calibur¶

Bindings for protocols::cluster::calibur namespace

class pyrosetta.rosetta.protocols.cluster.calibur.ADJ_LIST_MODE¶

Bases: pybind11_builtins.pybind11_object

Members:

MATRIX

LIST

LITE

class pyrosetta.rosetta.protocols.cluster.calibur.EST_THRESHOLD_MODE¶

Bases: pybind11_builtins.pybind11_object

Members:

PERCENT_EDGES

MIN_AVG_DIST_BASED

MOST_FREQ_BASED

ROSETTA

SAMPLED_ROSETTA

USER_SPECIFIED

class pyrosetta.rosetta.protocols.cluster.calibur.INPUT_FILE_TYPE¶

Bases: pybind11_builtins.pybind11_object

Members:

UNKNOWN

SILENT_FILE

PDB_LIST

pyrosetta.rosetta.protocols.cluster.calibur.RMSD(coords1: pyrosetta.rosetta.std.vector_double, coords2: pyrosetta.rosetta.std.vector_double, n: int) → float¶: C++: protocols::cluster::calibur::RMSD(class std::vector<double, class std::allocator<double> > &, class std::vector<double, class std::allocator<double> > &, int) –> double

pyrosetta.rosetta.protocols.cluster.calibur.center_residues(calpha_vector: pyrosetta.rosetta.std.vector_double, num_residue_: int) → None¶: C++: protocols::cluster::calibur::center_residues(class std::vector<double, class std::allocator<double> > &, int) –> void

pyrosetta.rosetta.protocols.cluster.calibur.cubic_roots1(a2: float, a1: float, a0: float, z: float) → None¶: C++: protocols::cluster::calibur::cubic_roots1(double, double, double, double *) –> void

pyrosetta.rosetta.protocols.cluster.calibur.cubic_roots2(a2: float, a1: float, a0: float, z: float) → None¶

This is faster but leaves no option for obtaining imaginary roots.: (After “-O” in GCC, the speed gain is not much, only ~4%)

C++: protocols::cluster::calibur::cubic_roots2(double, double, double, double *) –> void

pyrosetta.rosetta.protocols.cluster.calibur.fast_rmsd(coords1: pyrosetta.rosetta.std.vector_double, coords2: pyrosetta.rosetta.std.vector_double, n: int) → float¶: C++: protocols::cluster::calibur::fast_rmsd(class std::vector<double, class std::allocator<double> > &, class std::vector<double, class std::allocator<double> > &, int) –> double

pyrosetta.rosetta.protocols.cluster.calibur.filetype(filename: str) → pyrosetta.rosetta.protocols.cluster.calibur.INPUT_FILE_TYPE¶: C++: protocols::cluster::calibur::filetype(const class std::basic_string<char> &) –> enum protocols::cluster::calibur::INPUT_FILE_TYPE

pyrosetta.rosetta.protocols.cluster.calibur.num_lines_in_file(filename: str) → int¶: C++: protocols::cluster::calibur::num_lines_in_file(const class std::basic_string<char> &) –> unsigned int

pyrosetta.rosetta.protocols.cluster.calibur.toFloat(aString: str) → float¶: C++: protocols::cluster::calibur::toFloat(const class std::basic_string<char> &) –> double

pyrosetta.rosetta.protocols.cluster.calibur.toInt(aString: str) → int¶: C++: protocols::cluster::calibur::toInt(const class std::basic_string<char> &) –> int