Index – _

__add__() (pyrosetta.rosetta.ObjexxFCL.byte method) (pyrosetta.rosetta.ObjexxFCL.ubyte method) (pyrosetta.rosetta.utility.CSI_Sequence method) __call__() (pyrosetta.rosetta.basic.Tracer method) (pyrosetta.rosetta.ObjexxFCL.Dimension method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpression method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCon method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCube method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionDiv method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMax method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMin method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMul method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionPow method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionRef method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSquare method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSub method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSum method) (pyrosetta.rosetta.ObjexxFCL.Fstring method) (pyrosetta.rosetta.ObjexxFCL.Fsubstring method) __delattr__ (pyrosetta.CD attribute) (pyrosetta.EnergyMethod attribute) (pyrosetta.rosetta.ObjexxFCL.ChunkExponent attribute) (pyrosetta.rosetta.ObjexxFCL.Cstring attribute) (pyrosetta.rosetta.ObjexxFCL.Dimension attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpression attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCon attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCube attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionDiv attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMax attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMin attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMul attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionPow attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionRef attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSquare attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSub attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSum attribute) (pyrosetta.rosetta.ObjexxFCL.DynamicIndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.Fstring attribute) (pyrosetta.rosetta.ObjexxFCL.Fsubstring attribute) (pyrosetta.rosetta.ObjexxFCL.IndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.Observer attribute) (pyrosetta.rosetta.ObjexxFCL.ObserverMulti attribute) (pyrosetta.rosetta.ObjexxFCL.ObserverSingle attribute) (pyrosetta.rosetta.ObjexxFCL.Star attribute) (pyrosetta.rosetta.ObjexxFCL.StaticIndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.byte attribute) (pyrosetta.rosetta.ObjexxFCL.ubyte attribute) (pyrosetta.rosetta.W128_T attribute) (pyrosetta.rosetta.basic.Emitter attribute) (pyrosetta.rosetta.basic.ExecutionResult attribute) (pyrosetta.rosetta.basic.JsonEmitter attribute) (pyrosetta.rosetta.basic.PyTracer attribute) (pyrosetta.rosetta.basic.Report attribute) (pyrosetta.rosetta.basic.Reporter attribute) (pyrosetta.rosetta.basic.Tracer attribute) (pyrosetta.rosetta.basic.TracerManager attribute) (pyrosetta.rosetta.basic.TracerOptions attribute) (pyrosetta.rosetta.basic.TracerPriority attribute) (pyrosetta.rosetta.basic.YamlEmitter attribute) (pyrosetta.rosetta.numeric.MultiDimensionalHistogram attribute) (pyrosetta.rosetta.protocols.LoopRebuild attribute) (pyrosetta.rosetta.protocols.LoopRefine attribute) (pyrosetta.rosetta.utility.CSI_Sequence attribute) (pyrosetta.rosetta.utility.SimulateMPI attribute) (pyrosetta.rosetta.utility.recent_history_queue attribute) (pyrosetta.rosetta.utility.simulate_mpi_message_type attribute) (pyrosetta.rosetta.utility.subset_mapping attribute) __dir__() (pyrosetta.CD method) (pyrosetta.EnergyMethod method) (pyrosetta.rosetta.ObjexxFCL.ChunkExponent method) (pyrosetta.rosetta.ObjexxFCL.Cstring method) (pyrosetta.rosetta.ObjexxFCL.Dimension method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpression method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCon method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCube method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionDiv method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMax method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMin method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMul method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionPow method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionRef method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSquare method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSub method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSum method) (pyrosetta.rosetta.ObjexxFCL.DynamicIndexRange method) (pyrosetta.rosetta.ObjexxFCL.Fstring method) (pyrosetta.rosetta.ObjexxFCL.Fsubstring method) (pyrosetta.rosetta.ObjexxFCL.IndexRange method) (pyrosetta.rosetta.ObjexxFCL.Observer method) (pyrosetta.rosetta.ObjexxFCL.ObserverMulti method) (pyrosetta.rosetta.ObjexxFCL.ObserverSingle method) (pyrosetta.rosetta.ObjexxFCL.Star method) (pyrosetta.rosetta.ObjexxFCL.StaticIndexRange method) (pyrosetta.rosetta.ObjexxFCL.byte method) (pyrosetta.rosetta.ObjexxFCL.ubyte method) (pyrosetta.rosetta.W128_T method) (pyrosetta.rosetta.basic.Emitter method) (pyrosetta.rosetta.basic.ExecutionResult method) (pyrosetta.rosetta.basic.JsonEmitter method) (pyrosetta.rosetta.basic.PyTracer method) (pyrosetta.rosetta.basic.Report method) (pyrosetta.rosetta.basic.Reporter method) (pyrosetta.rosetta.basic.Tracer method) (pyrosetta.rosetta.basic.TracerManager method) (pyrosetta.rosetta.basic.TracerOptions method) (pyrosetta.rosetta.basic.TracerPriority method) (pyrosetta.rosetta.basic.YamlEmitter method) (pyrosetta.rosetta.numeric.MultiDimensionalHistogram method) (pyrosetta.rosetta.protocols.LoopRebuild method) (pyrosetta.rosetta.protocols.LoopRefine method) (pyrosetta.rosetta.utility.CSI_Sequence method) (pyrosetta.rosetta.utility.SimulateMPI method) (pyrosetta.rosetta.utility.recent_history_queue method) (pyrosetta.rosetta.utility.simulate_mpi_message_type method) (pyrosetta.rosetta.utility.subset_mapping method) __dummy__() (in module pyrosetta.rosetta.utility) __eq__ (pyrosetta.CD attribute) (pyrosetta.EnergyMethod attribute) (pyrosetta.rosetta.ObjexxFCL.ChunkExponent attribute) (pyrosetta.rosetta.ObjexxFCL.Cstring attribute) (pyrosetta.rosetta.ObjexxFCL.Dimension attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpression attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCon attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCube attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionDiv attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMax attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMin attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMul attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionPow attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionRef attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSquare attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSub attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSum attribute) (pyrosetta.rosetta.ObjexxFCL.DynamicIndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.Fstring attribute) (pyrosetta.rosetta.ObjexxFCL.Fsubstring attribute) (pyrosetta.rosetta.ObjexxFCL.IndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.Observer attribute) (pyrosetta.rosetta.ObjexxFCL.ObserverMulti attribute) (pyrosetta.rosetta.ObjexxFCL.ObserverSingle attribute) (pyrosetta.rosetta.ObjexxFCL.Star attribute) (pyrosetta.rosetta.ObjexxFCL.StaticIndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.byte attribute) (pyrosetta.rosetta.ObjexxFCL.ubyte attribute) (pyrosetta.rosetta.W128_T attribute) (pyrosetta.rosetta.basic.Emitter attribute) (pyrosetta.rosetta.basic.ExecutionResult attribute) (pyrosetta.rosetta.basic.JsonEmitter attribute) (pyrosetta.rosetta.basic.PyTracer attribute) (pyrosetta.rosetta.basic.Report attribute) (pyrosetta.rosetta.basic.Reporter attribute) (pyrosetta.rosetta.basic.Tracer attribute) (pyrosetta.rosetta.basic.TracerManager attribute) (pyrosetta.rosetta.basic.TracerOptions attribute) (pyrosetta.rosetta.basic.YamlEmitter attribute) (pyrosetta.rosetta.numeric.MultiDimensionalHistogram attribute) (pyrosetta.rosetta.protocols.LoopRebuild attribute) (pyrosetta.rosetta.protocols.LoopRefine attribute) (pyrosetta.rosetta.utility.CSI_Sequence attribute) (pyrosetta.rosetta.utility.SimulateMPI attribute) (pyrosetta.rosetta.utility.recent_history_queue attribute) (pyrosetta.rosetta.utility.subset_mapping attribute) __eq__() (pyrosetta.rosetta.basic.TracerPriority method) (pyrosetta.rosetta.utility.simulate_mpi_message_type method) __format__() (pyrosetta.CD method) (pyrosetta.EnergyMethod method) (pyrosetta.rosetta.ObjexxFCL.ChunkExponent method) (pyrosetta.rosetta.ObjexxFCL.Cstring method) (pyrosetta.rosetta.ObjexxFCL.Dimension method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpression method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCon method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCube method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionDiv method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMax method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMin method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMul method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionPow method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionRef method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSquare method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSub method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSum method) (pyrosetta.rosetta.ObjexxFCL.DynamicIndexRange method) (pyrosetta.rosetta.ObjexxFCL.Fstring method) (pyrosetta.rosetta.ObjexxFCL.Fsubstring method) (pyrosetta.rosetta.ObjexxFCL.IndexRange method) (pyrosetta.rosetta.ObjexxFCL.Observer method) (pyrosetta.rosetta.ObjexxFCL.ObserverMulti method) (pyrosetta.rosetta.ObjexxFCL.ObserverSingle method) (pyrosetta.rosetta.ObjexxFCL.Star method) (pyrosetta.rosetta.ObjexxFCL.StaticIndexRange method) (pyrosetta.rosetta.ObjexxFCL.byte method) (pyrosetta.rosetta.ObjexxFCL.ubyte method) (pyrosetta.rosetta.W128_T method) (pyrosetta.rosetta.basic.Emitter method) (pyrosetta.rosetta.basic.ExecutionResult method) (pyrosetta.rosetta.basic.JsonEmitter method) (pyrosetta.rosetta.basic.PyTracer method) (pyrosetta.rosetta.basic.Report method) (pyrosetta.rosetta.basic.Reporter method) (pyrosetta.rosetta.basic.Tracer method) (pyrosetta.rosetta.basic.TracerManager method) (pyrosetta.rosetta.basic.TracerOptions method) (pyrosetta.rosetta.basic.TracerPriority method) (pyrosetta.rosetta.basic.YamlEmitter method) (pyrosetta.rosetta.numeric.MultiDimensionalHistogram method) (pyrosetta.rosetta.protocols.LoopRebuild method) (pyrosetta.rosetta.protocols.LoopRefine method) (pyrosetta.rosetta.utility.CSI_Sequence method) (pyrosetta.rosetta.utility.SimulateMPI method) (pyrosetta.rosetta.utility.recent_history_queue method) (pyrosetta.rosetta.utility.simulate_mpi_message_type method) (pyrosetta.rosetta.utility.subset_mapping method) __ge__ (pyrosetta.CD attribute) (pyrosetta.EnergyMethod attribute) (pyrosetta.rosetta.ObjexxFCL.ChunkExponent attribute) (pyrosetta.rosetta.ObjexxFCL.Cstring attribute) (pyrosetta.rosetta.ObjexxFCL.Dimension attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpression attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCon attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCube attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionDiv attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMax attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMin attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMul attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionPow attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionRef attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSquare attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSub attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSum attribute) (pyrosetta.rosetta.ObjexxFCL.DynamicIndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.Fstring attribute) (pyrosetta.rosetta.ObjexxFCL.Fsubstring attribute) (pyrosetta.rosetta.ObjexxFCL.IndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.Observer attribute) (pyrosetta.rosetta.ObjexxFCL.ObserverMulti attribute) (pyrosetta.rosetta.ObjexxFCL.ObserverSingle attribute) (pyrosetta.rosetta.ObjexxFCL.Star attribute) (pyrosetta.rosetta.ObjexxFCL.StaticIndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.byte attribute) (pyrosetta.rosetta.ObjexxFCL.ubyte attribute) (pyrosetta.rosetta.W128_T attribute) (pyrosetta.rosetta.basic.Emitter attribute) (pyrosetta.rosetta.basic.ExecutionResult attribute) (pyrosetta.rosetta.basic.JsonEmitter attribute) (pyrosetta.rosetta.basic.PyTracer attribute) (pyrosetta.rosetta.basic.Report attribute) (pyrosetta.rosetta.basic.Reporter attribute) (pyrosetta.rosetta.basic.Tracer attribute) (pyrosetta.rosetta.basic.TracerManager attribute) (pyrosetta.rosetta.basic.TracerOptions attribute) (pyrosetta.rosetta.basic.TracerPriority attribute) (pyrosetta.rosetta.basic.YamlEmitter attribute) (pyrosetta.rosetta.numeric.MultiDimensionalHistogram attribute) (pyrosetta.rosetta.protocols.LoopRebuild attribute) (pyrosetta.rosetta.protocols.LoopRefine attribute) (pyrosetta.rosetta.utility.CSI_Sequence attribute) (pyrosetta.rosetta.utility.SimulateMPI attribute) (pyrosetta.rosetta.utility.recent_history_queue attribute) (pyrosetta.rosetta.utility.simulate_mpi_message_type attribute) (pyrosetta.rosetta.utility.subset_mapping attribute) __getattribute__ (pyrosetta.CD attribute) (pyrosetta.EnergyMethod attribute) (pyrosetta.rosetta.ObjexxFCL.ChunkExponent attribute) (pyrosetta.rosetta.ObjexxFCL.Cstring attribute) (pyrosetta.rosetta.ObjexxFCL.Dimension attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpression attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCon attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCube attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionDiv attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMax attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMin attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMul attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionPow attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionRef attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSquare attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSub attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSum attribute) (pyrosetta.rosetta.ObjexxFCL.DynamicIndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.Fstring attribute) (pyrosetta.rosetta.ObjexxFCL.Fsubstring attribute) (pyrosetta.rosetta.ObjexxFCL.IndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.Observer attribute) (pyrosetta.rosetta.ObjexxFCL.ObserverMulti attribute) (pyrosetta.rosetta.ObjexxFCL.ObserverSingle attribute) (pyrosetta.rosetta.ObjexxFCL.Star attribute) (pyrosetta.rosetta.ObjexxFCL.StaticIndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.byte attribute) (pyrosetta.rosetta.ObjexxFCL.ubyte attribute) (pyrosetta.rosetta.W128_T attribute) (pyrosetta.rosetta.basic.Emitter attribute) (pyrosetta.rosetta.basic.ExecutionResult attribute) (pyrosetta.rosetta.basic.JsonEmitter attribute) (pyrosetta.rosetta.basic.PyTracer attribute) (pyrosetta.rosetta.basic.Report attribute) (pyrosetta.rosetta.basic.Reporter attribute) (pyrosetta.rosetta.basic.Tracer attribute) (pyrosetta.rosetta.basic.TracerManager attribute) (pyrosetta.rosetta.basic.TracerOptions attribute) (pyrosetta.rosetta.basic.TracerPriority attribute) (pyrosetta.rosetta.basic.YamlEmitter attribute) (pyrosetta.rosetta.numeric.MultiDimensionalHistogram attribute) (pyrosetta.rosetta.protocols.LoopRebuild attribute) (pyrosetta.rosetta.protocols.LoopRefine attribute) (pyrosetta.rosetta.utility.CSI_Sequence attribute) (pyrosetta.rosetta.utility.SimulateMPI attribute) (pyrosetta.rosetta.utility.recent_history_queue attribute) (pyrosetta.rosetta.utility.simulate_mpi_message_type attribute) (pyrosetta.rosetta.utility.subset_mapping attribute) __getitem__() (in module pyrosetta.method_bindings.pose) (pyrosetta.rosetta.ObjexxFCL.Cstring method) (pyrosetta.rosetta.ObjexxFCL.Fstring method) (pyrosetta.rosetta.ObjexxFCL.Fsubstring method) __getstate__() (pyrosetta.rosetta.basic.TracerPriority method) (pyrosetta.rosetta.utility.simulate_mpi_message_type method) __gt__ (pyrosetta.CD attribute) (pyrosetta.EnergyMethod attribute) (pyrosetta.rosetta.ObjexxFCL.ChunkExponent attribute) (pyrosetta.rosetta.ObjexxFCL.Cstring attribute) (pyrosetta.rosetta.ObjexxFCL.Dimension attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpression attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCon attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCube attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionDiv attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMax attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMin attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMul attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionPow attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionRef attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSquare attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSub attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSum attribute) (pyrosetta.rosetta.ObjexxFCL.DynamicIndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.Fstring attribute) (pyrosetta.rosetta.ObjexxFCL.Fsubstring attribute) (pyrosetta.rosetta.ObjexxFCL.IndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.Observer attribute) (pyrosetta.rosetta.ObjexxFCL.ObserverMulti attribute) (pyrosetta.rosetta.ObjexxFCL.ObserverSingle attribute) (pyrosetta.rosetta.ObjexxFCL.Star attribute) (pyrosetta.rosetta.ObjexxFCL.StaticIndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.byte attribute) (pyrosetta.rosetta.ObjexxFCL.ubyte attribute) (pyrosetta.rosetta.W128_T attribute) (pyrosetta.rosetta.basic.Emitter attribute) (pyrosetta.rosetta.basic.ExecutionResult attribute) (pyrosetta.rosetta.basic.JsonEmitter attribute) (pyrosetta.rosetta.basic.PyTracer attribute) (pyrosetta.rosetta.basic.Report attribute) (pyrosetta.rosetta.basic.Reporter attribute) (pyrosetta.rosetta.basic.Tracer attribute) (pyrosetta.rosetta.basic.TracerManager attribute) (pyrosetta.rosetta.basic.TracerOptions attribute) (pyrosetta.rosetta.basic.TracerPriority attribute) (pyrosetta.rosetta.basic.YamlEmitter attribute) (pyrosetta.rosetta.numeric.MultiDimensionalHistogram attribute) (pyrosetta.rosetta.protocols.LoopRebuild attribute) (pyrosetta.rosetta.protocols.LoopRefine attribute) (pyrosetta.rosetta.utility.CSI_Sequence attribute) (pyrosetta.rosetta.utility.SimulateMPI attribute) (pyrosetta.rosetta.utility.recent_history_queue attribute) (pyrosetta.rosetta.utility.simulate_mpi_message_type attribute) (pyrosetta.rosetta.utility.subset_mapping attribute) __hash__ (pyrosetta.CD attribute) (pyrosetta.EnergyMethod attribute) (pyrosetta.rosetta.ObjexxFCL.ChunkExponent attribute) (pyrosetta.rosetta.ObjexxFCL.Cstring attribute) (pyrosetta.rosetta.ObjexxFCL.Dimension attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpression attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCon attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCube attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionDiv attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMax attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMin attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMul attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionPow attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionRef attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSquare attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSub attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSum attribute) (pyrosetta.rosetta.ObjexxFCL.DynamicIndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.Fstring attribute) (pyrosetta.rosetta.ObjexxFCL.Fsubstring attribute) (pyrosetta.rosetta.ObjexxFCL.IndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.Observer attribute) (pyrosetta.rosetta.ObjexxFCL.ObserverMulti attribute) (pyrosetta.rosetta.ObjexxFCL.ObserverSingle attribute) (pyrosetta.rosetta.ObjexxFCL.Star attribute) (pyrosetta.rosetta.ObjexxFCL.StaticIndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.byte attribute) (pyrosetta.rosetta.ObjexxFCL.ubyte attribute) (pyrosetta.rosetta.W128_T attribute) (pyrosetta.rosetta.basic.Emitter attribute) (pyrosetta.rosetta.basic.ExecutionResult attribute) (pyrosetta.rosetta.basic.JsonEmitter attribute) (pyrosetta.rosetta.basic.PyTracer attribute) (pyrosetta.rosetta.basic.Report attribute) (pyrosetta.rosetta.basic.Reporter attribute) (pyrosetta.rosetta.basic.Tracer attribute) (pyrosetta.rosetta.basic.TracerManager attribute) (pyrosetta.rosetta.basic.TracerOptions attribute) (pyrosetta.rosetta.basic.YamlEmitter attribute) (pyrosetta.rosetta.numeric.MultiDimensionalHistogram attribute) (pyrosetta.rosetta.protocols.LoopRebuild attribute) (pyrosetta.rosetta.protocols.LoopRefine attribute) (pyrosetta.rosetta.utility.CSI_Sequence attribute) (pyrosetta.rosetta.utility.SimulateMPI attribute) (pyrosetta.rosetta.utility.recent_history_queue attribute) (pyrosetta.rosetta.utility.subset_mapping attribute) __hash__() (pyrosetta.rosetta.basic.TracerPriority method) (pyrosetta.rosetta.utility.simulate_mpi_message_type method) __iadd__() (in module pyrosetta.method_bindings.pose) (pyrosetta.rosetta.ObjexxFCL.Cstring method) (pyrosetta.rosetta.ObjexxFCL.Dimension method) (pyrosetta.rosetta.ObjexxFCL.byte method) (pyrosetta.rosetta.ObjexxFCL.ubyte method) __idiv__() (pyrosetta.rosetta.ObjexxFCL.byte method) (pyrosetta.rosetta.ObjexxFCL.Dimension method) (pyrosetta.rosetta.ObjexxFCL.ubyte method) __imul__() (in module pyrosetta.method_bindings.pose) (pyrosetta.rosetta.ObjexxFCL.Dimension method) (pyrosetta.rosetta.ObjexxFCL.byte method) (pyrosetta.rosetta.ObjexxFCL.ubyte method) __init__ (pyrosetta.rosetta.basic.TracerManager attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpression attribute) (pyrosetta.rosetta.ObjexxFCL.IndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.Observer attribute) (pyrosetta.rosetta.ObjexxFCL.ObserverMulti attribute) (pyrosetta.rosetta.ObjexxFCL.ObserverSingle attribute) (pyrosetta.rosetta.utility.SimulateMPI attribute) __init__() (pyrosetta.rosetta.basic.Emitter method) (pyrosetta.rosetta.ObjexxFCL.ChunkExponent method) (pyrosetta.rosetta.ObjexxFCL.Cstring method) (pyrosetta.rosetta.ObjexxFCL.Dimension method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCon method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCube method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionDiv method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMax method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMin method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMul method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionPow method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionRef method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSquare method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSub method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSum method) (pyrosetta.rosetta.ObjexxFCL.DynamicIndexRange method) (pyrosetta.rosetta.ObjexxFCL.Fstring method) (pyrosetta.rosetta.ObjexxFCL.Fsubstring method) (pyrosetta.rosetta.ObjexxFCL.Star method) (pyrosetta.rosetta.ObjexxFCL.StaticIndexRange method) (pyrosetta.rosetta.ObjexxFCL.byte method) (pyrosetta.rosetta.ObjexxFCL.ubyte method) (pyrosetta.rosetta.W128_T method) (pyrosetta.rosetta.basic.ExecutionResult method) (pyrosetta.rosetta.basic.JsonEmitter method) (pyrosetta.rosetta.basic.PyTracer method) (pyrosetta.rosetta.basic.Report method) (pyrosetta.rosetta.basic.Reporter method) (pyrosetta.rosetta.basic.Tracer method) (pyrosetta.rosetta.basic.TracerOptions method) (pyrosetta.rosetta.basic.TracerPriority method) (pyrosetta.rosetta.basic.YamlEmitter method) (pyrosetta.rosetta.numeric.MultiDimensionalHistogram method) (pyrosetta.rosetta.protocols.LoopRebuild method) (pyrosetta.rosetta.protocols.LoopRefine method) (pyrosetta.rosetta.utility.CSI_Sequence method) (pyrosetta.rosetta.utility.recent_history_queue method) (pyrosetta.rosetta.utility.simulate_mpi_message_type method) (pyrosetta.rosetta.utility.subset_mapping method) __init_subclass__() (pyrosetta.CD method) (pyrosetta.EnergyMethod method) (pyrosetta.rosetta.ObjexxFCL.ChunkExponent method) (pyrosetta.rosetta.ObjexxFCL.Cstring method) (pyrosetta.rosetta.ObjexxFCL.Dimension method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpression method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCon method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCube method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionDiv method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMax method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMin method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMul method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionPow method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionRef method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSquare method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSub method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSum method) (pyrosetta.rosetta.ObjexxFCL.DynamicIndexRange method) (pyrosetta.rosetta.ObjexxFCL.Fstring method) (pyrosetta.rosetta.ObjexxFCL.Fsubstring method) (pyrosetta.rosetta.ObjexxFCL.IndexRange method) (pyrosetta.rosetta.ObjexxFCL.Observer method) (pyrosetta.rosetta.ObjexxFCL.ObserverMulti method) (pyrosetta.rosetta.ObjexxFCL.ObserverSingle method) (pyrosetta.rosetta.ObjexxFCL.Star method) (pyrosetta.rosetta.ObjexxFCL.StaticIndexRange method) (pyrosetta.rosetta.ObjexxFCL.byte method) (pyrosetta.rosetta.ObjexxFCL.ubyte method) (pyrosetta.rosetta.W128_T method) (pyrosetta.rosetta.basic.Emitter method) (pyrosetta.rosetta.basic.ExecutionResult method) (pyrosetta.rosetta.basic.JsonEmitter method) (pyrosetta.rosetta.basic.PyTracer method) (pyrosetta.rosetta.basic.Report method) (pyrosetta.rosetta.basic.Reporter method) (pyrosetta.rosetta.basic.Tracer method) (pyrosetta.rosetta.basic.TracerManager method) (pyrosetta.rosetta.basic.TracerOptions method) (pyrosetta.rosetta.basic.TracerPriority method) (pyrosetta.rosetta.basic.YamlEmitter method) (pyrosetta.rosetta.numeric.MultiDimensionalHistogram method) (pyrosetta.rosetta.protocols.LoopRebuild method) (pyrosetta.rosetta.protocols.LoopRefine method) (pyrosetta.rosetta.utility.CSI_Sequence method) (pyrosetta.rosetta.utility.SimulateMPI method) (pyrosetta.rosetta.utility.recent_history_queue method) (pyrosetta.rosetta.utility.simulate_mpi_message_type method) (pyrosetta.rosetta.utility.subset_mapping method) __int__() (pyrosetta.rosetta.basic.TracerPriority method) (pyrosetta.rosetta.utility.simulate_mpi_message_type method) __isub__() (pyrosetta.rosetta.ObjexxFCL.byte method) (pyrosetta.rosetta.ObjexxFCL.Dimension method) (pyrosetta.rosetta.ObjexxFCL.ubyte method)

__iter__() (in module pyrosetta.method_bindings.pose) __le__ (pyrosetta.CD attribute) (pyrosetta.EnergyMethod attribute) (pyrosetta.rosetta.ObjexxFCL.ChunkExponent attribute) (pyrosetta.rosetta.ObjexxFCL.Cstring attribute) (pyrosetta.rosetta.ObjexxFCL.Dimension attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpression attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCon attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCube attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionDiv attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMax attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMin attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMul attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionPow attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionRef attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSquare attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSub attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSum attribute) (pyrosetta.rosetta.ObjexxFCL.DynamicIndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.Fstring attribute) (pyrosetta.rosetta.ObjexxFCL.Fsubstring attribute) (pyrosetta.rosetta.ObjexxFCL.IndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.Observer attribute) (pyrosetta.rosetta.ObjexxFCL.ObserverMulti attribute) (pyrosetta.rosetta.ObjexxFCL.ObserverSingle attribute) (pyrosetta.rosetta.ObjexxFCL.Star attribute) (pyrosetta.rosetta.ObjexxFCL.StaticIndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.byte attribute) (pyrosetta.rosetta.ObjexxFCL.ubyte attribute) (pyrosetta.rosetta.W128_T attribute) (pyrosetta.rosetta.basic.Emitter attribute) (pyrosetta.rosetta.basic.ExecutionResult attribute) (pyrosetta.rosetta.basic.JsonEmitter attribute) (pyrosetta.rosetta.basic.PyTracer attribute) (pyrosetta.rosetta.basic.Report attribute) (pyrosetta.rosetta.basic.Reporter attribute) (pyrosetta.rosetta.basic.Tracer attribute) (pyrosetta.rosetta.basic.TracerManager attribute) (pyrosetta.rosetta.basic.TracerOptions attribute) (pyrosetta.rosetta.basic.TracerPriority attribute) (pyrosetta.rosetta.basic.YamlEmitter attribute) (pyrosetta.rosetta.numeric.MultiDimensionalHistogram attribute) (pyrosetta.rosetta.protocols.LoopRebuild attribute) (pyrosetta.rosetta.protocols.LoopRefine attribute) (pyrosetta.rosetta.utility.CSI_Sequence attribute) (pyrosetta.rosetta.utility.SimulateMPI attribute) (pyrosetta.rosetta.utility.recent_history_queue attribute) (pyrosetta.rosetta.utility.simulate_mpi_message_type attribute) (pyrosetta.rosetta.utility.subset_mapping attribute) __len__() (in module pyrosetta.method_bindings.pose) __lt__ (pyrosetta.CD attribute) (pyrosetta.EnergyMethod attribute) (pyrosetta.rosetta.ObjexxFCL.ChunkExponent attribute) (pyrosetta.rosetta.ObjexxFCL.Cstring attribute) (pyrosetta.rosetta.ObjexxFCL.Dimension attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpression attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCon attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCube attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionDiv attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMax attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMin attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMul attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionPow attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionRef attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSquare attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSub attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSum attribute) (pyrosetta.rosetta.ObjexxFCL.DynamicIndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.Fstring attribute) (pyrosetta.rosetta.ObjexxFCL.Fsubstring attribute) (pyrosetta.rosetta.ObjexxFCL.IndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.Observer attribute) (pyrosetta.rosetta.ObjexxFCL.ObserverMulti attribute) (pyrosetta.rosetta.ObjexxFCL.ObserverSingle attribute) (pyrosetta.rosetta.ObjexxFCL.Star attribute) (pyrosetta.rosetta.ObjexxFCL.StaticIndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.byte attribute) (pyrosetta.rosetta.ObjexxFCL.ubyte attribute) (pyrosetta.rosetta.W128_T attribute) (pyrosetta.rosetta.basic.Emitter attribute) (pyrosetta.rosetta.basic.ExecutionResult attribute) (pyrosetta.rosetta.basic.JsonEmitter attribute) (pyrosetta.rosetta.basic.PyTracer attribute) (pyrosetta.rosetta.basic.Report attribute) (pyrosetta.rosetta.basic.Reporter attribute) (pyrosetta.rosetta.basic.Tracer attribute) (pyrosetta.rosetta.basic.TracerManager attribute) (pyrosetta.rosetta.basic.TracerOptions attribute) (pyrosetta.rosetta.basic.TracerPriority attribute) (pyrosetta.rosetta.basic.YamlEmitter attribute) (pyrosetta.rosetta.numeric.MultiDimensionalHistogram attribute) (pyrosetta.rosetta.protocols.LoopRebuild attribute) (pyrosetta.rosetta.protocols.LoopRefine attribute) (pyrosetta.rosetta.utility.CSI_Sequence attribute) (pyrosetta.rosetta.utility.SimulateMPI attribute) (pyrosetta.rosetta.utility.recent_history_queue attribute) (pyrosetta.rosetta.utility.simulate_mpi_message_type attribute) (pyrosetta.rosetta.utility.subset_mapping attribute) __ne__ (pyrosetta.CD attribute) (pyrosetta.EnergyMethod attribute) (pyrosetta.rosetta.ObjexxFCL.ChunkExponent attribute) (pyrosetta.rosetta.ObjexxFCL.Cstring attribute) (pyrosetta.rosetta.ObjexxFCL.Dimension attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpression attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCon attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCube attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionDiv attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMax attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMin attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMul attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionPow attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionRef attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSquare attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSub attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSum attribute) (pyrosetta.rosetta.ObjexxFCL.DynamicIndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.Fstring attribute) (pyrosetta.rosetta.ObjexxFCL.Fsubstring attribute) (pyrosetta.rosetta.ObjexxFCL.IndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.Observer attribute) (pyrosetta.rosetta.ObjexxFCL.ObserverMulti attribute) (pyrosetta.rosetta.ObjexxFCL.ObserverSingle attribute) (pyrosetta.rosetta.ObjexxFCL.Star attribute) (pyrosetta.rosetta.ObjexxFCL.StaticIndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.byte attribute) (pyrosetta.rosetta.ObjexxFCL.ubyte attribute) (pyrosetta.rosetta.W128_T attribute) (pyrosetta.rosetta.basic.Emitter attribute) (pyrosetta.rosetta.basic.ExecutionResult attribute) (pyrosetta.rosetta.basic.JsonEmitter attribute) (pyrosetta.rosetta.basic.PyTracer attribute) (pyrosetta.rosetta.basic.Report attribute) (pyrosetta.rosetta.basic.Reporter attribute) (pyrosetta.rosetta.basic.Tracer attribute) (pyrosetta.rosetta.basic.TracerManager attribute) (pyrosetta.rosetta.basic.TracerOptions attribute) (pyrosetta.rosetta.basic.YamlEmitter attribute) (pyrosetta.rosetta.numeric.MultiDimensionalHistogram attribute) (pyrosetta.rosetta.protocols.LoopRebuild attribute) (pyrosetta.rosetta.protocols.LoopRefine attribute) (pyrosetta.rosetta.utility.CSI_Sequence attribute) (pyrosetta.rosetta.utility.SimulateMPI attribute) (pyrosetta.rosetta.utility.recent_history_queue attribute) (pyrosetta.rosetta.utility.subset_mapping attribute) __ne__() (pyrosetta.rosetta.basic.TracerPriority method) (pyrosetta.rosetta.utility.simulate_mpi_message_type method) __new__() (pyrosetta.CD method) (pyrosetta.EnergyMethod method) (pyrosetta.rosetta.ObjexxFCL.ChunkExponent method) (pyrosetta.rosetta.ObjexxFCL.Cstring method) (pyrosetta.rosetta.ObjexxFCL.Dimension method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpression method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCon method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCube method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionDiv method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMax method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMin method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMul method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionPow method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionRef method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSquare method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSub method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSum method) (pyrosetta.rosetta.ObjexxFCL.DynamicIndexRange method) (pyrosetta.rosetta.ObjexxFCL.Fstring method) (pyrosetta.rosetta.ObjexxFCL.Fsubstring method) (pyrosetta.rosetta.ObjexxFCL.IndexRange method) (pyrosetta.rosetta.ObjexxFCL.Observer method) (pyrosetta.rosetta.ObjexxFCL.ObserverMulti method) (pyrosetta.rosetta.ObjexxFCL.ObserverSingle method) (pyrosetta.rosetta.ObjexxFCL.Star method) (pyrosetta.rosetta.ObjexxFCL.StaticIndexRange method) (pyrosetta.rosetta.ObjexxFCL.byte method) (pyrosetta.rosetta.ObjexxFCL.ubyte method) (pyrosetta.rosetta.W128_T method) (pyrosetta.rosetta.basic.Emitter method) (pyrosetta.rosetta.basic.ExecutionResult method) (pyrosetta.rosetta.basic.JsonEmitter method) (pyrosetta.rosetta.basic.PyTracer method) (pyrosetta.rosetta.basic.Report method) (pyrosetta.rosetta.basic.Reporter method) (pyrosetta.rosetta.basic.Tracer method) (pyrosetta.rosetta.basic.TracerManager method) (pyrosetta.rosetta.basic.TracerOptions method) (pyrosetta.rosetta.basic.TracerPriority method) (pyrosetta.rosetta.basic.YamlEmitter method) (pyrosetta.rosetta.numeric.MultiDimensionalHistogram method) (pyrosetta.rosetta.protocols.LoopRebuild method) (pyrosetta.rosetta.protocols.LoopRefine method) (pyrosetta.rosetta.utility.CSI_Sequence method) (pyrosetta.rosetta.utility.SimulateMPI method) (pyrosetta.rosetta.utility.recent_history_queue method) (pyrosetta.rosetta.utility.simulate_mpi_message_type method) (pyrosetta.rosetta.utility.subset_mapping method) __reduce__() (pyrosetta.CD method) (pyrosetta.EnergyMethod method) (pyrosetta.rosetta.ObjexxFCL.ChunkExponent method) (pyrosetta.rosetta.ObjexxFCL.Cstring method) (pyrosetta.rosetta.ObjexxFCL.Dimension method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpression method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCon method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCube method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionDiv method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMax method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMin method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMul method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionPow method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionRef method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSquare method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSub method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSum method) (pyrosetta.rosetta.ObjexxFCL.DynamicIndexRange method) (pyrosetta.rosetta.ObjexxFCL.Fstring method) (pyrosetta.rosetta.ObjexxFCL.Fsubstring method) (pyrosetta.rosetta.ObjexxFCL.IndexRange method) (pyrosetta.rosetta.ObjexxFCL.Observer method) (pyrosetta.rosetta.ObjexxFCL.ObserverMulti method) (pyrosetta.rosetta.ObjexxFCL.ObserverSingle method) (pyrosetta.rosetta.ObjexxFCL.Star method) (pyrosetta.rosetta.ObjexxFCL.StaticIndexRange method) (pyrosetta.rosetta.ObjexxFCL.byte method) (pyrosetta.rosetta.ObjexxFCL.ubyte method) (pyrosetta.rosetta.W128_T method) (pyrosetta.rosetta.basic.Emitter method) (pyrosetta.rosetta.basic.ExecutionResult method) (pyrosetta.rosetta.basic.JsonEmitter method) (pyrosetta.rosetta.basic.PyTracer method) (pyrosetta.rosetta.basic.Report method) (pyrosetta.rosetta.basic.Reporter method) (pyrosetta.rosetta.basic.Tracer method) (pyrosetta.rosetta.basic.TracerManager method) (pyrosetta.rosetta.basic.TracerOptions method) (pyrosetta.rosetta.basic.TracerPriority method) (pyrosetta.rosetta.basic.YamlEmitter method) (pyrosetta.rosetta.numeric.MultiDimensionalHistogram method) (pyrosetta.rosetta.protocols.LoopRebuild method) (pyrosetta.rosetta.protocols.LoopRefine method) (pyrosetta.rosetta.utility.CSI_Sequence method) (pyrosetta.rosetta.utility.SimulateMPI method) (pyrosetta.rosetta.utility.recent_history_queue method) (pyrosetta.rosetta.utility.simulate_mpi_message_type method) (pyrosetta.rosetta.utility.subset_mapping method) __reduce_ex__() (pyrosetta.CD method) (pyrosetta.EnergyMethod method) (pyrosetta.rosetta.ObjexxFCL.ChunkExponent method) (pyrosetta.rosetta.ObjexxFCL.Cstring method) (pyrosetta.rosetta.ObjexxFCL.Dimension method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpression method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCon method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCube method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionDiv method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMax method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMin method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMul method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionPow method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionRef method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSquare method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSub method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSum method) (pyrosetta.rosetta.ObjexxFCL.DynamicIndexRange method) (pyrosetta.rosetta.ObjexxFCL.Fstring method) (pyrosetta.rosetta.ObjexxFCL.Fsubstring method) (pyrosetta.rosetta.ObjexxFCL.IndexRange method) (pyrosetta.rosetta.ObjexxFCL.Observer method) (pyrosetta.rosetta.ObjexxFCL.ObserverMulti method) (pyrosetta.rosetta.ObjexxFCL.ObserverSingle method) (pyrosetta.rosetta.ObjexxFCL.Star method) (pyrosetta.rosetta.ObjexxFCL.StaticIndexRange method) (pyrosetta.rosetta.ObjexxFCL.byte method) (pyrosetta.rosetta.ObjexxFCL.ubyte method) (pyrosetta.rosetta.W128_T method) (pyrosetta.rosetta.basic.Emitter method) (pyrosetta.rosetta.basic.ExecutionResult method) (pyrosetta.rosetta.basic.JsonEmitter method) (pyrosetta.rosetta.basic.PyTracer method) (pyrosetta.rosetta.basic.Report method) (pyrosetta.rosetta.basic.Reporter method) (pyrosetta.rosetta.basic.Tracer method) (pyrosetta.rosetta.basic.TracerManager method) (pyrosetta.rosetta.basic.TracerOptions method) (pyrosetta.rosetta.basic.TracerPriority method) (pyrosetta.rosetta.basic.YamlEmitter method) (pyrosetta.rosetta.numeric.MultiDimensionalHistogram method) (pyrosetta.rosetta.protocols.LoopRebuild method) (pyrosetta.rosetta.protocols.LoopRefine method) (pyrosetta.rosetta.utility.CSI_Sequence method) (pyrosetta.rosetta.utility.SimulateMPI method) (pyrosetta.rosetta.utility.recent_history_queue method) (pyrosetta.rosetta.utility.simulate_mpi_message_type method) (pyrosetta.rosetta.utility.subset_mapping method) __repr__ (pyrosetta.EnergyMethod attribute) (pyrosetta.rosetta.ObjexxFCL.ChunkExponent attribute) (pyrosetta.rosetta.ObjexxFCL.Cstring attribute) (pyrosetta.rosetta.ObjexxFCL.Dimension attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpression attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCon attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCube attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionDiv attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMax attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMin attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMul attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionPow attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionRef attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSquare attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSub attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSum attribute) (pyrosetta.rosetta.ObjexxFCL.DynamicIndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.Fstring attribute) (pyrosetta.rosetta.ObjexxFCL.Fsubstring attribute) (pyrosetta.rosetta.ObjexxFCL.IndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.Observer attribute) (pyrosetta.rosetta.ObjexxFCL.ObserverMulti attribute) (pyrosetta.rosetta.ObjexxFCL.ObserverSingle attribute) (pyrosetta.rosetta.ObjexxFCL.Star attribute) (pyrosetta.rosetta.ObjexxFCL.StaticIndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.byte attribute) (pyrosetta.rosetta.ObjexxFCL.ubyte attribute) (pyrosetta.rosetta.W128_T attribute) (pyrosetta.rosetta.basic.Emitter attribute) (pyrosetta.rosetta.basic.ExecutionResult attribute) (pyrosetta.rosetta.basic.JsonEmitter attribute) (pyrosetta.rosetta.basic.PyTracer attribute) (pyrosetta.rosetta.basic.Report attribute) (pyrosetta.rosetta.basic.Reporter attribute) (pyrosetta.rosetta.basic.Tracer attribute) (pyrosetta.rosetta.basic.TracerManager attribute) (pyrosetta.rosetta.basic.TracerOptions attribute) (pyrosetta.rosetta.basic.YamlEmitter attribute) (pyrosetta.rosetta.numeric.MultiDimensionalHistogram attribute) (pyrosetta.rosetta.protocols.LoopRebuild attribute) (pyrosetta.rosetta.protocols.LoopRefine attribute) (pyrosetta.rosetta.utility.CSI_Sequence attribute) (pyrosetta.rosetta.utility.SimulateMPI attribute) (pyrosetta.rosetta.utility.recent_history_queue attribute) (pyrosetta.rosetta.utility.subset_mapping attribute) __repr__() (pyrosetta.rosetta.basic.TracerPriority method) (pyrosetta.rosetta.utility.simulate_mpi_message_type method) __setattr__ (pyrosetta.CD attribute) (pyrosetta.EnergyMethod attribute) (pyrosetta.rosetta.ObjexxFCL.ChunkExponent attribute) (pyrosetta.rosetta.ObjexxFCL.Cstring attribute) (pyrosetta.rosetta.ObjexxFCL.Dimension attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpression attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCon attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCube attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionDiv attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMax attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMin attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMul attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionPow attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionRef attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSquare attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSub attribute) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSum attribute) (pyrosetta.rosetta.ObjexxFCL.DynamicIndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.Fstring attribute) (pyrosetta.rosetta.ObjexxFCL.Fsubstring attribute) (pyrosetta.rosetta.ObjexxFCL.IndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.Observer attribute) (pyrosetta.rosetta.ObjexxFCL.ObserverMulti attribute) (pyrosetta.rosetta.ObjexxFCL.ObserverSingle attribute) (pyrosetta.rosetta.ObjexxFCL.Star attribute) (pyrosetta.rosetta.ObjexxFCL.StaticIndexRange attribute) (pyrosetta.rosetta.ObjexxFCL.byte attribute) (pyrosetta.rosetta.ObjexxFCL.ubyte attribute) (pyrosetta.rosetta.W128_T attribute) (pyrosetta.rosetta.basic.Emitter attribute) (pyrosetta.rosetta.basic.ExecutionResult attribute) (pyrosetta.rosetta.basic.JsonEmitter attribute) (pyrosetta.rosetta.basic.PyTracer attribute) (pyrosetta.rosetta.basic.Report attribute) (pyrosetta.rosetta.basic.Reporter attribute) (pyrosetta.rosetta.basic.Tracer attribute) (pyrosetta.rosetta.basic.TracerManager attribute) (pyrosetta.rosetta.basic.TracerOptions attribute) (pyrosetta.rosetta.basic.TracerPriority attribute) (pyrosetta.rosetta.basic.YamlEmitter attribute) (pyrosetta.rosetta.numeric.MultiDimensionalHistogram attribute) (pyrosetta.rosetta.protocols.LoopRebuild attribute) (pyrosetta.rosetta.protocols.LoopRefine attribute) (pyrosetta.rosetta.utility.CSI_Sequence attribute) (pyrosetta.rosetta.utility.SimulateMPI attribute) (pyrosetta.rosetta.utility.recent_history_queue attribute) (pyrosetta.rosetta.utility.simulate_mpi_message_type attribute) (pyrosetta.rosetta.utility.subset_mapping attribute) __setstate__() (pyrosetta.rosetta.basic.TracerPriority method) (pyrosetta.rosetta.utility.simulate_mpi_message_type method) __sizeof__() (pyrosetta.CD method) (pyrosetta.EnergyMethod method) (pyrosetta.rosetta.ObjexxFCL.ChunkExponent method) (pyrosetta.rosetta.ObjexxFCL.Cstring method) (pyrosetta.rosetta.ObjexxFCL.Dimension method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpression method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCon method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCube method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionDiv method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMax method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMin method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMul method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionPow method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionRef method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSquare method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSub method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSum method) (pyrosetta.rosetta.ObjexxFCL.DynamicIndexRange method) (pyrosetta.rosetta.ObjexxFCL.Fstring method) (pyrosetta.rosetta.ObjexxFCL.Fsubstring method) (pyrosetta.rosetta.ObjexxFCL.IndexRange method) (pyrosetta.rosetta.ObjexxFCL.Observer method) (pyrosetta.rosetta.ObjexxFCL.ObserverMulti method) (pyrosetta.rosetta.ObjexxFCL.ObserverSingle method) (pyrosetta.rosetta.ObjexxFCL.Star method) (pyrosetta.rosetta.ObjexxFCL.StaticIndexRange method) (pyrosetta.rosetta.ObjexxFCL.byte method) (pyrosetta.rosetta.ObjexxFCL.ubyte method) (pyrosetta.rosetta.W128_T method) (pyrosetta.rosetta.basic.Emitter method) (pyrosetta.rosetta.basic.ExecutionResult method) (pyrosetta.rosetta.basic.JsonEmitter method) (pyrosetta.rosetta.basic.PyTracer method) (pyrosetta.rosetta.basic.Report method) (pyrosetta.rosetta.basic.Reporter method) (pyrosetta.rosetta.basic.Tracer method) (pyrosetta.rosetta.basic.TracerManager method) (pyrosetta.rosetta.basic.TracerOptions method) (pyrosetta.rosetta.basic.TracerPriority method) (pyrosetta.rosetta.basic.YamlEmitter method) (pyrosetta.rosetta.numeric.MultiDimensionalHistogram method) (pyrosetta.rosetta.protocols.LoopRebuild method) (pyrosetta.rosetta.protocols.LoopRefine method) (pyrosetta.rosetta.utility.CSI_Sequence method) (pyrosetta.rosetta.utility.SimulateMPI method) (pyrosetta.rosetta.utility.recent_history_queue method) (pyrosetta.rosetta.utility.simulate_mpi_message_type method) (pyrosetta.rosetta.utility.subset_mapping method) __str__ (pyrosetta.CD attribute) (pyrosetta.EnergyMethod attribute) (pyrosetta.rosetta.ObjexxFCL.ChunkExponent attribute) (pyrosetta.rosetta.ObjexxFCL.Observer attribute) (pyrosetta.rosetta.ObjexxFCL.ObserverMulti attribute) (pyrosetta.rosetta.ObjexxFCL.ObserverSingle attribute) (pyrosetta.rosetta.ObjexxFCL.Star attribute) (pyrosetta.rosetta.ObjexxFCL.byte attribute) (pyrosetta.rosetta.ObjexxFCL.ubyte attribute) (pyrosetta.rosetta.W128_T attribute) (pyrosetta.rosetta.basic.Emitter attribute) (pyrosetta.rosetta.basic.ExecutionResult attribute) (pyrosetta.rosetta.basic.JsonEmitter attribute) (pyrosetta.rosetta.basic.PyTracer attribute) (pyrosetta.rosetta.basic.Report attribute) (pyrosetta.rosetta.basic.Reporter attribute) (pyrosetta.rosetta.basic.Tracer attribute) (pyrosetta.rosetta.basic.TracerManager attribute) (pyrosetta.rosetta.basic.TracerOptions attribute) (pyrosetta.rosetta.basic.TracerPriority attribute) (pyrosetta.rosetta.basic.YamlEmitter attribute) (pyrosetta.rosetta.protocols.LoopRebuild attribute) (pyrosetta.rosetta.protocols.LoopRefine attribute) (pyrosetta.rosetta.utility.SimulateMPI attribute) (pyrosetta.rosetta.utility.recent_history_queue attribute) (pyrosetta.rosetta.utility.simulate_mpi_message_type attribute) (pyrosetta.rosetta.utility.subset_mapping attribute) __str__() (pyrosetta.rosetta.numeric.MultiDimensionalHistogram method) (pyrosetta.rosetta.ObjexxFCL.Cstring method) (pyrosetta.rosetta.ObjexxFCL.Dimension method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpression method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCon method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCube method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionDiv method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMax method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMin method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMul method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionPow method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionRef method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSquare method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSub method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSum method) (pyrosetta.rosetta.ObjexxFCL.DynamicIndexRange method) (pyrosetta.rosetta.ObjexxFCL.Fstring method) (pyrosetta.rosetta.ObjexxFCL.Fsubstring method) (pyrosetta.rosetta.ObjexxFCL.IndexRange method) (pyrosetta.rosetta.ObjexxFCL.StaticIndexRange method) (pyrosetta.rosetta.utility.CSI_Sequence method) __sub__() (pyrosetta.rosetta.ObjexxFCL.byte method) (pyrosetta.rosetta.ObjexxFCL.ubyte method) __subclasshook__() (pyrosetta.CD method) (pyrosetta.EnergyMethod method) (pyrosetta.rosetta.ObjexxFCL.ChunkExponent method) (pyrosetta.rosetta.ObjexxFCL.Cstring method) (pyrosetta.rosetta.ObjexxFCL.Dimension method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpression method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCon method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCube method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionDiv method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMax method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMin method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMul method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionPow method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionRef method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSquare method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSub method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSum method) (pyrosetta.rosetta.ObjexxFCL.DynamicIndexRange method) (pyrosetta.rosetta.ObjexxFCL.Fstring method) (pyrosetta.rosetta.ObjexxFCL.Fsubstring method) (pyrosetta.rosetta.ObjexxFCL.IndexRange method) (pyrosetta.rosetta.ObjexxFCL.Observer method) (pyrosetta.rosetta.ObjexxFCL.ObserverMulti method) (pyrosetta.rosetta.ObjexxFCL.ObserverSingle method) (pyrosetta.rosetta.ObjexxFCL.Star method) (pyrosetta.rosetta.ObjexxFCL.StaticIndexRange method) (pyrosetta.rosetta.ObjexxFCL.byte method) (pyrosetta.rosetta.ObjexxFCL.ubyte method) (pyrosetta.rosetta.W128_T method) (pyrosetta.rosetta.basic.Emitter method) (pyrosetta.rosetta.basic.ExecutionResult method) (pyrosetta.rosetta.basic.JsonEmitter method) (pyrosetta.rosetta.basic.PyTracer method) (pyrosetta.rosetta.basic.Report method) (pyrosetta.rosetta.basic.Reporter method) (pyrosetta.rosetta.basic.Tracer method) (pyrosetta.rosetta.basic.TracerManager method) (pyrosetta.rosetta.basic.TracerOptions method) (pyrosetta.rosetta.basic.TracerPriority method) (pyrosetta.rosetta.basic.YamlEmitter method) (pyrosetta.rosetta.numeric.MultiDimensionalHistogram method) (pyrosetta.rosetta.protocols.LoopRebuild method) (pyrosetta.rosetta.protocols.LoopRefine method) (pyrosetta.rosetta.utility.CSI_Sequence method) (pyrosetta.rosetta.utility.SimulateMPI method) (pyrosetta.rosetta.utility.recent_history_queue method) (pyrosetta.rosetta.utility.simulate_mpi_message_type method) (pyrosetta.rosetta.utility.subset_mapping method) __weakref__ (pyrosetta.CD attribute) (pyrosetta.EnergyMethod attribute) _M_write() (pyrosetta.rosetta.basic.PyTracer method) (pyrosetta.rosetta.basic.Tracer method) _notebook_logging_callback() (in module pyrosetta.logging_support) _rosetta_database_from_env() (in module pyrosetta)