rosetta.core.init
index
(built-in)

Bindings for core::init namespace

 
Functions
       
check_deprecated_flags(...) method of builtins.PyCapsule instance
check_deprecated_flags() -> NoneType
 
Check for deprecated flags specified by the user and output error messages if necessary
check_score_function_sanity(...) method of builtins.PyCapsule instance
check_score_function_sanity(*args, **kwargs)
Overloaded function.
 
1. check_score_function_sanity(scorefxn_key : str) -> NoneType
 
Check if a score function is requested with incompatible option flags
 
2. check_score_function_sanity(scorefxn_key : str, warn_only : bool) -> NoneType
 
Check if a score function is requested with incompatible option flags
init(...) method of builtins.PyCapsule instance
init(args : rosetta.utility.vector1_std_string) -> NoneType
 
wrapper for core system Init
init_beta_correction(...) method of builtins.PyCapsule instance
init_beta_correction() -> NoneType
 
Initialize the _most recent_ beta score function (-beta)
init_beta_july15_correction(...) method of builtins.PyCapsule instance
init_beta_july15_correction() -> NoneType
 
Initialize the -beta_july15 score function
init_beta_nov15_correction(...) method of builtins.PyCapsule instance
init_beta_nov15_correction() -> NoneType
 
Initialize the -beta_nov15 score function
init_correct_correction(...) method of builtins.PyCapsule instance
init_correct_correction() -> NoneType
 
Initialize the -correct correction
init_crystal_refinement_correction(...) method of builtins.PyCapsule instance
init_crystal_refinement_correction() -> NoneType
 
Initialize the crystal refinement correction
init_dna_correction(...) method of builtins.PyCapsule instance
init_dna_correction() -> NoneType
 
Apply some DNA-specific mods that are still in testing phase; only if -corrections::newdna present
init_facts_correction(...) method of builtins.PyCapsule instance
init_facts_correction() -> NoneType
 
Initialize the FACTS correction
init_hbond_sp2_correction(...) method of builtins.PyCapsule instance
init_hbond_sp2_correction() -> NoneType
 
Initialize the hbond Sp2 correction
 Deprecated as Talaris2013 becomes default.
init_nonideal_correction(...) method of builtins.PyCapsule instance
init_nonideal_correction() -> NoneType
 
Initialize nonideal bond geometry correction
init_paths(...) method of builtins.PyCapsule instance
init_paths() -> NoneType
 
Setup basic search paths
init_profiling(...) method of builtins.PyCapsule instance
init_profiling() -> NoneType
 
Profiling measures execution performance
init_random_generators(...) method of builtins.PyCapsule instance
init_random_generators(start_seed : int, RGtype : str) -> NoneType
 
Initialize random generator systems (and send debug io to tracer with seed/mode info).
init_random_number_generators(...) method of builtins.PyCapsule instance
init_random_number_generators() -> NoneType
 
Initalize random number generators
init_resources(...) method of builtins.PyCapsule instance
init_resources() -> NoneType
 
Set up system resources
init_restore_score12prime(...) method of builtins.PyCapsule instance
init_restore_score12prime() -> NoneType
 
restore the the score function to the Score12prime version
init_revert_to_pre_talaris_2013_mistake(...) method of builtins.PyCapsule instance
init_revert_to_pre_talaris_2013_mistake() -> NoneType
 
Initialize the "revert to before Talaris2013" mistake
init_score_function_corrections(...) method of builtins.PyCapsule instance
init_score_function_corrections() -> NoneType
 
Initialize the latest and greatest score function parameters
init_shapovalov_lib_fixes_enable_correction(...) method of builtins.PyCapsule instance
init_shapovalov_lib_fixes_enable_correction() -> NoneType
 
Initialize the -shapovalov_lib_fixes_enable correction
init_source_revision(...) method of builtins.PyCapsule instance
init_source_revision() -> NoneType
 
Choose to output source version control information?
init_tracers(...) method of builtins.PyCapsule instance
init_tracers() -> NoneType
 
Tracers control output to std::cout and std::cerr
locate_rosetta_database(...) method of builtins.PyCapsule instance
locate_rosetta_database() -> NoneType
 
Locate rosetta_database
random_delay(...) method of builtins.PyCapsule instance
random_delay() -> NoneType
 
Choose to randomly delay execution to desyncronize parallel execution
revert_to_pre_talaris_2013_defaults(...) method of builtins.PyCapsule instance
revert_to_pre_talaris_2013_defaults() -> NoneType
 
Reset a set of flags to their pre-talaris behavior