mpi_refinement/MultiObjective.hh:67]: (performance) Function parameter 'measure' should be passed by reference. [passedByValue]
[protocols/mpi_refinement/MultiObjective.hh:69]: (performance) Function parameter 'score_for_priority' should be passed by reference. [passedByValue]
[protocols/multistage_rosetta_scripts/cluster/metrics/SequenceMetric.cc:45]: (performance) Function parameter 'sequence' should be passed by reference. [passedByValue]
[protocols/multistage_rosetta_scripts/cluster/metrics/SequenceMetric.hh:79]: (performance) Function parameter 'setting' should be passed by reference. [passedByValue]
[protocols/multistate_design/MultiStateEntity.hh:36]: (warning) The class 'MultiStateEntity' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/multistate_design/MultiStatePacker.cc:61]: (performance) Function parameter 'word' should be passed by reference. [passedByValue]
[protocols/multistate_design/SingleState.hh:36]: (warning) The class 'SingleState' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/network/ui_mover.cc:132]: (warning) Member variable 'UIObserver::conformation_event_link_' is not initialized in the constructor. [uninitMemberVar]
[protocols/network/ui_mover.cc:132]: (warning) Member variable 'UIObserver::energy_event_link_' is not initialized in the constructor. [uninitMemberVar]
[protocols/network/ui_mover.cc:132]: (warning) Member variable 'UIObserver::general_event_link_' is not initialized in the constructor. [uninitMemberVar]
[protocols/noesy_assign/CrossPeakInfo.hh:72]: (performance) Function parameter 'label' should be passed by reference. [passedByValue]
[protocols/noesy_assign/CrossPeakInfo.hh:76]: (performance) Function parameter 'name' should be passed by reference. [passedByValue]
[protocols/noesy_assign/Exceptions.hh:44]: (performance) Function parameter 'atom' should be passed by reference. [passedByValue]
[protocols/noesy_assign/PeakAssignmentResidueMap.cc:223]: (performance) Possible inefficient checking for 'symmetric_candidates_inv' emptiness. [stlSize]
[protocols/noesy_assign/PeakAssignmentResidueMap.cc:239]: (performance) Possible inefficient checking for 'symmetric_candidates' emptiness. [stlSize]
[protocols/noesy_assign/PeakFileFormat.hh:75]: (performance) Function parameter 'str' should be passed by reference. [passedByValue]
[protocols/peptide_deriver/PeptideDeriverBasicStreamOutputter.cc:40]: (performance) Function parameter 'prefix' should be passed by reference. [passedByValue]
[protocols/peptide_deriver/PeptideDeriverBasicStreamOutputter.hh:34]: (warning) The class 'PeptideDeriverBasicStreamOutputter' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/peptide_deriver/PeptideDeriverOutputterContainer.hh:33]: (warning) The class 'PeptideDeriverOutputterContainer' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/peptide_deriver/PeptideDeriverPoseOutputter.cc:54]: (warning) Member variable 'PeptideDeriverPoseOutputter::current_chain_pair_pose_' is not initialized in the constructor. [uninitMemberVar]
[protocols/peptide_deriver/PeptideDeriverPoseOutputter.hh:39]: (warning) The class 'PeptideDeriverPoseOutputter' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/pockets/PocketExemplarMultifunc.cc:40]: (performance) Function parameter 'input_pdb_name' should be passed by reference. [passedByValue]
[protocols/pockets/PocketExemplarMultifunc.cc:40]: (performance) Function parameter 'resid' should be passed by reference. [passedByValue]
[protocols/pose_creation/SliceToMiniProteinMover.hh:57]: (performance) Function parameter 'pose_i' should be passed by reference. [passedByValue]
[protocols/protein_interface_design/ReportPSSMDifference.hh:33]: (warning) The class 'ReportPSSMDifferences' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/protein_interface_design/design_utils.hh:39]: (warning) The class 'ReportSequenceDifferences' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/protein_interface_design/design_utils.hh:78]: (warning) The class 'Revert' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/protein_interface_design/movers/BuildAlaPose.cc:64]: (performance) Function parameter 'AA' should be passed by reference. [passedByValue]
[protocols/protein_interface_design/movers/BuildAlaPose.cc:71]: (performance) Variable 'AA_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/protein_interface_design/movers/BuildAlaPose.hh:58] -> [protocols/calc_taskop_movers/DesignRepackMover.hh:110]: (warning) The class 'BuildAlaPose' defines member variable with name 'interface_distance_cutoff_' also defined in its parent class 'DesignRepackMover'. [duplInheritedMember]
[protocols/protein_interface_design/movers/DesignMinimizeHbonds.hh:73] -> [protocols/calc_taskop_movers/DesignRepackMover.hh:110]: (warning) The class 'DesignMinimizeHbonds' defines member variable with name 'interface_distance_cutoff_' also defined in its parent class 'DesignRepackMover'. [duplInheritedMember]
[protocols/qsar/qsarMap.cc:65]: (performance) Function parameter 'map_name' should be passed by reference. [passedByValue]
[protocols/residue_selectors/HBondSelector.cc:269]: (performance) Function parameter 'input' should be passed by reference. [passedByValue]
[protocols/residue_selectors/HBondSelector.hh:47]: (warning) The class 'HBondSelector' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/residue_selectors/StoreResidueSubsetMover.hh:67]: (performance) Function parameter 'name' should be passed by reference. [passedByValue]
[protocols/rotamer_recovery/RRComparer.hh:140]: (warning) The class 'RRComparerChiDiff' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/rotamer_recovery/RRComparer.hh:89]: (warning) The class 'RRComparerRotBins' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/rotamer_recovery/RRComparerElecDensDiff.hh:37]: (warning) The class 'RRComparerElecDensDiff' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/rotamer_recovery/RRProtocolMover.hh:38]: (warning) The class 'RRProtocolMover' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/rotamer_recovery/RRProtocolReferenceStructure.hh:39]: (warning) The class 'RRProtocolReferenceStructure' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/rotamer_recovery/RRReporter.hh:86]: (warning) The class 'RRReporterSimple' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/rotamer_recovery/RRReporterHuman.hh:128]: (warning) The class 'RRReporterHuman' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/rotamer_recovery/RRReporterSQLite.hh:46]: (warning) The class 'RRReporterSQLite' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/rotamer_recovery/RotamerRecovery.cc:79]: (warning) Member variable 'RotamerRecovery::ignore_unrecognized_res_' is not initialized in the constructor. [uninitMemberVar]
[protocols/rotamer_recovery/RotamerRecovery.hh:45]: (warning) The class 'RotamerRecovery' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/scoring/InterfaceInfo.hh:46]: (warning) The class 'InterfaceInfo' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/scoring/methods/pcs/PseudocontactShiftEnergy.cc:747]: (performance) Function parameter 'grid_atom_name_1' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcs/PseudocontactShiftEnergy.cc:748]: (performance) Function parameter 'grid_atom_name_2' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcs/PseudocontactShiftTensor.cc:99]: (performance) Function parameter 'label' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcs/PseudocontactShiftTensor.hh:92]: (performance) Function parameter 'label' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcs2/PcsTensor.cc:100]: (performance) Function parameter 'label' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcs2/PcsTensor.hh:93]: (performance) Function parameter 'label' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftEnergy.cc:744]: (performance) Function parameter 'grid_atom_name_1' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftEnergy.cc:745]: (performance) Function parameter 'grid_atom_name_2' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftTensor.cc:99]: (performance) Function parameter 'label' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftTensor.hh:92]: (performance) Function parameter 'label' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftEnergy.cc:744]: (performance) Function parameter 'grid_atom_name_1' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftEnergy.cc:745]: (performance) Function parameter 'grid_atom_name_2' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftTensor.cc:99]: (performance) Function parameter 'label' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftTensor.hh:92]: (performance) Function parameter 'label' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftEnergy.cc:744]: (performance) Function parameter 'grid_atom_name_1' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftEnergy.cc:745]: (performance) Function parameter 'grid_atom_name_2' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftTensor.cc:99]: (performance) Function parameter 'label' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftTensor.hh:92]: (performance) Function parameter 'label' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftEnergy.cc:744]: (performance) Function parameter 'grid_atom_name_1' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftEnergy.cc:745]: (performance) Function parameter 'grid_atom_name_2' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftTensor.cc:100]: (performance) Function parameter 'label' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftTensor.hh:92]: (performance) Function parameter 'label' should be passed by reference. [passedByValue]
[protocols/sewing/data_storage/SmartSegment.cc:402]: (performance) Function parameter 'vital' should be passed by reference. [passedByValue]
[protocols/sewing/data_storage/SmartSegment.hh:32]: (warning) The class 'SmartSegment' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/sewing/data_storage/SmartSewingResidue.cc:92]: (performance) Function parameter 'new_amino_acid_type' should be passed by reference. [passedByValue]
[protocols/sewing/data_storage/SmartSewingResidue.hh:30]: (warning) The class 'SmartSewingResidue' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/sic_dock/designability_score.cc:69]: (performance) Function parameter 'datadir' should be passed by reference. [passedByValue]
[protocols/sic_dock/designability_score.hh:28]: (style) struct 'XfoxmScore' does not have a copy constructor which is recommended since the class contains a pointer to allocated memory. [noCopyConstructor]
[protocols/simple_filters/AveragePathLengthFilter.hh:32]: (warning) The class 'AveragePathLengthFilter' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/simple_filters/CamShiftEvaluator.cc:50]: (performance) Function parameter 'cs_file' should be passed by reference. [passedByValue]
[protocols/simple_filters/CamShiftEvaluator.cc:50]: (performance) Function parameter 'tag' should be passed by reference. [passedByValue]
[protocols/simple_filters/DisulfideEntropyFilter.hh:32]: (warning) The class 'DisulfideEntropyFilter' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/simple_filters/PalesEvaluator.cc:49]: (performance) Function parameter 'pales_rdc_file' should be passed by reference. [passedByValue]
[protocols/simple_filters/PalesEvaluator.cc:49]: (performance) Function parameter 'tag' should be passed by reference. [passedByValue]
[protocols/simple_filters/RmsdEvaluator.cc:161]: (performance) Possible inefficient checking for 'selection_' emptiness. [stlSize]
[protocols/simple_filters/RmsdEvaluator.cc:221]: (performance) Possible inefficient checking for 'selection_' emptiness. [stlSize]
[protocols/simple_filters/RmsdEvaluator.cc:275]: (performance) Function parameter 'tag' should be passed by reference. [passedByValue]
[protocols/simple_filters/RmsdEvaluator.cc:287]: (performance) Function parameter 'loops' should be passed by reference. [passedByValue]
[protocols/simple_filters/RmsdEvaluator.cc:287]: (performance) Function parameter 'tag' should be passed by reference. [passedByValue]
[protocols/simple_filters/RmsdEvaluator.cc:295]: (performance) Function parameter 'core' should be passed by reference. [passedByValue]
[protocols/simple_filters/RmsdEvaluator.cc:295]: (performance) Function parameter 'loops' should be passed by reference. [passedByValue]
[protocols/simple_filters/RmsdEvaluator.cc:295]: (performance) Function parameter 'tag' should be passed by reference. [passedByValue]
[protocols/simple_filters/RmsdEvaluator.cc:64]: (performance) Function parameter 'tag' should be passed by reference. [passedByValue]
[protocols/simple_filters/RmsdEvaluator.cc:76]: (performance) Function parameter 'tag' should be passed by reference. [passedByValue]
[protocols/simple_filters/SimpleMetricFilter.cc:170]: (performance) Function parameter 'prefix' should be passed by reference. [passedByValue]
[protocols/simple_filters/SimpleMetricFilter.cc:170]: (performance) Function parameter 'suffix' should be passed by reference. [passedByValue]
[protocols/simple_filters/SimpleMetricFilter.cc:61]: (performance) Function parameter 'composite_action' should be passed by reference. [passedByValue]
[protocols/simple_moves/ConvertRealToVirtualMover.hh:49]: (warning) The class 'ConvertRealToVirtualMover' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/simple_moves/ConvertVirtualToRealMover.hh:49]: (warning) The class 'ConvertVirtualToRealMover' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/simple_moves/DumpSingleResidueRotamers.cc:308]: (style) Variable 'stdev' is assigned a value that is never used. [unreadVariable]
[protocols/simple_moves/DumpSingleResidueRotamers.hh:36]: (warning) The class 'DumpSingleResidueRotamers' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/simple_moves/ScoreMover.hh:84]: (performance) Function parameter 'scorefile' should be passed by reference. [passedByValue]
[protocols/simple_moves/SimpleThreadingMover.cc:121]: (performance) Function parameter 'thread_sequence' should be passed by reference. [passedByValue]
[protocols/simple_moves/SimpleThreadingMover.cc:52]: (performance) Function parameter 'thread_sequence' should be passed by reference. [passedByValue]
[protocols/simple_moves/bb_sampler/BBDihedralSampler.hh:48]: (warning) The class 'BBDihedralSamplerBase' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/simple_task_operations/InterfaceTaskOperation.hh:29]: (warning) The class 'InterfaceTaskOperation' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/stepwise/modeler/protein/MainChainTorsionSet.hh:31]: (warning) The class 'MainChainTorsionSet' has 'operator=' but lack of 'copy constructor'. [copyCtorAndEqOperator]
[protocols/stepwise/modeler/rna/checker/RNA_AtrRepChecker.hh:84]: (performance) Function parameter 'tag' should be passed by reference. [passedByValue]
[protocols/surface_docking/SurfaceParameters.hh:32]: (warning) The class 'SurfaceParameters' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/task_operations/ConservativeDesignOperation.cc:76]: (performance) Function parameter 'data_source' should be passed by reference. [passedByValue]
[protocols/task_operations/ResfileCommandOperation.hh:32]: (warning) The class 'ResfileCommandOperation' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/task_operations/ResidueProbDesignOperation.hh:47]: (warning) The class 'ResidueProbDesignOperation' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/task_operations/SequenceMotifTaskOperation.hh:38]: (warning) The class 'SequenceMotifTaskOperation' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/task_operations/pHVariantTaskOperation.hh:30]: (warning) The class 'pHVariantTaskOperation' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/tcr/TCRseqInfo.cc:84]: (performance) Function parameter 'alpha_chain_sequence' should be passed by reference. [passedByValue]
[protocols/tcr/TCRseqInfo.cc:84]: (performance) Function parameter 'beta_chain_sequence' should be passed by reference. [passedByValue]
[protocols/tcr/template_util.cc:170]: (performance) Function parameter 'blast_db' should be passed by reference. [passedByValue]
[protocols/tcr/template_util.cc:170]: (performance) Function parameter 'query' should be passed by reference. [passedByValue]
[protocols/toolbox/CalcInterNeighborGroup.hh:57]: (warning) The class 'CalcInterNeighborGroup' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/toolbox/KCluster.cc:330]: (performance) Function parameter 't' should be passed by reference. [passedByValue]
[protocols/toolbox/NetworkAlgorithms.cc:49]: (performance) Possible inefficient checking for 'nodes_' emptiness. [stlSize]
[protocols/toolbox/NetworkAlgorithms.cc:67]: (performance) Possible inefficient checking for 'nodes_' emptiness. [stlSize]
[protocols/toolbox/NetworkAlgorithms.hh:117]: (performance) Function parameter 'ID' should be passed by reference. [passedByValue]
[protocols/toolbox/match_enzdes_util/EnzdesSeqRecoveryCache.hh:46]: (warning) The class 'EnzdesSeqRecoveryCache' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/toolbox/match_enzdes_util/InvrotTree.cc:91]: (performance) Function parameter 'filename_base' should be passed by reference. [passedByValue]
[protocols/toolbox/match_enzdes_util/InvrotTreeNodeBase.hh:51]: (warning) The class 'InvrotCollector' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/toolbox/rotamer_set_operations/RigidBodyMoveRotSetOps.hh:56]: (warning) The class 'RigidBodyMoveBaseRSO' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/topology_broker/SequenceNumberResolver.hh:36]: (warning) The class 'SequenceNumberResolver' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/unfolded_state_energy_calculator/UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor.cc:250]: (performance) Function parameter 'tlc' should be passed by reference. [passedByValue]
[protocols/unfolded_state_energy_calculator/UnfoldedStateEnergyCalculatorMover.hh:45]: (warning) The class 'UnfoldedStateEnergyCalculatorMover' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/viewer/viewers.hh:96]: (performance) Function parameter 'empty_string' should be passed by reference. [passedByValue]
[protocols/wum/WorkUnitBase.cc:119] -> [protocols/wum/WorkUnitBase.cc:119]: (style) Same expression on both sides of '-'. [duplicateExpression]
[utility/io/mpistream.hh:159]: (performance) Function parameter 'filename' should be passed by reference. [passedByValue]
[utility/io/mpistream.hh:245]: (performance) Function parameter 'filename' should be passed by reference. [passedByValue]
[utility/json_spirit/json_spirit_value.h:321]: (error) syntax error [syntaxError]
[utility/keys/KeyLookup.hh:234]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[utility/keys/VariantKey.hh:87]: (warning) 'operator=' should check for assignment to self to avoid problems with dynamic memory. [operatorEqToSelf]
[utility/options/mpi_stderr.cc:40]: (style) Condition 'mpi_rank==0' is always true [knownConditionTrueFalse]
[utility/string_util.cc:500]: (error) Array index -1 is out of bounds. [negativeContainerIndex]
[utility/string_util.hh:190]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[utility/string_util.hh:206]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[utility/tag/Tag.hh:46]: (warning) The class 'Tag' has 'operator=' but lack of 'copy constructor'. [copyCtorAndEqOperator]
[utility/tag/XMLSchemaGeneration.cc:212]: (performance) Function parameter 'setting' should be passed by reference. [passedByValue]
[utility/tag/XMLSchemaGeneration.cc:561]: (performance) Function parameter 'setting' should be passed by reference. [passedByValue]
[utility/tag/XMLSchemaGeneration.cc:856]: (performance) Function parameter 'setting' should be passed by reference. [passedByValue]
[utility/thread/mutable_cache.hh:77]: (performance) Variable 'data_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/rigid/RB_geometry.cc:178]: (style) Condition 'upstream_atoms>0' is always false [knownConditionTrueFalse]
[protocols/rigid/RB_geometry.cc:182]: (style) Condition 'downstream_atoms>0' is always false [knownConditionTrueFalse]
[protocols/rigid/RB_geometry.cc:266]: (style) Condition 'upstream_atoms==0' is always true [knownConditionTrueFalse]
[utility/options/VariantOption.hh:91]: (warning) 'operator=' should check for assignment to self to avoid problems with dynamic memory. [operatorEqToSelf]
[protocols/ligand_docking/Rotates.hh:35]: (warning) The class 'Rotates' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/ligand_docking/Rotates.cc:53]: (warning) Member variable 'Rotates::chains_' is not initialized in the constructor. [uninitMemberVar]
######################################################
# Issues which surfaced after header removal
######################################################
[apps/public/pocket/pocket_suggest_target_residues_by_ddg.cc:335]: (style) Variable 'gridResCount' is modified but its new value is never used. [unreadVariable]
[core/conformation/membrane/AqueousPoreParameters.hh:43]: (warning) The class 'AqueousPoreParameters' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/conformation/membrane/ImplicitLipidInfo.cc:489]: (performance) Inefficient usage of string::find() in condition; string::compare() would be faster. [stlIfStrFind]
[core/conformation/membrane/ImplicitLipidInfo.cc:490]: (performance) Inefficient usage of string::find() in condition; string::compare() would be faster. [stlIfStrFind]
[core/conformation/membrane/ImplicitLipidInfo.cc:83]: (performance) Function parameter 'lipid_composition_name' should be passed by reference. [passedByValue]
[core/energy_methods/PointWaterEnergy.hh:37]: (warning) The class 'PointWaterEnergy' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/energy_methods/ProQ_Energy.cc:243]: (performance) Function parameter 'name' should be passed by reference. [passedByValue]
[core/energy_methods/ProQ_Energy.hh:41]: (warning) The class 'ProQ_Energy' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/energy_methods/RMS_Energy.hh:70]: (style) Unused private function: 'RMS_Energy::version' [unusedPrivateFunction]
[core/io/mmtf/mmtf_reader.cc:508]: (performance) Function parameter 'atom_idx_chains' should be passed by reference. [passedByValue]
[core/io/raw_data/DecoyStruct.cc:44]: (performance) Function parameter 'tag' should be passed by reference. [passedByValue]
[core/io/silent/RNA_SilentStruct.cc:546]: (warning) Member variable 'RNA_SilentStruct::chi_torsions_' is not assigned a value in 'RNA_SilentStruct::operator='. [operatorEqVarError]
[core/io/silent/RNA_SilentStruct.cc:546]: (warning) Member variable 'RNA_SilentStruct::coords_' is not assigned a value in 'RNA_SilentStruct::operator='. [operatorEqVarError]
[core/io/silent/RNA_SilentStruct.cc:546]: (warning) Member variable 'RNA_SilentStruct::fold_tree_' is not assigned a value in 'RNA_SilentStruct::operator='. [operatorEqVarError]
[core/io/silent/RNA_SilentStruct.cc:546]: (warning) Member variable 'RNA_SilentStruct::fullatom_' is not assigned a value in 'RNA_SilentStruct::operator='. [operatorEqVarError]
[core/io/silent/RNA_SilentStruct.cc:546]: (warning) Member variable 'RNA_SilentStruct::jumps_' is not assigned a value in 'RNA_SilentStruct::operator='. [operatorEqVarError]
[core/io/silent/RNA_SilentStruct.cc:546]: (warning) Member variable 'RNA_SilentStruct::mainchain_torsions_' is not assigned a value in 'RNA_SilentStruct::operator='. [operatorEqVarError]
[core/io/silent/RNA_SilentStruct.cc:546]: (warning) Member variable 'RNA_SilentStruct::non_main_chain_sugar_coords_' is not assigned a value in 'RNA_SilentStruct::operator='. [operatorEqVarError]
[core/io/silent/RNA_SilentStruct.cc:546]: (warning) Member variable 'RNA_SilentStruct::non_main_chain_sugar_coords_defined_' is not assigned a value in 'RNA_SilentStruct::operator='. [operatorEqVarError]
[core/io/silent/RNA_SilentStruct.cc:546]: (warning) Member variable 'RNA_SilentStruct::secstruct_' is not assigned a value in 'RNA_SilentStruct::operator='. [operatorEqVarError]
[core/io/silent/RNA_SilentStruct.hh:52]: (warning) The class 'RNA_SilentStruct' has 'operator=' but lack of 'copy constructor'. [copyCtorAndEqOperator]
[core/pack/task/residue_selector/ClashBasedShellSelector.cc:320]: (performance) Function parameter 'resnums' should be passed by reference. [passedByValue]
[core/pack/task/residue_selector/ClashBasedShellSelector.cc:351]: (performance) Function parameter 'resnums' should be passed by reference. [passedByValue]
[core/pack/task/residue_selector/ClashBasedShellSelector.cc:573]: (performance) Function parameter 'resnum_list' should be passed by reference. [passedByValue]
[core/scoring/VdWTinkerPotential.hh:121]: (warning) The class 'VdWTinkerPoseInfo' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/scoring/VdWTinkerPotential.hh:217]: (warning) The class 'VdWTinkerRotamerSetInfo' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/scoring/cryst/PhenixInterface.hh:89]: (performance) Function parameter 'adp_strat' should be passed by reference. [passedByValue]
[core/scoring/cryst/PhenixInterface.hh:92]: (performance) Function parameter 'tgt_val' should be passed by reference. [passedByValue]
[core/scoring/elec/GroupElec.cc:69]: (warning) Member variable 'GroupElec::cpfxn_weight_' is not initialized in the constructor. [uninitMemberVar]
[core/scoring/electron_density_atomwise/ElectronDensityAtomwise.cc:70]: (performance) Variable 'orig' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/electron_density_atomwise/ElectronDensityAtomwise.cc:71]: (performance) Variable 'cell_dimensions' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/electron_density_atomwise/ElectronDensityAtomwise.cc:72]: (performance) Variable 'cell_angles' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[core/scoring/lkball/LK_BallEnergy.hh:60]: (warning) The class 'LK_BallEnergy' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[core/select/residue_selector/NumNeighborsSelector.hh:41]: (warning) The class 'NumNeighborsSelector' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/antibody/design/AntibodyDesignMover.hh:380]: (performance) Function parameter 'name' should be passed by reference. [passedByValue]
[protocols/canonical_sampling/AsyncMPITemperingBase.cc:367]: (style) Condition 'outcount>0' is always true [knownConditionTrueFalse]
[protocols/canonical_sampling/BiasedMonteCarlo.hh:31]: (warning) The class 'BiasedMonteCarlo' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/carbohydrates/GlycanTreeModeler.hh:82]: (warning) The class 'GlycanTreeModeler' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/carbohydrates/LinkageConformerMover.hh:58]: (warning) The class 'LinkageConformerMover' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/carbohydrates/SimpleGlycosylateMover.hh:72]: (warning) The class 'SimpleGlycosylateMover' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/constraints_additional/CombinedConstraintEvaluator.cc:86]: (style) Condition 'size()==2' is always true [knownConditionTrueFalse]
[protocols/cryst/spacegroup.cc:58]: (performance) Function parameter 'name_in' should be passed by reference. [passedByValue]
[protocols/cryst/spacegroup.cc:67]: (performance) Function parameter 'name_in' should be passed by reference. [passedByValue]
[protocols/cryst/wallpaper.cc:55]: (performance) Function parameter 'name_in' should be passed by reference. [passedByValue]
[protocols/cryst/wallpaper.cc:64]: (performance) Function parameter 'name_in' should be passed by reference. [passedByValue]
[protocols/cryst/wallpaper.cc:77] -> [protocols/cryst/wallpaper.cc:77]: (style) Same expression on both sides of '||'. [duplicateExpression]
[protocols/dna_dock/DNAClashCheckFilter.cc:108]: (performance) Function parameter 'dna_a_path' should be passed by reference. [passedByValue]
[protocols/dna_dock/DNAClashCheckFilter.cc:109]: (performance) Function parameter 'dna_b_path' should be passed by reference. [passedByValue]
[protocols/dna_dock/DNAClashCheckFilter.cc:79]: (performance) Function parameter 'dna_a_path' should be passed by reference. [passedByValue]
[protocols/dna_dock/DNAClashCheckFilter.cc:79]: (performance) Function parameter 'dna_b_path' should be passed by reference. [passedByValue]
[protocols/dna_dock/PropagateClashCheckFilter.cc:124]: (performance) Function parameter 'default_bridge_type' should be passed by reference. [passedByValue]
[protocols/docking/DockingEnsemblePrepackProtocol.cc:360] -> [protocols/docking/DockingEnsemblePrepackProtocol.cc:400]: (style) Variable 'starting_pose' is reassigned a value before the old one has been used. [redundantAssignment]
[protocols/docking/DockingPrepackProtocol.cc:125]: (performance) Function parameter 'outfilename' should be passed by reference. [passedByValue]
[protocols/docking/membrane/MPDockingMover.hh:50]: (warning) The class 'MPDockingMover' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/fold_from_loops/constraint_generator/SegmentedAtomPairConstraintGenerator.hh:120]: (performance) Function parameter 'tag_name' should be passed by reference. [passedByValue]
[protocols/fold_from_loops/selectors/CutpointResidueSelector.cc:63]: (warning) Member variable 'CutpointResidueSelector::use_foldtree_' is not initialized in the constructor. [uninitMemberVar]
[protocols/fold_from_loops/selectors/CutpointResidueSelector.hh:39]: (warning) The class 'CutpointResidueSelector' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/frag_picker/scores/ProfileScoreSubMatrix.cc:59]: (performance) Function parameter 'subMatrixFile' should be passed by reference. [passedByValue]
[protocols/frag_picker/scores/ProfileScoreSubMatrix.cc:64]: (performance) Variable 'sequence_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frag_picker/scores/ProfileScoreSubMatrix.cc:65]: (performance) Variable 'subMatrixFile_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
[protocols/frags/TorsionFragment.hh:333]: (warning) The class 'FragLib' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/grafting/GraftMoverBase.cc:51]: (performance) Function parameter 'mover_name' should be passed by reference. [passedByValue]
[protocols/helical_bundle/BundleGridSampler.hh:50]: (warning) The class 'BundleGridSampler' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/helical_bundle_predict/HBP_FinalFullatomRefinementMoveGenerator.hh:36]: (warning) The class 'HBP_FinalFullatomRefinementMoveGenerator' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/helix_capper/HelixNCapperMover.cc:51]: (performance) Function parameter 'p' should be passed by reference. [passedByValue]
[protocols/hotspot_hashing/movers/PlaceSurfaceProbe.cc:67]: (performance) Function parameter 'residue_name' should be passed by reference. [passedByValue]
[protocols/indexed_structure_store/movers/SegmentSequenceProfileMover.cc:193]: (performance) Function parameter 'profile' should be passed by reference. [passedByValue]
[protocols/indexed_structure_store/movers/SegmentSequenceProfileMover.cc:215]: (performance) Function parameter 'path' should be passed by reference. [passedByValue]
[protocols/indexed_structure_store/movers/SegmentSequenceProfileMover.hh:59]: (performance) Function parameter 'new_output_lookup_count' should be passed by reference. [passedByValue]
[protocols/indexed_structure_store/movers/SegmentSequenceProfileMover.hh:62]: (performance) Function parameter 'new_output_pssm_filename' should be passed by reference. [passedByValue]
[protocols/indexed_structure_store/movers/SegmentSequenceProfileMover.hh:71]: (performance) Function parameter 'new_scaling' should be passed by reference. [passedByValue]
[protocols/jd2/JobDistributor.cc:630]: (style) The scope of the variable 'guarantee_new_mover' can be reduced. [variableScope]
[protocols/jd2/VectorPoseJobDistributor.cc:439]: (style) Condition 'filter_passed' is always true [knownConditionTrueFalse]
[protocols/kinematic_closure/perturbers/PerturberSet.cc:63]: (performance) Function parameter 'indent' should be passed by reference. [passedByValue]
[protocols/ligand_docking/ChainExistsFilter.hh:27]: (warning) The class 'ChainExistsFilter' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/ligand_docking/GALigandDock/GAOptimizer.cc:301]: (performance) Function parameter 'lig' should be passed by reference. [passedByValue]
[protocols/ligand_docking/GALigandDock/GAOptimizer.hh:74]: (performance) Function parameter 'native' should be passed by reference. [passedByValue]
[protocols/ligand_docking/GALigandDock/LigandConformer.hh:223]: (performance) Function parameter 'tag' should be passed by reference. [passedByValue]
[protocols/ligand_docking/HighResDocker.hh:51]: (warning) The class 'HighResDocker' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/loop_modeler/perturbers/LoopHashPerturber.hh:87]: (performance) Function parameter 'value' should be passed by reference. [passedByValue]
[protocols/loophash/LoopHashRelaxProtocol.cc:224]: (style) Variable 'casecount' is modified but its new value is never used. [unreadVariable]
[protocols/loops/Exceptions.hh:29]: (performance) Function parameter 'msg' should be passed by reference. [passedByValue]
[protocols/membrane/FlipMover.cc:121]: (warning) Member variable 'FlipMover::random_angle_' is not assigned a value in 'FlipMover::operator='. [operatorEqVarError]
[protocols/membrane/OptimizeMembranePositionMover.cc:77]: (warning) Member variable 'OptimizeMembranePositionMover::ft_' is not assigned a value in 'OptimizeMembranePositionMover::operator='. [operatorEqVarError]
[protocols/membrane/SpinAroundPartnerMover.cc:105]: (warning) Member variable 'SpinAroundPartnerMover::rand_range_' is not assigned a value in 'SpinAroundPartnerMover::operator='. [operatorEqVarError]
[protocols/membrane/TiltMover.cc:101]: (warning) Member variable 'TiltMover::random_angle_' is not assigned a value in 'TiltMover::operator='. [operatorEqVarError]
[protocols/minimization_packing/PackRotamersMover.cc:142]: (warning) Member variable 'PackRotamersMover::observer_' is not initialized in the constructor. [uninitMemberVar]
[protocols/minimization_packing/PackRotamersMover.hh:57]: (warning) The class 'PackRotamersMover' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/moves/PyMOLMover.hh:357]: (performance) Function parameter 'new_pymol_name' should be passed by reference. [passedByValue]
[protocols/mpi_refinement/Clusterer.cc:51]: (performance) Function parameter 'structs' should be passed by reference. [passedByValue]
[protocols/mpi_refinement/MPI_Refine_Master.cc:977]: (performance) Function parameter 'pick_strategy' should be passed by reference. [passedByValue]
[protocols/mpi_refinement/MPI_Refine_Master.cc:978]: (performance) Function parameter 'objfunction' should be passed by reference. [passedByValue]
[protocols/mpi_refinement/MPI_Refine_Master.hh:98]: (performance) Function parameter 'columnname' should be passed by reference. [passedByValue]
[protocols/mpi_refinement/MultiObjective.cc:290]: (performance) Function parameter 'prefix' should be passed by reference. [passedByValue]
[protocols/mpi_refinement/MultiObjective.cc:291]: (performance) Function parameter 'objname' should be passed by reference. [passedByValue]
[protocols/mpi_refinement/MultiObjective.cc:835]: (performance) Function parameter 'measure' should be passed by reference. [passedByValue]
[protocols/mpi_refinement/MultiObjective.cc:837]: (performance) Function parameter 'score_for_priority' should be passed by reference. [passedByValue]
[protocols/mpi_refinement/util.hh:112]: (performance) Function parameter 'pose_frame' should be passed by reference. [passedByValue]
[protocols/mpi_refinement/util.hh:165]: (performance) Function parameter 'pose0' should be passed by reference. [passedByValue]
[protocols/mpi_refinement/util.hh:173]: (performance) Function parameter 'pose0' should be passed by reference. [passedByValue]
[protocols/mpi_refinement/util.hh:60]: (performance) Function parameter 'pose' should be passed by reference. [passedByValue]
[protocols/multistage_rosetta_scripts/MRSJobQueen.cc:994]: (performance) Possible inefficient checking for 'data_tags' emptiness. [stlSize]
[protocols/nmr/nmrspinlabel_util.cc:106]: (performance) Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[protocols/noesy_assign/FragsToAtomDist.hh:109]: (performance) Function parameter 'atom1' should be passed by reference. [passedByValue]
[protocols/noesy_assign/FragsToAtomDist.hh:110]: (performance) Function parameter 'atom2' should be passed by reference. [passedByValue]
[protocols/optimize_weights/IterativeOptEDriver.cc:155]: (warning) The class 'ScaleAnnealerTemperatureOperation' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/pose_length_moves/AnalyzeLoopModeling.cc:145]: (performance) Function parameter 'pose' should be passed by reference. [passedByValue]
[protocols/pose_length_moves/ConnectChainsMover.hh:65]: (performance) Function parameter 'pose' should be passed by reference. [passedByValue]
[protocols/pose_length_moves/NearNativeLoopCloser.hh:67]: (performance) Function parameter 'pose' should be passed by reference. [passedByValue]
[protocols/pose_reporters/BasicPosePropertyReporters.cc:253]: (performance) Possible inefficient checking for 'residues' emptiness. [stlSize]
[protocols/pose_reporters/BasicPosePropertyReporters.cc:261]: (performance) Possible inefficient checking for 'residues' emptiness. [stlSize]
[protocols/protein_interface_design/filters/HbondsToResidueFilter.hh:43]: (warning) The class 'HbondsToResidueFilter' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/protein_interface_design/filters/InterfaceHolesFilter.hh:29]: (warning) The class 'InterfaceHolesFilter' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/rigid/RigidBodyMover.hh:813]: (performance) Function parameter 'dofs' should be passed by reference. [passedByValue]
[protocols/rosetta_scripts/ParsedProtocol.cc:81]: (warning) Member variable 'ParsedProtocolStep::report_time_' is not initialized in the constructor. [uninitMemberVar]
[protocols/scoring/methods/pcs/PseudocontactShiftEnergy.hh:196]: (performance) Function parameter 'grid_atom_name_1' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcs/PseudocontactShiftEnergy.hh:197]: (performance) Function parameter 'grid_atom_name_2' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftEnergy.hh:188]: (performance) Function parameter 'grid_atom_name_1' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcsTs1/PseudocontactShiftEnergy.hh:189]: (performance) Function parameter 'grid_atom_name_2' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftEnergy.hh:189]: (performance) Function parameter 'grid_atom_name_1' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcsTs2/PseudocontactShiftEnergy.hh:190]: (performance) Function parameter 'grid_atom_name_2' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftEnergy.hh:188]: (performance) Function parameter 'grid_atom_name_1' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcsTs3/PseudocontactShiftEnergy.hh:189]: (performance) Function parameter 'grid_atom_name_2' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftEnergy.hh:188]: (performance) Function parameter 'grid_atom_name_1' should be passed by reference. [passedByValue]
[protocols/scoring/methods/pcsTs4/PseudocontactShiftEnergy.hh:189]: (performance) Function parameter 'grid_atom_name_2' should be passed by reference. [passedByValue]
[protocols/simple_ddg/SSElementBisectddGFilter.hh:42]: (warning) The class 'SSElementBisectddGFilter' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/simple_filters/DomainInterfaceFilter.hh:44]: (warning) The class 'DomainInterfaceFilter' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/simple_filters/EnergyPerResidueFilter.cc:213]: (performance) Function parameter 'name' should be passed by reference. [passedByValue]
[protocols/simple_filters/EnergyPerResidueFilter.hh:28]: (warning) The class 'EnergyPerResidueFilter' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/simple_filters/ResidueDepthFilter.cc:702]: (performance) Function parameter 'infile' should be passed by reference. [passedByValue]
[protocols/simple_filters/ResidueDepthFilter.cc:784]: (performance) Function parameter 'infile' should be passed by reference. [passedByValue]
[protocols/simple_filters/ResiduesInInterfaceFilter.hh:26]: (warning) The class 'ResiduesInInterfaceFilter' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/simple_filters/SSElementLengthFilter.hh:43]: (warning) The class 'SSElementLengthFilter' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/simple_moves/BBDihedralSamplerMover.hh:134]: (performance) Function parameter 'name_of_last_sampler_used' should be passed by reference. [passedByValue]
[protocols/simple_moves/BBDihedralSamplerMover.hh:42]: (warning) The class 'BBDihedralSamplerMover' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/simple_moves/SmoothFragmentMover.cc:67]: (performance) Function parameter 'move_type' should be passed by reference. [passedByValue]
[protocols/simple_moves/SymmetricFragmentMover.hh:110]: (performance) Function parameter 'type' should be passed by reference. [passedByValue]
[protocols/simple_moves/SymmetricFragmentMover.hh:74]: (performance) Function parameter 'type' should be passed by reference. [passedByValue]
[protocols/simple_moves/bin_transitions/InitializeByBins.hh:49]: (warning) The class 'InitializeByBins' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/simple_moves/bin_transitions/PerturbByBins.hh:49]: (warning) The class 'PerturbByBins' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/simple_moves/sidechain_moves/JumpRotamerSidechainMover.hh:40]: (warning) The class 'JumpRotamerSidechainMover' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/simple_moves/sidechain_moves/PerturbChiSidechainMover.hh:39]: (warning) The class 'PerturbChiSidechainMover' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/simple_moves/sidechain_moves/PerturbRotamerSidechainMover.hh:41]: (warning) The class 'PerturbRotamerSidechainMover' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/splice/RotLibOut.hh:43]: (performance) Function parameter 's' should be passed by reference. [passedByValue]
[protocols/splice/RotLibOut.hh:45]: (performance) Function parameter 's' should be passed by reference. [passedByValue]
[protocols/stepwise/monte_carlo/mover/StepWiseMasterMover.hh:47]: (warning) The class 'StepWiseMasterMover' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/symmetry/SetupForSymmetryMover.cc:114]: (warning) Member variable 'SetupForSymmetryMover::cryst1_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetry/SetupForSymmetryMover.cc:114]: (warning) Member variable 'SetupForSymmetryMover::keep_pdb_info_labels_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetry/SetupForSymmetryMover.cc:114]: (warning) Member variable 'SetupForSymmetryMover::preserve_datacache_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetry/SetupForSymmetryMover.cc:114]: (warning) Member variable 'SetupForSymmetryMover::refinable_lattice_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetry/SetupForSymmetryMover.cc:114]: (warning) Member variable 'SetupForSymmetryMover::refinable_lattice_was_set_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetry/SetupForSymmetryMover.cc:114]: (warning) Member variable 'SetupForSymmetryMover::set_global_symmetry_at_parsetime_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetry/SetupForSymmetryMover.cc:114]: (warning) Member variable 'SetupForSymmetryMover::slide_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetry/SetupForSymmetryMover.cc:71]: (warning) Member variable 'SetupForSymmetryMover::cryst1_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetry/SetupForSymmetryMover.cc:71]: (warning) Member variable 'SetupForSymmetryMover::keep_pdb_info_labels_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetry/SetupForSymmetryMover.cc:71]: (warning) Member variable 'SetupForSymmetryMover::preserve_datacache_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetry/SetupForSymmetryMover.cc:71]: (warning) Member variable 'SetupForSymmetryMover::refinable_lattice_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetry/SetupForSymmetryMover.cc:71]: (warning) Member variable 'SetupForSymmetryMover::refinable_lattice_was_set_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetry/SetupForSymmetryMover.cc:71]: (warning) Member variable 'SetupForSymmetryMover::set_global_symmetry_at_parsetime_' is not initialized in the constructor. [uninitMemberVar]
[protocols/symmetry/SetupForSymmetryMover.cc:71]: (warning) Member variable 'SetupForSymmetryMover::slide_' is not initialized in the constructor. [uninitMemberVar]
[protocols/topology_broker/ClaimerMessage.cc:55]: (performance) Function parameter 'label' should be passed by reference. [passedByValue]
[protocols/topology_broker/CutBiasClaimer.cc:64]: (performance) Function parameter 'label' should be passed by reference. [passedByValue]
[protocols/topology_broker/RigidChunkClaimer.hh:50]: (performance) Function parameter 'to' should be passed by reference. [passedByValue]
[protocols/topology_broker/SymmetryClaimer.hh:45]: (warning) The class 'SymmetryClaimer' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
[protocols/topology_broker/TemplateJumpClaimer.cc:66]: (performance) Function parameter 'config_file' should be passed by reference. [passedByValue]
[protocols/topology_broker/TopologyClaimer.cc:106]: (performance) Function parameter 'tag' should be passed by reference. [passedByValue]
