cleaning

pyrosetta.toolbox.cleaning.cleanATOM(pdb_file, out_file='', edit=-4)

Writes all lines in the PDB file <pdb_file> beginning with “ATOM” or “TER” into <out_file> (defaults to <pdb_file>.clean.pdb) note: the third argument, <edit>, if for PDB files not ending in .pdb

example:

cleanATOM(‘1YY9.pdb’)

See also:

Pose Pose.dump_pdb pose_from_file pose_from_rcsb cleanCRYS

pyrosetta.toolbox.cleaning.cleanCRYS(pdb_file, olig=2, out_file='')

Writes a PDB file for a monomer of <pdb_file> if it is a <olig>-mer to <out_file> (defaults to <pdb_file>.mono.pdb) note: this is a simple sequence comparison

example:

cleanCRYS(‘1YY8.pdb’,2)

See also:

Pose Pose.dump_pdb pose_from_file pose_from_rcsb cleanATOM