rosetta.core.pose.symmetry
index
(built-in)

Bindings for core::pose::symmetry namespace

 
Functions
       
extract_asymmetric_unit(...) method of builtins.PyCapsule instance
extract_asymmetric_unit(*args, **kwargs)
Overloaded function.
 
1. extract_asymmetric_unit(pose_in : rosetta.core.pose.Pose, pose_out : rosetta.core.pose.Pose) -> NoneType
 
extract the asu from a pose... unlike previous function symmetric clones are thrown out
 
2. extract_asymmetric_unit(pose_in : rosetta.core.pose.Pose, pose_out : rosetta.core.pose.Pose, with_virtual_atoms : bool) -> NoneType
 
extract the asu from a pose... unlike previous function symmetric clones are thrown out
extract_asymmetric_unit_pdb_info(...) method of builtins.PyCapsule instance
extract_asymmetric_unit_pdb_info(pose : rosetta.core.pose.Pose, pdb_info_src : rosetta.core.pose.PDBInfo, pdb_info_target : rosetta.core.pose.PDBInfo) -> NoneType
find_new_symmetric_jump_residues(...) method of builtins.PyCapsule instance
find_new_symmetric_jump_residues(pose : rosetta.core.pose.Pose) -> NoneType
find_symmetric_basejump_anchor(...) method of builtins.PyCapsule instance
find_symmetric_basejump_anchor(pose : rosetta.core.pose.Pose) -> int
get_asymmetric_pose_copy_from_symmetric_pose(...) method of builtins.PyCapsule instance
get_asymmetric_pose_copy_from_symmetric_pose(pose : rosetta.core.pose.Pose) -> rosetta.core.pose.Pose
get_buildingblock_and_neighbor_subs(...) method of builtins.PyCapsule instance
get_buildingblock_and_neighbor_subs(pose_in : rosetta.core.pose.Pose, intra_subs : rosetta.utility.vector1_unsigned_long) -> rosetta.core.pose.Pose
get_component_lower_bound(...) method of builtins.PyCapsule instance
get_component_lower_bound(pose : rosetta.core.pose.Pose, c : str) -> int
get_component_of_residue(...) method of builtins.PyCapsule instance
get_component_of_residue(pose : rosetta.core.pose.Pose, ir : int) -> str
get_component_upper_bound(...) method of builtins.PyCapsule instance
get_component_upper_bound(pose : rosetta.core.pose.Pose, c : str) -> int
get_full_intracomponent_and_neighbor_resis(...) method of builtins.PyCapsule instance
get_full_intracomponent_and_neighbor_resis(*args, **kwargs)
Overloaded function.
 
1. get_full_intracomponent_and_neighbor_resis(pose : rosetta.core.pose.Pose, sym_dof_name : str) -> rosetta.utility.vector1_unsigned_long
 
2. get_full_intracomponent_and_neighbor_resis(pose : rosetta.core.pose.Pose, sym_dof_name : str, contact_dist : float) -> rosetta.utility.vector1_unsigned_long
get_full_intracomponent_and_neighbor_subpose(...) method of builtins.PyCapsule instance
get_full_intracomponent_and_neighbor_subpose(*args, **kwargs)
Overloaded function.
 
1. get_full_intracomponent_and_neighbor_subpose(pose : rosetta.core.pose.Pose, sym_dof_name : str) -> rosetta.core.pose.Pose
 
2. get_full_intracomponent_and_neighbor_subpose(pose : rosetta.core.pose.Pose, sym_dof_name : str, contact_dist : float) -> rosetta.core.pose.Pose
get_full_intracomponent_and_neighbor_subs(...) method of builtins.PyCapsule instance
get_full_intracomponent_and_neighbor_subs(*args, **kwargs)
Overloaded function.
 
1. get_full_intracomponent_and_neighbor_subs(pose : rosetta.core.pose.Pose, sym_dof_name : str) -> rosetta.utility.vector1_std_string
 
2. get_full_intracomponent_and_neighbor_subs(pose : rosetta.core.pose.Pose, sym_dof_name : str, contact_dist : float) -> rosetta.utility.vector1_std_string
get_full_intracomponent_neighbor_resis(...) method of builtins.PyCapsule instance
get_full_intracomponent_neighbor_resis(*args, **kwargs)
Overloaded function.
 
1. get_full_intracomponent_neighbor_resis(pose : rosetta.core.pose.Pose, sym_dof_name : str) -> rosetta.utility.vector1_unsigned_long
 
2. get_full_intracomponent_neighbor_resis(pose : rosetta.core.pose.Pose, sym_dof_name : str, contact_dist : float) -> rosetta.utility.vector1_unsigned_long
get_full_intracomponent_neighbor_subpose(...) method of builtins.PyCapsule instance
get_full_intracomponent_neighbor_subpose(*args, **kwargs)
Overloaded function.
 
1. get_full_intracomponent_neighbor_subpose(pose : rosetta.core.pose.Pose, sym_dof_name : str) -> rosetta.core.pose.Pose
 
2. get_full_intracomponent_neighbor_subpose(pose : rosetta.core.pose.Pose, sym_dof_name : str, contact_dist : float) -> rosetta.core.pose.Pose
get_full_intracomponent_neighbor_subs(...) method of builtins.PyCapsule instance
get_full_intracomponent_neighbor_subs(*args, **kwargs)
Overloaded function.
 
1. get_full_intracomponent_neighbor_subs(pose : rosetta.core.pose.Pose, sym_dof_name : str) -> rosetta.utility.vector1_std_string
 
2. get_full_intracomponent_neighbor_subs(pose : rosetta.core.pose.Pose, sym_dof_name : str, contact_dist : float) -> rosetta.utility.vector1_std_string
get_full_intracomponent_resis(...) method of builtins.PyCapsule instance
get_full_intracomponent_resis(pose : rosetta.core.pose.Pose, sym_dof_name : str) -> rosetta.utility.vector1_unsigned_long
get_full_intracomponent_subpose(...) method of builtins.PyCapsule instance
get_full_intracomponent_subpose(pose : rosetta.core.pose.Pose, sym_dof_name : str) -> rosetta.core.pose.Pose
get_full_intracomponent_subs(...) method of builtins.PyCapsule instance
get_full_intracomponent_subs(pose : rosetta.core.pose.Pose, jname : str) -> rosetta.utility.vector1_std_string
get_intracomponent_and_interneighbor_resis(...) method of builtins.PyCapsule instance
get_intracomponent_and_interneighbor_resis(*args, **kwargs)
Overloaded function.
 
1. get_intracomponent_and_interneighbor_resis(pose : rosetta.core.pose.Pose, sym_dof_name : str) -> rosetta.utility.vector1_unsigned_long
 
2. get_intracomponent_and_interneighbor_resis(pose : rosetta.core.pose.Pose, sym_dof_name : str, contact_dist : float) -> rosetta.utility.vector1_unsigned_long
get_intracomponent_and_interneighbor_subpose(...) method of builtins.PyCapsule instance
get_intracomponent_and_interneighbor_subpose(*args, **kwargs)
Overloaded function.
 
1. get_intracomponent_and_interneighbor_subpose(pose : rosetta.core.pose.Pose, sym_dof_name : str) -> rosetta.core.pose.Pose
 
2. get_intracomponent_and_interneighbor_subpose(pose : rosetta.core.pose.Pose, sym_dof_name : str, contact_dist : float) -> rosetta.core.pose.Pose
get_intracomponent_and_interneighbor_subs(...) method of builtins.PyCapsule instance
get_intracomponent_and_interneighbor_subs(*args, **kwargs)
Overloaded function.
 
1. get_intracomponent_and_interneighbor_subs(pose : rosetta.core.pose.Pose, sym_dof_name : str) -> rosetta.utility.vector1_std_string
 
2. get_intracomponent_and_interneighbor_subs(pose : rosetta.core.pose.Pose, sym_dof_name : str, contact_dist : float) -> rosetta.utility.vector1_std_string
get_intracomponent_and_intraneighbor_resis(...) method of builtins.PyCapsule instance
get_intracomponent_and_intraneighbor_resis(*args, **kwargs)
Overloaded function.
 
1. get_intracomponent_and_intraneighbor_resis(pose : rosetta.core.pose.Pose, sym_dof_name : str) -> rosetta.utility.vector1_unsigned_long
 
2. get_intracomponent_and_intraneighbor_resis(pose : rosetta.core.pose.Pose, sym_dof_name : str, contact_dist : float) -> rosetta.utility.vector1_unsigned_long
get_intracomponent_and_intraneighbor_subpose(...) method of builtins.PyCapsule instance
get_intracomponent_and_intraneighbor_subpose(*args, **kwargs)
Overloaded function.
 
1. get_intracomponent_and_intraneighbor_subpose(pose : rosetta.core.pose.Pose, sym_dof_name : str) -> rosetta.core.pose.Pose
 
2. get_intracomponent_and_intraneighbor_subpose(pose : rosetta.core.pose.Pose, sym_dof_name : str, contact_dist : float) -> rosetta.core.pose.Pose
get_intracomponent_and_intraneighbor_subs(...) method of builtins.PyCapsule instance
get_intracomponent_and_intraneighbor_subs(*args, **kwargs)
Overloaded function.
 
1. get_intracomponent_and_intraneighbor_subs(pose : rosetta.core.pose.Pose, sym_dof_name : str) -> rosetta.utility.vector1_std_string
 
2. get_intracomponent_and_intraneighbor_subs(pose : rosetta.core.pose.Pose, sym_dof_name : str, contact_dist : float) -> rosetta.utility.vector1_std_string
get_intracomponent_and_neighbor_resis(...) method of builtins.PyCapsule instance
get_intracomponent_and_neighbor_resis(*args, **kwargs)
Overloaded function.
 
1. get_intracomponent_and_neighbor_resis(pose : rosetta.core.pose.Pose, sym_dof_name : str) -> rosetta.utility.vector1_unsigned_long
 
2. get_intracomponent_and_neighbor_resis(pose : rosetta.core.pose.Pose, sym_dof_name : str, contact_dist : float) -> rosetta.utility.vector1_unsigned_long
get_intracomponent_and_neighbor_subpose(...) method of builtins.PyCapsule instance
get_intracomponent_and_neighbor_subpose(*args, **kwargs)
Overloaded function.
 
1. get_intracomponent_and_neighbor_subpose(pose : rosetta.core.pose.Pose, sym_dof_name : str) -> rosetta.core.pose.Pose
 
2. get_intracomponent_and_neighbor_subpose(pose : rosetta.core.pose.Pose, sym_dof_name : str, contact_dist : float) -> rosetta.core.pose.Pose
get_intracomponent_and_neighbor_subs(...) method of builtins.PyCapsule instance
get_intracomponent_and_neighbor_subs(*args, **kwargs)
Overloaded function.
 
1. get_intracomponent_and_neighbor_subs(pose : rosetta.core.pose.Pose, sym_dof_name : str) -> rosetta.utility.vector1_std_string
 
2. get_intracomponent_and_neighbor_subs(pose : rosetta.core.pose.Pose, sym_dof_name : str, contact_dist : float) -> rosetta.utility.vector1_std_string
get_intracomponent_resis(...) method of builtins.PyCapsule instance
get_intracomponent_resis(*args, **kwargs)
Overloaded function.
 
1. get_intracomponent_resis(pose : rosetta.core.pose.Pose, sym_dof_name : str) -> rosetta.utility.vector1_unsigned_long
 
2. get_intracomponent_resis(pose : rosetta.core.pose.Pose, sym_dof_name : str, contact_dist : float) -> rosetta.utility.vector1_unsigned_long
get_intracomponent_subpose(...) method of builtins.PyCapsule instance
get_intracomponent_subpose(*args, **kwargs)
Overloaded function.
 
1. get_intracomponent_subpose(pose : rosetta.core.pose.Pose, sym_dof_name : str) -> rosetta.core.pose.Pose
 
2. get_intracomponent_subpose(pose : rosetta.core.pose.Pose, sym_dof_name : str, contact_dist : float) -> rosetta.core.pose.Pose
get_intracomponent_subs(...) method of builtins.PyCapsule instance
get_intracomponent_subs(*args, **kwargs)
Overloaded function.
 
1. get_intracomponent_subs(pose : rosetta.core.pose.Pose, sym_dof_name : str) -> rosetta.utility.vector1_std_string
 
2. get_intracomponent_subs(pose : rosetta.core.pose.Pose, sym_dof_name : str, contact_dist : float) -> rosetta.utility.vector1_std_string
get_jump_name_to_components(...) method of builtins.PyCapsule instance
get_jump_name_to_components(pose : rosetta.core.pose.Pose, jname : str) -> rosetta.utility.vector1_char
get_jump_name_to_subunits(...) method of builtins.PyCapsule instance
get_jump_name_to_subunits(pose : rosetta.core.pose.Pose, jname : str) -> rosetta.utility.vector1_unsigned_long
get_neighbor_resis(...) method of builtins.PyCapsule instance
get_neighbor_resis(*args, **kwargs)
Overloaded function.
 
1. get_neighbor_resis(pose : rosetta.core.pose.Pose, sym_dof_name : str) -> rosetta.utility.vector1_unsigned_long
 
2. get_neighbor_resis(pose : rosetta.core.pose.Pose, sym_dof_name : str, contact_dist : float) -> rosetta.utility.vector1_unsigned_long
get_neighbor_subpose(...) method of builtins.PyCapsule instance
get_neighbor_subpose(*args, **kwargs)
Overloaded function.
 
1. get_neighbor_subpose(pose : rosetta.core.pose.Pose, sym_dof_name : str) -> rosetta.core.pose.Pose
 
2. get_neighbor_subpose(pose : rosetta.core.pose.Pose, sym_dof_name : str, contact_dist : float) -> rosetta.core.pose.Pose
get_neighbor_subs(...) method of builtins.PyCapsule instance
get_neighbor_subs(*args, **kwargs)
Overloaded function.
 
1. get_neighbor_subs(pose : rosetta.core.pose.Pose, sym_dof_name : str) -> rosetta.utility.vector1_std_string
 
2. get_neighbor_subs(pose : rosetta.core.pose.Pose, sym_dof_name : str, contact_dist : float) -> rosetta.utility.vector1_std_string
get_resis(...) method of builtins.PyCapsule instance
get_resis(pose : rosetta.core.pose.Pose, subs : rosetta.utility.vector1_std_string) -> rosetta.utility.vector1_unsigned_long
get_resnum_to_subunit_component(...) method of builtins.PyCapsule instance
get_resnum_to_subunit_component(pose : rosetta.core.pose.Pose, resnum : int) -> str
get_subpose(...) method of builtins.PyCapsule instance
get_subpose(pose : rosetta.core.pose.Pose, subs : rosetta.utility.vector1_std_string) -> rosetta.core.pose.Pose
get_subunit_name_to_component(...) method of builtins.PyCapsule instance
get_subunit_name_to_component(pose : rosetta.core.pose.Pose, vname : str) -> str
get_sym_aware_jump_num(...) method of builtins.PyCapsule instance
get_sym_aware_jump_num(pose : rosetta.core.pose.Pose, jump_num : int) -> int
get_symdof_subunits(...) method of builtins.PyCapsule instance
get_symdof_subunits(pose : rosetta.core.pose.Pose, jname : str) -> rosetta.utility.vector1_unsigned_long
get_symm_axis(...) method of builtins.PyCapsule instance
get_symm_axis(pose : rosetta.core.pose.Pose) -> rosetta.numeric.xyzVector_double_t
intracomponent_contact(...) method of builtins.PyCapsule instance
intracomponent_contact(*args, **kwargs)
Overloaded function.
 
1. intracomponent_contact(pose : rosetta.core.pose.Pose, sym_dof_name : str) -> bool
 
2. intracomponent_contact(pose : rosetta.core.pose.Pose, sym_dof_name : str, contact_dist : float) -> bool
is_mirror_symmetric(...) method of builtins.PyCapsule instance
is_mirror_symmetric(pose : rosetta.core.pose.Pose) -> bool
is_multicomponent(...) method of builtins.PyCapsule instance
is_multicomponent(pose : rosetta.core.pose.Pose) -> bool
is_singlecomponent(...) method of builtins.PyCapsule instance
is_singlecomponent(pose : rosetta.core.pose.Pose) -> bool
is_symmetric(...) method of builtins.PyCapsule instance
is_symmetric(*args, **kwargs)
Overloaded function.
 
1. is_symmetric(pose : rosetta.core.pose.Pose) -> bool
 
2. is_symmetric(scorefxn : rosetta.core.scoring.ScoreFunction) -> bool
 
3. is_symmetric(energies : rosetta.core.scoring.Energies) -> bool
jump_num_sym_dof(...) method of builtins.PyCapsule instance
jump_num_sym_dof(pose : rosetta.core.pose.Pose, jnum : int) -> str
make_asymmetric_pose(...) method of builtins.PyCapsule instance
make_asymmetric_pose(pose : rosetta.core.pose.Pose) -> NoneType
make_residue_mask_symmetric(...) method of builtins.PyCapsule instance
make_residue_mask_symmetric(p : rosetta.core.pose.Pose, msk : rosetta.utility.vector1_bool) -> NoneType
make_score_function_consistent_with_symmetric_state_of_pose(...) method of builtins.PyCapsule instance
make_score_function_consistent_with_symmetric_state_of_pose(pose : rosetta.core.pose.Pose, scorefxn : rosetta.core.scoring.ScoreFunction) -> NoneType
make_symmetric_movemap(...) method of builtins.PyCapsule instance
make_symmetric_movemap(pose : rosetta.core.pose.Pose, movemap : rosetta.core.kinematics.MoveMap) -> NoneType
make_symmetric_pdb_info(...) method of builtins.PyCapsule instance
make_symmetric_pdb_info(pose : rosetta.core.pose.Pose, pdb_info_src : rosetta.core.pose.PDBInfo, pdb_info_target : rosetta.core.pose.PDBInfo) -> NoneType
make_symmetric_pose(...) method of builtins.PyCapsule instance
make_symmetric_pose(*args, **kwargs)
Overloaded function.
 
1. make_symmetric_pose(pose : rosetta.core.pose.Pose, symmetry_info : rosetta.core.conformation.symmetry.SymmetryInfo) -> NoneType
 
2. make_symmetric_pose(pose : rosetta.core.pose.Pose, symmdata : rosetta.core.conformation.symmetry.SymmData) -> NoneType
 
3. make_symmetric_pose(pose : rosetta.core.pose.Pose) -> NoneType
 
4. make_symmetric_pose(pose : rosetta.core.pose.Pose, symmdef_file : str) -> NoneType
partition_by_symm_jumps(...) method of builtins.PyCapsule instance
partition_by_symm_jumps(jump_numbers : rosetta.utility.vector1_int, ft : rosetta.core.kinematics.FoldTree, symm_info : rosetta.core.conformation.symmetry.SymmetryInfo, partner1 : ObjexxFCL::FArray1D<bool>) -> NoneType
rotate_anchor_to_x_axis(...) method of builtins.PyCapsule instance
rotate_anchor_to_x_axis(pose : rosetta.core.pose.Pose) -> NoneType
sealed_symmetric_fold_tree(...) method of builtins.PyCapsule instance
sealed_symmetric_fold_tree(pose : rosetta.core.pose.Pose) -> rosetta.core.kinematics.FoldTree
set_asymm_unit_fold_tree(...) method of builtins.PyCapsule instance
set_asymm_unit_fold_tree(p : rosetta.core.pose.Pose, f : rosetta.core.kinematics.FoldTree) -> NoneType
sym_dof_jump_num(...) method of builtins.PyCapsule instance
sym_dof_jump_num(pose : rosetta.core.pose.Pose, jname : str) -> int
sym_dof_names(...) method of builtins.PyCapsule instance
sym_dof_names(pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_std_string
symmetric_components(...) method of builtins.PyCapsule instance
symmetric_components(pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_char
symmetrize_fold_tree(...) method of builtins.PyCapsule instance
symmetrize_fold_tree(p : rosetta.core.pose.Pose, f : rosetta.core.kinematics.FoldTree) -> NoneType
 
Converts an asymmetric foldtree (f) with virtual root into a
           symmetric foldtree compatible with symmetric pose (p)
 
 
 - A symmetric pose
 
 
 - An asymmetric foldtree. This foldtree MUST have a virtual root
 
 
  This function does not require the symm data
symmetry_info(...) method of builtins.PyCapsule instance
symmetry_info(pose : rosetta.core.pose.Pose) -> rosetta.core.conformation.symmetry.SymmetryInfo