core.init: Mini-Rosetta version 52530 from https://svn.rosettacommons.org/source/trunk/rosetta/rosetta_source core.init: command: condor_exec.exe -seed_offset 41 -database /home/rosie/rosie/rosie.back/data/antibody/rosetta_database -s FR_0001.pdb -scorefile score.sf -multiple_processes_writing_to_one_directory -ex1 -ex2 -antibody::remodel perturb_kic -antibody::snugfit true -antibody::refine refine_kic -antibody::cter_insert false -antibody::flank_residue_min true -antibody::h3_filter true -antibody::h3_filter_tolerance 20 -antibody::h3_no_stem_graft true -nstruct 50 core.init: 'RNG device' seed mode, using '/dev/urandom', seed=430971823 seed_offset=41 real_seed=430971864 core.init.random: RandomGenerator:init: Normal mode, seed=430971864 RG_type=mt19937 protocols.antibody2.AntibodyModelerProtocol: Setting Up defaults.......... protocols.antibody2.AntibodyModelerProtocol: Start Reading and Setting Options ... protocols.antibody2.AntibodyModelerProtocol: Finish Reading and Setting Options !!! core.scoring.etable: Starting energy table calculation core.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well core.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6) core.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6) core.scoring.etable: Finished calculating energy tables. basic.io.database: Database file opened: scoring/score_functions/PairEPotential/pdb_pair_stats_fine basic.io.database: Database file opened: scoring/score_functions/hbonds/standard_params/HBPoly1D.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/standard_params/HBFadeIntervals.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/standard_params/HBEval.csv basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/env_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cbeta_den.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/pair_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cenpack_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/env_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cbeta_den.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/pair_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cenpack_log.txt basic.io.database: Database file opened: scoring/score_functions/MembranePotential/CEN6_mem_env_log.txt basic.io.database: Database file opened: scoring/score_functions/MembranePotential/CEN10_mem_env_log.txt basic.io.database: Database file opened: scoring/score_functions/MembranePotential/memcbeta_den.txt basic.io.database: Database file opened: scoring/score_functions/MembranePotential/mem_pair_log.txt basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_n basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_pp basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/env_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cbeta_den.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/pair_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cenpack_log.txt basic.io.database: Database file opened: scoring/score_functions/rama/Rama_smooth_dyn.dat_ss_6.4 protocols.antibody2: //////////////////////////////////////////////////////////////////////////////// protocols.antibody2: /// protocols.antibody2: /// Rosetta 3 Antibody Modeler /// protocols.antibody2: /// /// protocols.antibody2: /// camelid : 0 protocols.antibody2: /// protocols.antibody2: /// ****** model_h3 : 1 protocols.antibody2: /// h3_perturb_type = 'perturb_kic' protocols.antibody2: /// cter_insert = 0 protocols.antibody2: /// h3_filter = 1 protocols.antibody2: /// protocols.antibody2: /// ****** snugfit : 1 protocols.antibody2: /// LH_repulsive_ramp = 1 protocols.antibody2: /// protocols.antibody2: /// ****** refine_h3 : 1 protocols.antibody2: /// h3_refine_type = 'refine_kic' protocols.antibody2: /// h3_filter = 1 protocols.antibody2: /// h3_filter_tolerance = 20 protocols.antibody2: /// protocols.antibody2: //////////////////////////////////////////////////////////////////////////////// protocols.antibody2: protocols.jd2.PDBJobInputter: Instantiate PDBJobInputter protocols.jd2.PDBJobInputter: PDBJobInputter::fill_jobs protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 2 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 3 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 4 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 5 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 6 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 7 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 8 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 9 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 10 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 11 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 12 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 13 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 14 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 15 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 16 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 17 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 18 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 19 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 20 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 21 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 22 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 23 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 24 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 25 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 26 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 27 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 28 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 29 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 30 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 31 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 32 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 33 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 34 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 35 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 36 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 37 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 38 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 39 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 40 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 41 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 42 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 43 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 44 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 45 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 46 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 47 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 48 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 49 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 50 protocols.evaluation.ChiWellRmsdEvaluatorCreator: Evaluation Creator active ... protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from PDB FR_0001.pdb core.chemical.ResidueTypeSet: Finished initializing fa_standard residue type set. Created 6352 residue types core.conformation.Conformation: Found disulfide between residues 132 206 core.conformation.Conformation: current variant for 132 CYS core.conformation.Conformation: current variant for 206 CYS core.conformation.Conformation: current variant for 132 CYD core.conformation.Conformation: current variant for 206 CYD core.pack.task: Packer task: initialize from command line() protocols.antibody2.AntibodyModelerProtocol: AAAAAAAA cst_weight: 0 protocols.antibody2.AntibodyModelerProtocol: Danger Will Robinson! Native is an impostor! protocols.antibody2.AntibodyModelerProtocol: 'native_pose' is just a copy of the 'input_pose' protocols.antibody2.AntibodyModelerProtocol: since you didn't sepcifiy the native pdb name antibody2.AntibodyInfo: Successfully finished the CDR defintion antibody2.AntibodyInfo: AC Detecting Regular CDR H3 Stem Type antibody2.AntibodyInfo: AC Finished Detecting Regular CDR H3 Stem Type: KINKED antibody2.AntibodyInfo: AC Finished Detecting Regular CDR H3 Stem Type: Kink: 1 Extended: 0 protocols.antibody2.AntibodyModelerProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.antibody2.AntibodyModelerProtocol: /// Rosetta Antibody Info /// protocols.antibody2.AntibodyModelerProtocol: /// /// protocols.antibody2.AntibodyModelerProtocol: /// Antibody Type: Regular Antibody protocols.antibody2.AntibodyModelerProtocol: /// Predict H3 Cterminus Base: KINKED protocols.antibody2.AntibodyModelerProtocol: /// protocols.antibody2.AntibodyModelerProtocol: /// H1 info: protocols.antibody2.AntibodyModelerProtocol: /// length: 10 protocols.antibody2.AntibodyModelerProtocol: /// sequence: GYTFTNYGMN protocols.antibody2.AntibodyModelerProtocol: /// loop_info: LOOP 136 145 141 0 0 protocols.antibody2.AntibodyModelerProtocol: /// H2 info: protocols.antibody2.AntibodyModelerProtocol: /// length: 17 protocols.antibody2.AntibodyModelerProtocol: /// sequence: WINTYTGEPTYADDFKE protocols.antibody2.AntibodyModelerProtocol: /// loop_info: LOOP 160 176 168 0 0 protocols.antibody2.AntibodyModelerProtocol: /// H3 info: protocols.antibody2.AntibodyModelerProtocol: /// length: 14 protocols.antibody2.AntibodyModelerProtocol: /// sequence: DYYGSTYPYYAMDY protocols.antibody2.AntibodyModelerProtocol: /// loop_info: LOOP 209 222 210 0 0 protocols.antibody2.AntibodyModelerProtocol: /// L1 info: protocols.antibody2.AntibodyModelerProtocol: /// length: 12 protocols.antibody2.AntibodyModelerProtocol: /// sequence: RASSSVSSSYLH protocols.antibody2.AntibodyModelerProtocol: /// loop_info: LOOP 24 35 30 0 0 protocols.antibody2.AntibodyModelerProtocol: /// L2 info: protocols.antibody2.AntibodyModelerProtocol: /// length: 7 protocols.antibody2.AntibodyModelerProtocol: /// sequence: STSNLAS protocols.antibody2.AntibodyModelerProtocol: /// loop_info: LOOP 51 57 54 0 0 protocols.antibody2.AntibodyModelerProtocol: /// L3 info: protocols.antibody2.AntibodyModelerProtocol: /// length: 9 protocols.antibody2.AntibodyModelerProtocol: /// sequence: QQYSGYPYT protocols.antibody2.AntibodyModelerProtocol: /// loop_info: LOOP 90 98 94 0 0 protocols.antibody2.AntibodyModelerProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.antibody2.AntibodyModelerProtocol: protocols.antibody2.H3CterInsert: Reading CDR H3 C-ter Fragments protocols.antibody2.H3CterInsert: LOOP 209 222 210 0 0 protocols.antibody2.H3CterInsert: cdr_h3_size=14 protocols.antibody2.H3CterInsert: aa_1name.size()=18 protocols.antibody2.H3CterInsert: ARDYYGSTYPYYAMDYWG protocols.antibody2.H3CterInsert: Finished reading CDR H3 C-ter Fragments protocols.antibody2.ModelCDRH3: Applying CDR H3 modeler antibody2.AntibodyUtil: Utility: Setting up simple one loop fold tree antibody2.AntibodyUtil: Utility: Finished setting up simple one loop fold tree core.chemical.ResidueTypeSet: Finished initializing centroid residue type set. Created 1980 residue types core.conformation.Conformation: Found disulfide between residues 22 96 core.conformation.Conformation: current variant for 22 CYS core.conformation.Conformation: current variant for 96 CYS core.conformation.Conformation: current variant for 22 CYD core.conformation.Conformation: current variant for 96 CYD core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: ALL_LOOPS:LOOP begin end cut skip_rate extended protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: LOOP 209 222 210 0 1 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: SELECTEDLOOPS:LOOP begin end cut skip_rate extended protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: LOOP 209 222 210 0 1 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: protocols.loops.loops_main: Pose fold tree FOLD_TREE EDGE 1 207 -1 EDGE 207 210 -1 EDGE 207 224 1 EDGE 224 211 -1 EDGE 224 232 -1 protocols.loops.loops_main: protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: Setting extended torsions: LOOP 209 222 210 0 1 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: Building Loop: LOOP 209 222 210 0 1 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: Building Loop attempt: 0 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: perturb_one_loop_with_KIC: 209 14 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: remodel init temp: 2 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: remodel final temp: 1 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: kinematic initial perturb with start_res: 209 middle res: 215 end_res: 222 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: loop rmsd before initial kinematic perturbation:0 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: Attempting loop building: 0 ... protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: initial kinematic perturbation complete protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: loop rmsd after initial kinematic perturbation:4.79464 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -70.7723 -70.7723 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 3.80707 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 3.85983 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 3.832 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.72109 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.6916 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.69521 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.7087 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.67018 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.50946 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.48813 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.47676 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.47171 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.21766 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.30319 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.36989 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.15053 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.10946 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.11436 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.09034 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.09068 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.21412 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.21876 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.2278 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.22724 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.22593 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.18979 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.53288 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.50845 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.495 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.49289 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.49263 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.49137 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.38676 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.31303 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.31373 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.28357 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.46969 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.46352 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.47849 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.33657 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.33371 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.33159 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.34222 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.3336 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.33355 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.63785 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.66819 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.33633 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.41504 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.43173 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.42937 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.43732 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.43855 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.5135 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.58766 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.59265 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.57704 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.58855 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.60118 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.60128 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.61798 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.62253 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.76399 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.76661 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.76574 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.77154 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.76914 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.74678 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.74655 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.97592 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.97314 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.99349 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.99709 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.95329 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.95132 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.00651 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.05915 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.98486 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.98855 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.93822 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.95228 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.9599 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.9306 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.00094 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.01326 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.01243 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.02329 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.02113 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.88434 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 3.96666 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 3.97261 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 3.97009 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 3.92535 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 3.92517 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 3.91811 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 3.92156 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 3.4328 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.32924 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.63247 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.6309 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.81935 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.81778 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.80558 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.81159 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.69033 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.70219 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.9109 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.91299 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.24914 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.25614 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.2571 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.92265 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.0359 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.2948 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.29473 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.30821 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.32546 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.28945 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.29577 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.05248 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.06681 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.06537 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.05681 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.06258 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.08366 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.08278 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.06171 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.06806 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.07383 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.07546 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.03056 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.04461 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.03988 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.03197 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.03247 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.20145 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.13214 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.11971 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.01787 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.9312 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.06915 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.56462 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.28323 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.71966 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.72072 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.80615 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.79948 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.85579 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.85462 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.40428 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.43435 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.4358 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.43275 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.43131 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.46128 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.49592 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.51529 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.50671 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.50575 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.50406 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.50039 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.48685 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.55405 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.59425 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.59542 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.5753 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.60649 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.19126 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.04904 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.0667 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.06946 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.07707 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.04827 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.38762 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.38836 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.3882 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.38716 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.18744 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.426 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.4325 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.4195 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.45226 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.41347 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.40701 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.45773 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.33093 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.32249 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.26058 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.23897 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.23442 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.23284 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.9604 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.18224 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.11811 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.475 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.47179 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.47096 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.47251 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.47198 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.59477 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.5908 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.60119 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.59704 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.59628 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.63338 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.64181 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.64054 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.64239 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.6403 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.40476 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.39987 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.39809 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.70297 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.70194 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.69289 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.69211 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.7266 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.68523 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.75832 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.68136 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.69141 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.67153 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.66952 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.70366 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.72056 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.71635 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.71504 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.72924 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.38357 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.39829 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.4041 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.40631 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.40752 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.40965 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.40788 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.76785 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.76447 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.76492 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.76464 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.76076 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.7505 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.7577 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.19284 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.19137 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.19069 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.17642 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.17595 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.17534 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.17891 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.17931 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.09926 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.09671 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.04294 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.11507 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.10962 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.12477 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.12313 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.03496 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.97405 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.85648 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.85745 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.85758 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.85526 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.89603 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.903 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.90318 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.90262 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.8785 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.87212 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.87121 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.87224 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.87487 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.94024 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.57606 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.58272 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.59525 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.59227 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.58503 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.58509 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.58363 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.57883 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.58454 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.53802 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.53674 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.41841 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.43009 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.11983 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.12068 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.1247 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.47478 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.40134 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.40182 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.40122 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.48456 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.48292 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.48173 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.42835 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.56544 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.56987 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.39564 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.40901 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.40944 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.4124 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.4099 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.36875 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.3678 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.36295 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.38279 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.59218 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.59448 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.59507 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.59417 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.59984 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.5942 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.59246 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.59278 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.59099 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.58503 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.57229 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.58142 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.50203 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.49581 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.50307 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.5013 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.50168 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.81381 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.64557 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.6443 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.64446 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.89246 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.8571 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.07894 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.07723 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.91341 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.91704 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.94084 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.90565 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.87177 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.87112 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.87941 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.88475 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.41798 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.41661 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.41624 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.43369 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.42539 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.44864 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.52936 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.68869 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.69551 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.64067 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.64039 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.65306 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.57565 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.60951 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.60602 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.61009 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.52849 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.52593 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.52578 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.52105 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.58795 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.5862 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.58845 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.58842 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.59544 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.59441 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.58132 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.62474 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.53043 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.55446 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.60753 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.62256 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.59088 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.59239 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.71839 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.73188 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.72778 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.31711 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.31482 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.31613 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.36949 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.3696 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.34218 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.35032 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.84977 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.84692 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.84516 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.72 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.71878 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.72275 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.76117 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.76591 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.82344 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.81869 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.8374 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.83728 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.83874 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.866 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.84724 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.85041 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.85895 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.85675 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.87938 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.87721 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.94669 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.25814 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.25366 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.24225 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.1416 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.17324 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.19701 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.18204 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.18517 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.20292 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.18684 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.183 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.18143 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.20962 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.20204 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.20638 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.20468 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.28695 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.26959 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.26857 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.26851 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.29078 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.26999 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.19118 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.17494 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.06922 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.1271 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.13721 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.14788 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.16596 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.22047 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.21787 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.22232 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.24869 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.26379 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.26584 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.27609 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.27139 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.29546 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.18002 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.17704 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.42327 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.4227 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.4146 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.40664 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.43147 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.46577 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.46964 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.4275 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.42938 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.45157 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.44197 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.48294 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.48202 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.66738 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.67386 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.67934 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.70014 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.71683 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.6038 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.60486 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.57149 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.74554 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.45221 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.45359 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.45446 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.40976 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.40939 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.39976 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.39759 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.39943 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.38796 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.34396 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.08653 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.1424 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.67513 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.19643 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.15754 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.19272 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.19443 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.26429 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.25509 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.26259 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.26558 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.25581 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.25801 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.25549 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.26408 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.36636 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.36993 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.37401 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.2728 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.27395 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.27665 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.28321 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.45892 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.45144 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.47991 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.47872 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.47499 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: result of loop closure:0 success, 3 failure 0 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: Loopstat: 209 222 209 222 14 time 175.0 0 time 0.0 -91.473 ext protocols.antibody2.ModelCDRH3: Finished Modeling Centroid CDR H3 loop protocols.antibody2.ModelCDRH3: Finished applying CDR H3 modeler protocols::checkpoint: Deleting checkpoints of LoopMover protocols.antibody2.CDRsMinPackMin: FOLD_TREE EDGE 1 23 -1 EDGE 23 36 1 EDGE 23 30 -1 EDGE 36 31 -1 EDGE 36 50 -1 EDGE 50 58 2 EDGE 50 54 -1 EDGE 58 55 -1 EDGE 58 89 -1 EDGE 89 99 3 EDGE 89 94 -1 EDGE 99 95 -1 EDGE 99 135 -1 EDGE 135 146 4 EDGE 135 141 -1 EDGE 146 142 -1 EDGE 146 159 -1 EDGE 159 177 5 EDGE 159 168 -1 EDGE 177 169 -1 EDGE 177 208 -1 EDGE 208 223 6 EDGE 208 210 -1 EDGE 223 211 -1 EDGE 223 232 -1 protocols.antibody2.CDRsMinPackMin: protocols.loops.loops_main: Added cutpoint variants: RES: 30 protocols.loops.loops_main: Added cutpoint variants: RES: 54 protocols.loops.loops_main: Added cutpoint variants: RES: 94 protocols.loops.loops_main: Added cutpoint variants: RES: 141 protocols.loops.loops_main: Added cutpoint variants: RES: 168 protocols.loops.loops_main: Added cutpoint variants: RES: 210 basic.io.database: Database file opened: scoring/score_functions/disulfides/fa_SS_distance_score core.pack.dunbrack: Dunbrack library took 0.06 seconds to load from binary antibody2.AntibodyUtil: Utility: Setting Up Packer Task antibody2.AntibodyUtil: Utility: Done: Setting Up Packer Task core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 4164 rotamers at 148 positions. core.pack.pack_rotamers: IG: 7570536 bytes protocols.antibody2.RefineBetaBarrel: start finalize_setup function ... antibody2.AntibodyUtil: Utility: Setting Up Packer Task antibody2.AntibodyUtil: Utility: Done: Setting Up Packer Task core.pack.task: Packer task: initialize from command line() protocols.antibody2.RefineBetaBarrel: FOLD_TREE EDGE 1 23 -1 EDGE 23 30 -1 EDGE 23 36 2 EDGE 36 31 -1 EDGE 36 37 -1 EDGE 37 50 -1 EDGE 50 54 -1 EDGE 37 134 1 EDGE 134 111 -1 EDGE 50 58 3 EDGE 58 55 -1 EDGE 58 89 -1 EDGE 89 94 -1 EDGE 134 135 -1 EDGE 135 141 -1 EDGE 89 99 4 EDGE 99 95 -1 EDGE 99 110 -1 EDGE 135 146 5 EDGE 146 142 -1 EDGE 146 159 -1 EDGE 159 168 -1 EDGE 159 177 6 EDGE 177 169 -1 EDGE 177 208 -1 EDGE 208 210 -1 EDGE 208 223 7 EDGE 223 211 -1 EDGE 223 232 -1 protocols.antibody2.RefineBetaBarrel: protocols.loops.loops_main: Added cutpoint variants: RES: 30 protocols.loops.loops_main: Added cutpoint variants: RES: 54 protocols.loops.loops_main: Added cutpoint variants: RES: 94 protocols.loops.loops_main: Added cutpoint variants: RES: 141 protocols.loops.loops_main: Added cutpoint variants: RES: 168 protocols.loops.loops_main: Added cutpoint variants: RES: 210 protocols.antibody2.RefineBetaBarrel: finish finalize_setup function !!! protocols.antibody2.LHRepulsiveRamp: start apply function ... protocols.antibody2.LHRepulsiveRamp: repulsive ramp cycle 1: rep_weight = 0.02 protocols.docking.DockMCMCycle: Setting up defaults for DockMCMCycle: protocols.docking.DockMCMCycle: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockMCMCycle: /// Dockable Jumps: 1 /// protocols.docking.DockMCMCycle: /// Translation: 0.1 /// protocols.docking.DockMCMCycle: /// Rotation: 2 /// protocols.docking.DockMCMCycle: /// Scorefunction: /// protocols.docking.DockMCMCycle: ScoreFunction::show(): weights: (fa_atr 0.338) (fa_rep 0.02) (fa_sol 0.242) (hack_elec 0.026) (fa_pair 0.164) (hbond_sr_bb 0.245) (hbond_lr_bb 0.245) (hbond_bb_sc 0.245) (hbond_sc 0.245) (dslf_ss_dst 0.5) (dslf_cs_ang 2) (dslf_ss_dih 5) (dslf_ca_dih 5) (fa_dun 0.036) (chainbreak 1) (overlap_chainbreak 3.33333) energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 0 EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_protein_protein_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_monomer_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_max_dis: 5.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_min_dis: 1.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_die: 10 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_no_dis_dep_die: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockMCMCycle: HBondOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: include_intra_res_RNA_: false protocols.docking.DockMCMCycle: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockMCMCycle: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockMCMCycle: HBondOptions::show: params_database_tag_: standard_params protocols.docking.DockMCMCycle: HBondOptions::show: use_incorrect_deriv_: false protocols.docking.DockMCMCycle: HBondOptions::show: use_sp2_chi_penalty_: false protocols.docking.DockMCMCycle: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockMCMCycle: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: false protocols.docking.DockMCMCycle: HBondOptions::show: Mbhbond: false protocols.docking.DockMCMCycle: protocols.docking.DockMCMCycle: /// Packing scorefunction: /// protocols.docking.DockMCMCycle: ScoreFunction::show(): weights: (fa_atr 0.8) (fa_rep 0.44) (fa_sol 0.65) (fa_intra_rep 0.004) (pro_close 1) (fa_pair 0.49) (hbond_sr_bb 1.17) (hbond_lr_bb 1.17) (hbond_bb_sc 1.17) (hbond_sc 1.1) (dslf_ss_dst 0.5) (dslf_cs_ang 2) (dslf_ss_dih 5) (dslf_ca_dih 5) (fa_dun 0.56) (p_aa_pp 0.64) (ref 1) energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 0 EnergyMethodOptions::show: method_weights: ref 0.16 1.7 -0.67 -0.81 0.63 -0.17 0.56 0.24 -0.65 -0.1 -0.34 -0.89 0.02 -0.97 -0.98 -0.37 -0.27 0.29 0.91 0.51 EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_protein_protein_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_monomer_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_max_dis: 5.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_min_dis: 1.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_die: 10 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_no_dis_dep_die: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockMCMCycle: HBondOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: include_intra_res_RNA_: false protocols.docking.DockMCMCycle: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockMCMCycle: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockMCMCycle: HBondOptions::show: params_database_tag_: standard_params protocols.docking.DockMCMCycle: HBondOptions::show: use_incorrect_deriv_: false protocols.docking.DockMCMCycle: HBondOptions::show: use_sp2_chi_penalty_: false protocols.docking.DockMCMCycle: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockMCMCycle: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: false protocols.docking.DockMCMCycle: HBondOptions::show: Mbhbond: false protocols.docking.DockMCMCycle: protocols.docking.DockMCMCycle: //////////////////////////////////////////////////////////////////////////////// core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 1 core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 2 core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 3 core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 4 protocols.antibody2.LHRepulsiveRamp: repulsive ramp cycle 2: rep_weight = 0.10284 protocols.docking.DockMCMCycle: Setting up defaults for DockMCMCycle: protocols.docking.DockMCMCycle: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockMCMCycle: /// Dockable Jumps: 1 /// protocols.docking.DockMCMCycle: /// Translation: 0.1 /// protocols.docking.DockMCMCycle: /// Rotation: 2 /// protocols.docking.DockMCMCycle: /// Scorefunction: /// protocols.docking.DockMCMCycle: ScoreFunction::show(): weights: (fa_atr 0.338) (fa_rep 0.10284) (fa_sol 0.242) (hack_elec 0.026) (fa_pair 0.164) (hbond_sr_bb 0.245) (hbond_lr_bb 0.245) (hbond_bb_sc 0.245) (hbond_sc 0.245) (dslf_ss_dst 0.5) (dslf_cs_ang 2) (dslf_ss_dih 5) (dslf_ca_dih 5) (fa_dun 0.036) (chainbreak 1) (overlap_chainbreak 3.33333) energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 0 EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_protein_protein_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_monomer_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_max_dis: 5.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_min_dis: 1.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_die: 10 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_no_dis_dep_die: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockMCMCycle: HBondOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: include_intra_res_RNA_: false protocols.docking.DockMCMCycle: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockMCMCycle: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockMCMCycle: HBondOptions::show: params_database_tag_: standard_params protocols.docking.DockMCMCycle: HBondOptions::show: use_incorrect_deriv_: false protocols.docking.DockMCMCycle: HBondOptions::show: use_sp2_chi_penalty_: false protocols.docking.DockMCMCycle: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockMCMCycle: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: false protocols.docking.DockMCMCycle: HBondOptions::show: Mbhbond: false protocols.docking.DockMCMCycle: protocols.docking.DockMCMCycle: /// Packing scorefunction: /// protocols.docking.DockMCMCycle: ScoreFunction::show(): weights: (fa_atr 0.8) (fa_rep 0.44) (fa_sol 0.65) (fa_intra_rep 0.004) (pro_close 1) (fa_pair 0.49) (hbond_sr_bb 1.17) (hbond_lr_bb 1.17) (hbond_bb_sc 1.17) (hbond_sc 1.1) (dslf_ss_dst 0.5) (dslf_cs_ang 2) (dslf_ss_dih 5) (dslf_ca_dih 5) (fa_dun 0.56) (p_aa_pp 0.64) (ref 1) energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 0 EnergyMethodOptions::show: method_weights: ref 0.16 1.7 -0.67 -0.81 0.63 -0.17 0.56 0.24 -0.65 -0.1 -0.34 -0.89 0.02 -0.97 -0.98 -0.37 -0.27 0.29 0.91 0.51 EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_protein_protein_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_monomer_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_max_dis: 5.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_min_dis: 1.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_die: 10 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_no_dis_dep_die: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockMCMCycle: HBondOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: include_intra_res_RNA_: false protocols.docking.DockMCMCycle: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockMCMCycle: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockMCMCycle: HBondOptions::show: params_database_tag_: standard_params protocols.docking.DockMCMCycle: HBondOptions::show: use_incorrect_deriv_: false protocols.docking.DockMCMCycle: HBondOptions::show: use_sp2_chi_penalty_: false protocols.docking.DockMCMCycle: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockMCMCycle: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: false protocols.docking.DockMCMCycle: HBondOptions::show: Mbhbond: false protocols.docking.DockMCMCycle: protocols.docking.DockMCMCycle: //////////////////////////////////////////////////////////////////////////////// core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 1 core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 2 core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 3 core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 4 protocols.antibody2.LHRepulsiveRamp: repulsive ramp cycle 3: rep_weight = 0.18568 protocols.docking.DockMCMCycle: Setting up defaults for DockMCMCycle: protocols.docking.DockMCMCycle: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockMCMCycle: /// Dockable Jumps: 1 /// protocols.docking.DockMCMCycle: /// Translation: 0.1 /// protocols.docking.DockMCMCycle: /// Rotation: 2 /// protocols.docking.DockMCMCycle: /// Scorefunction: /// protocols.docking.DockMCMCycle: ScoreFunction::show(): weights: (fa_atr 0.338) (fa_rep 0.18568) (fa_sol 0.242) (hack_elec 0.026) (fa_pair 0.164) (hbond_sr_bb 0.245) (hbond_lr_bb 0.245) (hbond_bb_sc 0.245) (hbond_sc 0.245) (dslf_ss_dst 0.5) (dslf_cs_ang 2) (dslf_ss_dih 5) (dslf_ca_dih 5) (fa_dun 0.036) (chainbreak 1) (overlap_chainbreak 3.33333) energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 0 EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_protein_protein_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_monomer_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_max_dis: 5.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_min_dis: 1.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_die: 10 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_no_dis_dep_die: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockMCMCycle: HBondOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: include_intra_res_RNA_: false protocols.docking.DockMCMCycle: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockMCMCycle: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockMCMCycle: HBondOptions::show: params_database_tag_: standard_params protocols.docking.DockMCMCycle: HBondOptions::show: use_incorrect_deriv_: false protocols.docking.DockMCMCycle: HBondOptions::show: use_sp2_chi_penalty_: false protocols.docking.DockMCMCycle: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockMCMCycle: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: false protocols.docking.DockMCMCycle: HBondOptions::show: Mbhbond: false protocols.docking.DockMCMCycle: protocols.docking.DockMCMCycle: /// Packing scorefunction: /// protocols.docking.DockMCMCycle: ScoreFunction::show(): weights: (fa_atr 0.8) (fa_rep 0.44) (fa_sol 0.65) (fa_intra_rep 0.004) (pro_close 1) (fa_pair 0.49) (hbond_sr_bb 1.17) (hbond_lr_bb 1.17) (hbond_bb_sc 1.17) (hbond_sc 1.1) (dslf_ss_dst 0.5) (dslf_cs_ang 2) (dslf_ss_dih 5) (dslf_ca_dih 5) (fa_dun 0.56) (p_aa_pp 0.64) (ref 1) energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 0 EnergyMethodOptions::show: method_weights: ref 0.16 1.7 -0.67 -0.81 0.63 -0.17 0.56 0.24 -0.65 -0.1 -0.34 -0.89 0.02 -0.97 -0.98 -0.37 -0.27 0.29 0.91 0.51 EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_protein_protein_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_monomer_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_max_dis: 5.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_min_dis: 1.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_die: 10 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_no_dis_dep_die: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockMCMCycle: HBondOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: include_intra_res_RNA_: false protocols.docking.DockMCMCycle: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockMCMCycle: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockMCMCycle: HBondOptions::show: params_database_tag_: standard_params protocols.docking.DockMCMCycle: HBondOptions::show: use_incorrect_deriv_: false protocols.docking.DockMCMCycle: HBondOptions::show: use_sp2_chi_penalty_: false protocols.docking.DockMCMCycle: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockMCMCycle: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: false protocols.docking.DockMCMCycle: HBondOptions::show: Mbhbond: false protocols.docking.DockMCMCycle: protocols.docking.DockMCMCycle: //////////////////////////////////////////////////////////////////////////////// core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 1 core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 2 core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 3 core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 4 protocols.antibody2.LHRepulsiveRamp: finish apply function !!! protocols.antibody2.RefineBetaBarrel: finish repulsive ramping ! protocols.docking.DockMCMProtocol: in DockMCMProtocol.apply protocols.docking.DockMCMProtocol: Using the DockingTaskFactory. protocols.docking.DockMCMCycle: Setting up defaults for DockMCMCycle: protocols.docking.DockMCMCycle: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockMCMCycle: /// Dockable Jumps: 1 /// protocols.docking.DockMCMCycle: /// Translation: 0.1 /// protocols.docking.DockMCMCycle: /// Rotation: 5 /// protocols.docking.DockMCMCycle: /// Scorefunction: /// protocols.docking.DockMCMCycle: ScoreFunction::show(): weights: (fa_atr 0.338) (fa_rep 0.18568) (fa_sol 0.242) (hack_elec 0.026) (fa_pair 0.164) (hbond_sr_bb 0.245) (hbond_lr_bb 0.245) (hbond_bb_sc 0.245) (hbond_sc 0.245) (dslf_ss_dst 0.5) (dslf_cs_ang 2) (dslf_ss_dih 5) (dslf_ca_dih 5) (fa_dun 0.036) (chainbreak 1) (overlap_chainbreak 3.33333) energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 0 EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_protein_protein_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_monomer_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_max_dis: 5.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_min_dis: 1.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_die: 10 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_no_dis_dep_die: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockMCMCycle: HBondOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: include_intra_res_RNA_: false protocols.docking.DockMCMCycle: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockMCMCycle: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockMCMCycle: HBondOptions::show: params_database_tag_: standard_params protocols.docking.DockMCMCycle: HBondOptions::show: use_incorrect_deriv_: false protocols.docking.DockMCMCycle: HBondOptions::show: use_sp2_chi_penalty_: false protocols.docking.DockMCMCycle: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockMCMCycle: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: false protocols.docking.DockMCMCycle: HBondOptions::show: Mbhbond: false protocols.docking.DockMCMCycle: protocols.docking.DockMCMCycle: /// Packing scorefunction: /// protocols.docking.DockMCMCycle: ScoreFunction::show(): weights: (fa_atr 0.8) (fa_rep 0.44) (fa_sol 0.65) (fa_intra_rep 0.004) (pro_close 1) (fa_pair 0.49) (hbond_sr_bb 1.17) (hbond_lr_bb 1.17) (hbond_bb_sc 1.17) (hbond_sc 1.1) (dslf_ss_dst 0.5) (dslf_cs_ang 2) (dslf_ss_dih 5) (dslf_ca_dih 5) (fa_dun 0.56) (p_aa_pp 0.64) (ref 1) energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 0 EnergyMethodOptions::show: method_weights: ref 0.16 1.7 -0.67 -0.81 0.63 -0.17 0.56 0.24 -0.65 -0.1 -0.34 -0.89 0.02 -0.97 -0.98 -0.37 -0.27 0.29 0.91 0.51 EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_protein_protein_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_monomer_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_max_dis: 5.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_min_dis: 1.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_die: 10 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_no_dis_dep_die: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockMCMCycle: HBondOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: include_intra_res_RNA_: false protocols.docking.DockMCMCycle: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockMCMCycle: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockMCMCycle: HBondOptions::show: params_database_tag_: standard_params protocols.docking.DockMCMCycle: HBondOptions::show: use_incorrect_deriv_: false protocols.docking.DockMCMCycle: HBondOptions::show: use_sp2_chi_penalty_: false protocols.docking.DockMCMCycle: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockMCMCycle: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: false protocols.docking.DockMCMCycle: HBondOptions::show: Mbhbond: false protocols.docking.DockMCMCycle: protocols.docking.DockMCMCycle: //////////////////////////////////////////////////////////////////////////////// core.pack.task: Packer task: initialize from command line() core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1397 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1740896 bytes core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1374 rotamers at 42 positions. core.pack.pack_rotamers: IG: 1579824 bytes core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1374 rotamers at 42 positions. core.pack.pack_rotamers: IG: 1579824 bytes core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1367 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1579636 bytes core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1341 rotamers at 42 positions. core.pack.pack_rotamers: IG: 1559752 bytes core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1199 rotamers at 39 positions. core.pack.pack_rotamers: IG: 1224736 bytes core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() protocols.antibody2.RefineBetaBarrel: finish L_H Docking ! protocols.antibody2.RefineBetaBarrel: FINISH BETA BARREL REFINEMENT STEP !! antibody2.AntibodyUtil: Utility: Setting up simple fold tree antibody2.AntibodyUtil: Utility: Finished setting up simple fold tree protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 1 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1221 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1357284 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -254.814 -254.814 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -254.814 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.13847 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -258.563 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.14393 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -259.248 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.15145 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -262.812 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.19061 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -262.605 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.32154 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.434 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.33235 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.3231 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.279 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.40463 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.16 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.61269 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.376 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.61473 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.537 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.6096 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.58 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.93616 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.865 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.93429 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.047 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.8723 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.952 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.87079 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.89543 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.855 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.88953 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.281 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.68346 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.511 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.67204 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.924 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.66255 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.587 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.66975 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.875 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.7617 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.47 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.75143 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.967 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1221 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1306760 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -269.967 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -269.967 -273.047 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -269.967 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.75314 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.14 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.74188 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.059 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.74349 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.046 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.74456 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.798 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.74609 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.997 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.74326 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.973 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.7308 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.42 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.73957 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.466 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.73461 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.568 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.73704 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.495 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.73039 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.046 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1239 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1334952 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -271.046 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -271.046 -273.047 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -271.046 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.74652 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.083 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.78021 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.439 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.66711 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.407 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.6063 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.639 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.59282 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.432 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.69047 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.131 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.67702 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.835 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.6755 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.18 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.7274 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.784 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.73014 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.688 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.70922 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.923 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.71401 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.957 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.71675 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.91 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1243 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1416600 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -272.91 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -272.91 -273.18 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -272.91 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.71457 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.063 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.63272 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.693 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.55381 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.21 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.54779 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.58474 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.609 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.65715 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.03 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.65574 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.451 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.64287 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.193 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.56636 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.037 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.57148 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.961 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.58953 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.096 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.57753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.643 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.58484 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.669 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.49517 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.116 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.45621 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.48 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.40293 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.538 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.41784 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.848 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1218 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1265368 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -276.827 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -276.827 -277.538 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -276.827 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.43622 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.197 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.43663 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.907 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.19588 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.58 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.09716 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.899 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.06832 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.347 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.30646 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.39 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.28873 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.003 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.30088 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.443 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.28198 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.548 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.29102 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.437 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.27504 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.583 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.28405 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.661 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.78916 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.886 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.85616 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.915 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1246 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1259564 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -274.97 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -274.97 -277.538 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -274.97 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.87152 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.454 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.85392 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.207 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.8675 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.423 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.86894 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.462 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.88808 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.88091 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.318 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.88538 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.313 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.89132 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.042 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.79902 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.927 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.79652 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.72 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.80348 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.56 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.81574 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.78972 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.18 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.78039 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.695 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.79012 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.482 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.82838 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.32 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.83447 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.835 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.83387 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.637 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.54598 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.891 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.57998 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.658 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.67226 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.598 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1486 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1713452 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -277.605 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -277.605 -277.605 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -277.605 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.67518 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.64 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.37035 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.642 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.37664 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.757 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.38986 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.837 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.36638 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.793 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.35913 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.046 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.33623 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.174 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.33425 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.69 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.34015 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.397 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.32818 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.267 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1263 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1438552 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -276.267 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -276.267 -277.605 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -276.267 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 2 -277.605 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.66332 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.901 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.66144 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.391 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.01518 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.401 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.99655 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.044 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.99947 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.075 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.91912 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.874 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.91072 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.777 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.90503 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.218 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.91386 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.743 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.91521 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.535 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1205 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1253900 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -278.535 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -278.535 -278.743 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -278.535 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.91821 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.165 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.02785 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.995 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.91857 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.14 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.92031 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.494 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.91991 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.288 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.9225 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.192 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.96186 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.529 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.9606 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.348 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.9579 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.656 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.76632 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.533 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.74191 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.06 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.73487 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1177 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1180580 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -276.164 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -276.164 -278.743 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -276.164 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.73772 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.94 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.76462 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.008 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.77729 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.337 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.77405 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.215 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.77542 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.123 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.85961 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.042 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.87131 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.035 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.86281 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.059 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.86895 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.082 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.88193 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.029 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.93143 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.015 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1227 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1314092 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -276.252 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -276.252 -278.743 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -276.252 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.91985 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.57 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.92342 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.454 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.87466 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.535 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.86638 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.445 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.81102 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.541 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.81096 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.286 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.81451 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.269 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.82694 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.009 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.81755 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.838 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.821 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.891 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.82184 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.043 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.81734 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.182 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.79718 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.177 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.78295 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.863 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.78826 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.92 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.83694 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.424 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.83175 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.007 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.83559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.345 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.83437 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.312 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.83225 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.145 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.82789 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.104 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.84188 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.348 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1267 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1484380 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -272.348 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -272.348 -278.743 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -272.348 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.83106 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.826 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.83665 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.406 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.83866 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.543 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.76092 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.692 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.75468 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.044 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.73454 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.964 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.73814 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.044 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.60435 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.71 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.60143 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.664 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1273 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1464204 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -117.392 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -273.664 -278.743 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -273.664 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.60242 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.343 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.59944 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.261 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.69917 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.932 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.6963 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.744 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.93865 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.95 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.93379 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.896 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.93741 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.967 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.94332 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.646 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.84393 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.263 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.08998 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.779 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.08797 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.555 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.08997 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.413 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.10822 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.99 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.10763 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.69 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.11948 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.746 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1276 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1396756 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -272.746 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -272.746 -278.743 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -272.746 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.10634 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.83 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.0715 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.751 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.06568 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.666 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.07109 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.866 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.99535 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.284 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.99135 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.329 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.88688 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.056 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.85488 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.897 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.8603 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.343 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.87446 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.682 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.84927 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.602 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.85801 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.196 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.9088 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.835 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.85869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.372 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.8472 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.712 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.96813 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.335 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1225 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1340928 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -272.865 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -272.865 -278.743 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -272.865 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 3 -278.743 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.89601 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.328 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.89096 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.654 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.89146 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.319 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.05259 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.344 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.03722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.402 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.98234 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.347 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.98806 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.56 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.79155 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.227 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.82637 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.917 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1261 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1322384 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -276.917 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -276.917 -278.743 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -276.917 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.81031 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.412 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.84561 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.551 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.49736 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.985 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.38648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.567 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.38832 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.629 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.39024 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.597 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.38447 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.716 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.39035 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.684 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.42703 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.718 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.41147 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.125 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.41057 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.65 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.41492 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.599 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.43669 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.846 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.4271 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.52 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.42351 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.452 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.49762 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.243 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.49447 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.421 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.49797 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.375 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1215 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1370016 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -276.375 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -276.375 -278.743 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -276.375 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.54476 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.454 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.54879 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.337 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.54981 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.209 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.60853 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.62 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.60832 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.833 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.60592 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.69 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.60769 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.185 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.61547 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.525 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.6061 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.052 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.61165 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.087 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.61642 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.159 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.61645 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.313 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.56518 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.182 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1200 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1294556 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -276.27 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -276.27 -278.743 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -276.27 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.5583 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.413 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.56359 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.705 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.65821 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.643 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.6719 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.525 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.66707 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.644 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.66556 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.892 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.6642 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.154 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.65522 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.215 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.64057 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.83 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.64103 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.038 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1202 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1291708 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -274.038 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -274.038 -278.743 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -274.038 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.64238 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.924 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.63993 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.703 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.6391 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.452 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.44579 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.817 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.44801 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.702 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.32074 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.689 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.35203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.783 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.47074 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.297 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.48462 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.329 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.48134 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.297 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.4761 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.408 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1264 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1398960 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -278.408 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -278.408 -278.743 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -278.408 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.46696 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.425 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.46615 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.549 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.46151 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.536 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.63597 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.987 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.63296 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.346 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.57041 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.745 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1257 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1412976 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -278.936 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -278.936 -278.936 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -278.936 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.46639 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.775 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.45678 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.097 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.48756 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.102 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.46973 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.259 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.361 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.455 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.36864 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.437 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.37677 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.397 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.42778 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.562 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.42709 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.335 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1264 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1429324 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -278.335 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -278.335 -280.102 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -278.335 protocols.moves.TrialCounter: kic_refine_r1 trials= 383; accepts= 0.3629; energy_drop/trial= 0.00764 protocols.moves.TrialCounter: kic_refine_r2 trials= 392; accepts= 0.3597; energy_drop/trial= -0.04362 protocols.moves.TrialCounter: repack trials= 22; accepts= 0.9545; energy_drop/trial= -1.14022 antibody2.AntibodyUtil: Utility: Checking Kink/Extended CDR H3 Base Angle antibody2.AntibodyUtil: Base Dihedral: -151.05 antibody2.AntibodyUtil: Utility: Finished Checking Kink/Extended CDR H3 Base Angle: 0 protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 2 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1221 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1357284 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -254.55 -254.55 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -254.55 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 0.357892 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -256.28 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 0.368377 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -256.058 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.01903 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -259.486 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.00258 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -258.796 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.2391 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -258.435 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.2051 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -261.633 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.2202 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -261.389 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.2343 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -261.598 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.3188 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.254 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.3442 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -262.133 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.3179 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -261.27 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.2122 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -261.41 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.217 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -260.614 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.2194 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -260.834 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.1673 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -261.473 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.1644 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -260.966 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.1508 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -260.949 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 9.64607 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.588 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 9.58158 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.304 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 9.59387 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.414 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 9.60255 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.171 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1283 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1260744 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -264.563 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -265.171 -265.414 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -265.171 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 9.64846 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.131 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 9.67925 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.512 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 9.75384 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.017 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 9.75529 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.989 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 9.73985 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.642 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 9.74011 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.7 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 9.34592 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.099 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 9.34164 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.036 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 9.4429 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.128 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 9.44129 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.669 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 9.396 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.916 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 9.38935 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.863 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 9.4047 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.642 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 9.28293 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.059 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 9.28155 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.09 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 9.28248 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.942 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 9.28186 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.723 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 9.27964 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.355 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 9.28769 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.031 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1277 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1228984 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -266.031 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -266.031 -269.512 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -266.031 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 9.29368 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.295 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 9.21574 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.566 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 9.21201 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.81 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 9.22488 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.274 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 9.55521 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -260.793 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 9.55921 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -261.843 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 9.55668 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -261.54 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 9.54774 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -262.882 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.4473 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.53 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.453 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.123 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.0234 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.143 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.0299 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.354 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.0522 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.371 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.0154 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.825 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.0157 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.605 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.0834 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.138 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.083 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.271 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.0358 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.808 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.0468 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.85 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1169 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1245336 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -267.861 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -267.861 -269.512 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -267.861 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.0041 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.251 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.755 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.803 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.7645 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.123 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.7713 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.945 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.6936 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.158 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7033 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.002 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.6993 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.449 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.713 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.991 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7148 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.489 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.7359 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.303 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7372 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.319 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.8632 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.409 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.8826 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.554 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.9601 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.797 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.9338 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.123 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.8407 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.025 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.8344 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.688 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.9138 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.731 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.9144 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.81 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.9136 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.603 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.9538 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.827 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.9354 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.737 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1165 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1222188 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -267.737 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -267.737 -270.409 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -267.737 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.9316 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.625 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.9409 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.309 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.9465 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.761 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.9459 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.394 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.8411 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.063 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.8524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.956 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.857 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.521 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.8538 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.755 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.8547 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.682 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.8958 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.496 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.8624 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.467 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.7925 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.884 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7666 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.453 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.7623 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.769 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7226 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7238 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.976 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.7101 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.956 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.6988 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.673 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1155 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1199220 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -263.245 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -266.673 -270.409 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -266.673 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.683 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.71 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.6885 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.394 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7046 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.398 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.7097 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.288 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.6566 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.301 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.6725 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.076 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.6535 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.116 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.6319 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.754 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.6371 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.12 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.649 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.456 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.6673 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.362 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.6093 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.935 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.4557 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -262.368 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.1145 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.542 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.2041 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.873 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.2011 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.379 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.2066 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.369 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.211 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.424 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.2076 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.323 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1154 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1186508 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -264.323 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -264.323 -270.409 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -264.323 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.2383 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.283 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.1992 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.271 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.214 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.976 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.2145 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.855 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.2225 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.334 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.2702 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.045 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 9.20391 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.097 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 9.19209 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.525 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 9.19802 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.421 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 9.19362 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.896 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 9.19143 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.41 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 9.20587 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.724 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 9.14436 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.997 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 9.13389 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.15 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 9.12839 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.273 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 9.14326 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.662 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1124 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1154492 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -268.665 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -268.665 -270.409 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -268.665 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 2 -270.409 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.8514 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.635 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.8516 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.624 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.7982 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.982 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.8046 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.134 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.8646 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.635 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.8618 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.518 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.8883 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 11.0115 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.637 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 11.0052 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.442 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 11.0365 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.913 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.951 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.106 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1374 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1553128 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -269.108 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -269.108 -270.637 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -269.108 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.9483 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.829 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.9531 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.153 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.9513 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.139 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.948 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.169 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.9015 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.779 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.842 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.048 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.8504 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.525 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.849 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.628 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.8478 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.582 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.776 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.06 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.7827 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.086 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7117 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.827 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.7204 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.029 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.7365 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.073 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7284 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.027 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.6358 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.04 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.5234 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.496 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.5307 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.367 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1099 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1097932 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -268.196 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -268.367 -270.637 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -268.367 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.5294 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.56 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.5277 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.341 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7289 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.821 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.6808 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.039 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.7587 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.571 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.8563 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.846 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7193 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.612 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7096 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.354 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.7081 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.39 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7136 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.332 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.7207 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.972 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.717 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.645 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.7247 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.001 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7243 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.96 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1497 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1951028 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -268.755 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -268.96 -270.637 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -268.96 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.7297 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.759 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7401 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.384 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7949 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.266 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.8021 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.476 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.8036 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.724 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.8075 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.767 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.8632 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.495 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.8565 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.277 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.8669 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.697 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.8603 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.566 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.861 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.034 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.8427 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.403 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.8575 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.769 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1468 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1847660 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -269.561 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -269.561 -270.637 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -269.561 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.8615 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.637 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.8663 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.283 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.8633 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.23 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.859 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.472 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.8692 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.303 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.8899 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.793 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.8947 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.817 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7852 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.925 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.7754 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.379 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.7747 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.101 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7493 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.817 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1353 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1459088 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -268.817 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -268.817 -270.637 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -268.817 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.7387 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.656 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7003 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.332 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.7119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.208 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7014 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.818 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.6943 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.089 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.6961 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.162 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.6973 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.238 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.8128 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.105 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.8202 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.243 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.8175 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.022 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7843 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.66 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.7788 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.803 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7784 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.714 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7215 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.774 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7161 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.84 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.6726 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.212 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.6998 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.175 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7011 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.268 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1330 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1473360 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -268.268 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -268.268 -270.637 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -268.268 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7078 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.207 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.7179 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.046 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7206 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.214 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.7158 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.357 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.716 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.151 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7236 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.649 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.7896 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.365 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7883 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.294 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.815 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.83 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.8193 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.874 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.8154 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.151 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.7959 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.926 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.7939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.539 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.798 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.443 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1326 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1462420 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -269.443 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -269.443 -270.874 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -269.443 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 3 -270.874 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.8206 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.75 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.8212 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.397 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.8775 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.734 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.8824 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.855 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.8836 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.278 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.8359 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.025 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.8355 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.956 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.9221 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.189 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.829 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.157 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.8152 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.048 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.8133 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.309 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.8074 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.096 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.7025 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.927 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1522 rotamers at 51 positions. core.pack.pack_rotamers: IG: 2000108 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -267.306 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -269.927 -270.874 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -269.927 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 11.1927 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.55 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 11.2047 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.868 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 11.2061 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.766 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 11.0704 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.187 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 11.0978 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.824 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 11.0875 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.595 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.9782 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.739 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.9865 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.932 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.9421 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.89 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.6728 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.059 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.5148 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.883 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.5183 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.939 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1555 rotamers at 51 positions. core.pack.pack_rotamers: IG: 2113560 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -267.939 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -267.939 -270.874 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -267.939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.5142 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.391 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.5153 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.244 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.5218 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.098 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.5374 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.961 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.5359 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.202 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.5063 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.442 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.5183 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.4576 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.279 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.4598 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.14 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 11.6369 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.937 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 11.8255 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.933 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 11.8353 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.752 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 11.8254 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.331 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 11.8248 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.465 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 11.7956 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.95 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 11.8025 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.866 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 11.7811 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.459 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1219 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1171092 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -264.459 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -264.459 -270.874 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -264.459 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 11.7795 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.78 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 11.5382 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.588 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 11.575 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.274 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 11.2554 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.118 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 11.249 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.922 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 11.2418 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 11.2429 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.684 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 11.444 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.574 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 11.4479 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.936 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 11.4489 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.55 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 11.4712 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.776 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 11.4547 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.749 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 11.4422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.541 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1286 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1399796 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -267.541 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -267.541 -270.874 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -267.541 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 11.4453 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.95 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 11.4568 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.806 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 11.4604 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.776 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 11.159 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.752 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 11.172 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.102 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 11.1713 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.325 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 11.1736 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.57 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 11.1736 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.555 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 11.1585 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.03 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 11.1672 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.024 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 11.1708 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.03 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 11.1699 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.85 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 11.1663 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.958 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 11.2709 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.915 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 11.2752 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.06 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 11.2756 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.053 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 11.2775 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.239 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 11.2694 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.04 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 11.388 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.342 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 11.3805 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.352 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 11.2957 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.426 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 11.3539 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.378 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1048 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1008852 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -265.102 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -267.378 -270.874 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -267.378 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 11.3143 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.287 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 11.3118 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.418 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 11.3316 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.712 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.6643 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.041 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.6653 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.391 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.6778 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.369 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.6747 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.306 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.6806 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.329 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.5833 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.254 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.5558 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.102 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.5477 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.863 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.546 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.098 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.5514 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.07 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.5548 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.546 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.5322 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.138 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.5144 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.277 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.5377 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.011 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1246 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1353728 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -265.253 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -268.011 -270.874 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -268.011 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.5309 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.13 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 9.67053 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.287 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 9.40382 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.84 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.2298 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.156 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.2196 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.011 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.1783 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.5618 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.167 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.5662 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.029 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.5785 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.21 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 10.5721 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.899 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 10.6286 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.964 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1304 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1388848 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -270.964 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -270.964 -271.21 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -270.964 protocols.moves.TrialCounter: kic_refine_r1 trials= 391; accepts= 0.4322; energy_drop/trial= 0.01331 protocols.moves.TrialCounter: kic_refine_r2 trials= 396; accepts= 0.4268; energy_drop/trial= -0.04706 protocols.moves.TrialCounter: repack trials= 22; accepts= 0.6818; energy_drop/trial= -1.03363 antibody2.AntibodyUtil: Utility: Checking Kink/Extended CDR H3 Base Angle antibody2.AntibodyUtil: Base Dihedral: -176.077 antibody2.AntibodyUtil: Utility: Finished Checking Kink/Extended CDR H3 Base Angle: 0 protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 3 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1221 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1357284 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -254.55 -254.55 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -254.55 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 0.326709 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -253.103 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 0.347597 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -253.288 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 0.458209 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -255.809 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 0.463101 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -255.365 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 0.45312 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -256.907 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 0.431021 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -257.011 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 0.425647 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -256.737 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 0.401819 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -256.425 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 0.413957 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -256.928 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 0.422285 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -256.868 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.1976 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -262.604 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.20662 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -262.168 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.02185 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -262.225 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7042 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.889 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.88766 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.509 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.88059 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.553 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.06179 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.336 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1203 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1313812 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -269.024 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -269.024 -269.024 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -269.024 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.05071 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.75 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.02687 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.949 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.63285 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.642 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.63981 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.448 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65284 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.234 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.64496 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.46 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73823 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.728 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75966 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.255 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.44564 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.528 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74478 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.311 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76652 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.283 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.85712 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.754 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.79671 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.527 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.80672 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.403 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.89595 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.094 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1235 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1294704 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -272.334 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -272.334 -273.754 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -272.334 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.92576 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.321 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81949 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.797 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81801 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.901 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.81989 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.859 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68183 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.224 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.63348 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.666 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63272 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.168 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.56927 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.995 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.56661 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.312 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74165 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.117 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.71251 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.983 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.77918 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.818 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76906 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.095 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77852 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.061 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.77253 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.662 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77302 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.549 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.84763 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.032 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1238 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1376276 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -273.036 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -273.036 -275.995 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -273.036 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.14717 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.268 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.11343 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.326 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.15143 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.087 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.11842 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.339 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.12919 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.264 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.07803 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.617 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.06713 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.825 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.09777 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.744 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.08858 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.634 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.0885 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.689 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.09208 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.39 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.07214 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.43 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.08148 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.647 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.9303 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.367 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.92848 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.342 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1241 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1362256 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -275.927 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -275.927 -276.367 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -275.927 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.92483 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.978 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.90554 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.072 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.07386 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.63 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75168 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.516 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75374 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.788 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7376 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.761 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.72314 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.035 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.64475 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.269 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.6773 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.052 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66747 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.818 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68923 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.302 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67306 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.64582 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.972 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80115 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.185 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.8739 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.139 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.85395 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.85 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.83063 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.502 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.84159 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.606 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.83971 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.729 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1307 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1596140 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -275.729 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -275.729 -276.788 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -275.729 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.48551 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.89 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.55745 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.56551 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.455 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.58461 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.321 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.57802 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.758 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.71642 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.677 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80127 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.777 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75974 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.507 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.90345 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.222 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.91253 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.183 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.91597 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.744 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.90895 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.272 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.90636 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.185 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.88705 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.588 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1306 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1523612 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -279.592 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -279.592 -279.592 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -279.592 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.88979 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.526 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.89058 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.804 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.66908 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.449 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69606 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.072 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.66493 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.127 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67194 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.502 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.77757 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.863 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.77922 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.231 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81037 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.949 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.84038 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.61 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.8718 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1355 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1524572 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -277.144 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -277.144 -279.804 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -277.144 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 2 -279.804 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.88279 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.771 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.87098 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.328 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.87383 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.162 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.86654 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.878 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.88856 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.034 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.864 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.653 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.84872 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.334 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.84194 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.811 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.85543 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.84663 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.236 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.89593 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.969 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.88584 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.048 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1295 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1471788 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -280.048 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -280.048 -280.048 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -280.048 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.88301 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.017 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.02467 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.831 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.03584 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.991 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.05131 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.926 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.08563 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.042 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.09736 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.242 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.88905 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.023 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.98382 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.71 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1314 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1505700 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -283.711 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -283.711 -283.711 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -283.711 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.9705 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.838 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.02123 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.228 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.00108 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.821 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.00649 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.681 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.12209 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.913 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.98528 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.99387 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.646 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.98989 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.932 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.99164 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.441 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.97245 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.409 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1287 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1433292 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -282.409 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -282.409 -283.753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -282.409 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.98991 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.266 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.02209 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.619 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.9736 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.189 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.99182 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.327 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.96572 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.347 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.96964 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.745 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.96704 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.256 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.96914 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.311 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.97191 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.112 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.96547 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.977 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.97239 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.347 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.9668 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.041 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7882 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.716 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1255 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1374552 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -279.807 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -279.807 -283.753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -279.807 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78814 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.812 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.78847 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.824 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.79395 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.619 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79196 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.666 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.8319 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.725 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81922 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.456 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.81789 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.076 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80838 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.516 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.8115 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.385 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.6655 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.014 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.67362 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.9 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74892 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.072 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63531 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.251 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72107 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.109 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1326 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1572464 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -281.109 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -281.109 -283.753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -281.109 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.71857 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.672 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.70124 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.386 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.68726 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.204 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68771 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.141 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.6941 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.536 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62346 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.804 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62413 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.966 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62695 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.911 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62671 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.523 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59644 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.682 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60334 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.268 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63833 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.3 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61575 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.824 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.51358 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.257 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1285 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1487384 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -280.318 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -280.318 -283.753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -280.318 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.50584 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.997 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.51342 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.273 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.50795 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.611 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.46712 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.69 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.48825 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.264 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.48921 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.332 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.48921 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.023 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1213 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1301476 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -279.023 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -279.023 -283.753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -279.023 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 3 -283.753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.99303 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.99632 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.49 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.99398 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.997 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.99946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.902 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.01079 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.59 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.01454 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.795 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.02373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.01591 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.411 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.02078 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.218 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.0159 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.033 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.01326 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.063 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.0122 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.063 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1261 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1349680 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -280.063 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -280.063 -283.753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -280.063 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.87356 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.583 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.88271 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.742 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.88863 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.646 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.8936 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.235 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.89504 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.094 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.93907 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.62 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.98819 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.82 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.04336 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.001 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.06476 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.83 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1311 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1529768 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -280.929 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -280.929 -283.753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -280.929 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.08112 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.971 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.09176 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.001 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.09247 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.933 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.0916 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.902 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.99007 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.085 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.00978 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.971 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.99401 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.657 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.12055 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.811 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.11332 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.867 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.09957 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.952 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1324 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1503604 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -283.204 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -283.204 -283.753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -283.204 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.11487 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.211 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.10885 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.339 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.0958 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.733 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.08925 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.544 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.11223 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.632 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.08794 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.037 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.088 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.304 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.09587 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.466 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.07485 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.689 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.39943 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.579 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.35783 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.339 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1312 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1536660 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -282.339 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -282.339 -283.753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -282.339 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.35182 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.003 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.35485 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.832 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.33792 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.387 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.0953 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.969 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.09376 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.556 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.09098 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.532 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.99421 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.53 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.01762 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.868 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.0027 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.244 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.00561 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.41 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.98465 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.228 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.99835 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.048 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1280 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1423272 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -282.048 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -282.048 -283.753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -282.048 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.99202 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.99941 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.173 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.99044 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.449 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.98039 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.368 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.98011 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.42 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.94941 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.899 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.95612 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.931 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.96459 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.843 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.97602 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.826 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1316 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1514080 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -280.826 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -280.826 -283.753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -280.826 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.97026 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.912 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.977 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.106 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.08145 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.468 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.08326 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.532 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.07839 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.585 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.05836 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.658 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.0268 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.598 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.03441 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.073 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1334 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1540928 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -282.093 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -282.093 -283.753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -282.093 protocols.moves.TrialCounter: kic_refine_r1 trials= 382; accepts= 0.3639; energy_drop/trial= 0.02482 protocols.moves.TrialCounter: kic_refine_r2 trials= 378; accepts= 0.3122; energy_drop/trial= -0.07492 protocols.moves.TrialCounter: repack trials= 22; accepts= 1.0000; energy_drop/trial= -1.10212 antibody2.AntibodyUtil: Utility: Checking Kink/Extended CDR H3 Base Angle antibody2.AntibodyUtil: Base Dihedral: 116.994 antibody2.AntibodyUtil: Utility: Finished Checking Kink/Extended CDR H3 Base Angle: 0 protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 4 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1221 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1357284 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -254.55 -254.55 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -254.55 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 0.350837 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -253.648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 0.342629 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -253.863 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 0.332177 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -254.203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 0.364724 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -252.416 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.2434 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -261.559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.22855 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -261.094 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.23942 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -261.694 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.13688 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -260.988 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.10172 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.336 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.12486 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.529 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.11869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.17252 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.397 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.25318 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.457 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.23865 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.9 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.33851 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.758 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.37027 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.64 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.36795 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.558 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.37466 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.742 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.36426 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.577 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.85767 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -261.497 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.58187 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.036 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1247 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1289112 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -265.152 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -265.152 -265.529 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -265.152 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.72113 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.474 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.69605 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.19 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.70896 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.582 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.36792 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.154 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.67443 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.531 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.66421 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.507 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.6848 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.452 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.68448 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.401 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.68613 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.213 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.67865 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.907 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.68748 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.782 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.53898 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.907 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.53679 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.484 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.55077 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.037 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.43112 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.154 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.44398 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.002 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1088 rotamers at 51 positions. core.pack.pack_rotamers: IG: 950032 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -271.002 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -271.002 -272.531 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -271.002 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.43096 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.806 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.42152 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.658 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.40987 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.228 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.69995 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.011 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.68297 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.539 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.68282 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.028 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.68559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.191 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.69126 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.558 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.67324 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.682 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.69116 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.47 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.68186 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.443 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.68757 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.617 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.69603 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.82 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.67504 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.579 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.7215 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.784 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.7024 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.919 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.71866 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.116 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.71642 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.888 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.71668 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.85 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.72737 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.806 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1110 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1125084 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -268.806 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -268.806 -272.82 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -268.806 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.71373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.973 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.71102 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.366 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.66003 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.435 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.60944 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.982 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.59324 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.54 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.55879 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.55812 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.394 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.60958 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.783 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.78623 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.953 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.76255 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.599 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1144 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1108444 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -270.694 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -273.599 -274.422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -273.599 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.79607 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.284 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.77939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.341 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.81589 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.32 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.79842 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.145 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.78163 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.913 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.78278 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.582 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.80907 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.581 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.79141 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.03 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.81022 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.342 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1132 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1100704 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -274.345 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -274.345 -274.422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -274.345 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.78911 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.228 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.80261 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.218 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.78262 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.109 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.79556 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.692 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.79278 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.83288 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.432 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.77514 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.636 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.78803 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.836 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1141 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1113736 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -273.836 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -273.836 -274.422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -273.836 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.77776 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.97 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.80279 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.051 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.78815 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.83 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.8015 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.745 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.78244 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.79617 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.11 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.79438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.634 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.71111 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.911 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.6931 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.465 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.87619 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.267 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.66371 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.762 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1318 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1342460 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -271.306 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -271.306 -274.422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -271.306 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 2 -274.422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.56789 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.045 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.56767 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.622 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.47621 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.825 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.47716 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.877 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.47017 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.51 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.44619 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.865 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.48732 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.219 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.47578 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.732 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.45411 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.324 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.44128 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.31 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.44666 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.053 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.54233 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.891 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.4621 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.926 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1106 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1091920 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -273.133 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -273.133 -274.422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -273.133 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.45636 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.866 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.45513 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.447 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.46186 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.954 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.45772 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.507 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.66611 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.87 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.58624 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.013 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.5786 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.263 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.31248 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.553 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.28873 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.054 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.35195 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.979 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.31861 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.635 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.33512 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.811 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.53611 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.886 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.43652 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.859 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1155 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1142572 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -270.583 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -273.859 -274.422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -273.859 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.42472 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.603 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.44853 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.306 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.44269 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.896 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.44317 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.231 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.56143 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.212 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.58071 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.123 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.58462 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.557 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.55377 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.711 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.55623 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.122 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.55982 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.104 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.56372 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.639 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1180 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1195928 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -272.639 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -272.639 -274.422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -272.639 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.45397 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.895 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.57551 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.889 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.58519 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.322 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.59677 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.325 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.6318 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.782 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.63724 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.64287 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.825 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.63003 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.661 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.64369 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.665 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1113 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1135452 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -275.665 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -275.665 -275.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -275.665 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.64824 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.64369 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.541 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.64598 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.209 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.65078 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.136 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.63187 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.958 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.6382 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.569 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.59426 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.443 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.58261 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.315 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.60399 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.219 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.59003 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.235 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1113 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1140832 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -273.235 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -273.235 -275.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -273.235 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.59647 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.569 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.62625 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.377 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.64788 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.903 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.63669 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.99 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.64438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.027 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.63251 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.221 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.62865 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.155 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.63083 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.966 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.63398 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.086 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.63702 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.575 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.64222 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.986 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.49592 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.985 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.52609 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.948 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.51425 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.624 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1113 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1132920 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -274.624 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -274.624 -275.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -274.624 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.50489 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.652 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.49898 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.664 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.4859 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.633 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.47196 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.669 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.45151 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.395 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.45553 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.432 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.45441 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.806 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.43788 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.654 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.45196 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.927 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.44542 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.902 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.56395 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.948 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.56659 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.094 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1127 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1176312 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -273.094 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -273.094 -275.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -273.094 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 3 -275.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.6258 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.823 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.62222 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.766 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.62153 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.947 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.62422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.545 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.62381 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.208 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.62312 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.707 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.59496 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.269 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.59866 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.127 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.59034 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.59374 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.781 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.6001 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.239 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.62128 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.257 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.63941 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.64895 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.201 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1141 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1203664 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -273.201 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -273.201 -275.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -273.201 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.65822 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.587 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.67159 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.045 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.12434 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.578 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.12079 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.699 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.12091 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.67 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.13753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.007 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.13416 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.817 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.13795 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.978 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.13758 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.798 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1166 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1180168 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -273.798 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -273.798 -275.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -273.798 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.14267 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.603 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.14404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.808 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.14124 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.087 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.14218 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.033 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.11469 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.965 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.11915 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.311 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.13969 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.636 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.13081 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.363 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.12946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.665 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.12984 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.613 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.13299 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.432 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1351 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1442128 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -268.999 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -271.432 -275.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -271.432 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.13074 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.267 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.13457 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.38 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.12853 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.918 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.12992 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.012 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.13244 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.159 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1350 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1429296 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -273.159 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -273.159 -275.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -273.159 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.13163 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.19 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.1288 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.222 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.12925 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.561 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.14272 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.531 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.13762 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.844 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.12438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.066 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.11824 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.26 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.11634 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.25 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.11474 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.058 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1140 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1117576 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -272.058 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -272.058 -275.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -272.058 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.11114 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.985 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.13687 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.782 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.13982 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.922 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.19552 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.424 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.19353 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.596 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.20163 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.449 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.20255 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.926 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1149 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1141944 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -273.926 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -273.926 -275.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -273.926 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.02368 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.99 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.02286 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.196 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.05008 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.024 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.03316 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.039 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.03572 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.365 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.03639 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.39 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.11656 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.48 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.11293 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.956 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.11155 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.721 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.10167 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.748 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.09724 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.79 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.1047 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.786 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1232 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1334004 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -274.844 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -274.844 -275.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -274.844 protocols.moves.TrialCounter: kic_refine_r1 trials= 398; accepts= 0.3116; energy_drop/trial= 0.01115 protocols.moves.TrialCounter: kic_refine_r2 trials= 388; accepts= 0.3119; energy_drop/trial= -0.04597 protocols.moves.TrialCounter: repack trials= 22; accepts= 0.8636; energy_drop/trial= -1.08458 antibody2.AntibodyUtil: Utility: Checking Kink/Extended CDR H3 Base Angle antibody2.AntibodyUtil: Base Dihedral: -142.98 antibody2.AntibodyUtil: Utility: Finished Checking Kink/Extended CDR H3 Base Angle: 0 protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1221 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1357284 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -254.55 -254.55 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -254.55 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.96347 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -255.844 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.61399 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -257.869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.65964 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -259.214 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.38313 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -259.57 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.76756 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.518 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.65944 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.358 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.1675 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.762 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.1881 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.095 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.59241 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.967 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.71437 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.257 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.06759 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.624 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.26507 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.965 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.1945 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.058 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.35344 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.09606 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.424 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1097 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1126384 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -272.245 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -272.245 -272.722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -272.245 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.08694 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.162 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.10867 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.619 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.10216 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.665 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.11062 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.833 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.12135 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.037 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.0971 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.705 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.105 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.466 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.09249 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.425 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.24641 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.433 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.28891 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.56 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.37898 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.135 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.38916 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.244 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.37727 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.372 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.3865 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.2 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.37193 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.17 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1157 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1166580 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -274.17 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -274.17 -274.372 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -274.17 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.28762 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.848 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.28914 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.811 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.28118 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.801 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.29386 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.035 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.36861 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.936 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.38729 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.687 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.41342 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.397 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.36252 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.841 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.3854 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.298 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.29727 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.98 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.29698 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.651 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.34445 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.711 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.40108 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.376 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.34628 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.139 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.37195 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.891 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.40369 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.902 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1291 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1424416 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -274.902 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -274.902 -275.139 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -274.902 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.36281 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.145 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.35012 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.423 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.36191 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.51 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.35854 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.478 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.36605 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.499 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.36258 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.424 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.37333 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.872 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.35524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.66 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.39399 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.103 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.25324 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.172 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.24539 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.697 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1244 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1262748 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -275.697 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -275.697 -276.66 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -275.697 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.56249 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.111 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.56348 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.252 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.59705 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.705 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.62993 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.623 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.6081 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.067 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.61915 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.012 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.60817 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.957 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.61852 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.752 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.59766 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.845 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.61513 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.143 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.59374 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.179 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.57508 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.5512 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.493 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.48167 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.402 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.47481 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.934 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.48307 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.817 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.42374 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.79 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.538 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.942 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.36616 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.866 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.31586 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.073 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.00601 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.989 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1141 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1161940 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -272.049 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -272.049 -276.66 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -272.049 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.00065 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.093 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.05001 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.834 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.02752 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.235 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.07608 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.567 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.07518 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.346 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.07709 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.078 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.08187 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.034 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.21494 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.793 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.24543 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.369 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.23942 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.245 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.27778 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.265 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.2714 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.078 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.26623 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.137 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1138 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1147316 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -277.137 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -277.137 -277.265 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -277.137 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.25901 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.027 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.25905 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.821 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.26112 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.352 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.25306 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.027 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.26687 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.383 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.1784 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.177 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.18324 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.441 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.24418 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.029 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.22693 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.756 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.21873 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.838 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.22518 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.465 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.2219 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.472 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.23764 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.788 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.23534 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.502 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1131 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1129492 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -276.502 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -276.502 -278.029 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -276.502 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 2 -278.029 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.19117 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.972 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.19938 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.602 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.20741 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.145 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.18308 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.469 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.1788 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.57 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.24943 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.787 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.24819 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.678 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.25746 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.482 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.24795 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.395 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1075 rotamers at 51 positions. core.pack.pack_rotamers: IG: 959532 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -276.395 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -276.395 -278.972 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -276.395 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.22593 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.948 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.21938 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.955 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.6633 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.278 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.66104 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.162 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.68877 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.222 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.70371 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.62 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.69504 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.155 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.69434 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.147 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.69505 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.269 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.7018 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.337 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.69964 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.537 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.68195 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.297 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.68233 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.238 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1066 rotamers at 51 positions. core.pack.pack_rotamers: IG: 942764 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -273.238 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -273.238 -278.972 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -273.238 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.69267 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.676 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.64999 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.277 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.64567 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.322 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.67312 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.032 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.67594 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.131 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.635 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.012 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.62834 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.098 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.6511 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.451 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.67471 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.48 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.68875 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.977 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.6877 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.987 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.67119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.338 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.6755 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.026 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1100 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1008480 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -279.026 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -279.026 -279.338 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -279.026 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.6731 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.027 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.69885 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.205 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.6924 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.548 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.69258 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.397 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.69482 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.984 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.68935 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.961 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.70098 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.68 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.58405 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.855 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.5724 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.639 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.57678 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.815 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.58008 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.976 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1136 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1143504 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -278.976 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -278.976 -279.338 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -278.976 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.57613 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.928 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.56991 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.027 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.58416 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.63352 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.207 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.63167 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.486 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.63126 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.202 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.62868 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.091 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.63509 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.638 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.63717 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.582 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.633 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.762 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1154 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1177880 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -280.762 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -280.762 -281.207 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -280.762 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.63629 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.747 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.63115 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.857 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.63589 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.572 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.61364 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.419 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.5533 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.25 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.5511 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.231 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.63163 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.54 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.63157 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.793 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.63649 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.806 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.62947 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.365 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.62889 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.173 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.49251 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.412 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.58529 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.715 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.58769 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.815 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1145 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1155340 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -279.825 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -279.825 -281.207 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -279.825 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.58553 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.771 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.58539 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.581 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.58594 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.095 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.65814 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.187 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.65537 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.09 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.65872 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.797 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.6574 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.898 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.65679 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.265 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1138 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1148356 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -280.265 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -280.265 -281.207 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -280.265 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 3 -281.207 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.65229 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.826 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.64935 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.717 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.29391 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.002 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.31478 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.552 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.3049 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.3 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.29594 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.533 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.29862 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.744 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.31183 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.023 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.27537 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.926 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.27623 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.455 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.26861 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.555 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.26707 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.552 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.2661 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.724 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.27315 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.219 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1369 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1572900 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -278.219 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -278.219 -281.207 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -278.219 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.26562 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.281 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.26466 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.228 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.27022 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.25 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.25527 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.515 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.25731 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.817 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.2641 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.937 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.36811 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.928 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.35516 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.254 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.34586 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.893 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.33829 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.688 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.3349 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.239 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1373 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1588084 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -277.239 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -277.239 -281.207 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -277.239 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.34118 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.183 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.33986 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.938 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.4238 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.661 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.41975 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.36583 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.329 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.35926 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.186 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.37159 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.996 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.37058 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.484 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.37426 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.7 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.36218 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.87 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.34493 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.99 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.36415 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.553 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1380 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1609648 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -279.553 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -279.553 -281.207 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -279.553 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.37399 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.428 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.37751 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.178 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.37158 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.319 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.37668 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.917 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.37418 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.248 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.36291 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.344 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.36137 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.419 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.36552 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.24 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.34912 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.659 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.44136 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.464 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.43804 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.565 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.44166 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.604 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.44453 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.419 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.44575 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.346 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1181 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1291328 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -279.353 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -279.353 -281.207 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -279.353 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.44454 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.339 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.44697 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.246 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.44685 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.303 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.44686 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.449 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.4451 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.259 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.449 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.176 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.45562 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.967 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.45552 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.298 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1186 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1305084 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -278.298 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -278.298 -281.207 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -278.298 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.45941 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.426 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.45978 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.68 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.45848 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.574 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.4902 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.081 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.49162 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.74 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.48674 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.711 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.49067 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.106 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.49125 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.016 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.49569 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.43 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.49544 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.458 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.4941 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.507 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.49303 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.518 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.49414 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.327 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1201 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1355544 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -278.327 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -278.327 -281.207 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -278.327 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.47304 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.355 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.47154 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.326 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.47619 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.144 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.47643 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.84 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.47406 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.897 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.48009 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.07 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.47475 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.624 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.47514 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.643 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.47436 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.659 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.63513 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.534 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1190 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1312992 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -279.534 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -279.534 -281.207 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -279.534 protocols.moves.TrialCounter: kic_refine_r1 trials= 377; accepts= 0.3475; energy_drop/trial= -0.02419 protocols.moves.TrialCounter: kic_refine_r2 trials= 393; accepts= 0.3410; energy_drop/trial= -0.03435 protocols.moves.TrialCounter: repack trials= 22; accepts= 1.0000; energy_drop/trial= -1.03767 antibody2.AntibodyUtil: Utility: Checking Kink/Extended CDR H3 Base Angle antibody2.AntibodyUtil: Base Dihedral: -133.351 antibody2.AntibodyUtil: Utility: Finished Checking Kink/Extended CDR H3 Base Angle: 0 protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 6 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1221 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1357284 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -254.55 -254.55 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -254.55 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 0.309141 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -254.05 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 0.310889 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -253.395 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 0.32247 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -253.054 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 0.355688 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -255.284 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.30077 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -253.082 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.3049 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -253.494 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.27597 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -253.344 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.25567 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -254.227 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.38042 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -256.592 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.87298 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -256.519 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.84651 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -258.938 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.85059 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -259.32 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.85091 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -259.09 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.88017 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.681 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.97542 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.396 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.9914 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.116 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.00726 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.024 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.99904 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.229 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.33941 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.41 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.23289 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.737 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.04479 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -261.058 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.08746 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.741 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.10178 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -262.828 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.09185 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -262.526 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.60827 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -261.927 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.58532 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -262.913 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.39723 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.384 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1247 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1394588 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -263.324 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -263.324 -273.229 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -263.324 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.41544 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -262.028 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.43716 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -261.422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.32743 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -262.785 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.46864 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.296 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.49202 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.169 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.4515 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.212 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.43723 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.06 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.43791 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.77 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.48874 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.081 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.39346 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.172 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.27498 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.36 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.26009 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.391 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.28527 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.333 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1063 rotamers at 51 positions. core.pack.pack_rotamers: IG: 963552 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -267.333 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -267.333 -273.229 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -267.333 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.28818 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.321 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.24627 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.24619 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.016 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.14318 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.416 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.17596 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.184 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.44927 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.781 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.40838 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.229 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.38283 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.964 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.40848 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.199 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.38896 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.98 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.54153 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.294 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.59758 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.75 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.5909 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.768 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.72059 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.084 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.7226 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.434 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1172 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1138940 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -275.434 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -275.434 -275.434 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -275.434 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.7098 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.063 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.72137 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.057 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.71104 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.816 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.73733 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.006 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.72656 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.478 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.60693 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.477 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.5984 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.302 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.61 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.675 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.60128 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.93 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.69315 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.039 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.68889 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.378 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1190 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1194808 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -273.378 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -273.378 -275.434 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -273.378 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.70256 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.152 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.69509 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.311 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.68783 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.905 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.68684 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.244 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.65089 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.189 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.66063 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.976 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.64295 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.62 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.72484 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.672 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.73258 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.138 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.72812 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.906 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.77179 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.725 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.76456 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.326 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.77836 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.125 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.77608 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.872 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1174 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1136184 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -270.872 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -270.872 -275.434 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -270.872 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.76683 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.851 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.78512 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.597 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.48567 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.19 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.91148 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.981 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.90669 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.903 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.92644 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.7 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.91775 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.037 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.94444 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.582 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.93958 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.619 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.9144 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.585 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.88557 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.918 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.88226 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.942 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.97654 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.825 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1192 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1194440 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -273.852 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -273.852 -275.434 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -273.852 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.96219 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.735 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.26228 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.135 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.23332 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.899 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.22203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.992 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.31143 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.78 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.96151 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.091 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.92262 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.448 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.90555 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.956 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.91659 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.792 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.90358 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.766 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.84955 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.949 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.86869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.099 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.88506 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.642 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.81793 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.814 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.79556 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.907 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1162 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1124608 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -278.907 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -278.907 -278.907 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -278.907 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 2 -278.907 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76165 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.426 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.90921 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.142 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.89902 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.126 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.97803 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.446 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.96659 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.958 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.96767 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.059 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.90741 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.89 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.84875 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.427 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.85449 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.981 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.85305 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.528 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.85459 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.39 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1131 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1009936 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -277.39 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -277.39 -279.142 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -277.39 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.01493 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.775 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.01236 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.523 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.02152 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.432 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.03111 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.279 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.90751 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.416 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.81232 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.073 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72432 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.584 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72384 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.72537 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.813 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1174 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1134040 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -278.813 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -278.813 -279.142 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -278.813 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.78905 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.528 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.7924 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.436 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80558 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.164 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79211 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.234 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.79854 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.159 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80269 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.79515 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.625 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80843 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.837 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.03 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1157 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1092024 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -280.03 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -280.03 -280.528 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -280.03 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81278 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.087 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81392 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.85092 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.696 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.86506 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.554 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.85919 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.262 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.8557 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.374 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.87398 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.259 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.86182 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.357 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.85542 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.077 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75867 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.889 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77578 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.209 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77612 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.761 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1123 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1021660 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -279.761 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -279.761 -280.528 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -279.761 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80496 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.748 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.79538 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.519 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80148 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.471 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.80732 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.465 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80507 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.986 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.80668 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.088 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80845 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.451 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.79624 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.859 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.78976 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.594 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.85531 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.72 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1115 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1012084 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -276.034 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -276.034 -280.528 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -276.034 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.80353 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.424 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.80062 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.89 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79833 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.165 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.01437 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.665 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.00283 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.122 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.03892 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.736 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.97909 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.741 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.91773 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.215 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.91213 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.008 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.88838 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.465 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.90214 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.636 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.00641 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.152 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.01202 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.168 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.01283 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.711 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.00717 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.766 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1175 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1132472 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -278.766 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -278.766 -280.528 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -278.766 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.01043 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.519 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.00341 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.662 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.984 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.997 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.98156 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.906 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.98948 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.89 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.98877 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.887 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.98881 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.935 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.99544 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.156 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1181 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1132176 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -278.156 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -278.156 -280.528 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -278.156 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 3 -280.528 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.78412 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.432 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.80021 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.974 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79147 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.333 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.78652 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.455 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77468 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.455 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77085 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76464 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.781 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76608 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.627 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76878 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.202 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.7998 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.462 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78178 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.135 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1167 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1099088 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -278.135 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -278.135 -280.528 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -278.135 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.85973 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.428 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.86919 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.228 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.8652 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.088 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.84988 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.277 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.85811 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.94 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.88667 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.142 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.88454 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.25 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.88161 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.017 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.89304 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.978 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.87717 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.602 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.85579 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.925 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.86334 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.84581 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.606 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.84785 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.032 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.84754 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.259 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.9216 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.402 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.92188 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.836 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1137 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1057368 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -275.836 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -275.836 -280.528 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -275.836 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76758 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.874 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75867 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.928 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76431 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.682 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.72483 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.698 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73098 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.196 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.71331 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.698 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.72352 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.825 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76181 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.477 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75491 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.525 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.762 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.656 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1148 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1089004 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -279.656 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -279.656 -280.528 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -279.656 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.7673 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.128 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69503 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.367 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68888 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.311 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75859 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.162 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75891 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.464 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.74542 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.87 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.74986 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.122 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74632 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.259 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76286 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.468 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76988 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.453 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.79767 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.522 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1159 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1086108 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -278.586 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -278.586 -280.528 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -278.586 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.79453 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.805 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.80469 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.52 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.802 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.809 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.8114 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.606 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1166 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1091628 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -279.606 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -279.606 -280.528 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -279.606 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.80268 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.684 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79776 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.759 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.79755 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.526 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.8002 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.363 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79537 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.314 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.79113 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.063 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.804 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.421 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.78433 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.322 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.79857 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.643 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.79509 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.829 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.7923 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.933 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80328 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.332 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1158 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1089820 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -279.342 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -279.342 -280.528 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -279.342 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80771 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.411 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.80701 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.332 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80732 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.592 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.74258 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.413 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74156 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.689 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72658 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.428 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.73516 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.929 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73552 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.055 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.75 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73741 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.804 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74585 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.467 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76118 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.54 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75744 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.3 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.81966 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.117 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1136 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1058528 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -278.215 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -278.215 -280.528 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -278.215 protocols.moves.TrialCounter: kic_refine_r1 trials= 363; accepts= 0.3416; energy_drop/trial= 0.02234 protocols.moves.TrialCounter: kic_refine_r2 trials= 357; accepts= 0.3838; energy_drop/trial= -0.08109 protocols.moves.TrialCounter: repack trials= 22; accepts= 1.0000; energy_drop/trial= -1.06291 antibody2.AntibodyUtil: Utility: Checking Kink/Extended CDR H3 Base Angle antibody2.AntibodyUtil: Base Dihedral: 168.662 antibody2.AntibodyUtil: Utility: Finished Checking Kink/Extended CDR H3 Base Angle: 0 protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 7 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1221 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1357284 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -254.55 -254.55 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -254.55 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 0.333897 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -254.085 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 0.335939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -254.213 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 0.292311 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -256.095 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 0.351321 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -254.288 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 0.355123 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -255.928 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 0.457154 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -255.736 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 0.458066 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -253.232 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 0.441949 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -254.79 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 0.453104 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -254.44 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.3555 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -259.11 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.35635 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -259.757 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.22026 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -262.859 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.20526 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -262.62 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.22492 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -261.552 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.20132 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -260.575 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.75173 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.837 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.99381 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.312 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.02334 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.691 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.03257 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.612 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.03105 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.888 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.02927 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.599 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.1296 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.782 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.14937 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.96 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1210 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1264516 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -267.96 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -267.96 -269.888 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -267.96 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.13386 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.067 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.14316 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.691 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.12366 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.11129 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.255 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.14849 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.342 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.133 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.627 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.09694 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.09242 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.565 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.10133 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.063 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.14323 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.525 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.16664 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.352 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.15768 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.695 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.16636 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.181 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.06383 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.145 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.08923 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.395 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1271 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1405096 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -268.395 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -268.395 -269.888 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -268.395 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.06577 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.323 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.04969 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.021 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.05664 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.925 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.05205 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.738 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.06381 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.71 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.06339 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.757 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.06525 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.68 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.07114 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.364 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.04551 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.452 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.03915 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.912 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.994 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.303 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.03658 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.614 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.03024 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.921 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.03659 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.209 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.04701 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.863 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.00813 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.272 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.01019 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.517 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.02363 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.947 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.05142 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.75 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.03353 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.171 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1227 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1289980 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -269.171 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -269.171 -269.888 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -269.171 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.07327 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.123 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.05743 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.296 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.07803 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.601 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.08395 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.369 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.08837 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.55 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.08603 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.507 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.07223 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.012 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.01171 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.479 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.02828 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.744 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.0274 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.215 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.03254 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.229 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.02598 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.03718 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.644 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.0324 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.636 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1201 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1244112 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -271.553 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -271.553 -271.648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -271.553 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.01069 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.947 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.96562 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.831 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.94126 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.737 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.94869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.68 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.94566 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.63 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.90497 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.91244 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.846 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.92684 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.746 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.96243 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.518 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.9742 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.412 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.03544 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.151 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1204 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1251176 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -268.151 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -268.151 -272.119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -268.151 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.06084 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.921 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.05046 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.636 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.36491 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.075 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.34104 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.963 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.30822 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.166 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.32107 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.877 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.34675 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.021 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.37641 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.113 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.39373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.078 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.38867 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.149 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.42419 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.828 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.38848 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.823 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.38154 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.942 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.38117 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.676 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.40552 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.689 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1246 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1275784 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -263.998 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -264.689 -272.119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -264.689 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.40214 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.868 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.06501 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.137 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.03754 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.03645 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.149 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.94063 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.028 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.95774 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.214 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.01735 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.516 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.35312 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.661 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.40747 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.001 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.5916 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.593 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.49465 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.122 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.49151 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.526 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.59055 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.61 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.40686 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.372 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.45355 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.26 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.46511 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.077 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74312 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.284 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.25904 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.033 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.28084 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.583 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.29311 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.406 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1255 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1524984 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -272.406 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -272.406 -272.406 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -272.406 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 2 -272.406 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.28581 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.29 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.29885 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.148 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.28941 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.634 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75006 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74361 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.268 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74244 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.235 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75569 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.211 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.7406 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.246 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74872 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.492 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81755 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.041 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.649 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.8261 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.656 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.85863 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.013 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.8647 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.548 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.85822 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.764 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1212 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1331576 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -275.844 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -275.844 -276.656 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -275.844 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.85211 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.852 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.85991 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.875 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.85698 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.836 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.88579 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.794 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.87829 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.007 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.85701 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.154 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80472 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.565 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1227 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1364848 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -276.571 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -276.571 -277.154 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -276.571 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.00114 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.905 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.00729 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.862 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75351 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.3 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.95709 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.816 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.94409 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.188 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.97114 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.646 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.96146 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.098 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.9719 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.172 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.98045 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.294 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.96119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.905 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.97685 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.408 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1124 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1164516 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -275.435 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -275.435 -277.905 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -275.435 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.96649 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.85 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.1296 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.795 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.17461 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.214 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.18018 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.64 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.47961 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.301 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.48039 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.611 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.47331 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.118 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.47013 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.062 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.406 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.679 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.40307 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.641 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.4057 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.304 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.423 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.866 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.47727 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.64 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.44495 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.967 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.30312 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.109 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.27783 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.158 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.20038 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.335 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.20849 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.18 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.26307 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.83 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1071 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1010344 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -275.831 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -275.831 -277.905 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -275.831 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.40784 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.463 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.41791 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.66 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.42311 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.55 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.29805 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.288 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.29686 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.263 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.29635 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.599 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.32539 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.026 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.32283 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.054 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.32192 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.125 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.25561 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.569 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.25299 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.992 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.2513 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.296 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.26448 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.01 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.26201 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.486 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.25824 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.424 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.24614 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.87 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.24222 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.681 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.24066 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.571 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.28876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.798 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1191 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1268496 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -276.815 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -276.815 -277.905 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -276.815 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.28983 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.71 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.29121 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.03 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.277 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.808 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.26854 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.468 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.26077 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.522 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.35365 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.201 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.35151 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.467 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.3589 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.633 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.27078 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.854 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.27149 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.864 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.27382 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.201 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.2806 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.927 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.28414 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.972 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.27947 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.262 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.28006 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.27079 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.298 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.22534 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.677 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.26047 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.732 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1140 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1143356 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -276.776 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -276.776 -278.677 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -276.776 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.25977 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.645 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.26366 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.457 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.26248 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.192 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.26362 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.896 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.20372 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.18934 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.561 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.18302 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.825 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.22244 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.71 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.23562 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.409 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1127 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1118960 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -277.41 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -277.41 -278.677 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -277.41 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 3 -278.677 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.21892 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.73 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.21692 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.858 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.21627 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.834 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.19102 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.705 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.19603 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.024 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.2013 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.317 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.22749 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.033 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.21796 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.219 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.22674 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.621 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.24972 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.572 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.32648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.32 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.32409 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.04 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.31655 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.58 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.35758 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.414 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1081 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1023200 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -276.544 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -276.544 -278.858 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -276.544 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.36763 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.001 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.37205 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.813 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.35896 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.222 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.35121 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.398 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.32518 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.567 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.32492 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.049 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.32361 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.938 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.32034 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.36 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.32581 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.223 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.32253 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.192 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.31421 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.697 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.31044 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.615 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.29026 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.302 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.14883 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.649 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.14713 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.697 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.14344 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.244 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.15602 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.626 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.09656 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.101 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.09748 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.225 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1188 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1243152 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -275.25 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -275.25 -278.858 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -275.25 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.09105 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.02 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.08953 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.912 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.09415 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.56 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.08981 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.457 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.08754 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.112 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.87653 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.199 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.9491 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.281 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.94682 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.361 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.94927 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.426 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.94585 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.413 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.92133 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.93477 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.375 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.93013 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.446 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1220 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1337164 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -278.446 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -278.446 -278.858 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -278.446 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.94128 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.447 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.93971 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.371 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.98362 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.186 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.92664 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.322 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.94987 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.947 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.95709 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.14 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.94477 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.88 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.92937 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.828 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.90181 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.987 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.91418 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.762 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.90429 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.754 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.98076 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.941 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.98128 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.738 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.97841 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.368 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.98213 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.349 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1219 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1343820 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -278.349 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -278.349 -278.941 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -278.349 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.97214 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.483 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.97828 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.624 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.9402 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.653 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.93314 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.695 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.92919 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.111 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.92564 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.056 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.96215 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.96079 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.465 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.99386 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.843 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.99161 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.97221 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.769 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.95273 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.853 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.96423 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.208 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1186 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1247620 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -280.208 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -280.208 -280.769 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -280.208 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.765 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.985 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79049 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.963 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78572 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.653 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.69489 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.211 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69152 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.101 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.71805 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.436 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72538 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.721 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73083 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.081 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1240 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1406180 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -278.183 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -278.183 -280.769 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -278.183 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72496 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.933 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.72379 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.835 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.71448 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.538 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.71791 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.827 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.71222 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.783 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72988 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.776 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.72278 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.963 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.7211 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.283 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.72924 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.944 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.71521 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.118 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.70623 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.787 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.7131 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.348 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.71489 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.202 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7024 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.019 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1224 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1329840 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -278.214 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -278.214 -280.769 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -278.214 protocols.moves.TrialCounter: kic_refine_r1 trials= 385; accepts= 0.4026; energy_drop/trial= -0.06660 protocols.moves.TrialCounter: kic_refine_r2 trials= 392; accepts= 0.4005; energy_drop/trial= 0.00966 protocols.moves.TrialCounter: repack trials= 22; accepts= 0.9545; energy_drop/trial= -1.06709 antibody2.AntibodyUtil: Utility: Checking Kink/Extended CDR H3 Base Angle antibody2.AntibodyUtil: Base Dihedral: 123.507 antibody2.AntibodyUtil: Utility: Finished Checking Kink/Extended CDR H3 Base Angle: 0 protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 8 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1221 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1357284 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -254.55 -254.55 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -254.55 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.18119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -261.33 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.18829 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -261.435 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.16981 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -261.097 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.17468 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -261.229 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.15982 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -261.015 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.14492 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -261.059 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.15826 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -260.785 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.15646 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -261.037 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.14954 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -260.133 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.1955 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -260.9 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.20394 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -260.694 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.29013 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.424 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.68715 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.768 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.68842 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.968 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1246 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1422928 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -268.147 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -268.147 -268.147 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -268.147 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.71382 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.051 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.56741 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.922 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.29885 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.726 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.31117 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.035 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.26261 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.083 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.18551 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.18143 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.762 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.17542 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.013 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.18024 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.694 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.1433 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.354 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.15217 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.483 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.49872 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -262.953 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.4984 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.967 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.48402 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.758 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.37116 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.125 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.37489 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.818 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.25721 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.688 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.66293 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -262.566 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1101 rotamers at 51 positions. core.pack.pack_rotamers: IG: 942372 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -263.362 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -263.362 -273.051 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -263.362 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.91418 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.985 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.64087 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.701 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.61691 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.864 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.64843 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.279 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.62877 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.748 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.61392 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.77 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.59225 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.089 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.02065 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.33 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1218 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1267812 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -271.43 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -271.43 -273.051 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -271.43 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.01726 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.516 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.02331 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.517 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.03005 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.702 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.03227 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.493 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.0308 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.505 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.03283 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.995 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.03076 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.814 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.01592 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.712 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.06466 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.491 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.1849 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.202 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1252 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1309072 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -269.572 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -269.572 -273.051 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -269.572 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.21228 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.187 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.21162 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.122 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.27072 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.808 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.25415 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.217 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.25026 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.243 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.25367 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.336 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.06043 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.28 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.04556 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.761 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.22741 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.547 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.00023 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.581 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.0069 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.708 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.85148 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.283 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.85467 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.059 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.62826 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.83 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.6452 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.729 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1220 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1270344 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -265.729 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -265.729 -273.051 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -265.729 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.5897 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.658 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.60173 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.614 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.63503 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.17 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.61104 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.708 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.6114 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.584 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.60715 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.505 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.61085 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.182 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.60484 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.792 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.57877 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.951 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.57756 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.954 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.57839 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.319 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.57903 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.496 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.6524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.756 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.64519 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.443 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.64293 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.532 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.62854 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.884 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.62756 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.44 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1132 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1107732 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -267.44 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -267.44 -273.051 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -267.44 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.43939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.279 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.4093 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.167 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.41435 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.01 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.36441 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.689 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.3673 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.602 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.39284 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.667 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.29593 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.72 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.17951 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.527 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.20305 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.793 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.19754 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.528 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.2095 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.496 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.19961 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.856 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.86976 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.128 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.87176 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.724 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.09871 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.761 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1381 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1412520 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -270.81 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -270.81 -274.128 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -270.81 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 2 -274.128 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.88233 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.68 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.87402 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.481 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.97841 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.817 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.97896 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.181 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.98156 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.839 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.97962 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.214 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.75131 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.371 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.37161 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.516 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.38315 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.484 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.38437 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.615 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.37828 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.043 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.3767 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.478 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.36934 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.612 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.44352 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.444 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.43467 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.399 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.43872 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.982 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.25945 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.827 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1319 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1369556 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -273.991 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -273.991 -275.181 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -273.991 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.27616 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.005 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.1112 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.639 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.1422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.175 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.16039 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.862 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.14373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.18 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.15095 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.044 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.19962 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.726 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.19683 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.829 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.19934 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.875 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.19327 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.933 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.1959 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.757 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1323 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1389484 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -277.758 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -277.758 -277.933 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -277.758 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.20301 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.733 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.19698 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.052 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.20266 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.093 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.28071 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.226 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.3247 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.54 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.30794 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.565 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.30624 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.285 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.30003 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.228 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.28231 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.854 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.25109 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.307 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.25727 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.999 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.25459 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.058 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1273 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1195108 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -278.081 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -278.081 -279.565 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -278.081 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.29707 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.237 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.28866 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.24 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.29246 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.385 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.28289 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.242 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.29247 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.26544 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.765 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.25006 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.731 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1345 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1449132 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -281.731 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -281.731 -282.404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -281.731 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.24492 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.887 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.21328 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.269 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.2272 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.496 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.21818 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.343 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.2266 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.276 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.21451 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.126 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.20108 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.728 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.21299 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.964 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.23668 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.638 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.13805 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.853 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.17377 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.358 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.17796 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.822 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.17771 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.828 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1448 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1727460 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -279.828 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -279.828 -282.404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -279.828 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.18541 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.698 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.15661 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.628 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.14829 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.327 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.16695 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.683 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.16859 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.183 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.17463 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.036 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.16657 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.104 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.15706 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.918 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.1586 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.159 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.16694 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.61 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1443 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1648596 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -280.61 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -280.61 -282.404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -280.61 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.16827 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.894 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.1851 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.412 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.13148 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.429 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.13508 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.649 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.13963 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.874 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.1342 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.02 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.14085 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.688 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.1361 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.195 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1437 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1636060 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -281.195 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -281.195 -282.404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -281.195 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 3 -282.404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.2683 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.72 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.28168 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.519 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.28567 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.34 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.28782 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.12 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.22093 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.045 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.21822 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.879 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.06962 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.04 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.06223 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.794 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.07021 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.937 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.07576 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.887 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1377 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1561540 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -279.887 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -279.887 -282.404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -279.887 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.06727 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.898 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.07506 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.674 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.06983 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.07528 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.618 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.069 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.4 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.07206 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.264 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.06716 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.163 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.07107 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.12 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.06469 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.701 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.03013 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.468 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.06 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.549 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.01916 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.637 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.01898 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.37 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.01615 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.997 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.02967 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.329 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1366 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1531608 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -280.329 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -280.329 -282.404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -280.329 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.02949 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.328 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.03513 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.659 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.0124 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.721 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.00776 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.875 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.01596 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.657 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.01489 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.208 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.03449 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.06207 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.406 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.05614 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.427 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.06089 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.392 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.08037 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.909 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.0654 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.703 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1373 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1547184 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -280.703 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -280.703 -282.404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -280.703 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.08588 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.509 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.08873 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.147 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.09636 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.994 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.08317 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.357 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.97722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.728 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.98056 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.637 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.98345 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.597 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.10651 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.055 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.09535 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.795 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.09901 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.8 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.10114 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.878 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.95684 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.411 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.00367 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.913 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.00031 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.00394 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.654 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1404 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1519344 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -279.654 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -279.654 -282.404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -279.654 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.9996 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.758 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.0028 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.773 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.99757 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.469 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.98893 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.065 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.00744 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.042 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.11529 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.88 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.1231 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.51 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1407 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1530516 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -279.51 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -279.51 -282.404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -279.51 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.13038 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.067 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.1384 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.207 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.13499 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.246 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.15332 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.338 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.15734 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.391 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.10932 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.617 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.10938 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.867 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.11466 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.527 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.07166 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.115 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.08214 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.924 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.0746 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.735 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1423 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1583948 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -280.735 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -280.735 -282.404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -280.735 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.08358 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.695 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.07536 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.844 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.0771 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.124 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.07837 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.143 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.07902 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.806 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.92747 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.102 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.92247 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.338 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.92362 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.217 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.92378 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.276 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.91765 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.735 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.92095 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.839 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.92324 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.301 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.95291 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.783 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.95749 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.875 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.95376 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.731 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1371 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1529740 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -279.731 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -279.731 -282.404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -279.731 protocols.moves.TrialCounter: kic_refine_r1 trials= 403; accepts= 0.3251; energy_drop/trial= 0.02055 protocols.moves.TrialCounter: kic_refine_r2 trials= 403; accepts= 0.3201; energy_drop/trial= -0.06514 protocols.moves.TrialCounter: repack trials= 22; accepts= 1.0000; energy_drop/trial= -1.16431 antibody2.AntibodyUtil: Utility: Checking Kink/Extended CDR H3 Base Angle antibody2.AntibodyUtil: Base Dihedral: -123.349 antibody2.AntibodyUtil: Utility: Finished Checking Kink/Extended CDR H3 Base Angle: 0 protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 9 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1221 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1357284 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -254.55 -254.55 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -254.55 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 0.313077 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -254.611 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 0.412531 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -254.404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.13529 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -253.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.434 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -252.472 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.50477 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -253.375 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.49505 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -253.903 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.49399 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -254.656 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.47106 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -254.074 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.4704 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -254.013 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 8.874 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -252.586 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 8.87493 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -252.482 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 8.79318 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -253.792 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 8.79166 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -253.566 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 8.3225 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -262.352 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 8.55593 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -262.137 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 8.54648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.079 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 8.97385 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.205 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 8.9589 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.413 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.63685 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.828 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.63522 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.897 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.60385 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.885 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1244 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1265288 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -265.59 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -265.59 -265.897 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -265.59 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.64898 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.682 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.58215 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.387 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.58933 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.587 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.58344 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.469 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.60424 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.999 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.58582 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.084 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.59963 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.62589 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.272 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.67876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.616 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.67819 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.983 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.58712 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.821 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.59055 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.857 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.59627 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.665 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.61766 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.259 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.61732 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.023 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.61388 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.542 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.59673 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.204 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.59519 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.206 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1227 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1233064 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -265.206 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -265.206 -266.587 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -265.206 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.601 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.204 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.5886 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.738 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.4571 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.902 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.4583 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.476 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.45491 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -263.787 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.46252 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.478 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.41637 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -264.475 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.36063 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.841 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.37085 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.038 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.36835 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.417 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.38194 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.18 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.39805 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.367 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.39072 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.218 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.39141 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.613 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.38407 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.872 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.6467 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.062 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.88089 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.377 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.94801 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.563 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1123 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1167824 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -267.606 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -267.606 -268.377 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -267.606 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.93743 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.621 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.96267 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.397 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.27804 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -266.883 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.31728 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -265.666 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.3312 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.825 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.38783 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -267.937 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.33978 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.326 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.23912 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.335 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.16805 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.239 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.16813 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.868 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.10836 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.82 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.1096 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.88 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.09119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.11357 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.088 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.1241 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.103 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.05879 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.626 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.00877 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.135 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.01951 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.955 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.01854 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.101 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.18421 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.567 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.19264 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.654 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.16974 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.945 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1091 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1104656 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -271.962 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -271.962 -271.962 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -271.962 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.17802 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.085 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.16936 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.051 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.19056 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.38 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.15577 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.6 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.14714 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.222 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.14159 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.122 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.28474 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.27164 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.593 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.26407 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.168 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.23075 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.909 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.24161 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.613 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.29373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.51 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.43547 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.704 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.41572 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -268.579 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.26539 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.124 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.26061 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.135 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1156 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1233280 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -270.135 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -270.135 -272.119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -270.135 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.26451 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.924 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.26879 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.801 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.27317 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.803 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.26257 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.633 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.26945 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.202 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.2408 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.641 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.32144 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.129 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.30417 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.417 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.28718 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.577 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.29537 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.382 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.26874 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.874 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.27764 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.68 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.26784 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.305 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.27745 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.696 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.24349 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.004 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1067 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1049088 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -271.005 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -271.005 -272.119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -271.005 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.15907 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.74 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.16514 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.628 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.14988 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.734 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.15929 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.761 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.13954 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.615 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.14859 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.468 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.14789 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.672 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.20422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.307 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.20499 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.376 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.1758 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.369 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.14638 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.905 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.15754 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.465 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.26957 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.216 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.21469 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.297 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.19275 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.616 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.16146 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.348 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1067 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1045316 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -268.759 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -270.348 -272.119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -270.348 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 2 -272.119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.26015 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.138 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.26515 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.015 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.38215 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.286 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.35895 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.324 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.36818 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.67 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.34413 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.35999 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.44 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.33995 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.184 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.29848 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.384 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.31315 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.713 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.30721 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.512 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.30122 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.097 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.27787 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.441 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.28516 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.502 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1191 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1309436 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -270.644 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -272.502 -273.67 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -272.502 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.23922 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.957 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.22787 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.254 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.2066 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.406 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.21606 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.651 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.21292 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.451 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.2495 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.304 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.37962 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.714 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.43262 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.313 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.47337 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.14 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.46569 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.429 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.45268 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.005 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.45214 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.248 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.44044 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.359 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.45514 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.158 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.44908 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.191 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.4834 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.269 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.47696 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.884 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.47773 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -269.637 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.28238 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.091 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1200 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1365372 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -273.235 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -274.091 -274.091 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -274.091 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.27412 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.624 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.23456 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.752 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.29478 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.306 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.31263 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.415 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.31262 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.318 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.338 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.035 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.33614 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.95 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.30817 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.486 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.30873 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.507 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.32151 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.645 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.3092 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.598 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1195 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1383152 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -272.598 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -272.598 -274.624 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -272.598 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.28502 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.063 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.28305 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.086 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.288 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.092 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.22898 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.22253 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.302 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.25969 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.581 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.25778 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -270.923 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.19945 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -271.762 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.19932 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.553 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.19783 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.136 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.20654 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.184 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.21541 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.289 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.76563 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.388 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.81246 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.096 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.80529 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.356 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.81268 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.996 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.816 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.46 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1099 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1164652 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -272.46 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -272.46 -274.624 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -272.46 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.81368 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.354 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.79772 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.213 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.79368 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.621 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.79033 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.348 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.79496 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.174 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.07674 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.53 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.08793 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.064 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.09738 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.244 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.10246 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.532 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.16297 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.642 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.15473 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.842 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.14917 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.979 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.13794 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.087 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.14672 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.832 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1224 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1371012 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -274.832 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -274.832 -275.087 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -274.832 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.13242 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.449 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.13405 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.432 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.12446 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.569 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.12081 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.462 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.12905 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.281 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.11723 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.628 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.04847 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.49 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.03995 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.628 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.04314 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.168 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.0472 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.146 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.04166 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.291 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.04245 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.358 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.13307 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.082 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1297 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1575824 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -276.082 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -276.082 -276.628 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -276.082 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.15356 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.697 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.14495 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.241 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.14364 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.958 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.13479 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.009 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.22509 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.313 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.97321 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.811 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.96654 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.601 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.97369 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.329 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.9744 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.723 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.93457 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.777 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1154 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1225388 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -276.796 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -276.796 -276.796 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -276.796 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 3 -276.796 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.94481 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.168 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.96909 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.445 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.97621 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.767 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.98837 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.133 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.97401 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.492 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.97954 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.372 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.9746 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.997 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.9856 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.555 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.96457 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.313 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.96546 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.285 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.94115 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.17 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.17736 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.18 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.16013 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.013 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.16117 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.126 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.16737 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.825 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.1692 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.808 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1232 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1385356 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -273.808 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -273.808 -276.796 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -273.808 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.16709 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.701 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.15859 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.822 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.15649 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.938 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.13618 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.636 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.13523 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.75 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.13229 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.688 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.1348 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.06992 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.711 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.07165 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.638 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.05159 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.537 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.04768 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.976 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.03699 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.475 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1220 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1364392 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -274.703 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -275.475 -276.796 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -275.475 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.04292 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.549 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.04349 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.949 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.05107 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.032 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.04131 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.314 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.04793 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.54 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.04032 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.906 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.03299 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.791 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.03928 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.238 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.03881 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.842 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.06881 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.8 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.06275 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.687 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.06451 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.531 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1247 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1429740 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -275.531 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -275.531 -276.906 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -275.531 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.03552 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.464 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.03814 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.506 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.05096 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.065 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.05349 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.324 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.06262 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.453 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.06369 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.602 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.06285 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.93 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.045 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.941 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.03863 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.262 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.04469 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.889 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.03499 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.924 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.01188 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.012 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.00589 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.579 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.99944 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.194 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1150 rotamers at 51 positions. core.pack.pack_rotamers: IG: 1188880 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -275.194 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -275.194 -276.93 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -275.194 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.91284 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.048 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.91181 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.072 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.91477 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.036 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.91443 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.316 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.91596 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.327 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.90727 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.855 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.89347 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.025 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.89 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.473 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.86821 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.03 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.88789 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.577 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.88412 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.542 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round