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- check_deprecated_flags(...) method of builtins.PyCapsule instance
- check_deprecated_flags() -> NoneType
Check for deprecated flags specified by the user and output error messages if necessary
- check_score_function_sanity(...) method of builtins.PyCapsule instance
- check_score_function_sanity(*args, **kwargs)
Overloaded function.
1. check_score_function_sanity(scorefxn_key : str) -> NoneType
Check if a score function is requested with incompatible option flags
2. check_score_function_sanity(scorefxn_key : str, warn_only : bool) -> NoneType
Check if a score function is requested with incompatible option flags
- init(...) method of builtins.PyCapsule instance
- init(args : rosetta.utility.vector1_std_string) -> NoneType
wrapper for core system Init
- init_beta_correction(...) method of builtins.PyCapsule instance
- init_beta_correction() -> NoneType
Initialize the _most recent_ beta score function (-beta)
- init_beta_july15_correction(...) method of builtins.PyCapsule instance
- init_beta_july15_correction() -> NoneType
Initialize the -beta_july15 score function
- init_beta_nov15_correction(...) method of builtins.PyCapsule instance
- init_beta_nov15_correction() -> NoneType
Initialize the -beta_nov15 score function
- init_correct_correction(...) method of builtins.PyCapsule instance
- init_correct_correction() -> NoneType
Initialize the -correct correction
- init_crystal_refinement_correction(...) method of builtins.PyCapsule instance
- init_crystal_refinement_correction() -> NoneType
Initialize the crystal refinement correction
- init_dna_correction(...) method of builtins.PyCapsule instance
- init_dna_correction() -> NoneType
Apply some DNA-specific mods that are still in testing phase; only if -corrections::newdna present
- init_facts_correction(...) method of builtins.PyCapsule instance
- init_facts_correction() -> NoneType
Initialize the FACTS correction
- init_hbond_sp2_correction(...) method of builtins.PyCapsule instance
- init_hbond_sp2_correction() -> NoneType
Initialize the hbond Sp2 correction
Deprecated as Talaris2013 becomes default.
- init_nonideal_correction(...) method of builtins.PyCapsule instance
- init_nonideal_correction() -> NoneType
Initialize nonideal bond geometry correction
- init_paths(...) method of builtins.PyCapsule instance
- init_paths() -> NoneType
Setup basic search paths
- init_profiling(...) method of builtins.PyCapsule instance
- init_profiling() -> NoneType
Profiling measures execution performance
- init_random_generators(...) method of builtins.PyCapsule instance
- init_random_generators(start_seed : int, RGtype : str) -> NoneType
Initialize random generator systems (and send debug io to tracer with seed/mode info).
- init_random_number_generators(...) method of builtins.PyCapsule instance
- init_random_number_generators() -> NoneType
Initalize random number generators
- init_resources(...) method of builtins.PyCapsule instance
- init_resources() -> NoneType
Set up system resources
- init_restore_score12prime(...) method of builtins.PyCapsule instance
- init_restore_score12prime() -> NoneType
restore the the score function to the Score12prime version
- init_revert_to_pre_talaris_2013_mistake(...) method of builtins.PyCapsule instance
- init_revert_to_pre_talaris_2013_mistake() -> NoneType
Initialize the "revert to before Talaris2013" mistake
- init_score_function_corrections(...) method of builtins.PyCapsule instance
- init_score_function_corrections() -> NoneType
Initialize the latest and greatest score function parameters
- init_shapovalov_lib_fixes_enable_correction(...) method of builtins.PyCapsule instance
- init_shapovalov_lib_fixes_enable_correction() -> NoneType
Initialize the -shapovalov_lib_fixes_enable correction
- init_source_revision(...) method of builtins.PyCapsule instance
- init_source_revision() -> NoneType
Choose to output source version control information?
- init_tracers(...) method of builtins.PyCapsule instance
- init_tracers() -> NoneType
Tracers control output to std::cout and std::cerr
- locate_rosetta_database(...) method of builtins.PyCapsule instance
- locate_rosetta_database() -> NoneType
Locate rosetta_database
- random_delay(...) method of builtins.PyCapsule instance
- random_delay() -> NoneType
Choose to randomly delay execution to desyncronize parallel execution
- revert_to_pre_talaris_2013_defaults(...) method of builtins.PyCapsule instance
- revert_to_pre_talaris_2013_defaults() -> NoneType
Reset a set of flags to their pre-talaris behavior
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