residue_selectors

Bindings for protocols::denovo_design::residue_selectors namespace

class pyrosetta.rosetta.protocols.denovo_design.residue_selectors.NamedSegmentSelector

Bases: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector

Selects residues from a named segment generated by StructureArchitects

apply(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.NamedSegmentSelector, pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_bool

“Apply” function.

Given the pose, generate a vector of bools with entries for every residue in the pose indicating whether each residue is selected (“true”) or not (“false”).

C++: protocols::denovo_design::residue_selectors::NamedSegmentSelector::apply(const class core::pose::Pose &) const –> class utility::vector1<bool, class std::allocator<bool> >

assign(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.NamedSegmentSelector, : pyrosetta.rosetta.protocols.denovo_design.residue_selectors.NamedSegmentSelector) → pyrosetta.rosetta.protocols.denovo_design.residue_selectors.NamedSegmentSelector

C++: protocols::denovo_design::residue_selectors::NamedSegmentSelector::operator=(const class protocols::denovo_design::residue_selectors::NamedSegmentSelector &) –> class protocols::denovo_design::residue_selectors::NamedSegmentSelector &

class_name() → str

Get the mover class name.

C++: protocols::denovo_design::residue_selectors::NamedSegmentSelector::class_name() –> std::string

clone(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.NamedSegmentSelector) → pyrosetta.rosetta.core.select.residue_selector.ResidueSelector

Clone operator.

Copy the current object (creating the copy on the heap) and return an owning pointer to the copy. All ResidueSelectors must implement this.

C++: protocols::denovo_design::residue_selectors::NamedSegmentSelector::clone() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>

get_name(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.NamedSegmentSelector) → str

Get the mover class name.

C++: protocols::denovo_design::residue_selectors::NamedSegmentSelector::get_name() const –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.NamedSegmentSelector, tag: pyrosetta.rosetta.utility.tag.Tag, datamap: pyrosetta.rosetta.basic.datacache.DataMap) → None

XML parse.

Parse RosettaScripts tags and set up this mover.

C++: protocols::denovo_design::residue_selectors::NamedSegmentSelector::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

Provide XSD information, enabling mechanical validation of input XML.

C++: protocols::denovo_design::residue_selectors::NamedSegmentSelector::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

set_residues(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.NamedSegmentSelector, residues_str: str) → None

C++: protocols::denovo_design::residue_selectors::NamedSegmentSelector::set_residues(const class std::basic_string<char> &) –> void

set_segment(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.NamedSegmentSelector, segment_name: str) → None

C++: protocols::denovo_design::residue_selectors::NamedSegmentSelector::set_segment(const class std::basic_string<char> &) –> void

class pyrosetta.rosetta.protocols.denovo_design.residue_selectors.PairedSheetResidueSelector

Bases: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector

Selects residues that are involved in strand-strand pairings

apply(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.PairedSheetResidueSelector, pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_bool

“Apply” function.

Given the pose, generate a vector of bools with entries for every residue in the pose indicating whether each residue is selected (“true”) or not (“false”).

C++: protocols::denovo_design::residue_selectors::PairedSheetResidueSelector::apply(const class core::pose::Pose &) const –> class utility::vector1<bool, class std::allocator<bool> >

assign(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.PairedSheetResidueSelector, : pyrosetta.rosetta.protocols.denovo_design.residue_selectors.PairedSheetResidueSelector) → pyrosetta.rosetta.protocols.denovo_design.residue_selectors.PairedSheetResidueSelector

C++: protocols::denovo_design::residue_selectors::PairedSheetResidueSelector::operator=(const class protocols::denovo_design::residue_selectors::PairedSheetResidueSelector &) –> class protocols::denovo_design::residue_selectors::PairedSheetResidueSelector &

class_name() → str

Get the mover class name.

C++: protocols::denovo_design::residue_selectors::PairedSheetResidueSelector::class_name() –> std::string

clone(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.PairedSheetResidueSelector) → pyrosetta.rosetta.core.select.residue_selector.ResidueSelector

Clone operator.

Copy the current object (creating the copy on the heap) and return an owning pointer to the copy. All ResidueSelectors must implement this.

C++: protocols::denovo_design::residue_selectors::PairedSheetResidueSelector::clone() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>

get_name(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.PairedSheetResidueSelector) → str

Get the mover class name.

C++: protocols::denovo_design::residue_selectors::PairedSheetResidueSelector::get_name() const –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.PairedSheetResidueSelector, tag: pyrosetta.rosetta.utility.tag.Tag, datamap: pyrosetta.rosetta.basic.datacache.DataMap) → None

XML parse.

Parse RosettaScripts tags and set up this mover.

C++: protocols::denovo_design::residue_selectors::PairedSheetResidueSelector::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

Provide XSD information, enabling mechanical validation of input XML.

C++: protocols::denovo_design::residue_selectors::PairedSheetResidueSelector::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

set_secstruct(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.PairedSheetResidueSelector, secstruct: str) → None

Sets secondary structure to be used in calculations

C++: protocols::denovo_design::residue_selectors::PairedSheetResidueSelector::set_secstruct(const class std::basic_string<char> &) –> void

set_sheet_topology(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.PairedSheetResidueSelector, sheet_topology: str) → None

Sets sheet topology to be filtered

C++: protocols::denovo_design::residue_selectors::PairedSheetResidueSelector::set_sheet_topology(const class std::basic_string<char> &) –> void