loop_graph¶

evaluator

Bindings for core::scoring::loop_graph namespace

class pyrosetta.rosetta.core.scoring.loop_graph.Loop¶

Bases: pybind11_builtins.pybind11_object

Directed edge between one position in the pose to another position. Records takeoff_pos & landing_pos (in full_model numbering). Also records ‘domain’, i.e. if there are multiple poses in a collection,

which pose.

assign(self: pyrosetta.rosetta.core.scoring.loop_graph.Loop, src: pyrosetta.rosetta.core.scoring.loop_graph.Loop) → pyrosetta.rosetta.core.scoring.loop_graph.Loop¶: C++: core::scoring::loop_graph::Loop::operator=(const class core::scoring::loop_graph::Loop &) –> class core::scoring::loop_graph::Loop &

landing_domain(self: pyrosetta.rosetta.core.scoring.loop_graph.Loop) → int¶: C++: core::scoring::loop_graph::Loop::landing_domain() const –> unsigned long

landing_pos(self: pyrosetta.rosetta.core.scoring.loop_graph.Loop) → int¶: C++: core::scoring::loop_graph::Loop::landing_pos() const –> unsigned long

set_landing_domain(self: pyrosetta.rosetta.core.scoring.loop_graph.Loop, setting: int) → None¶: C++: core::scoring::loop_graph::Loop::set_landing_domain(const unsigned long &) –> void

set_landing_pos(self: pyrosetta.rosetta.core.scoring.loop_graph.Loop, setting: int) → None¶: C++: core::scoring::loop_graph::Loop::set_landing_pos(const unsigned long &) –> void

set_takeoff_domain(self: pyrosetta.rosetta.core.scoring.loop_graph.Loop, setting: int) → None¶: C++: core::scoring::loop_graph::Loop::set_takeoff_domain(const unsigned long &) –> void

set_takeoff_pos(self: pyrosetta.rosetta.core.scoring.loop_graph.Loop, setting: int) → None¶: C++: core::scoring::loop_graph::Loop::set_takeoff_pos(const unsigned long &) –> void

takeoff_domain(self: pyrosetta.rosetta.core.scoring.loop_graph.Loop) → int¶: C++: core::scoring::loop_graph::Loop::takeoff_domain() const –> unsigned long

takeoff_pos(self: pyrosetta.rosetta.core.scoring.loop_graph.Loop) → int¶: C++: core::scoring::loop_graph::Loop::takeoff_pos() const –> unsigned long

pyrosetta.rosetta.core.scoring.loop_graph.get_6D_trans_rot_potential_evaluator(loop_cycle: pyrosetta.rosetta.core.scoring.loop_graph.LoopCycle, loop_fixed_cost: float, pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.core.scoring.loop_graph.evaluator.LoopClosePotentialEvaluator¶: C++: core::scoring::loop_graph::get_6D_trans_rot_potential_evaluator(const class core::scoring::loop_graph::LoopCycle &, const double &, const class core::pose::Pose &) –> class std::shared_ptr<const class core::scoring::loop_graph::evaluator::LoopClosePotentialEvaluator>

pyrosetta.rosetta.core.scoring.loop_graph.get_loop_atom(*args, **kwargs)¶

Overloaded function.

get_loop_atom(res: int, pose: pyrosetta.rosetta.core.pose.Pose, atom_id: pyrosetta.rosetta.core.id.AtomID, xyz: pyrosetta.rosetta.numeric.xyzVector_double_t, takeoff: bool) -> None

C++: core::scoring::loop_graph::get_loop_atom(const unsigned long, const class core::pose::Pose &, class core::id::AtomID &, class numeric::xyzVector<double> &, const bool) –> void

get_loop_atom(res: int, pose: pyrosetta.rosetta.core.pose.Pose, atom_name: str, atom_id: pyrosetta.rosetta.core.id.AtomID, xyz: pyrosetta.rosetta.numeric.xyzVector_double_t) -> None

C++: core::scoring::loop_graph::get_loop_atom(const unsigned long, const class core::pose::Pose &, const class std::basic_string<char> &, class core::id::AtomID &, class numeric::xyzVector<double> &) –> void

pyrosetta.rosetta.core.scoring.loop_graph.get_loop_close_potential(pose: pyrosetta.rosetta.core.pose.Pose, loop_cycle: pyrosetta.rosetta.core.scoring.loop_graph.LoopCycle, loop_fixed_cost: float, use_6D_potential: bool) → pyrosetta.rosetta.core.scoring.loop_graph.evaluator.LoopClosePotentialEvaluator¶: C++: core::scoring::loop_graph::get_loop_close_potential(const class core::pose::Pose &, const class core::scoring::loop_graph::LoopCycle &, const double &, const bool) –> class std::shared_ptr<const class core::scoring::loop_graph::evaluator::LoopClosePotentialEvaluator>