residue_selector¶

Bindings for protocols::antibody::residue_selector namespace

class pyrosetta.rosetta.protocols.antibody.residue_selector.AntibodyRegionSelector¶

Bases: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector

A simple selector to select residues of particular antibody regions.

apply(self: pyrosetta.rosetta.protocols.antibody.residue_selector.AntibodyRegionSelector, pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_bool¶

“Apply” function.

Given the pose, generate a vector of bools with entries for every residue in the pose indicating whether each residue is selected (“true”) or not (“false”).

C++: protocols::antibody::residue_selector::AntibodyRegionSelector::apply(const class core::pose::Pose &) const –> class utility::vector1<bool, class std::allocator<bool> >

assign(self: pyrosetta.rosetta.protocols.antibody.residue_selector.AntibodyRegionSelector, : pyrosetta.rosetta.protocols.antibody.residue_selector.AntibodyRegionSelector) → pyrosetta.rosetta.protocols.antibody.residue_selector.AntibodyRegionSelector¶: C++: protocols::antibody::residue_selector::AntibodyRegionSelector::operator=(const class protocols::antibody::residue_selector::AntibodyRegionSelector &) –> class protocols::antibody::residue_selector::AntibodyRegionSelector &

class_name() → str¶

Get the mover class name.

C++: protocols::antibody::residue_selector::AntibodyRegionSelector::class_name() –> std::string

clone(self: pyrosetta.rosetta.protocols.antibody.residue_selector.AntibodyRegionSelector) → pyrosetta.rosetta.core.select.residue_selector.ResidueSelector¶

Clone operator.

Copy the current object (creating the copy on the heap) and return an owning pointer to the copy. All ResidueSelectors must implement this.

C++: protocols::antibody::residue_selector::AntibodyRegionSelector::clone() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>

get_name(self: pyrosetta.rosetta.protocols.antibody.residue_selector.AntibodyRegionSelector) → str¶

Get the mover class name.

C++: protocols::antibody::residue_selector::AntibodyRegionSelector::get_name() const –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.antibody.residue_selector.AntibodyRegionSelector, tag: pyrosetta.rosetta.utility.tag.Tag, datamap: pyrosetta.rosetta.basic.datacache.DataMap) → None¶

XML parse.

Parse RosettaScripts tags and set up this mover.

C++: protocols::antibody::residue_selector::AntibodyRegionSelector::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None¶

Provide XSD information, enabling mechanical validation of input XML.

C++: protocols::antibody::residue_selector::AntibodyRegionSelector::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

set_ab_info(self: pyrosetta.rosetta.protocols.antibody.residue_selector.AntibodyRegionSelector, ab_info: pyrosetta.rosetta.protocols.antibody.AntibodyInfo) → None¶: C++: protocols::antibody::residue_selector::AntibodyRegionSelector::set_ab_info(class std::shared_ptr<const class protocols::antibody::AntibodyInfo>) –> void

set_region(self: pyrosetta.rosetta.protocols.antibody.residue_selector.AntibodyRegionSelector, region: pyrosetta.rosetta.protocols.antibody.AntibodyRegionEnum) → None¶: C++: protocols::antibody::residue_selector::AntibodyRegionSelector::set_region(enum protocols::antibody::AntibodyRegionEnum) –> void

class pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector¶

Bases: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector

Select CDR residues.

apply(self: pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector, pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_bool¶

“Apply” function.

Given the pose, generate a vector of bools with entries for every residue in the pose indicating whether each residue is selected (“true”) or not (“false”).

C++: protocols::antibody::residue_selector::CDRResidueSelector::apply(const class core::pose::Pose &) const –> class utility::vector1<bool, class std::allocator<bool> >

assign(self: pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector, : pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector) → pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector¶: C++: protocols::antibody::residue_selector::CDRResidueSelector::operator=(const class protocols::antibody::residue_selector::CDRResidueSelector &) –> class protocols::antibody::residue_selector::CDRResidueSelector &

class_name() → str¶

Get the mover class name.

C++: protocols::antibody::residue_selector::CDRResidueSelector::class_name() –> std::string

clone(self: pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector) → pyrosetta.rosetta.core.select.residue_selector.ResidueSelector¶

Clone operator.

Copy the current object (creating the copy on the heap) and return an owning pointer to the copy. All ResidueSelectors must implement this.

C++: protocols::antibody::residue_selector::CDRResidueSelector::clone() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>

get_name(self: pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector) → str¶

Get the mover class name.

C++: protocols::antibody::residue_selector::CDRResidueSelector::get_name() const –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector, tag: pyrosetta.rosetta.utility.tag.Tag, datamap: pyrosetta.rosetta.basic.datacache.DataMap) → None¶

XML parse.

Parse RosettaScripts tags and set up this mover.

C++: protocols::antibody::residue_selector::CDRResidueSelector::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None¶

Provide XSD information, enabling mechanical validation of input XML.

C++: protocols::antibody::residue_selector::CDRResidueSelector::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

set_ab_info(self: pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector, ab_info: pyrosetta.rosetta.protocols.antibody.AntibodyInfo) → None¶: C++: protocols::antibody::residue_selector::CDRResidueSelector::set_ab_info(class std::shared_ptr<const class protocols::antibody::AntibodyInfo>) –> void

set_cdr(self: pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector, cdr: pyrosetta.rosetta.protocols.antibody.CDRNameEnum) → None¶

Set a single CDR to select

C++: protocols::antibody::residue_selector::CDRResidueSelector::set_cdr(enum protocols::antibody::CDRNameEnum) –> void

set_cdrs(*args, **kwargs)¶

Overloaded function.

set_cdrs(self: pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector, cdrs: pyrosetta.rosetta.utility.vector1_bool) -> None

C++: protocols::antibody::residue_selector::CDRResidueSelector::set_cdrs(class utility::vector1<bool, class std::allocator<bool> >) –> void

set_cdrs(self: pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector, cdrs: pyrosetta.rosetta.utility.vector1_protocols_antibody_CDRNameEnum) -> None

C++: protocols::antibody::residue_selector::CDRResidueSelector::set_cdrs(class utility::vector1<enum protocols::antibody::CDRNameEnum, class std::allocator<enum protocols::antibody::CDRNameEnum> >) –> void