constraints

Bindings for protocols::forge::constraints namespace

class pyrosetta.rosetta.protocols.forge.constraints.InverseRotamersRCG

Bases: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator

a RemodelConstraintGenerator that creates AmbiguousConstraints for all positions in a remodeled region towards a list of inverse rotamers. For every remodel position/inverse rotamer pair, there will be one MultiConstraint consisting of three CoordinateConstraints. the three coordinate constraints will be between: 1) remodel res N - invrot N coords 2) remodel res Ca - invrot Ca coords 3) remodel res Cb - invrot Cb coords All of these MultiConstraints are combined to form one AmbiguousConstraint. In effect, this RCG should bias the remodel trajectory such that one remodel residue backbone overlays with one inverse rotamer backbone

add_remodel_constraints_to_pose(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator, pose: pyrosetta.rosetta.core.pose.Pose) → None

C++: protocols::forge::remodel::RemodelConstraintGenerator::add_remodel_constraints_to_pose(class core::pose::Pose &) –> void

apply(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator, pose: pyrosetta.rosetta.core.pose.Pose) → None

generates constraints and adds them to the pose

C++: protocols::forge::remodel::RemodelConstraintGenerator::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.forge.constraints.InverseRotamersRCG, : pyrosetta.rosetta.protocols.forge.constraints.InverseRotamersRCG) → pyrosetta.rosetta.protocols.forge.constraints.InverseRotamersRCG

C++: protocols::forge::constraints::InverseRotamersRCG::operator=(const class protocols::forge::constraints::InverseRotamersRCG &) –> class protocols::forge::constraints::InverseRotamersRCG &

attributes_for_remodel_constraint_generator(: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None

C++: protocols::forge::remodel::RemodelConstraintGenerator::attributes_for_remodel_constraint_generator(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) –> void

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) → None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clear_inverse_rotamers(self: pyrosetta.rosetta.protocols.forge.constraints.InverseRotamersRCG) → None

C++: protocols::forge::constraints::InverseRotamersRCG::clear_inverse_rotamers() –> void

clone(self: pyrosetta.rosetta.protocols.forge.constraints.InverseRotamersRCG) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::forge::constraints::InverseRotamersRCG::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

constraints(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator) → pyrosetta.rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t

C++: protocols::forge::remodel::RemodelConstraintGenerator::constraints() const –> const class utility::vector1<class std::shared_ptr<const class core::scoring::constraints::Constraint>, class std::allocator<class std::shared_ptr<const class core::scoring::constraints::Constraint> > > &

create(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.forge.constraints.InverseRotamersRCG) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::forge::constraints::InverseRotamersRCG::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

generate_remodel_constraints(self: pyrosetta.rosetta.protocols.forge.constraints.InverseRotamersRCG, pose: pyrosetta.rosetta.core.pose.Pose) → None

C++: protocols::forge::constraints::InverseRotamersRCG::generate_remodel_constraints(const class core::pose::Pose &) –> void

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) → protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) → str

A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.forge.constraints.InverseRotamersRCG) → str

C++: protocols::forge::constraints::InverseRotamersRCG::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) → str

C++: protocols::moves::Mover::get_type() const –> std::string

id(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator) → str

C++: protocols::forge::remodel::RemodelConstraintGenerator::id() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.list_std_string_std_allocator_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

init(*args, **kwargs)

Overloaded function.

1. init(self: pyrosetta.rosetta.protocols.forge.constraints.InverseRotamersRCG, : pyrosetta.rosetta.core.pose.Pose) -> None
2. init(self: pyrosetta.rosetta.protocols.forge.constraints.InverseRotamersRCG, lstart: int, lstop: int, inverse_rotamers: pyrosetta.rosetta.std.list_std_shared_ptr_const_core_conformation_Residue_std_allocator_std_shared_ptr_const_core_conformation_Residue_t) -> None

initialize with given lstart, lstop, and inverse rotamer residue list

C++: protocols::forge::constraints::InverseRotamersRCG::init(const unsigned long, const unsigned long, const class std::list<class std::shared_ptr<const class core::conformation::Residue>, class std::allocator<class std::shared_ptr<const class core::conformation::Residue> > > &) –> void

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) → float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

lookup_stored_constraints(id: str) → pyrosetta.rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t

C++: protocols::forge::remodel::RemodelConstraintGenerator::lookup_stored_constraints(const class std::basic_string<char> &) –> const class utility::vector1<class std::shared_ptr<const class core::scoring::constraints::Constraint>, class std::allocator<class std::shared_ptr<const class core::scoring::constraints::Constraint> > >

mover_name() → str

C++: protocols::forge::constraints::InverseRotamersRCG::mover_name() –> std::string

name() → str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.forge.constraints.InverseRotamersRCG, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap, filters: pyrosetta.rosetta.std.map_std_string_std_shared_ptr_protocols_filters_Filter_t, movers: pyrosetta.rosetta.std.map_const_std_string_std_shared_ptr_protocols_moves_Mover_t, pose: pyrosetta.rosetta.core.pose.Pose) → None

C++: protocols::forge::constraints::InverseRotamersRCG::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &, const class std::map<class std::basic_string<char>, class std::shared_ptr<class protocols::filters::Filter>, struct std::less<class std::basic_string<char> >, class std::allocator<struct std::pair<const class std::basic_string<char>, class std::shared_ptr<class protocols::filters::Filter> > > > &, const class std::map<const class std::basic_string<char>, class std::shared_ptr<class protocols::moves::Mover>, struct std::less<const class std::basic_string<char> >, class std::allocator<struct std::pair<const class std::basic_string<char>, class std::shared_ptr<class protocols::moves::Mover> > > > &, const class core::pose::Pose &) –> void

provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

C++: protocols::forge::constraints::InverseRotamersRCG::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

register_options() → None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) → bool

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) → bool

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

remove_remodel_constraints_from_pose(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator, pose: pyrosetta.rosetta.core.pose.Pose) → None

C++: protocols::forge::remodel::RemodelConstraintGenerator::remove_remodel_constraints_from_pose(class core::pose::Pose &) const –> void

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) → None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

seqmap(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator) → pyrosetta.rosetta.core.id.SequenceMapping

C++: protocols::forge::remodel::RemodelConstraintGenerator::seqmap() const –> class std::shared_ptr<const class core::id::SequenceMapping>

set_constraint_func(self: pyrosetta.rosetta.protocols.forge.constraints.InverseRotamersRCG, constraint_func: pyrosetta.rosetta.core.scoring.func.Func) → None

C++: protocols::forge::constraints::InverseRotamersRCG::set_constraint_func(class std::shared_ptr<class core::scoring::func::Func>) –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) → None

////////////////////////////end Job Distributor interface////////////////////////////////////////

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) → None

C++: protocols::moves::Mover::set_current_tag(const class std::basic_string<char> &) –> void

set_id(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator, id: str) → None

C++: protocols::forge::remodel::RemodelConstraintGenerator::set_id(const class std::basic_string<char> &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_seqmap(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator, seqmap: pyrosetta.rosetta.core.id.SequenceMapping) → None

C++: protocols::forge::remodel::RemodelConstraintGenerator::set_seqmap(class std::shared_ptr<const class core::id::SequenceMapping>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) → None

C++: protocols::moves::Mover::set_type(const class std::basic_string<char> &) –> void

set_vlb(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator, vlb: pyrosetta.rosetta.std.weak_ptr_protocols_forge_components_VarLengthBuild_t) → None

C++: protocols::forge::remodel::RemodelConstraintGenerator::set_vlb(class std::weak_ptr<class protocols::forge::components::VarLengthBuild>) –> void

show(*args, **kwargs)

Overloaded function.

1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None
2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(class std::basic_ostream<char> &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

C++: protocols::moves::Mover::type() const –> const std::string &

2. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

C++: protocols::moves::Mover::type(const class std::basic_string<char> &) –> void

vlb(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator) → pyrosetta.rosetta.std.weak_ptr_protocols_forge_components_VarLengthBuild_t

C++: protocols::forge::remodel::RemodelConstraintGenerator::vlb() const –> class std::weak_ptr<class protocols::forge::components::VarLengthBuild>

class pyrosetta.rosetta.protocols.forge.constraints.InvrotTreeRCG

Bases: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator

a RemodelConstraintGenerator wrapper that makes the constraints generated by an InvrotTree available in VLB or XML

add_remodel_constraints_to_pose(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator, pose: pyrosetta.rosetta.core.pose.Pose) → None

C++: protocols::forge::remodel::RemodelConstraintGenerator::add_remodel_constraints_to_pose(class core::pose::Pose &) –> void

apply(self: pyrosetta.rosetta.protocols.forge.constraints.InvrotTreeRCG, pose: pyrosetta.rosetta.core.pose.Pose) → None

C++: protocols::forge::constraints::InvrotTreeRCG::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.forge.constraints.InvrotTreeRCG, : pyrosetta.rosetta.protocols.forge.constraints.InvrotTreeRCG) → pyrosetta.rosetta.protocols.forge.constraints.InvrotTreeRCG

C++: protocols::forge::constraints::InvrotTreeRCG::operator=(const class protocols::forge::constraints::InvrotTreeRCG &) –> class protocols::forge::constraints::InvrotTreeRCG &

attributes_for_remodel_constraint_generator(: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None

C++: protocols::forge::remodel::RemodelConstraintGenerator::attributes_for_remodel_constraint_generator(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) –> void

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) → None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.forge.constraints.InvrotTreeRCG) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::forge::constraints::InvrotTreeRCG::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

constraints(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator) → pyrosetta.rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t

C++: protocols::forge::remodel::RemodelConstraintGenerator::constraints() const –> const class utility::vector1<class std::shared_ptr<const class core::scoring::constraints::Constraint>, class std::allocator<class std::shared_ptr<const class core::scoring::constraints::Constraint> > > &

create(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.forge.constraints.InvrotTreeRCG) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::forge::constraints::InvrotTreeRCG::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

generate_remodel_constraints(self: pyrosetta.rosetta.protocols.forge.constraints.InvrotTreeRCG, pose: pyrosetta.rosetta.core.pose.Pose) → None

C++: protocols::forge::constraints::InvrotTreeRCG::generate_remodel_constraints(const class core::pose::Pose &) –> void

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) → protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) → str

A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.forge.constraints.InvrotTreeRCG) → str

C++: protocols::forge::constraints::InvrotTreeRCG::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) → str

C++: protocols::moves::Mover::get_type() const –> std::string

id(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator) → str

C++: protocols::forge::remodel::RemodelConstraintGenerator::id() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.list_std_string_std_allocator_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

init(self: pyrosetta.rosetta.protocols.forge.constraints.InvrotTreeRCG, pose: pyrosetta.rosetta.core.pose.Pose) → None

sets up the allowed sequence positions for enzdes geometric constraints

C++: protocols::forge::constraints::InvrotTreeRCG::init(const class core::pose::Pose &) –> void

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) → float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

lookup_stored_constraints(id: str) → pyrosetta.rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t

C++: protocols::forge::remodel::RemodelConstraintGenerator::lookup_stored_constraints(const class std::basic_string<char> &) –> const class utility::vector1<class std::shared_ptr<const class core::scoring::constraints::Constraint>, class std::allocator<class std::shared_ptr<const class core::scoring::constraints::Constraint> > >

mover_name() → str

C++: protocols::forge::constraints::InvrotTreeRCG::mover_name() –> std::string

name() → str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.forge.constraints.InvrotTreeRCG, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap, filters: pyrosetta.rosetta.std.map_std_string_std_shared_ptr_protocols_filters_Filter_t, movers: pyrosetta.rosetta.std.map_const_std_string_std_shared_ptr_protocols_moves_Mover_t, pose: pyrosetta.rosetta.core.pose.Pose) → None

C++: protocols::forge::constraints::InvrotTreeRCG::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &, const class std::map<class std::basic_string<char>, class std::shared_ptr<class protocols::filters::Filter>, struct std::less<class std::basic_string<char> >, class std::allocator<struct std::pair<const class std::basic_string<char>, class std::shared_ptr<class protocols::filters::Filter> > > > &, const class std::map<const class std::basic_string<char>, class std::shared_ptr<class protocols::moves::Mover>, struct std::less<const class std::basic_string<char> >, class std::allocator<struct std::pair<const class std::basic_string<char>, class std::shared_ptr<class protocols::moves::Mover> > > > &, const class core::pose::Pose &) –> void

provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

C++: protocols::forge::constraints::InvrotTreeRCG::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

register_options() → None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) → bool

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) → bool

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

remove_remodel_constraints_from_pose(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator, pose: pyrosetta.rosetta.core.pose.Pose) → None

C++: protocols::forge::remodel::RemodelConstraintGenerator::remove_remodel_constraints_from_pose(class core::pose::Pose &) const –> void

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) → None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

seqmap(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator) → pyrosetta.rosetta.core.id.SequenceMapping

C++: protocols::forge::remodel::RemodelConstraintGenerator::seqmap() const –> class std::shared_ptr<const class core::id::SequenceMapping>

set_add_ligand_to_pose(self: pyrosetta.rosetta.protocols.forge.constraints.InvrotTreeRCG, add_lig: bool) → None

tells the mover whether it should add the ligand to the pose

C++: protocols::forge::constraints::InvrotTreeRCG::set_add_ligand_to_pose(const bool) –> void

set_cstfile(self: pyrosetta.rosetta.protocols.forge.constraints.InvrotTreeRCG, cstfilename: str) → None

sets up the invrot_tree_ and enzcst_io_ from an enzdes constraint filename.

C++: protocols::forge::constraints::InvrotTreeRCG::set_cstfile(const class std::basic_string<char> &) –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) → None

////////////////////////////end Job Distributor interface////////////////////////////////////////

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) → None

C++: protocols::moves::Mover::set_current_tag(const class std::basic_string<char> &) –> void

set_id(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator, id: str) → None

C++: protocols::forge::remodel::RemodelConstraintGenerator::set_id(const class std::basic_string<char> &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_seqmap(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator, seqmap: pyrosetta.rosetta.core.id.SequenceMapping) → None

C++: protocols::forge::remodel::RemodelConstraintGenerator::set_seqmap(class std::shared_ptr<const class core::id::SequenceMapping>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) → None

C++: protocols::moves::Mover::set_type(const class std::basic_string<char> &) –> void

set_vlb(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator, vlb: pyrosetta.rosetta.std.weak_ptr_protocols_forge_components_VarLengthBuild_t) → None

C++: protocols::forge::remodel::RemodelConstraintGenerator::set_vlb(class std::weak_ptr<class protocols::forge::components::VarLengthBuild>) –> void

show(*args, **kwargs)

Overloaded function.

1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None
2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(class std::basic_ostream<char> &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

C++: protocols::moves::Mover::type() const –> const std::string &

2. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

C++: protocols::moves::Mover::type(const class std::basic_string<char> &) –> void

vlb(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator) → pyrosetta.rosetta.std.weak_ptr_protocols_forge_components_VarLengthBuild_t

C++: protocols::forge::remodel::RemodelConstraintGenerator::vlb() const –> class std::weak_ptr<class protocols::forge::components::VarLengthBuild>