scons: Reading SConscript files ...
Running versioning script ... Done. (0.3 seconds)
file ./options.dox being updated
file ./full-options-list.md being updated
Number of option files updated: 2
Total 4725 options.
Updating submodules needed for compilation.
Finished updating ResidueProperty code
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Finished updating VariantType code
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scons: done reading SConscript files.
scons: Building targets ...
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/peptide_deriver/PeptideDeriverMarkdownStreamOutputter.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -O3 -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/clang/10.0 -Isrc/platform/linux/64/clang -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/peptide_deriver/PeptideDeriverMarkdownStreamOutputter.cc
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/jd2/AtomTreeDiffJobOutputter.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -O3 -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/clang/10.0 -Isrc/platform/linux/64/clang -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/jd2/AtomTreeDiffJobOutputter.cc
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/jd2/SerializedPoseJobInputter.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -O3 -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/clang/10.0 -Isrc/platform/linux/64/clang -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/jd2/SerializedPoseJobInputter.cc
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/jd2/SerializedPoseJobOutputter.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -O3 -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/clang/10.0 -Isrc/platform/linux/64/clang -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/jd2/SerializedPoseJobOutputter.cc
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/jobdist/JobDistributors.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -O3 -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/clang/10.0 -Isrc/platform/linux/64/clang -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/jobdist/JobDistributors.cc
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/core/init/init.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -O3 -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/clang/10.0 -Isrc/platform/linux/64/clang -Isrc/platform/linux/64 -Isrc/platform/linux src/core/init/init.cc
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/crash_report.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -O3 -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/clang/10.0 -Isrc/platform/linux/64/clang -Isrc/platform/linux/64 -Isrc/platform/linux src/utility/crash_report.cc
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/core/io/mmtf/mmtf_writer.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -O3 -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/clang/10.0 -Isrc/platform/linux/64/clang -Isrc/platform/linux/64 -Isrc/platform/linux src/core/io/mmtf/mmtf_writer.cc
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/core/io/pose_to_sfr/PoseToStructFileRepConverter.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -O3 -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/clang/10.0 -Isrc/platform/linux/64/clang -Isrc/platform/linux/64 -Isrc/platform/linux src/core/io/pose_to_sfr/PoseToStructFileRepConverter.cc
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ProtocolFeatures.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -O3 -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/clang/10.0 -Isrc/platform/linux/64/clang -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/features/ProtocolFeatures.cc
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/libutility.so -stdlib=libstdc++ -shared -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/backtrace.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/Binary_Util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/crash_report.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/CSI_Sequence.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/curl.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/dating.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/exit.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/heap.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/inline_file_provider.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/integer_mapping.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/json_utilities.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/LexicographicalIterator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/mpi_util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/SimulateMPI.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/sys_util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/recent_history_queue.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/static_database.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/string_util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/vector0.srlz.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/vector1.srlz.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/VirtualBase.srlz.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/boinc/boinc_util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/excn/Exceptions.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/file/file_sys_util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/file/FileName.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/file/gzip_util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/file/PathName.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/graph/ArrayPool.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/graph/DisjointSets.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/graph/Digraph.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/graph/Graph.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/graph/graph_util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/graph/LowMemGraph.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/io/FileContentsMap.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/io/GeneralFileManager.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/io/icstream.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/io/izstream.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/io/ocstream.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/io/ozstream.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/io/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/io/base64.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/io/tarparser.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/keys/Key.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/keys/Key2Tuple.srlz.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/keys/Key3Tuple.srlz.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/keys/Key4Tuple.srlz.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/libsvm/Svm_rosetta.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/libsvm/Svm.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/json_spirit/json_spirit_reader.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/json_spirit/json_spirit_value.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/json_spirit/json_spirit_writer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/json_spirit/json_spirit_tools.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/BooleanOption.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/BooleanVectorOption.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/FileOption.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/FileVectorOption.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/IntegerOption.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/IntegerVectorOption.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/Option.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/OptionCollection.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/PathOption.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/PathVectorOption.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/RealOption.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/RealVectorOption.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/ResidueChainVectorOption.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/ScalarOption.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/StringOption.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/StringVectorOption.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/VectorOption.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/mpi_stderr.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/keys/OptionKeyList.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/keys/OptionKeys.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/keys/AnyOptionKey.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/keys/AnyVectorOptionKey.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/keys/BooleanOptionKey.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/keys/BooleanVectorOptionKey.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/keys/FileOptionKey.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/keys/FileVectorOptionKey.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/keys/IntegerOptionKey.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/keys/IntegerVectorOptionKey.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/keys/OptionKey.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/keys/PathOptionKey.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/keys/PathVectorOptionKey.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/keys/RealOptionKey.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/keys/RealVectorOptionKey.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/keys/ResidueChainVectorOptionKey.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/keys/ScalarOptionKey.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/keys/StringOptionKey.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/keys/StringVectorOptionKey.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/options/keys/VectorOptionKey.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/py/PyExitCallback.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/serialization/serialization.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/serialization/ObjexxFCL/DynamicIndexRange.srlz.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/serialization/ObjexxFCL/FArray1D.srlz.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/serialization/ObjexxFCL/FArray2D.srlz.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/serialization/ObjexxFCL/FArray3D.srlz.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/serialization/ObjexxFCL/ubyte.srlz.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/sql_database/DatabaseSessionManager.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/sql_database/types.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/tag/Tag.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/tag/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/tag/XMLSchemaGeneration.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/tag/XMLSchemaValidation.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/thread/ReadWriteMutex.os build/src/release/linux/5.4/64/x86/clang/10.0/default/utility/xsd_util/util.os -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/libnumeric.so -stdlib=libstdc++ -shared -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/agglomerative_hierarchical_clustering.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/Calculator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/ClusteringTreeNode.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/color_util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/constants.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/cubic_polynomial.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/cyclic_coordinate_descent.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/DiscreteIntervalEncodingTree.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/HomogeneousTransform.srlz.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/MathMatrix.srlz.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/MathVector.srlz.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/MultiDimensionalHistogram.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/polynomial.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/prob_util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/roc_curve.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/xyz.serialization.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/zscores.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/alignment/rmsd_calc.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/crick_equations/BundleParams.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/crick_equations/HelixParams.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/expression_parser/Arithmetic.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/fourier/FFT.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/fourier/kiss_fft.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/fourier/kiss_fft_state.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/fourier/SHT.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/geometry/BoundingBox.srlz.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/geometry/projection_area.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/geometry/ring_plane.functions.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/geometry/hashing/MinimalClashHash.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/geometry/hashing/SixDHasher.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/geometry/hashing/xyzStripeHash.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/interpolation/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/interpolation/Histogram.srlz.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/interpolation/spline/BicubicSpline.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/interpolation/spline/CompoundInterpolator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/interpolation/spline/CubicSpline.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/interpolation/spline/Interpolator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/interpolation/spline/SimpleInterpolator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/interpolation/spline/spline_functions.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/interpolation/spline/SplineGenerator.os 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build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/linear_algebra/minimum_bounding_ellipse.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/model_quality/functions.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/model_quality/maxsub.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/model_quality/rms.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/model_quality/RmsData.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/nls/lmmin.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/random/random.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/random/random_xyz.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/random/WeightedSampler.os build/src/release/linux/5.4/64/x86/clang/10.0/default/numeric/statistics/functions.os -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default 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clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/libbasic.so -stdlib=libstdc++ -shared -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/basic.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/ComparingTracer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/Emitter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/execute.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/interpolate.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/init.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/MemTracer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/MetricValueIO.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/prof.os 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build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/random/init_random_generator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/random/RandomGeneratorSettings.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/resource_manager/loader_schemas.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/resource_manager/ResourceLoader.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/resource_manager/ResourceLoaderCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/resource_manager/ResourceLoaderFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/resource_manager/ResourceLocator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/resource_manager/ResourceLocatorCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/resource_manager/ResourceLocatorFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/resource_manager/ResourceManager.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/resource_manager/ResourceManagerCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/resource_manager/ResourceManagerFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/resource_manager/locator/DatabaseResourceLocator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/resource_manager/locator/FileListResourceLocator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/resource_manager/locator/FileSystemResourceLocator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/resource_manager/locator/locator_schemas.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/resource_manager/locator/NullResourceLocator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/resource_manager/locator/StringResourceStream.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/sampling/orientations/QuaternionGrid.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/svd/SVD_Solver.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/tensorflow_manager/RosettaTensorflowManager.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/tensorflow_manager/RosettaTensorflowProtocolBase.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/tensorflow_manager/RosettaTensorflowSessionContainer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/tensorflow_manager/RosettaTensorflowTensorContainer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/tensorflow_manager/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/thread_manager/RosettaThread.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/thread_manager/RosettaThreadAllocation.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/thread_manager/RosettaThreadAssignmentInfo.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/thread_manager/RosettaThreadPool.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/thread_manager/RosettaThreadManager.os build/src/release/linux/5.4/64/x86/clang/10.0/default/basic/thread_manager/RosettaThreadManagerInitializationTracker.os -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/libcore.1.so -stdlib=libstdc++ -shared -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/core/dummy.os -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/libcore.2.so -stdlib=libstdc++ -shared -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/core/chemical/AA.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/chemical/Adduct.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/chemical/adduct_util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/chemical/Atom.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/chemical/AtomICoor.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/chemical/AtomProperties.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/chemical/AtomPropertiesManager.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/chemical/AtomProperty_mappings.os 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build/src/release/linux/5.4/64/x86/clang/10.0/default/core/sequence/CompassScoringScheme.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/sequence/CompositeScoringScheme.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/sequence/CompositeSequence.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/sequence/DerivedSequenceMapping.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/sequence/DP_Matrix.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/sequence/DPScoringScheme.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/sequence/L1ScoringScheme.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/sequence/MatrixScoringScheme.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/sequence/MCAligner.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/sequence/NWAligner.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/sequence/PairScoringScheme.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/sequence/ProfSimScoringScheme.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/sequence/ScoringScheme.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/sequence/ScoringSchemeFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/sequence/Sequence.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/sequence/SequenceAlignment.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/sequence/SequenceCoupling.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/sequence/SequenceCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/sequence/SequenceFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/sequence/SequenceProfile.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/sequence/SimpleScoringScheme.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/sequence/SSManager.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/sequence/SWAligner.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/sequence/sequence_motif.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/sequence/util.os -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -lbasic -lnumeric -lcore.1 -lcore.2 -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/libcore.4.so -stdlib=libstdc++ -shared -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/RNA_CoarseDistEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/FACTSEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/AACompositionEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/AARepeatEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/ArgCationPiEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/XtalMLEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/CentroidDisulfideEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/DisulfideMatchingEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/FullatomDisulfideEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/DNAChiEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/DNATorsionEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/FA_ElecEnergyAroAll.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/FA_ElecEnergyAroAro.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/RNA_FA_ElecEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/FA_GrpElecEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/DEEREnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/ElecDensAllAtomCenEnergy.os 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build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/MPHelicalityEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/MPSpanInsertionEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/MPSpanAngleEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/AromaticBackboneRestraintEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/AspartimidePenaltyEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/BranchEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/BurialEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/Burial_v2Energy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/CartesianBondedEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/CenHBEnergy.os 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build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/DEPC_MS_Energy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/DirectReadoutEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/DistanceChainbreakEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/DNA_BaseEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/DNA_EnvPairEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/DNA_DihedralEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/DNA_ReferenceEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/EnvEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/EnvSmoothEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/Fa_MbenvEnergy.os 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build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/HybridVDW_Energy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/HydroxylTorsionEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/IntermolEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/LinearBranchEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/LinearBranchEnergyCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/LinearChainbreakEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/LinearChainbreakEnergyCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/LK_PolarNonPolarEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/LK_hack.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/MembraneCbetaEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/MembraneCenPairEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/MembraneEnvEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/MembraneEnvPenalties.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/MembraneEnvSmoothEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/MembraneLipo.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/MissingEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/MotifDockEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/RingClosureEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/OmegaTetherEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/energy_methods/OtherPoseEnergy.os 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build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/rotamer_set/water_rotamer_building_functions.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/rotamer_set/WaterAnchorInfo.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/rotamer_set/WaterPackingInfo.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/rotamer_set/symmetry/SymmetricRotamerSet_.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/rotamer_set/symmetry/SymmetricRotamerSets.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/rotamers/SingleBasicRotamerLibrary.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/rotamers/SingleLigandRotamerLibrary.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/rotamers/SingleLigandRotamerLibraryCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/rotamers/SingleNCAARotamerLibraryCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/rotamers/SingleResidueRotamerLibrary.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/rotamers/SingleResidueRotamerLibraryCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/rotamers/SingleResidueRotamerLibraryFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/rotamers/StoredRotamerLibraryCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/scmin/AtomTreeCollection.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/scmin/AtomTreeSCMinMinimizerMap.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/scmin/CartSCMinMinimizerMap.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/scmin/SCMinMultifunc.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/scmin/CartSCMinMultifunc.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/scmin/SidechainStateAssignment.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/IGEdgeReweightContainer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/PackerTask.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/PackerTask_.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/ResidueLevelTask.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/ResidueLevelTask_.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/ResfileReader.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/RotamerSampleOptions.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/TaskFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/xml_util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/rna/RNA_ResidueLevelTask.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/operation/ClashBasedRepackShell.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/operation/DesignRestrictions.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/operation/EnableMultiCoolAnnealer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/operation/EnableSmartAnnealer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/operation/FillAUTOTaskOperation.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/operation/KeepSequenceSymmetry.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/operation/NoRepackDisulfides.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/operation/OperateOnCertainResidues.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/operation/OperateOnResidueSubset.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/operation/OptCysHG.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/operation/OptH.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/operation/parsing_utilities.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/operation/ReplicateTask.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/operation/ResFilterFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/operation/ResFilters.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/operation/ResLvlTaskOperationFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/operation/ResLvlTaskOperations.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/operation/RestrictInteractionGraphThreadsOperation.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/operation/TaskOperation.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/operation/TaskOperationFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/operation/TaskOperations.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/operation/task_op_schemas.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/pack/task/residue_selector/ClashBasedShellSelector.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/util/ChainbreakUtil.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/util/cryst_util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/util/disulfide_util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/util/kinematics_util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/util/metalloproteins_util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/util/SwitchResidueTypeSet.os -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc 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clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/libcore.6.so -stdlib=libstdc++ -shared -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/core/enzymes/consensus_sequence_parsers.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/enzymes/database_io.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/enzymes/EnzymeManager.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/fragment/BBTorsionAndAnglesSRFD.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/fragment/BBTorsionSRFD.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/fragment/ConstantLengthFragSet.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/fragment/FragData.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/fragment/FragID.os 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build/src/release/linux/5.4/64/x86/clang/10.0/default/core/fragment/JumpSRFD.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/fragment/MinimalFragSet.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/fragment/OrderedFragSet.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/fragment/SecondaryStructure.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/fragment/SecstructSRFD.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/fragment/SingleResidueFragData.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/fragment/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/fragment/rna/FragmentLibrary.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/fragment/rna/FullAtomRNA_Fragments.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/fragment/rna/RNA_FragmentHomologyExclusion.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/fragment/rna/RNA_Fragments.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/fragment/rna/TorsionSet.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/fragment/picking_old/FragmentLibraryManager.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/fragment/picking_old/vall/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/fragment/picking_old/vall/vall_io.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/fragment/picking_old/vall/VallLibrarian.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/fragment/picking_old/vall/VallResidue.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/fragment/picking_old/vall/eval/ABEGOEval.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/fragment/picking_old/vall/eval/EnergyEval.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/fragment/picking_old/vall/eval/IdentityEval.os 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build/src/release/linux/5.4/64/x86/clang/10.0/default/core/import_pose/libraries/RNA_LibraryManager.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/import_pose/options/RNA_BasicOptions.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/import_pose/options/RNA_DeNovoProtocolOptions.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/import_pose/options/RNA_FragmentMonteCarloOptions.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/import_pose/options/RNA_MinimizerOptions.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/import_pose/atom_tree_diffs/atom_tree_diff.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/import_pose/pose_stream/ExtendedPoseInputStream.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/import_pose/pose_stream/LazySilentFilePoseInputStream.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/import_pose/pose_stream/MetaPoseInputStream.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/import_pose/pose_stream/PDBPoseInputStream.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/import_pose/pose_stream/PoseInputStream.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/import_pose/pose_stream/SilentFilePoseInputStream.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/import_pose/pose_stream/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/init/init.os build/src/release/linux/5.4/64/x86/clang/10.0/default/core/init/score_function_corrections.os -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -lcore.1 -lcore.2 -lcore.3 -lcore.4 -lcore.5 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/libprotocols.1.so -stdlib=libstdc++ -shared -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/checkpoint/Checkpoint.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/checkpoint/CheckPointer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/constraint_generator/AddConstraints.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/constraint_generator/AtomPairConstraintGenerator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/constraint_generator/CoordinateConstraintGenerator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/constraint_generator/ConstraintGenerator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/constraint_generator/ConstraintGeneratorFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/constraint_generator/ConstraintsManager.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/constraint_generator/ConstraintsMap.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/constraint_generator/DihedralConstraintGenerator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/constraint_generator/DistanceConstraintGenerator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/constraint_generator/HydrogenBondConstraintGenerator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/constraint_generator/MembraneSpanConstraintGenerator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/constraint_generator/MetalContactsConstraintGenerator.os 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build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/moves/MoveMapMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/moves/Mover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/moves/MoverApplyingMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/moves/MoverContainer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/moves/MoverCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/moves/MoverFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/moves/MoverForPoseList.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/moves/MoverStatistics.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/moves/MoverStatus.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/moves/mover_schemas.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/moves/NullMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/moves/OutputMovers.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/moves/PyMOLMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/moves/RampingMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/moves/RepeatMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/moves/ReplicaExchangeMC.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/moves/ResId.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/moves/SimulatedTempering.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/moves/StructureRestrictor.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/moves/TrialCounter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/moves/TrialMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/moves/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/moves/VectorPoseMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/moves/WhileMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/network/cloud.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/network/hal.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/network/ui_mover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/network/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/parser/BluePrint.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/parser/ConstraintGeneratorLoader.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/parser/DatabaseSessionLoader.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/parser/DataLoader.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/parser/DataLoaderCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/parser/DataLoaderFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/parser/FragmentReader.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/parser/FragSetLoader.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/parser/JumpSelectorLoader.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/parser/MonteCarloLoader.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/parser/MoveMapFactoryLoader.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/parser/PackerPaletteLoader.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/parser/ResidueSelectorLoader.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/parser/ResLvlTaskOperationLoader.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/parser/ScoreFunctionLoader.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/parser/SimpleMetricLoader.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/parser/TaskOperationLoader.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rosetta_scripts/AdditionalOutputWrapper.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rosetta_scripts/MultipleOutputWrapper.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rosetta_scripts/MultiplePoseMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rosetta_scripts/ParsedProtocol.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rosetta_scripts/PosePropertyReporter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rosetta_scripts/PosePropertyReporterCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rosetta_scripts/PosePropertyReporterFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rosetta_scripts/PoseSelector.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rosetta_scripts/PoseSelectorCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rosetta_scripts/PoseSelectorFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rosetta_scripts/RosettaScriptsJobQueen.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rosetta_scripts/RosettaScriptsParser.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rosetta_scripts/RosettaScriptsSchemaValidator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rosetta_scripts/SavePoseMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rosetta_scripts/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rosetta_scripts/XmlObjects.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sasa_scores/sasapack.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/trajectory/DbTrajectoryReader.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/trajectory/DbTrajectoryWriter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/viewer/ConformationViewer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/viewer/marchingCubes.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/viewer/SilentObserver.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/viewer/triangleIterator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/viewer/viewers.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/viewer/visualize.os -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/libprotocols_b.2.so -stdlib=libstdc++ -shared -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pdbinfo_manipulations/AlignPDBInfoToSequences.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pdbinfo_manipulations/AlignPDBInfoToSequencesUtil.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/flexpack/FlexPacker.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/flexpack/OtherContextScoreFunction.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/flexpack/annealer/FlexbbSimAnnealer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/flexpack/interaction_graph/FlexbbIGFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/flexpack/interaction_graph/FlexbbInteractionGraph.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/flexpack/interaction_graph/MinimalistFlexbbInteractionGraph.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/flexpack/interaction_graph/OTFFlexbbInteractionGraph.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/flexpack/interaction_graph/PrecomputedFlexbbInteractionGraph.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/flexpack/rotamer_set/FlexbbRotamerSet.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/flexpack/rotamer_set/FlexbbRotamerSets.os -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/libprotocols_a.2.so -stdlib=libstdc++ -shared -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/boinc/boinc.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/boinc/BoincPoseObserver.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/boinc/watchdog.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/frags/heap.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/frags/TorsionFragment.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/frags/VallData.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/genetic_algorithm/Entity.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/genetic_algorithm/EntityRandomizer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/genetic_algorithm/GeneticAlgorithm.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/genetic_algorithm/Mutate1Randomizer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rpc/rpc.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/trRosetta/trRosettaMultipleSequenceAlignment.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/trRosetta/trRosettaOutputsBase.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/trRosetta/trRosettaOutputs_v1.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/trRosetta/trRosettaProtocolBase.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/trRosetta/trRosettaProtocol_v1.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/wum/DatabaseEntryWorkUnit.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/wum/MoverList.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/wum/MPI_WorkUnitManager.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/wum/MPI_WorkUnitManager_Slave.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/wum/SilentStructStore.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/wum/WorkUnitBase.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/wum/WorkUnitList.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/wum/WorkUnitManager.os -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/libprotocols.3.so -stdlib=libstdc++ -shared -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_pose_metric_calculators/BuriedUnsatisfiedPolarsCalculator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_pose_metric_calculators/NumberHBondsCalculator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/aa_composition/AddCompositionConstraintMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/aa_composition/AddMHCEpitopeConstraintMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/aa_composition/AddNetChargeConstraintMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/aa_composition/AddHelixSequenceConstraintsMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/aa_composition/ClearCompositionConstraintsMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/aa_composition/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/backbone_moves/RandomizeBBByRamaPrePro.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/backbone_moves/local_backbone_mover/LocalBackboneMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/backbone_moves/local_backbone_mover/FreePeptide.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/backbone_moves/local_backbone_mover/GapCloser.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/backbone_moves/local_backbone_mover/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/backbone_moves/local_backbone_mover/gap_solution_pickers/GapSolutionPicker.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/backbone_moves/local_backbone_mover/gap_solution_pickers/RandomGapSolutionPicker.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/backbone_moves/local_backbone_mover/free_peptide_movers/FreePeptideMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/backbone_moves/local_backbone_mover/free_peptide_movers/TranslationFreePeptideMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/backbone_moves/local_backbone_mover/free_peptide_movers/LongAxisRotationFreePeptideMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/backbone_moves/local_backbone_mover/free_peptide_movers/ShearFreePeptideMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/backbone_moves/local_backbone_mover/free_peptide_movers/CircularPermuteFreePeptideMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/backrub/BackrubMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/backrub/BackrubProtocol.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/backrub/BackrubSegment.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/backrub/BackrubSidechainMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/backrub/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/boinc/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/branch_angle/BranchAngleOptimizer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/canonical_sampling/DbTrajectoryRecorder.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/canonical_sampling/AsyncMPITemperingBase.os 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build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/SampleSequenceFromProbabilities.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/SaveProbabilitiesMetricMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/ScoreMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/SequenceProfileMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/SetTorsion.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/SetupMetalsMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/SimpleThreadingMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/SixDoFGridDockMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/ShakeStructureMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/ShortBackrubMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/StorePoseSnapshot.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/SmoothFragmentMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/StructProfileMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/SuperimposeMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/SwitchResidueTypeSetMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/SymmetricFragmentMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/TailsScoreMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/TorsionDOFMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/TorsionSetMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/Tumble.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/UniformPositionMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/VirtualRootMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/WriteSSEMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/WobbleMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/asym_fold_and_dock/AsymFoldandDockMoveRbJumpMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/asym_fold_and_dock/AsymFoldandDockRbTrialMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/bb_sampler/BBDihedralSampler.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/bb_sampler/SmallBBSampler.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/bb_sampler/SugarBBSampler.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/bin_transitions/InitializeByBins.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/bin_transitions/PerturbByBins.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/chiral/ChiralMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/rational_mc/RationalMonteCarlo.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/sidechain_moves/JumpRotamerSidechainMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/sidechain_moves/PerturbChiSidechainMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/sidechain_moves/PerturbRotamerSidechainMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/sidechain_moves/SidechainMCMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/sidechain_moves/SidechainMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/sidechain_moves/SidechainMoverBase.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_moves/sidechain_moves/SetChiMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_task_operations/InterfaceTaskOperation.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_task_operations/RestrictToLoops.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_task_operations/RestrictToLoopsAndNeighbors.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_task_operations/RestrictToInterface.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/Cluster.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/CalcInterNeighborGroup.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/DecoySetEvaluation.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/EnergyLandscapeEvaluator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/IGEdgeReweighters.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/InteratomicVarianceMatrix.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/KCluster.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/NetworkAlgorithms.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/PyReturnValuePolicyTest.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/superimpose.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/match_enzdes_util/AlignPoseToInvrotTreeMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/match_enzdes_util/AllowedSeqposForGeomCst.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/match_enzdes_util/EnzConstraintIO.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/match_enzdes_util/EnzConstraintParameters.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/match_enzdes_util/EnzCstTemplateRes.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/match_enzdes_util/EnzdesCacheableObserver.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/match_enzdes_util/EnzdesCstCache.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/match_enzdes_util/EnzdesLoopsFile.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/match_enzdes_util/EnzdesSeqRecoveryCache.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/match_enzdes_util/ExternalGeomSampler.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/match_enzdes_util/InvrotTarget.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/match_enzdes_util/InvrotTree.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/match_enzdes_util/InvrotTreeNode.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/match_enzdes_util/InvrotTreeNodeBase.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/match_enzdes_util/LigandConformer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/match_enzdes_util/MatchConstraintFileInfo.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/match_enzdes_util/util_functions.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/pose_manipulation/pose_manipulation.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/rigid_body/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/rotamer_set_operations/RigidBodyMoveRotSetOps.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/rotamer_set_operations/SpecialRotamerRotSetOps.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/rotamer_set_operations/AddGood2BPairEnergyRotamers.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/toolbox/sample_around/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/vardist_solaccess/VarSolDRotamerDots.os -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/libprotocols.4.so -stdlib=libstdc++ -shared -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/analysis/GlycanInfoMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/analysis/InterfaceAnalyzerMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/analysis/LoopAnalyzerMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/analysis/LoopAnalyzerFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/analysis/PackStatMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/analysis/burial_metrics/PolarGroupBurialPyMolStringMetric.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/analysis/simple_metrics/ConstraintsMetric.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/analysis/simple_metrics/RunSimpleMetricsMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/analysis/simple_metrics/SequenceRecoveryMetric.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/monte_carlo/ResetBaselineMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/monte_carlo/GenericMonteCarloMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/monte_carlo/GenericSimulatedAnnealer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/monte_carlo/MonteCarloInterface.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/monte_carlo/MonteCarloRecover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/monte_carlo/MonteCarloTest.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/monte_carlo/MonteCarloReset.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/carbohydrates/CreateGlycanSequonMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/carbohydrates/GlycanSampler.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/carbohydrates/GlycanTreeMinMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/carbohydrates/GlycanTreeModeler.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/carbohydrates/LinkageConformerMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/carbohydrates/IdealizeAnomericHydrogens.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/carbohydrates/RingPlaneFlipMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/carbohydrates/SimpleGlycosylateMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/carbohydrates/TautomerizeAnomerMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/carbohydrates/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cutoutdomain/CutOutDomain.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pb_potential/SetupPoissonBoltzmannPotential.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_ddg/DdgFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_ddg/ddG.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_ddg/AlaScan.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_ddg/DdGScan.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_ddg/SSElementBisectddGFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/simple_ddg/InterfaceBindingEnergyDensityFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/calc_taskop_movers/ForceDisulfidesMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/calc_taskop_movers/ConsensusDesignMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/calc_taskop_movers/DesignRepackMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/calc_taskop_movers/CreateSequenceMotifMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/calc_taskop_filters/SigmoidFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/calc_taskop_filters/MultipleSigmoidsFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/calc_taskop_filters/OperatorFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/calc_taskop_filters/ConservedPosMutationFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/calc_taskop_filters/RelativePoseFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/calc_taskop_filters/RotamerBoltzmannWeight.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/calc_taskop_filters/RotamerBoltzmannWeight2.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/normalmode/NormalMode.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/normalmode/NormalModeMinimizer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/normalmode/NormalModeMultiFunc.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/normalmode/NormalModeRelaxMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/frag_picker/BestTotalScoreSelector.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/frag_picker/CompositeFragmentSelector.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/frag_picker/ContactTypes.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/frag_picker/CS2ndShift.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/frag_picker/CSTalosIO.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/frag_picker/CustomScoreSelector.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/frag_picker/DiversifyCrmsdByClustering.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/frag_picker/DiversifyCrmsdSelector.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/frag_picker/DiversifyDihedralsSelector.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/frag_picker/Faraggi_SA.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/frag_picker/FragmentCandidate.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/frag_picker/FragmentPicker.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/frag_picker/FragmentScoreFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/frag_picker/JCouplingIO.os 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build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_metric_calculators/HPatchCalculator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_metric_calculators/InterGroupNeighborsCalculator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_metric_calculators/MetricValueGetter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_metric_calculators/NeighborhoodByDistanceCalculator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_metric_calculators/NeighborsByDistanceCalculator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_metric_calculators/NonlocalContactsCalculator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_metric_calculators/PackstatCalculator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_metric_calculators/PiPiCalculator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_metric_calculators/ResidueDecompositionByChainCalculator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_metric_calculators/ResidueDecompositionCalculator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_metric_calculators/RotamerBoltzCalculator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_metric_calculators/RotamerRecovery.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_metric_calculators/SaltBridgeCalculator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_metric_calculators/SemiExplicitWaterUnsatisfiedPolarsCalculator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_metric_calculators/SequenceComparison.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_metric_calculators/SHOBuriedUnsatisfiedPolarsCalculator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_metric_calculators/SurfaceCalculator.os -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -lprotocols.3 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/libprotocols_f.5.so -stdlib=libstdc++ -shared -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/contact_map/ContactMap.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/kinmatch/FunGroupTK.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/make_rot_lib/MakeRotLibJob.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/make_rot_lib/MakeRotLibJobInputter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/make_rot_lib/MakeRotLibMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/make_rot_lib/MakeRotLibOptionsData.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/make_rot_lib/RotData.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/RotamerDump/RotamerDumpMover.os -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -lprotocols.4 -lprotocols.3 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/libprotocols_e.5.so -stdlib=libstdc++ -shared -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/buns/BuriedUnsatisfiedPolarsCalculator2.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/buns/BuriedUnsatHbondFilter2.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pmut_scan/AlterSpecDisruptionDriver.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pmut_scan/Mutant.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pmut_scan/PointMutScanDriver.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sparta/ANN.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sparta/ChemicalShiftEvaluator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sparta/ChemicalShiftEvaluatorCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sparta/GDB.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sparta/PDB.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sparta/Sparta.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sparta/SpartaUtil.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sparta/util.os -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -lprotocols.4 -lprotocols.3 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/libprotocols_a.5.so -stdlib=libstdc++ -shared -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/anchored_design/Anchor.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/anchored_design/AnchorMovers.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/anchored_design/AnchorMoversData.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/dna/DesignProteinBackboneAroundDNA.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/dna/DnaChains.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/dna/DnaDesignDef.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/dna/DnaInterfaceFinder.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/dna/DnaInterfaceMinMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/dna/DnaInterfaceMultiStateDesign.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/dna/DnaInterfacePacker.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/dna/DNAParameters.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/dna/PDBOutput.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/dna/RestrictDesignToProteinDNAInterface.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/dna/RotamerDNAHBondFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/dna/SeparateDnaFromNonDna.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/dna/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/dna/WatsonCrickRotamerCouplings.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/grafting/AnchoredGraftMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/grafting/CCDEndsGraftMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/grafting/GraftMoverBase.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/grafting/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/grafting/simple_movers/DeleteRegionMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/grafting/simple_movers/InsertPoseIntoPoseMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/grafting/simple_movers/KeepRegionMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/grafting/simple_movers/ReplaceRegionMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/helix_capper/HelixNCapperMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/metal_interface/AddZincSiteConstraints.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/metal_interface/FindClosestAtom.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/metal_interface/MatchGrafter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/metal_interface/MetalSiteResidue.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/metal_interface/RemoveMetalConnectionsMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/metal_interface/ZincHeterodimerMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/metal_interface/ZincSiteFinder.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/neighbor/Neighborhood.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/multistate_design/MetricCalculatorFitnessFunction.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/multistate_design/MultiStateAggregateFunction.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/multistate_design/MultiStateEntity.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/multistate_design/MultiStateFitnessFunction.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/multistate_design/MultiStatePacker.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/multistate_design/PackingState.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/multistate_design/PartitionAggregateFunction.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/multistate_design/SingleState.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/multistate_design/SingleStateEntityData.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/multistate_design/SingleStateFitnessFunction.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/multistate_design/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ncbb/oop/OopDockDesignProtocol.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ncbb/oop/OopCreatorMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ncbb/oop/OopPuckMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ncbb/oop/OopMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ncbb/oop/OopPatcher.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ncbb/oop/OopRandomPuckMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ncbb/oop/OopRandomSmallMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ncbb/a3b_hbs/A3BHbsPatcher.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ncbb/hbs/HbsPatcher.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ncbb/triazolamer/TriazolamerMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ncbb/triazolamer/TriazolamerRandomSmallMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ncbb/NcbbDockDesignProtocol.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ncbb/PeptideStapleMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ncbb/ResidueReplacementRebuildMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ncbb/SecStructFinder.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ncbb/SecStructMinimizeMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ncbb/SecStructMinimizeMultiFunc.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ncbb/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pack_daemon/DynamicAggregateFunction.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pack_daemon/EntityCorrespondence.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pack_daemon/MultistateAggregateFunction.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pack_daemon/MultistateFitnessFunction.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pack_daemon/PackDaemon.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pack_daemon/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_sewing/strong_types.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_sewing/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_sewing/data_storage/DsspShiftArray.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_sewing/data_storage/PoseSegment.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_sewing/data_storage/PoseWithTerminalSegmentsOfKnownDSSP.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_sewing/data_storage/SegmentEnvelope.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_sewing/data_storage/TerminalDSSPSortedPoseVector.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_sewing/filters/CoreScorer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_sewing/filters/HasDisulfideFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_sewing/movers/AddFlankingVirtualResiduesMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_sewing/movers/BlockwiseAnalysisMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_sewing/movers/OmnibusDisulfideAnalysisLabelerMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_sewing/movers/PickRandomSegmentMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_sewing/movers/SewAnythingAddMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_sewing/simple_metrics/BlockwisePoseCompMotifMetric.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_sewing/simple_metrics/BlockwiseShapeCompMetric.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_sewing/simple_metrics/MinimumInterAlphaDistanceMetric.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_sewing/simple_metrics/WindowPoseCompMotifMetric.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/vip/VIP_Mover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/vip/VIP_Report.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/vip/VIP_Utils.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/movers/AssemblyMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/movers/AppendAssemblyMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/movers/LigandBindingAssemblyMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/data_storage/SmartSewingResidue.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/data_storage/SmartSegment.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/data_storage/LigandSegment.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/data_storage/LigandResidue.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/data_storage/SmartAssembly.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/data_storage/HashedSmartAssembly.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/data_storage/Basis.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/scoring/LigandAssemblyScorer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/scoring/AssemblyScorerFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/scoring/LigandScorer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/scoring/MotifScorer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/scoring/TopNMotifScorer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/scoring/InterModelMotifScorer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/scoring/PartnerMotifScorer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/scoring/SubsetPartnerMotifScorer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/scoring/SegmentContactOrderScorer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/scoring/TerminusMotifScorer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/scoring/IntraDesignTerminusMotifScorer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/scoring/StartingNodeMotifScorer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/requirements/LigandAssemblyRequirement.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/requirements/AssemblyRequirementFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/requirements/ClashRequirement.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/requirements/KeepLigandContactsRequirement.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/requirements/LigandClashRequirement.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/requirements/DsspSpecificLengthRequirement.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/requirements/LengthInResiduesRequirement.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/requirements/SizeInSegmentsRequirement.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/requirements/NonTerminalStartingSegmentRequirement.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/hashing/ModelFileReader.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/hashing/Hasher.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/hashing/EdgeMapGenerator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/hashing/AlignmentGenerator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/hashing/BasisMapGenerator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/hashing/AlignmentFileGeneratorMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/sewing/hashing/LigandBindingResPlacer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/switches/GraftSwitchMover.os -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -lprotocols.4 -lprotocols.3 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/libprotocols_b.5.so -stdlib=libstdc++ -shared -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cluster/APCluster.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cluster/cluster.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cluster/calibur/AdjacentList.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cluster/calibur/Clustering.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cluster/calibur/InitCluster.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cluster/calibur/pdb_util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cluster/calibur/PreloadedPDB.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cluster/calibur/SimPDB.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cluster/calibur/jacobi.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cluster/calibur/rmsd.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cluster/calibur/cubic.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/build/Bridge.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/build/BuildInstruction.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/build/BuildManager.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/build/ConnectRight.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/build/GrowLeft.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/build/GrowRight.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/build/RelativeConnectRight.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/build/SegmentInsert.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/build/SegmentRebuild.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/build/SegmentSwap.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/components/BDR.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/components/VarLengthBuild.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/constraints/InverseRotamersRCG.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/constraints/InvrotTreeRCG.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/constraints/NtoCConstraintGenerator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/constraints/RemoveRemodelCsts.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/methods/chainbreak_eval.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/methods/fold_tree_functions.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/methods/fragment_functions.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/methods/pose_mod.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/methods/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/remodel/RemodelAccumulator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/remodel/RemodelConstraintGenerator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/remodel/RemodelData.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/remodel/RemodelDesignMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/remodel/RemodelEnzdesCstModule.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/remodel/RemodelLoopMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/remodel/RemodelMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/remodel/RemodelRotamerLinks.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/remodel/RemodelWorkingSet.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/remodel/RemodelGlobalFrame.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/remodel/RemodelLigandHandler.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/forge/remodel/ResidueVicinityRCG.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/loophash/BackboneDB.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/loophash/FastGapMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/loophash/LocalInserter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/loophash/LoopHashDiversifier.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/loophash/LoopHashLibrary.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/loophash/LoopHashLibraryLoader.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/loophash/LoopHashMap.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/loophash/LoopHashMoverWrapper.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/loophash/LoopHashSampler.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/loophash/LoopHashRelaxProtocol.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/loophash/Mover_LoopHashRefine.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/loophash/MPI_LoopHashRefine.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/loophash/MPI_LoopHashRefine_Emperor.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/loophash/MPI_LoopHashRefine_Master.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/loophash/WorkUnit_LoopHash.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/loop_modeler/LoopModeler.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/loop_modeler/perturbers/LoopHashPerturber.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pockets/Fingerprint.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pockets/FingerprintMultifunc.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pockets/PocketConstraint.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pockets/PocketGrid.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pockets/PocketExemplarMultifunc.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pockets/GenPharmacophore.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pockets/DarcParticleSwarmMinimizer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_reporters/BasicPosePropertyReporters.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_selectors/BasicPoseSelectors.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_selectors/ClusterPoseSelector.os -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -lprotocols.4 -lprotocols.3 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/libprotocols_c.5.so -stdlib=libstdc++ -shared -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/AtomAtomPairFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/AtomAtomPairFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/AtomInResidueAtomInResiduePairFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/AtomInResidueAtomInResiduePairFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/AtomTypesFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/AtomTypesFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/BatchFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/BetaTurnDetection.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/BetaTurnDetectionFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/BetaTurnDetectionFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ChargeChargeFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ChargeChargeFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/DdGFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/DdGFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/DatabaseFilters.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/DatabaseJobInputter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/DatabaseJobOutputter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/DatabaseStatements.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/feature_schemas.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/FeaturesReporter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/FeaturesReporterFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/GeometricSolvationFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/GeometricSolvationFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/HBondFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/HBondFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/HBondParameterFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/HBondParameterFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/HelixCapFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/HelixCapFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/InterfaceDdGMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/InterfaceDdGMoverCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/InterfaceFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/InterfaceFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/JobDataFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/JobDataFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/LoopAnchorFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/LoopAnchorFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ModelFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/OrbitalsFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/OrbitalsFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/PairFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/PairFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/PdbDataFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/PdbDataFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/PoseCommentsFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/PoseCommentsFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/PoseConformationFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/PoseConformationFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ProteinBackboneAtomAtomPairFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ProteinBackboneAtomAtomPairFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ProteinBackboneTorsionAngleFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ProteinBackboneTorsionAngleFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ProteinBondGeometryFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ProteinBondGeometryFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ProteinResidueConformationFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ProteinResidueConformationFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ProteinRMSDFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ProteinRMSDFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ProteinRMSDNoSuperpositionFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ProteinRMSDNoSuperpositionFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ProteinSilentReport.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ProtocolFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/RadiusOfGyrationFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/RadiusOfGyrationFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/Report.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ReportToDB.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ResidueBurialFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ResidueBurialFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ResidueConformationFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ResidueConformationFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ResidueGridScoresFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ResidueFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ResidueFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ResidueScoresFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ResidueScoresFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ResidueSecondaryStructureFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ResidueSecondaryStructureFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ResidueTotalScoresFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ResidueTotalScoresFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ResidueTypesFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ResidueTypesFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/RotamerBoltzmannWeightFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/RotamerBoltzmannWeightFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/RotamerFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/RotamerFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/RotamerRecoveryFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/RotamerRecoveryFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/RuntimeFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/SaltBridgeFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/SaltBridgeFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ScreeningFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ScreeningFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ScoreFunctionFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ScoreFunctionFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ScoreTypeFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/ScoreTypeFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/SecondaryStructureSegmentFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/SecondaryStructureSegmentFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/SimpleMetricFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/SimpleMetricFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/SmotifFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/SmotifFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/StructureFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/StructureFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/StructureScoresFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/StructureScoresFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/TaskOperationFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/TaskOperationFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/TotalScoreFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/TrajectoryMapFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/TrajectoryMapFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/TrajectoryReportToDB.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/UnrecognizedAtomFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/UnrecognizedAtomFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/WaterFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/WaterFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/helixAssembly/ConcurrencyTest.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/helixAssembly/ConcurrencyTestCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/helixAssembly/HelixBundleFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/helixAssembly/HelixBundleFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/helixAssembly/HelicalFragment.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/strand_assembly/CheckForSandwichFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/strand_assembly/SandwichFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/strand_assembly/SandwichFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/strand_assembly/SandwichFragment.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/strand_assembly/StrandBundleFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/strand_assembly/StrandBundleFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/strand_assembly/StrandFragment.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/features/strand_assembly/WriteToFileFromSandwichFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rotamer_recovery/RotamerRecovery.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rotamer_recovery/RotamerRecoveryCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rotamer_recovery/RotamerRecoveryFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rotamer_recovery/RotamerRecoveryMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rotamer_recovery/RRComparer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rotamer_recovery/RRComparerAutomorphicRMSD.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rotamer_recovery/RRComparerElecDensDiff.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rotamer_recovery/RRProtocol.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rotamer_recovery/RRProtocolReferenceStructure.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rotamer_recovery/RRProtocolMinPack.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rotamer_recovery/RRProtocolPackRotamers.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rotamer_recovery/RRProtocolRelax.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rotamer_recovery/RRProtocolMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rotamer_recovery/RRProtocolRotamerTrials.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rotamer_recovery/RRProtocolRTMin.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rotamer_recovery/RRReporter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rotamer_recovery/RRReporterHuman.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rotamer_recovery/RRReporterSQLite.os -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -lprotocols.4 -lprotocols.3 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/libprotocols_h.5.so -stdlib=libstdc++ -shared -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/dna_dock/DNAClashCheckFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/dna_dock/PropagateClashCheckFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/ConformerSwitchMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/DockFilters.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/DockingEnsemble.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/DockingEnsemblePrepackProtocol.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/DockingHighRes.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/DockingHighResFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/DockingHighResLegacy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/DockingInitialPerturbation.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/DockingLowRes.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/DockingLowResEnsemble.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/DockingPrepackProtocol.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/DockingProtocol.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/DockMCMCycle.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/DockMCMProtocol.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/DockMinMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/DockSetupMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/EllipsoidalRandomizationMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/EnsureExclusivelySharedJumpMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/RigidBodyInfo.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/DockTaskFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/metrics.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/SidechainMinMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/TemperedDocking.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/membrane/MPDockingMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/membrane/MPDockingSetupMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/membrane/MPFindInterfaceMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/membrane/QuickRelaxPartnersSeparately.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/docking/stateless/SaneDockingProtocol.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/drug_design/ApplyChemistryMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/drug_design/ConformationSelectionToRDMol.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/drug_design/RDKitMetric.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/drug_design/RDKitMetricsMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/drug_design/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/drug_design/AtomExistsFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/drug_design/ChemicalReaction.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/drug_design/DrugDesignMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/drug_design/DrugPolishMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/drug_design/HeteroHeteroBondFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/drug_design/LigandLocationFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/drug_design/NChiFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/drug_design/RandomFragmentLigand.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/drug_design/RDKitMetricFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/drug_design/ReactionBasedAnalogSampler.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/drug_design/ReactionChemistry.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/drug_design/ReactionFragment.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/drug_design/ReactionGrow.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/drug_design/ReactionMultiTransform.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/drug_design/SAScoreFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/drug_design/SubstituentReplace.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/drug_design/SubstructureReplace.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/drug_design/substitution_support.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/drug_design/bcl/BCLFragmentBaseMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/drug_design/bcl/BCLFragmentMutateMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/drug_design/bcl/BCLReferenceSDFilesManager.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/drug_design/bcl/BCLSampleConfsManager.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/AddHydrogen.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/AddHydrogens.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/AtomCountFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/ChainExistsFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/CompleteConnectionsFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/CompoundTranslate.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/ComputeLigandRDF.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/DistributionMap.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/FinalMinimizer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/grid_functions.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/GrowLigand.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/HBondAcceptorFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/HBondDonorFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/HeavyAtomFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/HighResDocker.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/HighResEnsemble.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/InterfaceBuilder.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/InterfaceScoreCalculator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/ligand_dock_impl.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/ligand_functions.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/ligand_scores.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/LigandArea.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/LigandBaseProtocol.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/LigandDesign.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/LigandDockingLoaders.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/LigandDockProtocol.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/MinimizeBackbone.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/MinimizeLigand.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/MolarMassFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/MolecularMassFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/MoveMapBuilder.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/ProtLigEnsemble.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/RandomConformerMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/RandomConformers.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/ResidueTorsionRestraints.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/RigidSearchMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/Rotate.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/Rotates.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/SlideTogether.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/StartFrom.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/TetherLigand.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/Transform.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/TransformEnsemble.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/Translate.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/UnconstrainedTorsionsMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/WriteLigandMolFile.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/GALigandDock/TorsionSampler.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/GALigandDock/LigandConformer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/GALigandDock/LigandAligner.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/GALigandDock/MCSAligner.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/GALigandDock/GriddedAtomTreeMultifunc.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/GALigandDock/GridScorer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/GALigandDock/GAOptimizer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/GALigandDock/GALigandDock.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/GALigandDock/RotamerData.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/GALigandDock/EntropyEstimator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/GALigandDock/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/ligand_options/Interface.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/ligand_options/interface_distance_functions.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/rdf/StandardRDFFunctions.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ligand_docking/rdf/RDFFunctionFactory.os -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -lprotocols.4 -lprotocols.3 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/libprotocols_g.5.so -stdlib=libstdc++ -shared -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/comparative_modeling/Align_RmsdEvaluator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/comparative_modeling/Align_RotamerEvaluator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/comparative_modeling/AlignmentClustering.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/comparative_modeling/AlignmentSet.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/comparative_modeling/AlignRmsdTargetEvaluatorCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/comparative_modeling/cm_main.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/comparative_modeling/coord_util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/comparative_modeling/ExtraThreadingMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/comparative_modeling/GenericJobInputter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/comparative_modeling/IgnoreSubsetConstraintSet.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/comparative_modeling/LoopRelaxThreadingMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/comparative_modeling/MultiThreadingMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/comparative_modeling/PartialThreadingMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/comparative_modeling/RecoverSideChainsMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/comparative_modeling/StealLigandMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/comparative_modeling/StealSideChainsMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/comparative_modeling/ThreadingJob.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/comparative_modeling/ThreadingJobInputter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/comparative_modeling/ThreadingMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/comparative_modeling/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/comparative_modeling/features/ResidueFeature.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/comparative_modeling/features/ResidueFeatureFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/comparative_modeling/features/SSFeature.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/comparative_modeling/features/TorsionFeature.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/domain_assembly/AddAssemblyConstraints.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/domain_assembly/AssembleLinkerMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/domain_assembly/CombineChainsMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/domain_assembly/PostDockAssemblyScorer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/floppy_tail/FloppyTailMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/floppy_tail/FloppyTail_publication.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/quantum_annealing/ExternalPackerResultLoader.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/quantum_annealing/InteractionGraphSummaryMetric.os -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -lprotocols.4 -lprotocols.3 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/libprotocols_d.5.so -stdlib=libstdc++ -shared -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cartesian/md.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/coupled_moves/CoupledMovesProtocol.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/loops/loop_closure/jacobi/JacobiLoopClosureMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/unfolded_state_energy_calculator/UnfoldedStateEnergyCalculatorJobDistributor.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/unfolded_state_energy_calculator/UnfoldedStateEnergyCalculatorMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/unfolded_state_energy_calculator/UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/unfolded_state_energy_calculator/UnfoldedStateEnergyCalculatorUtil.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/mainchain_potential/GenerateMainchainPotential.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/mainchain_potential/GenerateMainchainPotentialOptions.os -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -lprotocols.4 -lprotocols.3 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/libprotocols_e.6.so -stdlib=libstdc++ -shared -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/medal/MedalExchangeMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/medal/MedalMain.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/medal/MedalMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/medal/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/multistage_rosetta_scripts/MRSJob.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/multistage_rosetta_scripts/MRSJobQueen.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/multistage_rosetta_scripts/MRSJobQueenChecker.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/multistage_rosetta_scripts/MRSJobSummary.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/multistage_rosetta_scripts/TagManager.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/multistage_rosetta_scripts/cluster/ClusterMetric.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/multistage_rosetta_scripts/cluster/ClusterMetricFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/multistage_rosetta_scripts/cluster/KMedoids.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/multistage_rosetta_scripts/cluster/KMedoidsOnTheFly.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/multistage_rosetta_scripts/cluster/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/multistage_rosetta_scripts/cluster/metrics/JumpMetric.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/multistage_rosetta_scripts/cluster/metrics/SequenceMetric.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/nonlocal/BiasedFragmentMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/nonlocal/Chunk.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/nonlocal/HelixRotate.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/nonlocal/PolicyFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/nonlocal/Region.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/nonlocal/SheetTranslate.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/nonlocal/SimpleTreeBuilder.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/nonlocal/SingleFragmentMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/nonlocal/SingleFragmentMoverCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/nonlocal/SmoothPolicy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/nonlocal/StarTreeBuilder.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/nonlocal/TreeBuilderFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/nonlocal/UniformPolicy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/nonlocal/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/star/Extender.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/star/StarAbinitio.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/star/StarAbinitioMain.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/star/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/frag_picker/nonlocal/NonlocalFrags.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/frag_picker/nonlocal/NonlocalFragsMain.os -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -lprotocols_g.5 -lprotocols.4 -lprotocols.3 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/libprotocols_d.6.so -stdlib=libstdc++ -shared -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rna/AlignmentEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rna/denovo/RNA_DeNovoPoseInitializer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rna/denovo/RNA_DeNovoProtocol.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rna/denovo/RNA_FragmentMonteCarlo.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rna/denovo/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rna/denovo/coarse/CoarseRNA_Fragments.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rna/denovo/coarse/CoarseRNA_LoopCloser.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rna/denovo/coarse/MultipleDomainMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rna/denovo/movers/RNA_DeNovoProtocolMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rna/denovo/movers/RNA_DeNovoMasterMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rna/denovo/movers/RNA_FragmentMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rna/denovo/movers/RNA_HelixMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rna/denovo/movers/RNA_Minimizer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rna/denovo/movers/RNA_Relaxer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rna/denovo/movers/RNP_HighResMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rna/denovo/output/RNA_FragmentMonteCarloOutputter.os 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build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/stepwise/modeler/rna/sugar/SugarModeling.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/stepwise/modeler/rna/sugar/SugarInstantiateMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/stepwise/modeler/rna/sugar/SugarVirtualizeMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/stepwise/modeler/rna/sugar/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/stepwise/monte_carlo/StepWiseMonteCarlo.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/stepwise/monte_carlo/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/stepwise/monte_carlo/mover/AddMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/stepwise/monte_carlo/mover/AddOrDeleteMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/stepwise/monte_carlo/mover/DeleteMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/stepwise/monte_carlo/mover/FromScratchMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/stepwise/monte_carlo/mover/ResampleMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/stepwise/monte_carlo/mover/StepWiseMasterMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/stepwise/monte_carlo/mover/StepWiseMove.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/stepwise/monte_carlo/mover/StepWiseMoveSelector.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/stepwise/monte_carlo/mover/TransientCutpointHandler.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/stepwise/monte_carlo/mover/VaryLoopLengthMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/stepwise/monte_carlo/mover/options/StepWiseMoveSelectorOptions.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/stepwise/monte_carlo/options/StepWiseMonteCarloOptions.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/stepwise/monte_carlo/rna/RNA_AddDeleteMonteCarlo.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/stepwise/monte_carlo/rna/RNA_O2PrimeMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/stepwise/monte_carlo/rna/RNA_TorsionMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/stepwise/monte_carlo/submotif/SubMotifLibrary.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/farnesyl/SampleFarnesylMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/farnesyl/InstallFarnesylMover.os -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -lprotocols_b.5 -lprotocols.4 -lprotocols.3 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/libprotocols_a.6.so -stdlib=libstdc++ -shared -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/CrankshaftFlipMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/CreateAngleConstraint.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/CreateDistanceConstraint.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/CreateTorsionConstraint.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/CrosslinkerMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/CycpepRigidBodyPermutationMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/CycpepSymmetryFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/FlipChiralityMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/OversaturatedHbondAcceptorFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/PeptideCyclizeMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/PeptideInternalHbondsFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/PeptideInternalHbondsMetric.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/PeptideStubMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/RamaMutationSelector.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/SymmetricCycpepAlign.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/TryDisulfPermutations.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/crosslinker/1_4_BBMB_Helper.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/crosslinker/CrosslinkerMoverHelper.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/crosslinker/Lanthionine_Helper.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/crosslinker/lanthionine_util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/crosslinker/Metal_HelperBase.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/crosslinker/OctahedralMetal_Helper.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/crosslinker/SquarePlanarMetal_Helper.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/crosslinker/SquarePyramidalMetal_Helper.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/crosslinker/TBMB_Helper.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/crosslinker/TetrahedralMetal_Helper.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/crosslinker/Thioether_Helper.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/crosslinker/thioether_util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/crosslinker/TrigonalPlanarMetal_Helper.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/crosslinker/TrigonalPyramidalMetal_Helper.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/cyclic_peptide/crosslinker/TMA_Helper.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/architects/BetaSheetArchitect.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/architects/BlueprintArchitect.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/architects/CompoundArchitect.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/architects/DeNovoArchitect.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/architects/DeNovoArchitectFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/architects/HelixArchitect.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/architects/MotifArchitect.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/architects/PoseArchitect.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/architects/StrandArchitect.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/architects/StructureArchitect.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/architects/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/calculators/CavityCalculator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/components/DivideAndConqueror.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/components/FoldGraph.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/components/IdealAbegoGenerator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/components/Picker.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/components/ExtendedPoseBuilder.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/components/NullPoseFolder.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/components/PoseFolder.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/components/RandomTorsionPoseFolder.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/components/RemodelLoopMoverPoseFolder.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/components/Segment.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/components/SegmentPairing.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/components/SheetDB.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/components/StructureData.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/components/StructureDataFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/components/StructureDataObserver.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/components/StructureDataPerturber.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/connection/ConnectionArchitect.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/connection/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/constraints/FileConstraintGenerator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/filters/CavityVolumeFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/filters/ExposedHydrophobicsFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/filters/PreProlineFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/filters/SSPredictionFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/filters/SSShapeComplementarityFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/movers/AlignResiduesMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/movers/AddSegmentDataMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/movers/BridgeChainsMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/movers/FoldArchitectMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/movers/DeclareStructureDataCovalentBondMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/movers/DisulfidizeMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/movers/ExtendChainMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/movers/FastDesign.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/movers/FoldTreeFromFoldGraphMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/movers/MakeAsymmetricStructureDataMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/movers/RotateSegmentMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/movers/SealFoldTreeMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/movers/SetResidueAliasMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/residue_selectors/NamedSegmentSelector.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/residue_selectors/PairedSheetResidueSelector.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/denovo_design/task_operations/ConsensusLoopDesignOperation.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/energy_based_clustering/EnergyBasedClusteringOptions.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/energy_based_clustering/EnergyBasedClusteringProtocol.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/BluePrintBDR.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/CircularPermutation.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/NcontactsCalculator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/SheetConstraintGenerator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/SheetRemodelConstraintGenerator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/MatchResidues.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/MatchResiduesMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/filters/CoreDunbrackFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/filters/FragQualFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/filters/HelixBendFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/filters/HelixKinkFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/filters/HelixPairingFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/filters/HSSTripletFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/filters/InterlockingAromaFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/filters/NcontactsFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/filters/ParallelBetaPairingPreferenceFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/filters/SecondaryStructureFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/filters/SecondaryStructureCountFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/filters/SecondaryStructureHasResidueFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/filters/SheetTopologyFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/filters/StrandCurvatureByLevels.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/filters/StrandHelixGeometryFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/potentials/AACompositionEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/potentials/SetAACompositionPotential.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/potentials/SetSecStructEnergies.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/potentials/sspot/HSPairPotential.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/potentials/sspot/NatbiasHelicesSheetPotential.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/potentials/sspot/NatbiasHelixPairPotential.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/potentials/sspot/NatbiasSecondaryStructureEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/potentials/sspot/NatbiasStrandPairPotential.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/potentials/sspot/SSPairPotential.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/potentials/sspot/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/topology/BB_Pos.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/topology/BetaAlphaBetaMotif.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/topology/DimerPairing.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/topology/HelixPairing.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/topology/HSSTriplet.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/topology/Sheet.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/topology/SheetFoldTypeManager.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/topology/SS_Info2.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/topology/StrandPairing.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fldsgn/topology/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/flxbb/DesignTask.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/flxbb/FilterStructs.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/flxbb/FlxbbDesign.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/flxbb/FlxbbDesign_main.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/flxbb/InterlockAroma.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/flxbb/LayerDesignOperation.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/flxbb/utility.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/generalized_kinematic_closure/GeneralizedKIC.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/generalized_kinematic_closure/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/generalized_kinematic_closure/filter/GeneralizedKICfilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/generalized_kinematic_closure/perturber/GeneralizedKICperturber.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/generalized_kinematic_closure/selector/GeneralizedKICselector.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/helical_bundle/BackboneGridSampler.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/helical_bundle/BackboneGridSamplerHelper.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/helical_bundle/BundleGridSampler.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/helical_bundle/BundleGridSamplerHelper.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/helical_bundle/BundleParametrizationCalculator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/helical_bundle/BundleReporterFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/helical_bundle/FitSimpleHelix.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/helical_bundle/FitSimpleHelixMultiFunc.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/helical_bundle/MakeBundle.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/helical_bundle/MakeBundleHelix.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/helical_bundle/PerturbBundle.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/helical_bundle/PerturbBundleHelix.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/helical_bundle/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/helical_bundle/parameters/BundleParameters.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/helical_bundle/parameters/BundleParametersSet.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/helical_bundle/parameters/OmegaBundleParameter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/optimize_weights/DDGBindOptEData.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/optimize_weights/DGBindOptEData.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/optimize_weights/IterativeOptEDriver.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/optimize_weights/NestedEnergyTermOptEData.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/optimize_weights/OptEData.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/optimize_weights/OptEMultifunc.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/optimize_weights/PNatLigPoseOptEData.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_length_moves/AnalyzeLoopModeling.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_length_moves/ConnectChainsMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_length_moves/FixAllLoopsMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_length_moves/InsertResMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/pose_length_moves/NearNativeLoopCloser.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/conformation/Assembly.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/conformation/AssemblyFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/conformation/ContinuousAssembly.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/conformation/DisembodiedAssembly.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/conformation/Model.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/hashing/Hasher.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/scoring/LegacyBlosumScorer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/scoring/LegacyClashScorer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/scoring/LegacyInterModelMotifScorer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/scoring/LegacyMotifScorer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/scoring/LegacyPartnerMotifScorer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/scoring/LegacyCalciumMotifScorer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/sampling/LegacyAddStartnodeFragments.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/sampling/LegacyAppendAssemblyMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/sampling/LegacyAssemblyMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/sampling/LegacyAssemblyConstraintsMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/sampling/LegacyGivenPathAssemblyMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/sampling/LegacyGreedyAssemblyMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/sampling/LegacyMonteCarloAssemblyMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/sampling/SewGraph.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/sampling/LegacyRepeatAssemblyMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/sampling/LegacyEnumerateAssemblyMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/sampling/requirements/LegacyGlobalLengthRequirement.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/sampling/requirements/LegacyRequirementSet.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/sampling/requirements/LegacyRequirementFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/sampling/requirements/LegacyResidueRetentionRequirement.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/sampling/requirements/LegacySegmentDsspRequirement.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/sampling/requirements/LegacySegmentLengthRequirement.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/util/io.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/legacy_sewing/util/util.os -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/libprotocols_c.6.so -stdlib=libstdc++ -shared -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/flexpep_docking/FlexPepDockingAbInitio.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/flexpep_docking/FlexPepDockingFlags.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/flexpep_docking/FlexPepDockingLowRes.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/flexpep_docking/FlexPepDockingPoseMetrics.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/flexpep_docking/FlexPepDockingProtocol.os -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -lprotocols_h.5 -lprotocols_g.5 -lprotocols.4 -lprotocols.3 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/libprotocols_b.6.so -stdlib=libstdc++ -shared -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/AbrelaxApplication.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/AbrelaxMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/BrokerMain.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/ClassicAbinitio.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/ConstraintFragmentSampler.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/DomainAssembly.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/DoubleLayerKinematicAbinitio.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/FoldConstraints.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/FragmentSampler.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/HedgeArchive.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/IterativeAbrelax.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/IterativeBase.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/IterativeCentroid.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/IterativeFullatom.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/KinematicAbinitio.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/KinematicControl.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/KinematicTaskControl.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/LoopJumpFoldCst.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/MembraneAbinitio.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/PairingStatistics.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/Protocol.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/ResolutionSwitcher.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/StrandConstraints.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/Template.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/TemplateJumpSetup.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/Templates.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/vs_test.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/abscript/AbscriptLoopCloserCM.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/abscript/AbscriptMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/abscript/AbscriptStageMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/abscript/ConstraintPreparer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/abscript/FragmentCM.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/abscript/FragmentJumpCM.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/abscript/JumpSampleData.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/abscript/RigidChunkCM.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/abscript/StagePreparer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/abinitio/abscript/StructPerturberCM.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ddg/ddG_main.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ddg/ddGData.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ddg/ddGMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/ddg/CartesianddG.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/hybridization/BackboneTorsionSampler.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/hybridization/BackboneTorsionPerturbation.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/hybridization/CartesianHybridize.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/hybridization/CartesianSampler.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/hybridization/ChunkTrialMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/hybridization/DDomainParse.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/hybridization/DomainAssembly.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/hybridization/FoldTreeHybridize.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/hybridization/FragmentBiasAssigner.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/hybridization/HybridizeFoldtreeDynamic.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/hybridization/HybridizeProtocol.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/hybridization/InsertChunkMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/hybridization/MRMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/hybridization/TemplateHistory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/hybridization/TMalign.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/hybridization/WeightedFragmentTrialMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/hybridization/WeightedFragmentSmoothTrialMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/hybridization/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/jumping/DisulfPairingLibrary.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/jumping/DisulfPairingsList.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/jumping/JumpSample.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/jumping/JumpSetup.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/jumping/MembraneJump.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/jumping/PairingLibrary.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/jumping/RandomSheetBuilder.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/jumping/ResiduePairJump.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/jumping/ResiduePairJumpSetup.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/jumping/SameStrand.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/jumping/SheetBuilder.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/jumping/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/loop_build/LoopBuild.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/loop_build/LoopMover_SlidingWindow.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/loop_build/LoopMover_SlidingWindowCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/loop_build/LoopBuildMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/loop_build/LoopmodelWrapper.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/loop_grower/LoopGrower.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/loop_grower/FragmentExtension.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/loop_grower/SheetSampler.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/loop_grower/DensSkeleton.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/loop_grower/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/motifs/BuildPosition.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/motifs/IRCollection.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/motifs/LigandDiscoverySearch.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/motifs/LigandMotifSearch.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/motifs/Motif.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/motifs/motif_utils.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/motifs/MotifDnaPacker.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/motifs/MotifHit.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/motifs/MotifLibrary.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/motifs/MotifSearch.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/motifs/SingleMotif.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/motifs/IdentifyLigandMotifs.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/noesy_assign/CovalentCompliance.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/noesy_assign/CrossPeak.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/noesy_assign/CrossPeakInfo.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/noesy_assign/CrossPeakList.os 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build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/noesy_assign/PeakFileFormat.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/noesy_assign/PeakFileFormat_Sparky.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/noesy_assign/PeakFileFormat_xpk.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/noesy_assign/ProtonResonance.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/noesy_assign/Resonance.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/noesy_assign/ResonanceList.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/noesy_assign/StructureDependentPeakCalibrator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/noesy_assign/StructureIndependentPeakCalibrator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/noesy_assign/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/protein_grid/ProteinGrid.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rbsegment_relax/AutoRBRelaxMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rbsegment_relax/ConfChangeMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rbsegment_relax/MakeStarTopology.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rbsegment_relax/FragInsertAndAlignMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rbsegment_relax/OptimizeThreading.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rbsegment_relax/IdealizeHelices.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rbsegment_relax/RBSegment.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rbsegment_relax/RBSegmentMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rbsegment_relax/RBSegmentRelax.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rbsegment_relax/RBSegmentRelax_main.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/rbsegment_relax/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/surface_docking/CentroidRelaxMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/surface_docking/FullatomRelaxMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/surface_docking/SurfaceDockingProtocol.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/surface_docking/SurfaceOrientMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/surface_docking/SurfaceParameters.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/surface_docking/SurfaceVectorLoader.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/symmetric_docking/SymDockBaseProtocol.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/symmetric_docking/SymDockingHiRes.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/symmetric_docking/SymDockingLowRes.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/symmetric_docking/SymDockProtocol.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/symmetric_docking/SymFoldandDockMoveRbJumpMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/symmetric_docking/SymFoldandDockRbTrialMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/symmetric_docking/SymFoldandDockSlideTrialMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/symmetric_docking/SymRestrictTaskForDocking.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/symmetric_docking/SymSidechainMinMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/symmetric_docking/membrane/MPSymDockMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/AsymFoldandDockClaimer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/BasicJumpClaimer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/ClaimerMessage.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/ConstraintClaimer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/ConstraintEvaluatorWrapper.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/ConstraintEvaluatorWrapperCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/CoordConstraintClaimer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/CutBiasClaimer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/DensityScoringClaimer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/DisulfJumpClaimer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/FibrilModelingClaimer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/FoldandDockClaimer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/FragmentClaimer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/FragmentJumpClaimer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/LoopFragmentClaimer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/MembraneTopologyClaimer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/TMHTopologySamplerClaimer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/RigidBodyRandomTMHMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/MetalloClaimer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/PcsEnergyController.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/PseudocontactShiftEnergyController.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/RigidChunkClaimer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/SequenceClaimer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/SequenceNumberResolver.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/StartStructClaimer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/SymmetryClaimer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/TemplateFragmentClaimer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/TemplateJumpClaimer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/TopologyBroker.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/TopologyClaimer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/TopologyClaimerFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/topology_broker/claims/DofClaim.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/trRosetta_protocols/constraint_generators/trRosettaConstraintGenerator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/trRosetta_protocols/movers/trRosettaProtocolMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/protein_mpnn/ProteinMPNN.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/protein_mpnn/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/protein_mpnn/ProteinMPNNMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/protein_mpnn/ProteinMPNNProbabilitiesMetric.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fold_from_loops/filters/RmsdFromResidueSelectorFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fold_from_loops/filters/ScorePoseSegmentFromResidueSelectorFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fold_from_loops/filters/ConstraintFulfilmentFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fold_from_loops/selectors/ProteinResidueSelector.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fold_from_loops/selectors/CutpointResidueSelector.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fold_from_loops/selectors/ConstraintResidueSelector.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fold_from_loops/constraint_generator/SegmentedAtomPairConstraintGenerator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fold_from_loops/constraint_generator/AutomaticSheetConstraintGenerator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fold_from_loops/movers/AlignByResidueSelectorMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fold_from_loops/movers/DisplayPoseLabelsMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fold_from_loops/movers/LabelPoseFromResidueSelectorMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fold_from_loops/movers/ReleaseConstraintFromResidueMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fold_from_loops/movers/SplitAndMixPoseMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fold_from_loops/movers/ResidueLabelsToPymolSelectionMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fold_from_loops/movers/SavePDBInfoMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fold_from_loops/movers/MoveMapFactoryToNamedMoveMapMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fold_from_loops/movers/NubInitioLoopClosureMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fold_from_loops/utils/utils.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fold_from_loops/utils/Nub.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/fold_from_loops/NubInitioMover.os -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -lprotocols_a.5 -lprotocols_b.5 -lprotocols_h.5 -lprotocols_g.5 -lprotocols.4 -lprotocols.3 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/libprotocols.7.so -stdlib=libstdc++ -shared -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/antibody_legacy/AntibodyClass.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/antibody_legacy/AntibodyModeler.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/antibody_legacy/CDRH3Modeler.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/antibody_legacy/LHRepulsiveRampLegacy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/antibody_legacy/LHSnugFitLegacy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/antibody_legacy/GraftMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/antibody_legacy/Ubiquitin_E2C_Modeler.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/antibody/Ab_TemplateInfo.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/antibody/AntibodyCDRGrafter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/antibody/AntibodyEnumManager.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/antibody/AntibodyInfo.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/antibody/AntibodyFeatures.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/antibody/AntibodyFeaturesCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/antibody/AntibodyModelerProtocol.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/antibody/AntibodyNumberingParser.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/antibody/AntibodyNumberingConverterMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/antibody/CDRsMinPackMin.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/antibody/GraftCDRLoopsProtocol.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/antibody/GraftOneCDRLoop.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/antibody/GraftedStemOptimizer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/antibody/CloseOneCDRLoop.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/antibody/H3CterInsert.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/antibody/H3PerturbCCD.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/antibody/H3RefineCCD.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/antibody/LHRepulsiveRamp.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/antibody/RefineBetaBarrel.os 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build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/tcr/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/tcr/template_util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/tcr/grafting_util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/tcr/modeling_util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/testing/BenchmarkBuildRotamersMover.os -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_a.2 -lprotocols_b.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/libprotocols.8.so -stdlib=libstdc++ -shared -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/init/init.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/init/register1.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/init/register2.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/init/register3.os build/src/release/linux/5.4/64/x86/clang/10.0/default/protocols/init/register4.os -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/libdevel.so -stdlib=libstdc++ -shared -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/init.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/cartesian_frags/CartesianFragment.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/cartesian_frags/DNA_FragLib.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/cartesian_frags/dna_util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/cartesian_frags/SafeID.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/coupled_sidechains/CoupledSidechainProtocol2.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/cstEnergyBalance/minimalCstRelaxUtil.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/denovo_design/ConnectJumps.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/denovo_design/DumpStatsSS.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/denovo_design/ParametricSheet.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/denovo_design/RestrictRegion.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/denovo_design/calculators/ResidueCentralityCalculator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/denovo_design/filters/CoreResiduesPerElementFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/denovo_design/filters/FoldabilityFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/denovo_design/scoring/SideChainNeighborsEnergy.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/denovo_design/task_operations/DesignBySecondaryStructure.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/denovo_design/task_operations/HighestEnergyRegion.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/denovo_protein_design/CreateStartingStructureMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/denovo_protein_design/DesignRelaxMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/denovo_protein_design/SequenceFitnessMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/denovo_protein_design/SSClass.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/denovo_protein_design/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/dna/base_movers.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/dna/ProteinDNA_Relax.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/dna/protocols.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/dna/relax_util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/dna/MotifLoopBuild.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/dna/util_motif_loop.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/dna/util.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/domain_assembly/domain_assembly.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/domain_assembly/domain_assembly_setup.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/domain_assembly/DomainAssemblyMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/domain_assembly/DomainAssemblyReader.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/domain_assembly/RedesignDomainAssemblyMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/domain_assembly/DomainAssemblyJobInputter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/domain_insertion/FusePosesNtoCMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/domain_insertion/InsertionSiteTestMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/enzdes/DesignSilentStruct.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/enzdes/EnzdesRemodelProtocol.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/fold_from_loops/FoldFromLoops_functions.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/fold_from_loops/FoldFromLoopsMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/inv_kin_lig_loop_design/Cloner.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/inv_kin_lig_loop_design/Fragment.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/inv_kin_lig_loop_design/Ints.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/inv_kin_lig_loop_design/JumpManager.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/inv_kin_lig_loop_design/Loop.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/inv_kin_lig_loop_design/Mover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/inv_kin_lig_loop_design/Protocol.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/inv_kin_lig_loop_design/ResID.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/loop_creation/AddLoopResidues.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/loop_creation/CartminLoopCloser.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/loop_creation/CCDLoopCloser.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/loop_creation/FragmentLoopInserter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/loop_creation/IterativeLoophashLoopInserter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/loop_creation/LoopCreationMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/loop_creation/LoopCloser.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/loop_creation/LoophashLoopInserter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/loop_creation/LoopInserter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/loop_extend/LoopExtendMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/loop_grids/LoopGrid.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/loophash_loopclosure/LoopHashLoopClosureMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/matdes/Symmetrizer.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/matdes/SymmetrizerSampler.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/matdes/GenericSymmetricSampler.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/matdes/StoreQuasiSymmetricTaskMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/mmt_msd/MMTDriver.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/mmt_msd/MMTOffRotamerPackingJob.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/mmt_msd/MMTPackingJob.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/mmt_msd/MMTMinPackingJob.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/mmt_msd/MMTReceiver.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/optest/A.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/optest/B1.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/optest/B2.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/optest/C1.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/optest/C2.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/replica_docking/AddEncounterConstraintMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/replica_docking/FnatFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/replica_docking/IrmsdFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/replica_docking/CaIrmsdFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/replica_docking/InteractionScoreFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/replica_docking/LrmsdFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/replica_docking/FnonnatFilter.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/replica_docking/WrapFilterAsEvaluator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/replica_docking/WrapFilterAsEvaluatorCreator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/replica_docking/ModulatedMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/replica_docking/TempInterpolator.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/replica_docking/TempInterpolatorFactory.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/replica_docking/TempWeightedMetropolisHastingsMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/replica_docking/UnbiasedRigidBodyMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/residual_dipolar_coupling/RDC_energies.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/residual_dipolar_coupling/RDC_main.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/scientific_tests/PDBDiagnosticMover.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/znhash/ZnHash.os build/src/release/linux/5.4/64/x86/clang/10.0/default/devel/znhash/SymmZnMoversAndTaskOps.os -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/mp_mutate_relax.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/membrane/mp_mutate_relax.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/basic_glycan_sampler.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/carbohydrates/basic_glycan_sampler.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/multistage_rosetta_scripts.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rosetta_scripts/multistage/multistage_rosetta_scripts.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/score_aln2.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/comparative_modeling/score_aln2.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/sim_cryo.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/electron_density/sim_cryo.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/make_mainchain_potential.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/vmullig/make_mainchain_potential.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/test_non-canonical_connectivities.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/tests/test_non-canonical_connectivities.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/screen_phosphates.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/rhiju/screen_phosphates.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/angle_recovery_stats.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/james/angle_recovery_stats.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/features_database_schema.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/momeara/features_database_schema.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/antibody_legacy.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/antibody/antibody_legacy.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/erraser_minimizer.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rna/erraser/erraser_minimizer.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/mucintypeglycosylation.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/ysrinivasan/mucintypeglycosylation.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/helical_bundle_predict.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/helical_bundle/helical_bundle_predict.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/test_rosetta_thread_manager_preallocation.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/jackmaguire/test_rosetta_thread_manager_preallocation.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/homodimer_design.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/scenarios/beta_strand_homodimer_design/homodimer_design.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/erraser_minimizer.default.linuxclangrelease" as "bin/erraser_minimizer.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/helical_bundle_predict.default.linuxclangrelease" as "bin/helical_bundle_predict.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/mucintypeglycosylation.default.linuxclangrelease" as "bin/mucintypeglycosylation.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/antibody_legacy.default.linuxclangrelease" as "bin/antibody_legacy.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/features_database_schema.default.linuxclangrelease" as "bin/features_database_schema.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/screen_phosphates.default.linuxclangrelease" as "bin/screen_phosphates.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/test_non-canonical_connectivities.default.linuxclangrelease" as "bin/test_non-canonical_connectivities.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/sim_cryo.default.linuxclangrelease" as "bin/sim_cryo.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/score_aln2.default.linuxclangrelease" as "bin/score_aln2.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/angle_recovery_stats.default.linuxclangrelease" as "bin/angle_recovery_stats.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/make_mainchain_potential.default.linuxclangrelease" as "bin/make_mainchain_potential.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/basic_glycan_sampler.default.linuxclangrelease" as "bin/basic_glycan_sampler.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/mp_mutate_relax.default.linuxclangrelease" as "bin/mp_mutate_relax.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/multistage_rosetta_scripts.default.linuxclangrelease" as "bin/multistage_rosetta_scripts.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/pocket_relax.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/pocket/pocket_relax.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/ddg_monomer.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/ddg/ddg_monomer.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/per_residue_energies.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/analysis/per_residue_energies.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/PDB_diagnostic.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/smlewis/ChemXRW/PDB_diagnostic.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/r_noe_assign.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/nmr/r_noe_assign.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/antibody.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/antibody/antibody.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/validate_silent.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/comparative_modeling/validate_silent.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/find_buns.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/andrew/find_buns.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/torsional_potential_corrections.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/weight_optimization/torsional_potential_corrections.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/hshash_utils.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/jcorn/hshash_utils.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/BuildPeptide.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/flexpep_docking/BuildPeptide.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/thermal_sampler.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/recces/legacy/thermal_sampler.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/extract_pdbs.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/extract_pdbs.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_predict_chem_map.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rna/util/rna_predict_chem_map.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/test_rosetta_thread_manager_preallocation.default.linuxclangrelease" as "bin/test_rosetta_thread_manager_preallocation.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/pepspec.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/pepspec/pepspec.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/homodimer_design.default.linuxclangrelease" as "bin/homodimer_design.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/batch_distances.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/analysis/batch_distances.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/pocket_relax.default.linuxclangrelease" as "bin/pocket_relax.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/AbinitioRelax.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/AbinitioRelax.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/ddg_monomer.default.linuxclangrelease" as "bin/ddg_monomer.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/MakeRotLib.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/ncaa_utilities/MakeRotLib.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/per_residue_energies.default.linuxclangrelease" as "bin/per_residue_energies.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/test_multithreaded_ig_correctness.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/vmullig/test_multithreaded_ig_correctness.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/PDB_diagnostic.default.linuxclangrelease" as "bin/PDB_diagnostic.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/tcrmodel.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/tcr/tcrmodel.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/r_noe_assign.default.linuxclangrelease" as "bin/r_noe_assign.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/constel.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/constel.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/antibody.default.linuxclangrelease" as "bin/antibody.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/cs_rosetta_rna.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rna/util/cs_rosetta_rna.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/find_buns.default.linuxclangrelease" as "bin/find_buns.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/validate_silent.default.linuxclangrelease" as "bin/validate_silent.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/jrelax.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/james/jrelax.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/validate_database.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/internal/validate_database.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/torsional_potential_corrections.default.linuxclangrelease" as "bin/torsional_potential_corrections.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/hshash_utils.default.linuxclangrelease" as "bin/hshash_utils.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/recces.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/recces/recces.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/BuildPeptide.default.linuxclangrelease" as "bin/BuildPeptide.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/antibody_H3.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/antibody/antibody_H3.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/thermal_sampler.default.linuxclangrelease" as "bin/thermal_sampler.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/test_CarbohydrateInfo.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/tests/test_CarbohydrateInfo.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/dock_glycans.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/carbohydrates/dock_glycans.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_predict_chem_map.default.linuxclangrelease" as "bin/rna_predict_chem_map.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/extract_pdbs.default.linuxclangrelease" as "bin/extract_pdbs.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/pH_protocol.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/pH_protocol.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/oop_design.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/noncanonical_backbones/oop_design.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/pepspec.default.linuxclangrelease" as "bin/pepspec.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/fixbb.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/design/fixbb.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/batch_distances.default.linuxclangrelease" as "bin/batch_distances.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/mp_transform.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/membrane/mp_transform.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/AbinitioRelax.default.linuxclangrelease" as "bin/AbinitioRelax.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/extract_motifs.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/motif_tools/extract_motifs.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/MakeRotLib.default.linuxclangrelease" as "bin/MakeRotLib.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/recon.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/recon_design/recon.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/test_multithreaded_ig_correctness.default.linuxclangrelease" as "bin/test_multithreaded_ig_correctness.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/test_trRosettaProtocolMover.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/vmullig/test_trRosettaProtocolMover.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/tcrmodel.default.linuxclangrelease" as "bin/tcrmodel.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/swa_protein_main.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/stepwise/legacy/swa_protein_main.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/constel.default.linuxclangrelease" as "bin/constel.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/ca_to_allatom.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/scenarios/ca_to_allatom.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/cs_rosetta_rna.default.linuxclangrelease" as "bin/cs_rosetta_rna.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/pocket_measure.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/pocket/pocket_measure.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/validate_database.default.linuxclangrelease" as "bin/validate_database.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/jrelax.default.linuxclangrelease" as "bin/jrelax.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/minirosetta.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/boinc/minirosetta.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/minimize_ppi.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/minimize_ppi.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/recces.default.linuxclangrelease" as "bin/recces.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/antibody_H3.default.linuxclangrelease" as "bin/antibody_H3.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/ensemble_generator_score12_sidechain_ver2.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/ddg/ensemble_generator_score12_sidechain_ver2.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/AnchoredPDBCreator.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/interface_design/anchored_design/AnchoredPDBCreator.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/test_CarbohydrateInfo.default.linuxclangrelease" as "bin/test_CarbohydrateInfo.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/dock_glycans.default.linuxclangrelease" as "bin/dock_glycans.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/ResidueDisorder.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/analysis/ResidueDisorder.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/pH_protocol.default.linuxclangrelease" as "bin/pH_protocol.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/calc_nmr_tensor.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/nmr/calc_nmr_tensor.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/rosetta_scripts_jd3.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rosetta_scripts/rosetta_scripts_jd3.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/oop_design.default.linuxclangrelease" as "bin/oop_design.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/vancomycin.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/awatkins/vancomycin.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/fixbb.default.linuxclangrelease" as "bin/fixbb.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/idealize_jd2.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/idealize_jd2.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/mp_transform.default.linuxclangrelease" as "bin/mp_transform.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_minimize.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rna/util/rna_minimize.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/extract_motifs.default.linuxclangrelease" as "bin/extract_motifs.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/contactMap.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/analysis/contactMap.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/recon.default.linuxclangrelease" as "bin/recon.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/helix_from_sequence.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/membrane/helix_from_sequence.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/test_trRosettaProtocolMover.default.linuxclangrelease" as "bin/test_trRosettaProtocolMover.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/calculate_sasa.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/calculate_sasa.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/swa_protein_main.default.linuxclangrelease" as "bin/swa_protein_main.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/rotamer_recovery.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/benchmark/scientific/rotamer_recovery.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/ca_to_allatom.default.linuxclangrelease" as "bin/ca_to_allatom.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/test_rosetta_thread_manager_basic_API.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/vmullig/test_rosetta_thread_manager_basic_API.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/pocket_measure.default.linuxclangrelease" as "bin/pocket_measure.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/UBQ_Gp_CYD-CYD.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/scenarios/chemically_conjugated_docking/UBQ_Gp_CYD-CYD.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/minirosetta.default.linuxclangrelease" as "bin/minirosetta.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/test_carbohydrate_docking.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/tests/test_carbohydrate_docking.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/minimize_ppi.default.linuxclangrelease" as "bin/minimize_ppi.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/ensemble_generator_score12_sidechain_ver2.default.linuxclangrelease" as "bin/ensemble_generator_score12_sidechain_ver2.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/antibody_CR_paratope.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/antibody/antibody_CR_paratope.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/hotspot_stub_constraint_test.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/sarel/hotspot_stub_constraint_test.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/AnchoredPDBCreator.default.linuxclangrelease" as "bin/AnchoredPDBCreator.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/glycan_info.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/carbohydrates/glycan_info.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/rosetta_scripts_jd3.default.linuxclangrelease" as "bin/rosetta_scripts_jd3.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/calc_nmr_tensor.default.linuxclangrelease" as "bin/calc_nmr_tensor.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/pmut_scan_parallel.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/design/pmut_scan_parallel.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/ResidueDisorder.default.linuxclangrelease" as "bin/ResidueDisorder.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/DNA_methylation.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/post-translational_modification/DNA_methylation.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_helix.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rna/util/rna_helix.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/vancomycin.default.linuxclangrelease" as "bin/vancomycin.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/swa_rna_util.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/stepwise/legacy/swa_rna_util.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/idealize_jd2.default.linuxclangrelease" as "bin/idealize_jd2.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/oop_dock_design.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/kdrew/oop_dock_design.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/contactMap.default.linuxclangrelease" as "bin/contactMap.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/ddg_benchmark.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/benchmark/scientific/ddg_benchmark.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_minimize.default.linuxclangrelease" as "bin/rna_minimize.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/FloppyTail.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/scenarios/FloppyTail.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/helix_from_sequence.default.linuxclangrelease" as "bin/helix_from_sequence.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/cluster_alns.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/comparative_modeling/cluster_alns.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/test_rosetta_thread_manager_basic_API.default.linuxclangrelease" as "bin/test_rosetta_thread_manager_basic_API.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/rotamer_recovery.default.linuxclangrelease" as "bin/rotamer_recovery.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/calculate_sasa.default.linuxclangrelease" as "bin/calculate_sasa.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/rnp_ddg.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rnp_ddg/rnp_ddg.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/UBQ_Gp_CYD-CYD.default.linuxclangrelease" as "bin/UBQ_Gp_CYD-CYD.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/test_carbohydrate_docking.default.linuxclangrelease" as "bin/test_carbohydrate_docking.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/report_hbonds_for_plugin.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/analysis/report_hbonds_for_plugin.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/packstat.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/packstat.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/hotspot_stub_constraint_test.default.linuxclangrelease" as "bin/hotspot_stub_constraint_test.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/antibody_CR_paratope.default.linuxclangrelease" as "bin/antibody_CR_paratope.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/glycan_info.default.linuxclangrelease" as "bin/glycan_info.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/crossaln.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/mike/crossaln.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/cartesian_ddg.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/ddg/cartesian_ddg.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/pmut_scan_parallel.default.linuxclangrelease" as "bin/pmut_scan_parallel.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_helix.default.linuxclangrelease" as "bin/rna_helix.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/DNA_methylation.default.linuxclangrelease" as "bin/DNA_methylation.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/gen_apo_grids.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/match/gen_apo_grids.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/test1.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/phil/test1.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_cluster.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rna/util/rna_cluster.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/swa_rna_util.default.linuxclangrelease" as "bin/swa_rna_util.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/oop_dock_design.default.linuxclangrelease" as "bin/oop_dock_design.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/cluster.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/clustering/cluster.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_score.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rna/util/rna_score.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/params_tester.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/delucasl/params_tester.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/ddg_benchmark.default.linuxclangrelease" as "bin/ddg_benchmark.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/ensemble_analysis.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/analysis/ensemble_analysis.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/mp_dock_setup.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/membrane/mp_dock_setup.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/identify_ligand_motifs.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/motif_ligand_discovery/identify_ligand_motifs.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/FloppyTail.default.linuxclangrelease" as "bin/FloppyTail.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/transform_loodo.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/loop_modeling/transform_loodo.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/cluster_alns.default.linuxclangrelease" as "bin/cluster_alns.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/membrane_abinitio2.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/membrane_abinitio/membrane_abinitio2.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/rnp_ddg.default.linuxclangrelease" as "bin/rnp_ddg.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/test_trRosetta.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/vmullig/test_trRosetta.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/packstat.default.linuxclangrelease" as "bin/packstat.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/glycomutagenesis.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/labonte/glycomutagenesis.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/report_hbonds_for_plugin.default.linuxclangrelease" as "bin/report_hbonds_for_plugin.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/test_coenzymes.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/tests/test_coenzymes.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/cartesian_ddg.default.linuxclangrelease" as "bin/cartesian_ddg.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_extract.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rna/util/rna_extract.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/crossaln.default.linuxclangrelease" as "bin/crossaln.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/packing_angle.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/antibody/packing_angle.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/gen_apo_grids.default.linuxclangrelease" as "bin/gen_apo_grids.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/measure_lcaa_neighbor_radii.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/andrew/measure_lcaa_neighbor_radii.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_cluster.default.linuxclangrelease" as "bin/rna_cluster.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/pose_from_saccharide_sequence.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/carbohydrates/pose_from_saccharide_sequence.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/cluster.default.linuxclangrelease" as "bin/cluster.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/parse_rosetta_script.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rosetta_scripts/parse_rosetta_script.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/test1.default.linuxclangrelease" as "bin/test1.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/ig_dump.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/colin/ig_dump.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_score.default.linuxclangrelease" as "bin/rna_score.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/SID_ERMS_prediction.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/analysis/SID_ERMS_prediction.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/params_tester.default.linuxclangrelease" as "bin/params_tester.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/beta_peptide_modeling.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/design/beta_peptide_modeling.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/mp_dock_setup.default.linuxclangrelease" as "bin/mp_dock_setup.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/phosphorylation.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/post-translational_modification/phosphorylation.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/ensemble_analysis.default.linuxclangrelease" as "bin/ensemble_analysis.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/rosetta_scripts.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rosetta_scripts/rosetta_scripts.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/identify_ligand_motifs.default.linuxclangrelease" as "bin/identify_ligand_motifs.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/enumerate_rotamers.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/ralford/enumerate_rotamers.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/transform_loodo.default.linuxclangrelease" as "bin/transform_loodo.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/select_best_unique_ligand_poses.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/ligand_docking/select_best_unique_ligand_poses.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/membrane_abinitio2.default.linuxclangrelease" as "bin/membrane_abinitio2.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/revold.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/ligand_design/revold.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/glycomutagenesis.default.linuxclangrelease" as "bin/glycomutagenesis.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/test_trRosetta.default.linuxclangrelease" as "bin/test_trRosetta.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/fit_helix_in_map.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/DRRAFTER/fit_helix_in_map.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/mp_span_from_pdb.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/membrane/mp_span_from_pdb.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/test_coenzymes.default.linuxclangrelease" as "bin/test_coenzymes.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/zinc2_homodimer_design.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/design/zinc2_homodimer_design.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/packing_angle.default.linuxclangrelease" as "bin/packing_angle.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_extract.default.linuxclangrelease" as "bin/rna_extract.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/test_SiteConstraint.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/tests/test_SiteConstraint.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/ld_converter.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/kdrew/ld_converter.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/measure_lcaa_neighbor_radii.default.linuxclangrelease" as "bin/measure_lcaa_neighbor_radii.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/tensorflow_manager_multi_input_test.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/jackmaguire/tensorflow_manager_multi_input_test.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/pose_from_saccharide_sequence.default.linuxclangrelease" as "bin/pose_from_saccharide_sequence.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/parse_rosetta_script.default.linuxclangrelease" as "bin/parse_rosetta_script.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/simple_dna_regression_test.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/chen/simple_dna_regression_test.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/fix_alignment_to_match_pdb.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/comparative_modeling/fix_alignment_to_match_pdb.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/ig_dump.default.linuxclangrelease" as "bin/ig_dump.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/r_pdb2top.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/olli/r_pdb2top.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/SID_ERMS_prediction.default.linuxclangrelease" as "bin/SID_ERMS_prediction.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/remodel.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/remodel.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/beta_peptide_modeling.default.linuxclangrelease" as "bin/beta_peptide_modeling.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/phosphorylation.default.linuxclangrelease" as "bin/phosphorylation.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/mpdocking_setup.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/jkleman/mpdocking_setup.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/loophash.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/mike/loophash.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/rosetta_scripts.default.linuxclangrelease" as "bin/rosetta_scripts.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/build_full_model.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/stepwise/build_full_model.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/enumerate_rotamers.default.linuxclangrelease" as "bin/enumerate_rotamers.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/rosettaDNA.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rosettaDNA/rosettaDNA.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/revold.default.linuxclangrelease" as "bin/revold.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/mr_protocols.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/electron_density/mr_protocols.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/select_best_unique_ligand_poses.default.linuxclangrelease" as "bin/select_best_unique_ligand_poses.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/match.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/match/match.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/mp_span_from_pdb.default.linuxclangrelease" as "bin/mp_span_from_pdb.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/interface_energy.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/analysis/interface_energy.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/fit_helix_in_map.default.linuxclangrelease" as "bin/fit_helix_in_map.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_features.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rna/util/rna_features.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/test_SiteConstraint.default.linuxclangrelease" as "bin/test_SiteConstraint.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/make_ray_files.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/darc/make_ray_files.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/zinc2_homodimer_design.default.linuxclangrelease" as "bin/zinc2_homodimer_design.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/ld_converter.default.linuxclangrelease" as "bin/ld_converter.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/CstfileToTheozymePDB.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/enzdes/CstfileToTheozymePDB.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/docking_protocol.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/docking/docking_protocol.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/tensorflow_manager_multi_input_test.default.linuxclangrelease" as "bin/tensorflow_manager_multi_input_test.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/vip.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/vip.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/fix_alignment_to_match_pdb.default.linuxclangrelease" as "bin/fix_alignment_to_match_pdb.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/mp_quick_relax.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/jkleman/mp_quick_relax.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/simple_dna_regression_test.default.linuxclangrelease" as "bin/simple_dna_regression_test.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/ligand_dock.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/ligand_docking/ligand_dock.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/r_pdb2top.default.linuxclangrelease" as "bin/r_pdb2top.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/iterhybrid_selector.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/comparative_modeling/iterhybrid_selector.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/remodel.default.linuxclangrelease" as "bin/remodel.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/number_of_residuetypes.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/doug/number_of_residuetypes.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/mpdocking_setup.default.linuxclangrelease" as "bin/mpdocking_setup.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/inv_kin_lig_loop_design.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/murphp/inv_kin_lig_loop_design.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/loophash.default.linuxclangrelease" as "bin/loophash.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/ligands_to_database.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/delucasl/ligands_to_database.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/rosettaDNA.default.linuxclangrelease" as "bin/rosettaDNA.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/HDXEnergy.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/analysis/HDXEnergy.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/build_full_model.default.linuxclangrelease" as "bin/build_full_model.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/mp_lipid_acc.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/membrane/mp_lipid_acc.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/mr_protocols.default.linuxclangrelease" as "bin/mr_protocols.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/remove_duplicate_motifs.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/motif_ligand_discovery/remove_duplicate_motifs.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/match.default.linuxclangrelease" as "bin/match.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/RescorePDDF.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/dgront/saxs/RescorePDDF.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/interface_energy.default.linuxclangrelease" as "bin/interface_energy.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/score_aln.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/comparative_modeling/score_aln.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_features.default.linuxclangrelease" as "bin/rna_features.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/simple_cycpep_predict.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/cyclic_peptide/simple_cycpep_predict.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/make_ray_files.default.linuxclangrelease" as "bin/make_ray_files.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/dgdp.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/electron_density/dgdp.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/docking_protocol.default.linuxclangrelease" as "bin/docking_protocol.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/CstfileToTheozymePDB.default.linuxclangrelease" as "bin/CstfileToTheozymePDB.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/fit_helixparams.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/vmullig/fit_helixparams.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/range_relax.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/jkleman/range_relax.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/vip.default.linuxclangrelease" as "bin/vip.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/hydrate.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/hydrate/hydrate.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/mp_quick_relax.default.linuxclangrelease" as "bin/mp_quick_relax.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/test_explicit_membrane_input.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/tests/test_explicit_membrane_input.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/ligand_dock.default.linuxclangrelease" as "bin/ligand_dock.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/assemble_domains_jd2.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/james/assemble_domains_jd2.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/number_of_residuetypes.default.linuxclangrelease" as "bin/number_of_residuetypes.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/zinc_heterodimer_design.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/design/zinc_heterodimer_design.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/remove_duplicate_motifs.default.linuxclangrelease" as "bin/remove_duplicate_motifs.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/RescorePDDF.default.linuxclangrelease" as "bin/RescorePDDF.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/mp_lipid_acc.default.linuxclangrelease" as "bin/mp_lipid_acc.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/ligands_to_database.default.linuxclangrelease" as "bin/ligands_to_database.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/HDXEnergy.default.linuxclangrelease" as "bin/HDXEnergy.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/iterhybrid_selector.default.linuxclangrelease" as "bin/iterhybrid_selector.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/inv_kin_lig_loop_design.default.linuxclangrelease" as "bin/inv_kin_lig_loop_design.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/score_aln.default.linuxclangrelease" as "bin/score_aln.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/format_converter.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/momeara/format_converter.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/antibody_designer.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/antibody/antibody_designer.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/hierarchical_clustering.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/dgront/hierarchical_clustering.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/motif_dna_packer_design.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/sthyme/motif_dna_packer_design.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/mp_domain_assembly.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/membrane/mp_domain_assembly.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/zinc_statistic_generator.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/sewing/ligand_sewing_tools/zinc_statistic_generator.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/MSA_design.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/ashworth/MSA_design.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/test_explicit_membrane_input.default.linuxclangrelease" as "bin/test_explicit_membrane_input.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/hydrate.default.linuxclangrelease" as "bin/hydrate.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/fit_helixparams.default.linuxclangrelease" as "bin/fit_helixparams.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/dgdp.default.linuxclangrelease" as "bin/dgdp.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/range_relax.default.linuxclangrelease" as "bin/range_relax.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/simple_cycpep_predict.default.linuxclangrelease" as "bin/simple_cycpep_predict.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/coupled_moves.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/coupled_moves/coupled_moves.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/jd2test.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/jd2/jd2test.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/version_scorefunction.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/andrew/version_scorefunction.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/r_broker.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/olli/r_broker.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/tensorflow_test2.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/jackmaguire/tensorflow_test2.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/silent2frag.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/mike/silent2frag.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/sequence_tolerance.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/sequence_tolerance.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/zinc_heterodimer_design.default.linuxclangrelease" as "bin/zinc_heterodimer_design.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/assemble_domains_jd2.default.linuxclangrelease" as "bin/assemble_domains_jd2.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/backside_hbond_finder.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/sewing/ligand_sewing_tools/backside_hbond_finder.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/PeptideDeriver.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/analysis/PeptideDeriver.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/format_converter.default.linuxclangrelease" as "bin/format_converter.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/SymDock.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/SymDock.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/antibody_designer.default.linuxclangrelease" as "bin/antibody_designer.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/trRosetta.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/trRosetta/trRosetta.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/hierarchical_clustering.default.linuxclangrelease" as "bin/hierarchical_clustering.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/edge_file_generator.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/sewing/edge_file_generator.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/motif_dna_packer_design.default.linuxclangrelease" as "bin/motif_dna_packer_design.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/sweep_respair_energies.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/andrew/sweep_respair_energies.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/mp_domain_assembly.default.linuxclangrelease" as "bin/mp_domain_assembly.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/template_features.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/comparative_modeling/template_features.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/zinc_statistic_generator.default.linuxclangrelease" as "bin/zinc_statistic_generator.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/MSA_design.default.linuxclangrelease" as "bin/MSA_design.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/hotspot_hash.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/jcorn/hotspot_hash.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/test_d_l_readin.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/awatkins/test_d_l_readin.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/coupled_moves.default.linuxclangrelease" as "bin/coupled_moves.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/zinc2_homodimer_setup.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/design/zinc2_homodimer_setup.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/jd2test.default.linuxclangrelease" as "bin/jd2test.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/recces_turner.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/recces/legacy/recces_turner.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/version_scorefunction.default.linuxclangrelease" as "bin/version_scorefunction.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_thread_and_minimize.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rna/thread/rna_thread_and_minimize.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/r_broker.default.linuxclangrelease" as "bin/r_broker.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/atom_energy_breakdown.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/analysis/atom_energy_breakdown.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/tensorflow_test2.default.linuxclangrelease" as "bin/tensorflow_test2.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/spheregrinder.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/comparative_modeling/spheregrinder.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/silent2frag.default.linuxclangrelease" as "bin/silent2frag.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/tensorflow_test1.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/vmullig/tensorflow_test1.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/PeptideDeriver.default.linuxclangrelease" as "bin/PeptideDeriver.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/sewing_hasher.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/legacy_sewing/sewing_hasher.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/backside_hbond_finder.default.linuxclangrelease" as "bin/backside_hbond_finder.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/combine_silent.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/combine_silent.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/SymDock.default.linuxclangrelease" as "bin/SymDock.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/sequence_tolerance.default.linuxclangrelease" as "bin/sequence_tolerance.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/rb_entropy.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/rhiju/rb_entropy.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/jscore.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/james/jscore.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/trRosetta.default.linuxclangrelease" as "bin/trRosetta.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/test_C-terminal_conjugation.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/tests/test_C-terminal_conjugation.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/edge_file_generator.default.linuxclangrelease" as "bin/edge_file_generator.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/antibody_graft.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/antibody/antibody_graft.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/template_features.default.linuxclangrelease" as "bin/template_features.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/erraser2.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rna/erraser/erraser2.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/sweep_respair_energies.default.linuxclangrelease" as "bin/sweep_respair_energies.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/exposed_strand_finder.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/scenarios/beta_strand_homodimer_design/exposed_strand_finder.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/hotspot_hash.default.linuxclangrelease" as "bin/hotspot_hash.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/test_d_l_readin.default.linuxclangrelease" as "bin/test_d_l_readin.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/hbs_design.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/noncanonical_backbones/hbs_design.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/create_clash-based_repack_shell.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/design/create_clash-based_repack_shell.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/recces_turner.default.linuxclangrelease" as "bin/recces_turner.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/mp_range_relax.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/membrane/mp_range_relax.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/zinc2_homodimer_setup.default.linuxclangrelease" as "bin/zinc2_homodimer_setup.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/mp_seqrecov.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/membrane/mp_seqrecov.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_thread_and_minimize.default.linuxclangrelease" as "bin/rna_thread_and_minimize.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/homodimer_maker.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/scenarios/beta_strand_homodimer_design/homodimer_maker.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/atom_energy_breakdown.default.linuxclangrelease" as "bin/atom_energy_breakdown.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/tensorflow_test1.default.linuxclangrelease" as "bin/tensorflow_test1.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/pocket_suggest_target_residues_by_ddg.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/pocket/pocket_suggest_target_residues_by_ddg.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/spheregrinder.default.linuxclangrelease" as "bin/spheregrinder.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/fragmentpicker_integration_demo.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/dgront/fragmentpicker/fragmentpicker_integration_demo.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_design.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rna/rna_design.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/sewing_hasher.default.linuxclangrelease" as "bin/sewing_hasher.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/per_residue_solvent_exposure.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/analysis/per_residue_solvent_exposure.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/combine_silent.default.linuxclangrelease" as "bin/combine_silent.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/minimize.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/minimize.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/rb_entropy.default.linuxclangrelease" as "bin/rb_entropy.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/ligand_transform_with_pcs.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/nmr/ligand_transform_with_pcs.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/antibody_graft.default.linuxclangrelease" as "bin/antibody_graft.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/test_C-terminal_conjugation.default.linuxclangrelease" as "bin/test_C-terminal_conjugation.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/jscore.default.linuxclangrelease" as "bin/jscore.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/erraser2.default.linuxclangrelease" as "bin/erraser2.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/FiberDiffractionTest.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/wojtek/FiberDiffractionTest.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/score_jd2.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/analysis/score_jd2.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/FlexPepDocking.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/flexpep_docking/FlexPepDocking.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/fragment_picker.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/fragment_picker.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/exposed_strand_finder.default.linuxclangrelease" as "bin/exposed_strand_finder.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/validate_rosetta_script.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rosetta_scripts/validate_rosetta_script.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/create_clash-based_repack_shell.default.linuxclangrelease" as "bin/create_clash-based_repack_shell.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/mp_range_relax.default.linuxclangrelease" as "bin/mp_range_relax.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_suitename.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rna/util/rna_suitename.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/pepspec_anchor_dock.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/pepspec/pepspec_anchor_dock.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/mp_seqrecov.default.linuxclangrelease" as "bin/mp_seqrecov.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/cl_complex_rescore.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/analysis/cl_complex_rescore.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/hbs_design.default.linuxclangrelease" as "bin/hbs_design.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/backrub.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/backrub.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/homodimer_maker.default.linuxclangrelease" as "bin/homodimer_maker.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/LoopAnalyzer.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/smlewis/LoopAnalyzer.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/pocket_suggest_target_residues_by_ddg.default.linuxclangrelease" as "bin/pocket_suggest_target_residues_by_ddg.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/UnfoldedStateEnergyCalculator.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/ncaa_utilities/UnfoldedStateEnergyCalculator.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_design.default.linuxclangrelease" as "bin/rna_design.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/test_rosetta_thread_manager_advanced_API.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/vmullig/test_rosetta_thread_manager_advanced_API.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/fragmentpicker_integration_demo.default.linuxclangrelease" as "bin/fragmentpicker_integration_demo.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/dump_capped_residue.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/dump_capped_residue.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/minimize.default.linuxclangrelease" as "bin/minimize.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/UBQ_E2_thioester.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/scenarios/chemically_conjugated_docking/UBQ_E2_thioester.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/per_residue_solvent_exposure.default.linuxclangrelease" as "bin/per_residue_solvent_exposure.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/test_carbohydrate_scoring.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/tests/test_carbohydrate_scoring.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/ligand_transform_with_pcs.default.linuxclangrelease" as "bin/ligand_transform_with_pcs.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/FiberDiffractionFreeSet.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/fiber_diffraction/FiberDiffractionFreeSet.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/FiberDiffractionTest.default.linuxclangrelease" as "bin/FiberDiffractionTest.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/antibody_numbering_converter.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/antibody/antibody_numbering_converter.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/score_jd2.default.linuxclangrelease" as "bin/score_jd2.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/generate_database_cache.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/internal/generate_database_cache.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/fragment_picker.default.linuxclangrelease" as "bin/fragment_picker.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/FlexPepDocking.default.linuxclangrelease" as "bin/FlexPepDocking.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/GlycanDock.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/carbohydrates/GlycanDock.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/peptoid_design.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/noncanonical_backbones/peptoid_design.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_suitename.default.linuxclangrelease" as "bin/rna_suitename.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/validate_rosetta_script.default.linuxclangrelease" as "bin/validate_rosetta_script.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/mpi_msd.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/design/mpi_msd.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/score.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/analysis/score.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/antibody_numbering_converter.default.linuxclangrelease" as "bin/antibody_numbering_converter.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/generate_database_cache.default.linuxclangrelease" as "bin/generate_database_cache.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/UBQ_E2_thioester.default.linuxclangrelease" as "bin/UBQ_E2_thioester.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/dump_capped_residue.default.linuxclangrelease" as "bin/dump_capped_residue.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/LoopAnalyzer.default.linuxclangrelease" as "bin/LoopAnalyzer.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/cl_complex_rescore.default.linuxclangrelease" as "bin/cl_complex_rescore.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/pepspec_anchor_dock.default.linuxclangrelease" as "bin/pepspec_anchor_dock.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/UnfoldedStateEnergyCalculator.default.linuxclangrelease" as "bin/UnfoldedStateEnergyCalculator.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/FiberDiffractionFreeSet.default.linuxclangrelease" as "bin/FiberDiffractionFreeSet.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/test_carbohydrate_scoring.default.linuxclangrelease" as "bin/test_carbohydrate_scoring.default.linuxclangrelease"
run_generate_command(["bin/generate_database_cache.default.linuxclangrelease"], ["build/src/release/linux/5.4/64/x86/clang/10.0/default/generate_database_cache.default.linuxclangrelease"])
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/test_rosetta_thread_manager_advanced_API.default.linuxclangrelease" as "bin/test_rosetta_thread_manager_advanced_API.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/backrub.default.linuxclangrelease" as "bin/backrub.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/incorporate_motifs.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/motif_tools/incorporate_motifs.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/GlycanDock.default.linuxclangrelease" as "bin/GlycanDock.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_graft.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rna/util/rna_graft.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/UBQ_Gp_LYX-Cterm.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/scenarios/chemically_conjugated_docking/UBQ_Gp_LYX-Cterm.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/version_mpscorefxn.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/ralford/version_mpscorefxn.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/AnchoredDesign.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/interface_design/anchored_design/AnchoredDesign.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/swa_rna_main.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/stepwise/legacy/swa_rna_main.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/doug_dock_design_min_mod2_cal_cal.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/scenarios/doug_dock_design_min_mod2_cal_cal.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/residue_energy_breakdown.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/analysis/residue_energy_breakdown.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/mutate.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/mutate.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/make_exemplar.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/pocket/make_exemplar.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/minirosetta_graphics.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/boinc/minirosetta_graphics.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/AnchorFinder.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/interface_design/anchored_design/AnchorFinder.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/mpi_msd.default.linuxclangrelease" as "bin/mpi_msd.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/minimize_with_cst.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/ddg/minimize_with_cst.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/peptoid_design.default.linuxclangrelease" as "bin/peptoid_design.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_denovo.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rna/rna_denovo.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/score.default.linuxclangrelease" as "bin/score.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/make_motif_tables.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/motif_dock/make_motif_tables.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/incorporate_motifs.default.linuxclangrelease" as "bin/incorporate_motifs.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/burial_measure_centroid.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/maprahamian/burial_measure_centroid.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/UBQ_Gp_LYX-Cterm.default.linuxclangrelease" as "bin/UBQ_Gp_LYX-Cterm.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/design_contrast_and_statistic.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/benchmark/scientific/design_contrast_and_statistic.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_graft.default.linuxclangrelease" as "bin/rna_graft.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/calibur.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/clustering/calibur.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/version_mpscorefxn.default.linuxclangrelease" as "bin/version_mpscorefxn.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_motif.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rna/util/rna_motif.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/AnchoredDesign.default.linuxclangrelease" as "bin/AnchoredDesign.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/cst_info.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/analysis/cst_info.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/swa_rna_main.default.linuxclangrelease" as "bin/swa_rna_main.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/identify_cdr_clusters.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/antibody/identify_cdr_clusters.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/doug_dock_design_min_mod2_cal_cal.default.linuxclangrelease" as "bin/doug_dock_design_min_mod2_cal_cal.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/mp_dock.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/membrane/mp_dock.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/residue_energy_breakdown.default.linuxclangrelease" as "bin/residue_energy_breakdown.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/loodo.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/loop_modeling/loodo.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/mutate.default.linuxclangrelease" as "bin/mutate.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/make_exemplar.default.linuxclangrelease" as "bin/make_exemplar.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/determine_real_motifs.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/motif_ligand_discovery/determine_real_motifs.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/denovo_density.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/electron_density/denovo_density.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/minirosetta_graphics.default.linuxclangrelease" as "bin/minirosetta_graphics.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/AnchorFinder.default.linuxclangrelease" as "bin/AnchorFinder.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/mixedMC.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/ameya/mixedMC.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/test_tensorflow_graph_convolutional_nn.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/vmullig/test_tensorflow_graph_convolutional_nn.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/minimize_with_cst.default.linuxclangrelease" as "bin/minimize_with_cst.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/struc_set_fragment_picker.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/struc_set_fragment_picker.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_denovo.default.linuxclangrelease" as "bin/rna_denovo.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/make_motif_tables.default.linuxclangrelease" as "bin/make_motif_tables.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/test_RingConformationMover.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/tests/test_RingConformationMover.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/snugdock.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/antibody/snugdock.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/burial_measure_centroid.default.linuxclangrelease" as "bin/burial_measure_centroid.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/test_CCD_loop_closure.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/tests/test_CCD_loop_closure.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/design_contrast_and_statistic.default.linuxclangrelease" as "bin/design_contrast_and_statistic.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/glycan_clash_check.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/carbohydrates/glycan_clash_check.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/calibur.default.linuxclangrelease" as "bin/calibur.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/sequence_recovery.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/design/sequence_recovery.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_motif.default.linuxclangrelease" as "bin/rna_motif.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/backrub_pilot.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/colin/backrub_pilot.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
[0mapps.public.generate_database_cache: [0mGenerated default Dunbrack binary cache: /home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/database/rotamer/shapovalov/StpDwn_0-0-0/Dunbrack10.lib.bin
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/cst_info.default.linuxclangrelease" as "bin/cst_info.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/glycosyltransfer.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/post-translational_modification/glycosyltransfer.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/identify_cdr_clusters.default.linuxclangrelease" as "bin/identify_cdr_clusters.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/mg_modeler.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/magnesium/mg_modeler.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
[0mapps.public.generate_database_cache: [0mGenerated Dunbrack binary cache for -beta: /home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/database/rotamer/beta_nov2016/Dunbrack10.lib.bin
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/mp_dock.default.linuxclangrelease" as "bin/mp_dock.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_idealize.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rna/util/rna_idealize.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/loodo.default.linuxclangrelease" as "bin/loodo.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/drrafter_error_estimation.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/DRRAFTER/drrafter_error_estimation.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/determine_real_motifs.default.linuxclangrelease" as "bin/determine_real_motifs.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/oop_creator.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/kdrew/oop_creator.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
[0mapps.public.generate_database_cache: [0mGenerated Dunbrack binary cache for -restore_talaris_behavior: /home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/database/rotamer/ExtendedOpt1-5/Dunbrack10.lib.bin
[0mapps.public.generate_database_cache: [0mGenerated Dunbrack binary cache for -restore_pre_talaris_2013_behavior: /home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/database/rotamer/bbdep02.May.sortlib.Dunbrack02.lib.bin
[0mapps.public.generate_database_cache: [0mGenerated Dunbrack binary cache for -restore_pre_talaris_2013_behavior -correct: /home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/database/rotamer/bbdep02.May.sortlib-correct.12.2010.Dunbrack02.lib.bin
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/denovo_density.default.linuxclangrelease" as "bin/denovo_density.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/tensorflow_manager_multirun_test.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/jackmaguire/tensorflow_manager_multirun_test.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/mixedMC.default.linuxclangrelease" as "bin/mixedMC.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/test_tensorflow_graph_convolutional_nn.default.linuxclangrelease" as "bin/test_tensorflow_graph_convolutional_nn.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/avrg_silent.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/comparative_modeling/avrg_silent.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/cloud_app.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/olli/cloud_app.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/stepwise.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/stepwise/stepwise.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/struc_set_fragment_picker.default.linuxclangrelease" as "bin/struc_set_fragment_picker.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/relax.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/relax.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/test_RingConformationMover.default.linuxclangrelease" as "bin/test_RingConformationMover.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/read_tensor.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/rhiju/read_tensor.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/snugdock.default.linuxclangrelease" as "bin/snugdock.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/batchrelax.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/mike/batchrelax.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/glycan_clash_check.default.linuxclangrelease" as "bin/glycan_clash_check.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/performance_benchmark.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/benchmark/performance/performance_benchmark.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/sequence_recovery.default.linuxclangrelease" as "bin/sequence_recovery.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/density_tools.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/electron_density/density_tools.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/backrub_pilot.default.linuxclangrelease" as "bin/backrub_pilot.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/glycosyltransfer.default.linuxclangrelease" as "bin/glycosyltransfer.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/MakeSegmentFile.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/pose_sewing/MakeSegmentFile.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/test_CCD_loop_closure.default.linuxclangrelease" as "bin/test_CCD_loop_closure.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/gen_lig_grids.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/match/gen_lig_grids.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/mg_modeler.default.linuxclangrelease" as "bin/mg_modeler.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_database.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rna/util/rna_database.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_idealize.default.linuxclangrelease" as "bin/rna_idealize.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/DARC.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/darc/DARC.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/oop_creator.default.linuxclangrelease" as "bin/oop_creator.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/nucleobase_sample_around.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rna/util/nucleobase_sample_around.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/drrafter_error_estimation.default.linuxclangrelease" as "bin/drrafter_error_estimation.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/tensorflow_manager_multirun_test.default.linuxclangrelease" as "bin/tensorflow_manager_multirun_test.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/mp_symdock.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/membrane/mp_symdock.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/mp_find_interface.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/jkleman/mp_find_interface.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/generate_ligand_start_position_file.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/delucasl/generate_ligand_start_position_file.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/avrg_silent.default.linuxclangrelease" as "bin/avrg_silent.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/SID_rescore.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/jtseffer/SID_rescore.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/cloud_app.default.linuxclangrelease" as "bin/cloud_app.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/fast_clustering.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/analysis/fast_clustering.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/stepwise.default.linuxclangrelease" as "bin/stepwise.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/extract_atomtree_diffs.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/ligand_docking/extract_atomtree_diffs.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/relax.default.linuxclangrelease" as "bin/relax.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/energy_based_clustering.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/clustering/energy_based_clustering.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/read_tensor.default.linuxclangrelease" as "bin/read_tensor.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/docking_prepack_protocol.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/docking/docking_prepack_protocol.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/batchrelax.default.linuxclangrelease" as "bin/batchrelax.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/analyze_base_pairing.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rna/util/analyze_base_pairing.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/performance_benchmark.default.linuxclangrelease" as "bin/performance_benchmark.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/Cyclize.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/doug/Cyclize.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/density_tools.default.linuxclangrelease" as "bin/density_tools.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/min_pack_min.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/stranges/min_pack_min.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/MakeSegmentFile.default.linuxclangrelease" as "bin/MakeSegmentFile.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/gen_lig_grids.default.linuxclangrelease" as "bin/gen_lig_grids.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/load_membrane_pose.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/membrane/load_membrane_pose.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/ligand_discovery_search_protocol.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/motif_ligand_discovery/ligand_discovery_search_protocol.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_database.default.linuxclangrelease" as "bin/rna_database.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/RescoreSAXS.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/dgront/saxs/RescoreSAXS.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/DARC.default.linuxclangrelease" as "bin/DARC.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/loopmodel.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/loop_modeling/loopmodel.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/nucleobase_sample_around.default.linuxclangrelease" as "bin/nucleobase_sample_around.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/test_trRosettaConstraintGenerator.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/vmullig/test_trRosettaConstraintGenerator.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/mp_symdock.default.linuxclangrelease" as "bin/mp_symdock.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/count_cycpep_sequences.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/cyclic_peptide/count_cycpep_sequences.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/fast_clustering.default.linuxclangrelease" as "bin/fast_clustering.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/SID_rescore.default.linuxclangrelease" as "bin/SID_rescore.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/generate_ligand_start_position_file.default.linuxclangrelease" as "bin/generate_ligand_start_position_file.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/mp_find_interface.default.linuxclangrelease" as "bin/mp_find_interface.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/extract_atomtree_diffs.default.linuxclangrelease" as "bin/extract_atomtree_diffs.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/test_EnergyMethodOptions.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/tests/test_EnergyMethodOptions.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/ligand_rpkmin.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/ligand_docking/ligand_rpkmin.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/interface_statistics.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/jkleman/interface_statistics.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/per_residue_sc_sasa.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/jkleman/per_residue_sc_sasa.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/design_glycans.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/pacheco/design_glycans.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/analyze_base_pairing.default.linuxclangrelease" as "bin/analyze_base_pairing.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/energy_based_clustering.default.linuxclangrelease" as "bin/energy_based_clustering.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/docking_prepack_protocol.default.linuxclangrelease" as "bin/docking_prepack_protocol.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/supercharge.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/design/supercharge.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/shobuns.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/analysis/shobuns.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/revert_design_to_native.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rosetta_scripts/revert_design_to_native.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/Cyclize.default.linuxclangrelease" as "bin/Cyclize.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/hbonds_test.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/momeara/hbonds_test.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/min_pack_min.default.linuxclangrelease" as "bin/min_pack_min.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/mm_params.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/colin/mm_params.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/load_membrane_pose.default.linuxclangrelease" as "bin/load_membrane_pose.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/ComputeSAXSSpectrum.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/dgront/saxs/ComputeSAXSSpectrum.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/ligand_discovery_search_protocol.default.linuxclangrelease" as "bin/ligand_discovery_search_protocol.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/N-terminal_acetylation.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/post-translational_modification/N-terminal_acetylation.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/RescoreSAXS.default.linuxclangrelease" as "bin/RescoreSAXS.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/loopmodel.default.linuxclangrelease" as "bin/loopmodel.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/surface_docking.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/surface_docking/surface_docking.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/color_by_lipid_type.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/ralford/color_by_lipid_type.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/test_trRosettaConstraintGenerator.default.linuxclangrelease" as "bin/test_trRosettaConstraintGenerator.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/sym_multicomp_test.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/will/sym_multicomp_test.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/count_cycpep_sequences.default.linuxclangrelease" as "bin/count_cycpep_sequences.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/optE_parallel.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/weight_optimization/optE_parallel.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/ligand_rpkmin.default.linuxclangrelease" as "bin/ligand_rpkmin.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/mp_viewer.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/membrane/mp_viewer.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/per_residue_sc_sasa.default.linuxclangrelease" as "bin/per_residue_sc_sasa.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/metal_site_finder.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/sewing/ligand_sewing_tools/metal_site_finder.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/interface_statistics.default.linuxclangrelease" as "bin/interface_statistics.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/sc.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/analysis/sc.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/test_EnergyMethodOptions.default.linuxclangrelease" as "bin/test_EnergyMethodOptions.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/supercharge.default.linuxclangrelease" as "bin/supercharge.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/design_glycans.default.linuxclangrelease" as "bin/design_glycans.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/cmaes_minimizer_test.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/kdrew/cmaes_minimizer_test.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/full_length_model.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/comparative_modeling/full_length_model.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/r_rmsf.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/olli/r_rmsf.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/shobuns.default.linuxclangrelease" as "bin/shobuns.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/revert_design_to_native.default.linuxclangrelease" as "bin/revert_design_to_native.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/hbonds_test.default.linuxclangrelease" as "bin/hbonds_test.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/tensorflow_manager_test1.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/jackmaguire/tensorflow_manager_test1.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/restype_converter.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/restype_converter.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/resample_full_model.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/stepwise/resample_full_model.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/mm_params.default.linuxclangrelease" as "bin/mm_params.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/loophash_createdb.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/mike/loophash_createdb.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/N-terminal_acetylation.default.linuxclangrelease" as "bin/N-terminal_acetylation.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/ComputeSAXSSpectrum.default.linuxclangrelease" as "bin/ComputeSAXSSpectrum.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/parcs_ccs_calc.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/analysis/parcs_ccs_calc.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/grower_prep.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/electron_density/grower_prep.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/color_by_lipid_type.default.linuxclangrelease" as "bin/color_by_lipid_type.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/generate_starting_zinc_sites.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/sewing/ligand_sewing_tools/generate_starting_zinc_sites.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/surface_docking.default.linuxclangrelease" as "bin/surface_docking.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/theta_ligand.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/darc/theta_ligand.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/sym_multicomp_test.default.linuxclangrelease" as "bin/sym_multicomp_test.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/optE_parallel.default.linuxclangrelease" as "bin/optE_parallel.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/enzyme_design.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/enzdes/enzyme_design.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/segment_file_generator.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/sewing/segment_file_generator.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/mp_viewer.default.linuxclangrelease" as "bin/mp_viewer.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/zn_match_symmdock.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/andrew/zn_match_symmdock.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/metal_site_finder.default.linuxclangrelease" as "bin/metal_site_finder.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/super_aln.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/comparative_modeling/super_aln.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/sc.default.linuxclangrelease" as "bin/sc.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/partial_thread.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/comparative_modeling/partial_thread.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/cmaes_minimizer_test.default.linuxclangrelease" as "bin/cmaes_minimizer_test.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/full_length_model.default.linuxclangrelease" as "bin/full_length_model.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/polyaramid_test.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/pilot/awatkins/polyaramid_test.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3 -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_thread.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/rna/thread/rna_thread.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/r_rmsf.default.linuxclangrelease" as "bin/r_rmsf.default.linuxclangrelease"
clang++ -o build/src/release/linux/5.4/64/x86/clang/10.0/default/InterfaceAnalyzer.default.linuxclangrelease -stdlib=libstdc++ -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/src/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=/home/benchmark/w/rosetta-2.hpc-c/rosetta/commits/rosetta/source/build/external/release/linux/5.4/64/x86/clang/10.0/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/5.4/64/x86/clang/10.0/default/apps/public/analysis/InterfaceAnalyzer.o -Lexternal/lib -Lbuild/src/release/linux/5.4/64/x86/clang/10.0/default -Lsrc -Lbuild/external/release/linux/5.4/64/x86/clang/10.0/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lxml2 -lzmq -lrdkit -lbcl -lcmaes
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/resample_full_model.default.linuxclangrelease" as "bin/resample_full_model.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/tensorflow_manager_test1.default.linuxclangrelease" as "bin/tensorflow_manager_test1.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/restype_converter.default.linuxclangrelease" as "bin/restype_converter.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/loophash_createdb.default.linuxclangrelease" as "bin/loophash_createdb.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/parcs_ccs_calc.default.linuxclangrelease" as "bin/parcs_ccs_calc.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/grower_prep.default.linuxclangrelease" as "bin/grower_prep.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/generate_starting_zinc_sites.default.linuxclangrelease" as "bin/generate_starting_zinc_sites.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/theta_ligand.default.linuxclangrelease" as "bin/theta_ligand.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/enzyme_design.default.linuxclangrelease" as "bin/enzyme_design.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/segment_file_generator.default.linuxclangrelease" as "bin/segment_file_generator.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/zn_match_symmdock.default.linuxclangrelease" as "bin/zn_match_symmdock.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/super_aln.default.linuxclangrelease" as "bin/super_aln.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/partial_thread.default.linuxclangrelease" as "bin/partial_thread.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/polyaramid_test.default.linuxclangrelease" as "bin/polyaramid_test.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/InterfaceAnalyzer.default.linuxclangrelease" as "bin/InterfaceAnalyzer.default.linuxclangrelease"
Install file: "build/src/release/linux/5.4/64/x86/clang/10.0/default/rna_thread.default.linuxclangrelease" as "bin/rna_thread.default.linuxclangrelease"
scons: done building targets.
