core.init: Mini-Rosetta version 52530 from https://svn.rosettacommons.org/source/trunk/rosetta/rosetta_source core.init: command: condor_exec.exe -seed_offset 31 -database /home/rosie/rosie/rosie.back/data/antibody/rosetta_database -s FR_0001.pdb -scorefile score.sf -multiple_processes_writing_to_one_directory -ex1 -ex2 -antibody::remodel perturb_kic -antibody::snugfit true -antibody::refine refine_kic -antibody::cter_insert false -antibody::flank_residue_min true -antibody::h3_filter true -antibody::h3_filter_tolerance 20 -antibody::h3_no_stem_graft true -nstruct 50 core.init: 'RNG device' seed mode, using '/dev/urandom', seed=-1543102510 seed_offset=31 real_seed=-1543102479 core.init.random: RandomGenerator:init: Normal mode, seed=-1543102479 RG_type=mt19937 protocols.antibody2.AntibodyModelerProtocol: Setting Up defaults.......... protocols.antibody2.AntibodyModelerProtocol: Start Reading and Setting Options ... protocols.antibody2.AntibodyModelerProtocol: Finish Reading and Setting Options !!! core.scoring.etable: Starting energy table calculation core.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well core.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6) core.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6) core.scoring.etable: Finished calculating energy tables. basic.io.database: Database file opened: scoring/score_functions/PairEPotential/pdb_pair_stats_fine basic.io.database: Database file opened: scoring/score_functions/hbonds/standard_params/HBPoly1D.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/standard_params/HBFadeIntervals.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/standard_params/HBEval.csv basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/env_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cbeta_den.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/pair_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cenpack_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/env_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cbeta_den.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/pair_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cenpack_log.txt basic.io.database: Database file opened: scoring/score_functions/MembranePotential/CEN6_mem_env_log.txt basic.io.database: Database file opened: scoring/score_functions/MembranePotential/CEN10_mem_env_log.txt basic.io.database: Database file opened: scoring/score_functions/MembranePotential/memcbeta_den.txt basic.io.database: Database file opened: scoring/score_functions/MembranePotential/mem_pair_log.txt basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_n basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_pp basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/env_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cbeta_den.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/pair_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cenpack_log.txt basic.io.database: Database file opened: scoring/score_functions/rama/Rama_smooth_dyn.dat_ss_6.4 protocols.antibody2: //////////////////////////////////////////////////////////////////////////////// protocols.antibody2: /// protocols.antibody2: /// Rosetta 3 Antibody Modeler /// protocols.antibody2: /// /// protocols.antibody2: /// camelid : 0 protocols.antibody2: /// protocols.antibody2: /// ****** model_h3 : 1 protocols.antibody2: /// h3_perturb_type = 'perturb_kic' protocols.antibody2: /// cter_insert = 0 protocols.antibody2: /// h3_filter = 1 protocols.antibody2: /// protocols.antibody2: /// ****** snugfit : 1 protocols.antibody2: /// LH_repulsive_ramp = 1 protocols.antibody2: /// protocols.antibody2: /// ****** refine_h3 : 1 protocols.antibody2: /// h3_refine_type = 'refine_kic' protocols.antibody2: /// h3_filter = 1 protocols.antibody2: /// h3_filter_tolerance = 20 protocols.antibody2: /// protocols.antibody2: //////////////////////////////////////////////////////////////////////////////// protocols.antibody2: protocols.jd2.PDBJobInputter: Instantiate PDBJobInputter protocols.jd2.PDBJobInputter: PDBJobInputter::fill_jobs protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 2 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 3 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 4 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 5 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 6 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 7 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 8 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 9 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 10 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 11 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 12 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 13 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 14 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 15 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 16 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 17 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 18 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 19 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 20 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 21 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 22 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 23 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 24 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 25 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 26 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 27 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 28 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 29 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 30 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 31 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 32 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 33 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 34 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 35 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 36 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 37 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 38 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 39 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 40 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 41 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 42 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 43 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 44 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 45 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 46 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 47 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 48 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 49 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 50 protocols.evaluation.ChiWellRmsdEvaluatorCreator: Evaluation Creator active ... protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from PDB FR_0001.pdb core.chemical.ResidueTypeSet: Finished initializing fa_standard residue type set. Created 6352 residue types core.conformation.Conformation: Found disulfide between residues 132 206 core.conformation.Conformation: current variant for 132 CYS core.conformation.Conformation: current variant for 206 CYS core.conformation.Conformation: current variant for 132 CYD core.conformation.Conformation: current variant for 206 CYD core.pack.task: Packer task: initialize from command line() protocols.antibody2.AntibodyModelerProtocol: AAAAAAAA cst_weight: 0 protocols.antibody2.AntibodyModelerProtocol: Danger Will Robinson! Native is an impostor! protocols.antibody2.AntibodyModelerProtocol: 'native_pose' is just a copy of the 'input_pose' protocols.antibody2.AntibodyModelerProtocol: since you didn't sepcifiy the native pdb name antibody2.AntibodyInfo: Successfully finished the CDR defintion antibody2.AntibodyInfo: AC Detecting Regular CDR H3 Stem Type antibody2.AntibodyInfo: AC Finished Detecting Regular CDR H3 Stem Type: KINKED antibody2.AntibodyInfo: AC Finished Detecting Regular CDR H3 Stem Type: Kink: 1 Extended: 0 protocols.antibody2.AntibodyModelerProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.antibody2.AntibodyModelerProtocol: /// Rosetta Antibody Info /// protocols.antibody2.AntibodyModelerProtocol: /// /// protocols.antibody2.AntibodyModelerProtocol: /// Antibody Type: Regular Antibody protocols.antibody2.AntibodyModelerProtocol: /// Predict H3 Cterminus Base: KINKED protocols.antibody2.AntibodyModelerProtocol: /// protocols.antibody2.AntibodyModelerProtocol: /// H1 info: protocols.antibody2.AntibodyModelerProtocol: /// length: 10 protocols.antibody2.AntibodyModelerProtocol: /// sequence: GYTFTNYGMN protocols.antibody2.AntibodyModelerProtocol: /// loop_info: LOOP 136 145 141 0 0 protocols.antibody2.AntibodyModelerProtocol: /// H2 info: protocols.antibody2.AntibodyModelerProtocol: /// length: 17 protocols.antibody2.AntibodyModelerProtocol: /// sequence: WINTYTGEPTYADDFKE protocols.antibody2.AntibodyModelerProtocol: /// loop_info: LOOP 160 176 168 0 0 protocols.antibody2.AntibodyModelerProtocol: /// H3 info: protocols.antibody2.AntibodyModelerProtocol: /// length: 14 protocols.antibody2.AntibodyModelerProtocol: /// sequence: DYYGSTYPYYAMDY protocols.antibody2.AntibodyModelerProtocol: /// loop_info: LOOP 209 222 210 0 0 protocols.antibody2.AntibodyModelerProtocol: /// L1 info: protocols.antibody2.AntibodyModelerProtocol: /// length: 12 protocols.antibody2.AntibodyModelerProtocol: /// sequence: RASSSVSSSYLH protocols.antibody2.AntibodyModelerProtocol: /// loop_info: LOOP 24 35 30 0 0 protocols.antibody2.AntibodyModelerProtocol: /// L2 info: protocols.antibody2.AntibodyModelerProtocol: /// length: 7 protocols.antibody2.AntibodyModelerProtocol: /// sequence: STSNLAS protocols.antibody2.AntibodyModelerProtocol: /// loop_info: LOOP 51 57 54 0 0 protocols.antibody2.AntibodyModelerProtocol: /// L3 info: protocols.antibody2.AntibodyModelerProtocol: /// length: 9 protocols.antibody2.AntibodyModelerProtocol: /// sequence: QQYSGYPYT protocols.antibody2.AntibodyModelerProtocol: /// loop_info: LOOP 90 98 94 0 0 protocols.antibody2.AntibodyModelerProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.antibody2.AntibodyModelerProtocol: protocols.antibody2.H3CterInsert: Reading CDR H3 C-ter Fragments protocols.antibody2.H3CterInsert: LOOP 209 222 210 0 0 protocols.antibody2.H3CterInsert: cdr_h3_size=14 protocols.antibody2.H3CterInsert: aa_1name.size()=18 protocols.antibody2.H3CterInsert: ARDYYGSTYPYYAMDYWG protocols.antibody2.H3CterInsert: Finished reading CDR H3 C-ter Fragments protocols.antibody2.ModelCDRH3: Applying CDR H3 modeler antibody2.AntibodyUtil: Utility: Setting up simple one loop fold tree antibody2.AntibodyUtil: Utility: Finished setting up simple one loop fold tree core.chemical.ResidueTypeSet: Finished initializing centroid residue type set. Created 1980 residue types core.conformation.Conformation: Found disulfide between residues 22 96 core.conformation.Conformation: current variant for 22 CYS core.conformation.Conformation: current variant for 96 CYS core.conformation.Conformation: current variant for 22 CYD core.conformation.Conformation: current variant for 96 CYD core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: ALL_LOOPS:LOOP begin end cut skip_rate extended protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: LOOP 209 222 210 0 1 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: SELECTEDLOOPS:LOOP begin end cut skip_rate extended protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: LOOP 209 222 210 0 1 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: protocols.loops.loops_main: Pose fold tree FOLD_TREE EDGE 1 207 -1 EDGE 207 210 -1 EDGE 207 224 1 EDGE 224 211 -1 EDGE 224 232 -1 protocols.loops.loops_main: protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: Setting extended torsions: LOOP 209 222 210 0 1 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: Building Loop: LOOP 209 222 210 0 1 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: Building Loop attempt: 0 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: perturb_one_loop_with_KIC: 209 14 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: remodel init temp: 2 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: remodel final temp: 1 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: kinematic initial perturb with start_res: 209 middle res: 215 end_res: 222 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: loop rmsd before initial kinematic perturbation:0 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: Attempting loop building: 0 ... protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: initial kinematic perturbation complete protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: loop rmsd after initial kinematic perturbation:8.82997 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -66.8794 -66.8794 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.6395 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.84288 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.86899 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.657 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.6561 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.7893 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.8293 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.8502 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.8504 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.7209 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.6525 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.6399 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.7383 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.6938 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.6872 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.7165 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.0691 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.484 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.8827 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.7912 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.8269 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.7408 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.3604 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.3598 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.3222 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.3573 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.3595 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.3595 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.3587 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.3593 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.3702 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.3077 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.372 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.3708 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.3208 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.229 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.2008 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.2203 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.7751 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.2281 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.2171 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.6796 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.6766 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.7532 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.6145 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.6237 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.3824 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.394 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.4388 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.4443 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.1393 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.1456 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.5927 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.5913 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.8374 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.8383 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.8354 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.7429 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.5361 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.5919 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.6406 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.6143 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.7687 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.6783 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.7181 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.6981 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.7494 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.7729 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.795 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 14.0394 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 14.0476 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 14.0616 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 14.0921 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.8766 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.853 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.8385 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 13.8788 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.8817 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.8502 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.4807 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.482 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.3351 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.3353 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.1773 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.1741 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.193 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.147 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.1542 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.1456 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.1458 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.1417 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.144 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.0343 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.0643 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.0485 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.9545 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.9755 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.9851 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.9853 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.1307 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.1276 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.0991 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.3827 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.3826 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.5541 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.6134 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.6118 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.6008 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.5661 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.5655 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.5607 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.5515 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.5197 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.5138 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.482 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.5437 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.558 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.0743 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.4935 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.5362 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.257 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.2585 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.2462 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.2548 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.2529 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.9573 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.9556 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.9468 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.9573 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.9585 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.96 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.9676 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.9668 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.965 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.9647 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.963 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.9644 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.9655 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.9883 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.9768 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.9708 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.9645 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.7317 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.6264 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.5965 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.6043 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.5627 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.5663 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.5665 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.5661 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.5901 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.6013 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.6022 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.606 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.6012 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.6006 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.6011 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.6004 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.5859 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.6013 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.5384 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.9573 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.9539 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.05 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.0369 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.0273 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.0345 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 12.0343 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.9847 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.9753 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.9682 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.9688 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.9598 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.8936 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.9002 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.9521 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.9514 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.9577 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.9579 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.1443 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.1443 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.1495 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.1483 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.1477 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.4094 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.428 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.4273 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.73627 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.75864 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.75988 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.76912 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.77171 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.91911 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.96285 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.95433 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.90297 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.0211 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.84265 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.83616 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.83734 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.75823 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.92876 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.91213 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.92945 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.92416 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.09965 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.08961 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.09783 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.21233 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.24227 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.59745 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.9463 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.0008 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.85198 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.86154 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.84402 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.84185 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.84333 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.8341 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.86058 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.85801 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.87208 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.81889 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.12849 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.01418 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.46665 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.48506 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.53039 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.5327 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.89115 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.54189 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.70964 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.56628 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.56481 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.71224 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.74433 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.79369 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.78017 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.79179 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.78919 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.78947 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.88548 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.88498 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.90124 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.92026 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.91512 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.89984 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.89747 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.90058 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.84783 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.92553 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.94772 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.98097 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.86482 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.89109 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.80969 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.83575 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.84327 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.8503 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.80356 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.8074 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.80136 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.81052 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.4488 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.5115 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.5293 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.5324 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.6159 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.6154 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.7739 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.5091 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.4367 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.4256 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.4208 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.924 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.667 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.8974 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.8278 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.4739 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.4857 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.488 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.4914 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.4915 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.5033 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.4733 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.4522 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.4504 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.449 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.4533 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.4469 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.4432 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.4661 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.4616 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.5085 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.5195 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.521 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.468 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.3959 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.3961 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.3958 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.826 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.8296 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.2761 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.3687 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.3705 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.3628 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.3744 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.3412 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.3521 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.3066 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.3354 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.3429 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.3916 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.3921 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.3915 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.4212 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.7601 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.777 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.7774 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.783 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.7886 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.7619 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.9861 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.9912 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.9901 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.0079 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.0258 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 11.0784 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.1631 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.1605 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.1576 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.1553 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.1378 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.98799 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.4171 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.4202 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.4181 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.6148 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.5681 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.5697 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.5359 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.5184 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.7991 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.6743 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.3755 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.59023 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.58618 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.58453 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.51882 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.53481 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.53798 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.56802 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.99853 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.99503 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.00036 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.0059 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.31357 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.31005 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.30558 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.29436 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.5547 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.55351 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.5038 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.50165 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.50185 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.71382 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.81589 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.94995 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.9506 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.88688 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.00765 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.00621 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.00779 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.98456 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.97368 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.01379 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.01849 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.01836 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.01847 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.96085 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.95054 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.94629 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.94102 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.97215 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.97186 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.87529 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.92762 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.39523 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.40888 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.40938 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.4004 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.94747 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.1261 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.1174 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.1276 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.2983 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.2932 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.3206 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.3025 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.3419 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.342 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.3622 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.3367 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.3303 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.3484 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.3476 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.3481 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.35 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.3924 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.385 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.3747 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.3509 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.3546 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.3111 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.37 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.3196 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.3182 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.3176 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.2925 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.2954 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.2838 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.2714 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.2837 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.3395 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.324 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.324 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.2636 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.3898 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.39 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.4022 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.255 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.2733 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.1688 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.1667 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.2285 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.32 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.03428 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.06372 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.06914 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.04117 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.03302 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.03099 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.0314 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.97114 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.96839 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.05684 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.8904 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.92805 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.06542 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.76749 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.77165 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.71497 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.82449 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.82572 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.82656 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.8379 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.83591 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.71466 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.74488 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.89254 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.32867 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.35926 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.39585 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.39733 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.14322 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.40006 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.39653 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.4037 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.3998 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.37336 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.36748 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.36239 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.37343 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.26929 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.28548 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.48726 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.48598 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.48767 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.49163 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.36222 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.36415 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.36504 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.35285 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.37103 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.35582 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.34242 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.35772 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.3739 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.39129 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.91162 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.93722 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.94541 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.04384 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.97377 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.19428 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.85038 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.85006 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.14769 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.16018 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.88351 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.8839 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.88424 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.887 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.85837 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.86868 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.15985 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.16111 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.79377 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.8107 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.80844 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.80546 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.79957 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.79677 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.79512 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.79836 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.94534 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.92683 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.07619 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.02983 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.03359 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.00443 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.02232 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.02754 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.06255 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.0821 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.06943 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.09869 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.10179 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.05513 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.99439 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.13642 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.1383 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.11581 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.32914 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.37268 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.37676 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.32737 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.21435 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.21845 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.20232 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.20452 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.20418 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.22024 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.22217 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.22158 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.24628 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.63028 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.59389 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: result of loop closure:0 success, 3 failure 0 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: Loopstat: 209 222 209 222 14 time 135.0 0 time 0.0 -85.2022 ext protocols.antibody2.ModelCDRH3: Finished Modeling Centroid CDR H3 loop protocols.antibody2.ModelCDRH3: Finished applying CDR H3 modeler protocols::checkpoint: Deleting checkpoints of LoopMover protocols.antibody2.CDRsMinPackMin: FOLD_TREE EDGE 1 23 -1 EDGE 23 36 1 EDGE 23 30 -1 EDGE 36 31 -1 EDGE 36 50 -1 EDGE 50 58 2 EDGE 50 54 -1 EDGE 58 55 -1 EDGE 58 89 -1 EDGE 89 99 3 EDGE 89 94 -1 EDGE 99 95 -1 EDGE 99 135 -1 EDGE 135 146 4 EDGE 135 141 -1 EDGE 146 142 -1 EDGE 146 159 -1 EDGE 159 177 5 EDGE 159 168 -1 EDGE 177 169 -1 EDGE 177 208 -1 EDGE 208 223 6 EDGE 208 210 -1 EDGE 223 211 -1 EDGE 223 232 -1 protocols.antibody2.CDRsMinPackMin: protocols.loops.loops_main: Added cutpoint variants: RES: 30 protocols.loops.loops_main: Added cutpoint variants: RES: 54 protocols.loops.loops_main: Added cutpoint variants: RES: 94 protocols.loops.loops_main: Added cutpoint variants: RES: 141 protocols.loops.loops_main: Added cutpoint variants: RES: 168 protocols.loops.loops_main: Added cutpoint variants: RES: 210 basic.io.database: Database file opened: scoring/score_functions/disulfides/fa_SS_distance_score core.pack.dunbrack: Dunbrack library took 0.05 seconds to load from binary antibody2.AntibodyUtil: Utility: Setting Up Packer Task antibody2.AntibodyUtil: Utility: Done: Setting Up Packer Task core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 4222 rotamers at 147 positions. core.pack.pack_rotamers: IG: 7202500 bytes protocols.antibody2.RefineBetaBarrel: start finalize_setup function ... antibody2.AntibodyUtil: Utility: Setting Up Packer Task antibody2.AntibodyUtil: Utility: Done: Setting Up Packer Task core.pack.task: Packer task: initialize from command line() protocols.antibody2.RefineBetaBarrel: FOLD_TREE EDGE 1 23 -1 EDGE 23 30 -1 EDGE 23 36 2 EDGE 36 31 -1 EDGE 36 37 -1 EDGE 37 50 -1 EDGE 50 54 -1 EDGE 37 206 1 EDGE 50 58 3 EDGE 58 55 -1 EDGE 58 89 -1 EDGE 89 94 -1 EDGE 206 177 -1 EDGE 206 208 -1 EDGE 208 210 -1 EDGE 89 99 4 EDGE 99 95 -1 EDGE 99 110 -1 EDGE 177 159 6 EDGE 159 146 -1 EDGE 159 168 -1 EDGE 177 169 -1 EDGE 208 223 7 EDGE 223 211 -1 EDGE 223 232 -1 EDGE 146 135 5 EDGE 135 111 -1 EDGE 135 141 -1 EDGE 146 142 -1 protocols.antibody2.RefineBetaBarrel: protocols.loops.loops_main: Added cutpoint variants: RES: 30 protocols.loops.loops_main: Added cutpoint variants: RES: 54 protocols.loops.loops_main: Added cutpoint variants: RES: 94 protocols.loops.loops_main: Added cutpoint variants: RES: 141 protocols.loops.loops_main: Added cutpoint variants: RES: 168 protocols.loops.loops_main: Added cutpoint variants: RES: 210 protocols.antibody2.RefineBetaBarrel: finish finalize_setup function !!! protocols.antibody2.LHRepulsiveRamp: start apply function ... protocols.antibody2.LHRepulsiveRamp: repulsive ramp cycle 1: rep_weight = 0.02 protocols.docking.DockMCMCycle: Setting up defaults for DockMCMCycle: protocols.docking.DockMCMCycle: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockMCMCycle: /// Dockable Jumps: 1 /// protocols.docking.DockMCMCycle: /// Translation: 0.1 /// protocols.docking.DockMCMCycle: /// Rotation: 2 /// protocols.docking.DockMCMCycle: /// Scorefunction: /// protocols.docking.DockMCMCycle: ScoreFunction::show(): weights: (fa_atr 0.338) (fa_rep 0.02) (fa_sol 0.242) (hack_elec 0.026) (fa_pair 0.164) (hbond_sr_bb 0.245) (hbond_lr_bb 0.245) (hbond_bb_sc 0.245) (hbond_sc 0.245) (dslf_ss_dst 0.5) (dslf_cs_ang 2) (dslf_ss_dih 5) (dslf_ca_dih 5) (fa_dun 0.036) (chainbreak 1) (overlap_chainbreak 3.33333) energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 0 EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_protein_protein_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_monomer_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_max_dis: 5.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_min_dis: 1.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_die: 10 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_no_dis_dep_die: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockMCMCycle: HBondOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: include_intra_res_RNA_: false protocols.docking.DockMCMCycle: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockMCMCycle: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockMCMCycle: HBondOptions::show: params_database_tag_: standard_params protocols.docking.DockMCMCycle: HBondOptions::show: use_incorrect_deriv_: false protocols.docking.DockMCMCycle: HBondOptions::show: use_sp2_chi_penalty_: false protocols.docking.DockMCMCycle: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockMCMCycle: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: false protocols.docking.DockMCMCycle: HBondOptions::show: Mbhbond: false protocols.docking.DockMCMCycle: protocols.docking.DockMCMCycle: /// Packing scorefunction: /// protocols.docking.DockMCMCycle: ScoreFunction::show(): weights: (fa_atr 0.8) (fa_rep 0.44) (fa_sol 0.65) (fa_intra_rep 0.004) (pro_close 1) (fa_pair 0.49) (hbond_sr_bb 1.17) (hbond_lr_bb 1.17) (hbond_bb_sc 1.17) (hbond_sc 1.1) (dslf_ss_dst 0.5) (dslf_cs_ang 2) (dslf_ss_dih 5) (dslf_ca_dih 5) (fa_dun 0.56) (p_aa_pp 0.64) (ref 1) energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 0 EnergyMethodOptions::show: method_weights: ref 0.16 1.7 -0.67 -0.81 0.63 -0.17 0.56 0.24 -0.65 -0.1 -0.34 -0.89 0.02 -0.97 -0.98 -0.37 -0.27 0.29 0.91 0.51 EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_protein_protein_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_monomer_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_max_dis: 5.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_min_dis: 1.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_die: 10 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_no_dis_dep_die: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockMCMCycle: HBondOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: include_intra_res_RNA_: false protocols.docking.DockMCMCycle: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockMCMCycle: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockMCMCycle: HBondOptions::show: params_database_tag_: standard_params protocols.docking.DockMCMCycle: HBondOptions::show: use_incorrect_deriv_: false protocols.docking.DockMCMCycle: HBondOptions::show: use_sp2_chi_penalty_: false protocols.docking.DockMCMCycle: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockMCMCycle: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: false protocols.docking.DockMCMCycle: HBondOptions::show: Mbhbond: false protocols.docking.DockMCMCycle: protocols.docking.DockMCMCycle: //////////////////////////////////////////////////////////////////////////////// core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 1 core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 2 core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 3 core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 4 protocols.antibody2.LHRepulsiveRamp: repulsive ramp cycle 2: rep_weight = 0.10284 protocols.docking.DockMCMCycle: Setting up defaults for DockMCMCycle: protocols.docking.DockMCMCycle: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockMCMCycle: /// Dockable Jumps: 1 /// protocols.docking.DockMCMCycle: /// Translation: 0.1 /// protocols.docking.DockMCMCycle: /// Rotation: 2 /// protocols.docking.DockMCMCycle: /// Scorefunction: /// protocols.docking.DockMCMCycle: ScoreFunction::show(): weights: (fa_atr 0.338) (fa_rep 0.10284) (fa_sol 0.242) (hack_elec 0.026) (fa_pair 0.164) (hbond_sr_bb 0.245) (hbond_lr_bb 0.245) (hbond_bb_sc 0.245) (hbond_sc 0.245) (dslf_ss_dst 0.5) (dslf_cs_ang 2) (dslf_ss_dih 5) (dslf_ca_dih 5) (fa_dun 0.036) (chainbreak 1) (overlap_chainbreak 3.33333) energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 0 EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_protein_protein_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_monomer_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_max_dis: 5.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_min_dis: 1.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_die: 10 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_no_dis_dep_die: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockMCMCycle: HBondOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: include_intra_res_RNA_: false protocols.docking.DockMCMCycle: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockMCMCycle: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockMCMCycle: HBondOptions::show: params_database_tag_: standard_params protocols.docking.DockMCMCycle: HBondOptions::show: use_incorrect_deriv_: false protocols.docking.DockMCMCycle: HBondOptions::show: use_sp2_chi_penalty_: false protocols.docking.DockMCMCycle: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockMCMCycle: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: false protocols.docking.DockMCMCycle: HBondOptions::show: Mbhbond: false protocols.docking.DockMCMCycle: protocols.docking.DockMCMCycle: /// Packing scorefunction: /// protocols.docking.DockMCMCycle: ScoreFunction::show(): weights: (fa_atr 0.8) (fa_rep 0.44) (fa_sol 0.65) (fa_intra_rep 0.004) (pro_close 1) (fa_pair 0.49) (hbond_sr_bb 1.17) (hbond_lr_bb 1.17) (hbond_bb_sc 1.17) (hbond_sc 1.1) (dslf_ss_dst 0.5) (dslf_cs_ang 2) (dslf_ss_dih 5) (dslf_ca_dih 5) (fa_dun 0.56) (p_aa_pp 0.64) (ref 1) energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 0 EnergyMethodOptions::show: method_weights: ref 0.16 1.7 -0.67 -0.81 0.63 -0.17 0.56 0.24 -0.65 -0.1 -0.34 -0.89 0.02 -0.97 -0.98 -0.37 -0.27 0.29 0.91 0.51 EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_protein_protein_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_monomer_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_max_dis: 5.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_min_dis: 1.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_die: 10 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_no_dis_dep_die: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockMCMCycle: HBondOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: include_intra_res_RNA_: false protocols.docking.DockMCMCycle: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockMCMCycle: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockMCMCycle: HBondOptions::show: params_database_tag_: standard_params protocols.docking.DockMCMCycle: HBondOptions::show: use_incorrect_deriv_: false protocols.docking.DockMCMCycle: HBondOptions::show: use_sp2_chi_penalty_: false protocols.docking.DockMCMCycle: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockMCMCycle: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: false protocols.docking.DockMCMCycle: HBondOptions::show: Mbhbond: false protocols.docking.DockMCMCycle: protocols.docking.DockMCMCycle: //////////////////////////////////////////////////////////////////////////////// core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 1 core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 2 core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 3 core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 4 protocols.antibody2.LHRepulsiveRamp: repulsive ramp cycle 3: rep_weight = 0.18568 protocols.docking.DockMCMCycle: Setting up defaults for DockMCMCycle: protocols.docking.DockMCMCycle: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockMCMCycle: /// Dockable Jumps: 1 /// protocols.docking.DockMCMCycle: /// Translation: 0.1 /// protocols.docking.DockMCMCycle: /// Rotation: 2 /// protocols.docking.DockMCMCycle: /// Scorefunction: /// protocols.docking.DockMCMCycle: ScoreFunction::show(): weights: (fa_atr 0.338) (fa_rep 0.18568) (fa_sol 0.242) (hack_elec 0.026) (fa_pair 0.164) (hbond_sr_bb 0.245) (hbond_lr_bb 0.245) (hbond_bb_sc 0.245) (hbond_sc 0.245) (dslf_ss_dst 0.5) (dslf_cs_ang 2) (dslf_ss_dih 5) (dslf_ca_dih 5) (fa_dun 0.036) (chainbreak 1) (overlap_chainbreak 3.33333) energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 0 EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_protein_protein_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_monomer_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_max_dis: 5.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_min_dis: 1.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_die: 10 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_no_dis_dep_die: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockMCMCycle: HBondOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: include_intra_res_RNA_: false protocols.docking.DockMCMCycle: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockMCMCycle: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockMCMCycle: HBondOptions::show: params_database_tag_: standard_params protocols.docking.DockMCMCycle: HBondOptions::show: use_incorrect_deriv_: false protocols.docking.DockMCMCycle: HBondOptions::show: use_sp2_chi_penalty_: false protocols.docking.DockMCMCycle: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockMCMCycle: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: false protocols.docking.DockMCMCycle: HBondOptions::show: Mbhbond: false protocols.docking.DockMCMCycle: protocols.docking.DockMCMCycle: /// Packing scorefunction: /// protocols.docking.DockMCMCycle: ScoreFunction::show(): weights: (fa_atr 0.8) (fa_rep 0.44) (fa_sol 0.65) (fa_intra_rep 0.004) (pro_close 1) (fa_pair 0.49) (hbond_sr_bb 1.17) (hbond_lr_bb 1.17) (hbond_bb_sc 1.17) (hbond_sc 1.1) (dslf_ss_dst 0.5) (dslf_cs_ang 2) (dslf_ss_dih 5) (dslf_ca_dih 5) (fa_dun 0.56) (p_aa_pp 0.64) (ref 1) energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 0 EnergyMethodOptions::show: method_weights: ref 0.16 1.7 -0.67 -0.81 0.63 -0.17 0.56 0.24 -0.65 -0.1 -0.34 -0.89 0.02 -0.97 -0.98 -0.37 -0.27 0.29 0.91 0.51 EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_protein_protein_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_monomer_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_max_dis: 5.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_min_dis: 1.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_die: 10 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_no_dis_dep_die: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockMCMCycle: HBondOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: include_intra_res_RNA_: false protocols.docking.DockMCMCycle: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockMCMCycle: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockMCMCycle: HBondOptions::show: params_database_tag_: standard_params protocols.docking.DockMCMCycle: HBondOptions::show: use_incorrect_deriv_: false protocols.docking.DockMCMCycle: HBondOptions::show: use_sp2_chi_penalty_: false protocols.docking.DockMCMCycle: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockMCMCycle: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: false protocols.docking.DockMCMCycle: HBondOptions::show: Mbhbond: false protocols.docking.DockMCMCycle: protocols.docking.DockMCMCycle: //////////////////////////////////////////////////////////////////////////////// core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 1 core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 2 core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 3 core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 4 protocols.antibody2.LHRepulsiveRamp: finish apply function !!! protocols.antibody2.RefineBetaBarrel: finish repulsive ramping ! protocols.docking.DockMCMProtocol: in DockMCMProtocol.apply protocols.docking.DockMCMProtocol: Using the DockingTaskFactory. protocols.docking.DockMCMCycle: Setting up defaults for DockMCMCycle: protocols.docking.DockMCMCycle: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockMCMCycle: /// Dockable Jumps: 1 /// protocols.docking.DockMCMCycle: /// Translation: 0.1 /// protocols.docking.DockMCMCycle: /// Rotation: 5 /// protocols.docking.DockMCMCycle: /// Scorefunction: /// protocols.docking.DockMCMCycle: ScoreFunction::show(): weights: (fa_atr 0.338) (fa_rep 0.18568) (fa_sol 0.242) (hack_elec 0.026) (fa_pair 0.164) (hbond_sr_bb 0.245) (hbond_lr_bb 0.245) (hbond_bb_sc 0.245) (hbond_sc 0.245) (dslf_ss_dst 0.5) (dslf_cs_ang 2) (dslf_ss_dih 5) (dslf_ca_dih 5) (fa_dun 0.036) (chainbreak 1) (overlap_chainbreak 3.33333) energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 0 EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_protein_protein_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_monomer_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_max_dis: 5.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_min_dis: 1.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_die: 10 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_no_dis_dep_die: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockMCMCycle: HBondOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: include_intra_res_RNA_: false protocols.docking.DockMCMCycle: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockMCMCycle: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockMCMCycle: HBondOptions::show: params_database_tag_: standard_params protocols.docking.DockMCMCycle: HBondOptions::show: use_incorrect_deriv_: false protocols.docking.DockMCMCycle: HBondOptions::show: use_sp2_chi_penalty_: false protocols.docking.DockMCMCycle: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockMCMCycle: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: false protocols.docking.DockMCMCycle: HBondOptions::show: Mbhbond: false protocols.docking.DockMCMCycle: protocols.docking.DockMCMCycle: /// Packing scorefunction: /// protocols.docking.DockMCMCycle: ScoreFunction::show(): weights: (fa_atr 0.8) (fa_rep 0.44) (fa_sol 0.65) (fa_intra_rep 0.004) (pro_close 1) (fa_pair 0.49) (hbond_sr_bb 1.17) (hbond_lr_bb 1.17) (hbond_bb_sc 1.17) (hbond_sc 1.1) (dslf_ss_dst 0.5) (dslf_cs_ang 2) (dslf_ss_dih 5) (dslf_ca_dih 5) (fa_dun 0.56) (p_aa_pp 0.64) (ref 1) energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 0 EnergyMethodOptions::show: method_weights: ref 0.16 1.7 -0.67 -0.81 0.63 -0.17 0.56 0.24 -0.65 -0.1 -0.34 -0.89 0.02 -0.97 -0.98 -0.37 -0.27 0.29 0.91 0.51 EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_protein_protein_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_monomer_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_max_dis: 5.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_min_dis: 1.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_die: 10 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_no_dis_dep_die: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockMCMCycle: HBondOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: include_intra_res_RNA_: false protocols.docking.DockMCMCycle: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockMCMCycle: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockMCMCycle: HBondOptions::show: params_database_tag_: standard_params protocols.docking.DockMCMCycle: HBondOptions::show: use_incorrect_deriv_: false protocols.docking.DockMCMCycle: HBondOptions::show: use_sp2_chi_penalty_: false protocols.docking.DockMCMCycle: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockMCMCycle: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: false protocols.docking.DockMCMCycle: HBondOptions::show: Mbhbond: false protocols.docking.DockMCMCycle: protocols.docking.DockMCMCycle: //////////////////////////////////////////////////////////////////////////////// core.pack.task: Packer task: initialize from command line() core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1174 rotamers at 48 positions. core.pack.pack_rotamers: IG: 1102364 bytes core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1103 rotamers at 46 positions. core.pack.pack_rotamers: IG: 985628 bytes core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1106 rotamers at 46 positions. core.pack.pack_rotamers: IG: 979036 bytes core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1106 rotamers at 46 positions. core.pack.pack_rotamers: IG: 979036 bytes core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1192 rotamers at 45 positions. core.pack.pack_rotamers: IG: 1121052 bytes core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1076 rotamers at 41 positions. core.pack.pack_rotamers: IG: 863792 bytes core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() protocols.antibody2.RefineBetaBarrel: finish L_H Docking ! protocols.antibody2.RefineBetaBarrel: FINISH BETA BARREL REFINEMENT STEP !! antibody2.AntibodyUtil: Utility: Setting up simple fold tree antibody2.AntibodyUtil: Utility: Finished setting up simple fold tree protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 1 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 983 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1046760 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -305.833 -305.833 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -305.833 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.64139 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.827 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.66009 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.66084 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.86 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.67557 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.829 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.00454 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.66817 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.804 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.66042 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.815 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.68852 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.554 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.66555 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.516 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.69144 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.676 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.67555 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.715 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.68768 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.837 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.73678 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.284 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.80011 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.35 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.73503 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.951 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.71828 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.121 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1076 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1285212 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -309.121 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -309.121 -309.35 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -309.121 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.72545 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.895 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.6951 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.054 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.71088 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.131 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.71006 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.724 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.74648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.022 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.75094 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.483 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.77116 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.809 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.6872 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.271 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.71008 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.567 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.19217 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.334 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.09962 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.135 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.17049 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.012 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.19658 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.063 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.27676 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.829 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1065 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1251136 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -312.865 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -312.865 -314.063 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -312.865 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.22815 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.656 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.26592 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.057 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.24732 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.085 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.27296 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.602 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.25486 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.593 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.27522 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.52 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.28995 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.036 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.25443 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.534 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.28917 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.55 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.2976 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.767 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.30407 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.078 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.29838 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.191 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.22667 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.948 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.2471 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.108 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.28051 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.441 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.29269 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.084 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.29653 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.845 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1077 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1288092 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.571 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.571 -314.571 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.571 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.31836 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.678 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.31127 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.786 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.34152 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.242 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.27091 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.454 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.27377 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.445 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.34825 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.891 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.40935 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.818 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.38861 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.315 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.38543 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.138 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.37855 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.932 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.37806 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.189 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.3969 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.078 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.36014 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.378 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.31071 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.423 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.51202 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.583 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.51839 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.096 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 992 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1056244 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -308.403 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -308.403 -314.786 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -308.403 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.53404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.032 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.51049 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.278 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.73262 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.687 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.5912 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.975 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.56907 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.705 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.64617 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.838 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59343 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.933 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.70789 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.554 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.71014 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.443 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75856 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.305 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.71113 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.497 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.72239 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76295 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.782 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.71299 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.168 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.74694 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.167 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.73389 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.52 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1064 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1257080 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -309.54 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -309.54 -314.786 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -309.54 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.71791 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.581 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.81 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73376 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.577 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.73802 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.021 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74121 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.687 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.71899 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.773 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74815 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.299 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.73665 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.231 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80966 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.8231 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.8197 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.616 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78594 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.595 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1024 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1143824 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -311.596 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -311.596 -314.786 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -311.596 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81212 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.885 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.79224 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.949 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80631 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.256 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79633 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.994 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81652 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.326 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.8 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.31 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.86349 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.665 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.82674 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.503 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69027 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.717 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.85313 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.121 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.90284 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.878 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.87391 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.093 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.83478 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.507 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.8327 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.485 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.83827 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.664 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76577 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.375 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79441 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.857 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1002 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1103776 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -312.857 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -312.857 -314.786 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -312.857 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 2 -314.786 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69853 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.868 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.71153 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.46 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.6764 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.439 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68783 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.367 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67793 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.458 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65197 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.132 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.63349 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.434 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63323 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.983 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62525 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.077 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.6249 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.825 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.57862 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.629 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.5999 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.058 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.54789 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.011 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.57922 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.073 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62597 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.427 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1080 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1297332 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.634 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.634 -317.011 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.634 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61526 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.374 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.5945 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.785 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60846 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.833 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61399 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.608 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61536 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.418 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.63 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.213 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61689 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.351 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.6223 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.885 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.63596 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.516 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.56615 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.214 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.58831 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.761 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.55229 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.797 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.44998 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.543 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.44877 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.752 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.44004 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.771 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.44795 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.96 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.43754 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.496 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1083 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1297372 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -316.496 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -316.496 -317.011 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -316.496 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.42208 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.42894 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.469 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.43882 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.452 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.43348 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.892 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.41124 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.76 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.44814 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.773 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1055 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1243164 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.778 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.778 -317.011 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.778 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.51182 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.613 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.48432 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.169 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.46532 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.842 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.44217 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.457 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.45606 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.095 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.44259 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.414 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.44887 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.093 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.43941 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.009 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.47545 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.788 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.40601 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.729 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.39184 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.688 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.38958 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.664 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.3909 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.544 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1085 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1311112 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.544 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.544 -317.011 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.544 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.55217 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.68 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.53785 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.768 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60281 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.224 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59057 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.407 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.57134 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.368 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.57362 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.954 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.5616 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.232 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.56405 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.857 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61793 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.316 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.53655 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.991 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.55825 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.486 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.51751 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.012 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.54166 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.071 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66235 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.461 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.64531 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.81 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.65652 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.503 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65118 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.426 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1090 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1303376 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -316.426 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -316.426 -318.232 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -316.426 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.64799 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.397 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.64379 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.615 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.5946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.688 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60738 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.528 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59435 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.633 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60389 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.016 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.605 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.578 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.65353 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.855 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.57196 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.56255 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.162 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.56961 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.22 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.5596 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.224 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.57242 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.007 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61581 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.175 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62465 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.202 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.63516 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.258 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1090 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1326360 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -317.258 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -317.258 -318.232 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -317.258 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63595 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.491 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65471 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.037 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62828 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.853 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65527 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.127 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61948 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.718 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61506 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.723 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.771 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61042 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.188 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61768 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.901 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61549 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.955 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63567 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.019 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1070 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1263504 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -317.019 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -317.019 -318.232 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -317.019 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 3 -318.232 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.55861 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.006 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.5677 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.813 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.55779 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.613 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.5668 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.815 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.54556 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.125 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.56701 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.229 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.56388 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.357 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.55876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.354 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.5237 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.915 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 995 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1078568 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -317.982 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -317.982 -318.232 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -317.982 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.57147 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.704 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.54174 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.778 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.53566 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.039 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.54486 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.089 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.53939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.069 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.5051 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.78 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.52565 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.823 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.51589 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.84 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.51897 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.707 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.50584 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.314 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1105 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1355024 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -317.314 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -317.314 -318.232 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -317.314 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.58178 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.919 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61163 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.9 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61675 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.821 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62177 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.174 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63284 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.084 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.56927 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.775 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58298 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.128 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58831 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.267 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61693 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.76 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61091 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.672 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1110 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1362656 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -317.672 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -317.672 -318.232 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -317.672 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60944 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.942 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60892 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.071 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59794 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.986 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60419 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.944 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59333 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.893 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61315 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.812 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.57876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.76 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1098 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1342580 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -317.76 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -317.76 -318.232 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -317.76 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59271 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.804 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.54008 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.836 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.54361 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.816 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.53678 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.982 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.53159 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.943 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1109 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1364820 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -316.943 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -316.943 -318.232 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -316.943 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.53088 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.948 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.53717 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.114 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.5605 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.073 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.56015 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.277 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.57204 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.126 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.57449 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.257 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60329 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.995 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.6178 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.023 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1080 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1298772 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -317.057 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -317.057 -318.232 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -317.057 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60542 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.304 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.52016 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.199 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.51365 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.192 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.50621 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.739 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.51369 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.721 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.52764 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.62 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.55134 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.992 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.54463 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.566 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.5554 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.719 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.55668 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.571 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1069 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1276248 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -316.571 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -316.571 -318.232 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -316.571 protocols.moves.TrialCounter: kic_refine_r1 trials= 365; accepts= 0.3288; energy_drop/trial= -0.00095 protocols.moves.TrialCounter: kic_refine_r2 trials= 372; accepts= 0.3844; energy_drop/trial= -0.01572 protocols.moves.TrialCounter: repack trials= 22; accepts= 1.0000; energy_drop/trial= -0.91678 antibody2.AntibodyUtil: Utility: Checking Kink/Extended CDR H3 Base Angle antibody2.AntibodyUtil: Base Dihedral: 153.967 antibody2.AntibodyUtil: Utility: Finished Checking Kink/Extended CDR H3 Base Angle: 0 protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 2 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 983 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1046760 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -305.438 -305.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -305.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.63805 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.96 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.64841 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.817 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.65495 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.658 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.6709 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.426 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.02356 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.561 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.99618 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.437 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.99013 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.78 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.00821 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.928 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.57493 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.464 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58342 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.089 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61175 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.164 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60694 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.337 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62614 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.408 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.64431 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.688 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62179 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.568 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76265 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.123 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77675 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.039 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1063 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1225752 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -307.876 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -308.039 -308.039 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -308.039 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7537 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.49 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76492 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.268 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.35107 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.389 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.29731 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.34 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68859 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.272 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69264 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.776 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.69225 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.555 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.64304 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.706 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.87947 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.013 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.83912 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.915 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.84186 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.95 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.84977 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.847 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 978 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1041672 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -307.847 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -307.847 -308.039 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -307.847 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.83174 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.854 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.84088 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.89 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.84724 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.89733 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.88194 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.673 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.0233 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.863 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.24559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.414 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.19693 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.201 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.19349 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.468 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.29522 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.035 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.26644 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.288 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.27986 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.469 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.85706 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.226 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.88848 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -302.949 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.47748 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.82 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.45954 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.045 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 945 rotamers at 43 positions. core.pack.pack_rotamers: IG: 959240 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -307.037 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -307.037 -308.89 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -307.037 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.47358 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.138 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.49442 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.742 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.50432 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.069 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.52303 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.575 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.56575 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.669 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.57187 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.226 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.86683 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.356 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.87465 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.653 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.91128 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.817 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.85934 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.026 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.73467 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.405 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76726 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.458 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7656 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.569 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1027 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1191940 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -306.569 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -306.569 -308.89 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -306.569 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.6886 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.305 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.67978 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.599 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.69741 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.74 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.70795 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.62 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.71963 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.697 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74879 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.898 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.7168 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.6 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.0845 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.037 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.11069 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.281 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.13506 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.227 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.17284 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.954 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.15144 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.148 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1009 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1135988 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -306.148 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -306.148 -308.89 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -306.148 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.15838 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.4 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.14623 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.533 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.10984 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.95295 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.691 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.94516 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.617 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.94851 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.963 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.84012 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.265 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74634 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.142 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78206 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.957 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76967 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.824 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79179 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.999 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.7589 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.186 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79418 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.93195 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.741 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.93123 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.826 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1068 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1274600 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -306.826 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -306.826 -308.89 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -306.826 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.92954 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.613 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.92492 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.774 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.91833 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.512 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.92295 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.792 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.91121 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.32 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.81238 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.32 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.7622 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.628 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75986 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.239 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.741 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.033 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69997 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.987 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.68775 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.179 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81518 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.224 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.84631 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.743 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80614 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.989 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.87592 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.159 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1016 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1098348 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -307.56 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -307.56 -308.89 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -307.56 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 2 -308.89 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.94401 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.968 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.94043 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.215 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.92194 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.897 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.93656 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.047 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.9442 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.33 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.94086 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.25 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.42249 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.179 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.2734 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.965 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.3163 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.475 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.05595 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.377 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.04734 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.257 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.05733 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.913 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.0291 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.208 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1096 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1403024 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -310.302 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -310.302 -311.257 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -310.302 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.14678 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.332 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.17734 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.246 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.27669 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.754 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.23292 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.964 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.33282 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.008 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.3641 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.762 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.31403 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.502 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.32739 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.591 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.9429 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.525 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.9524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.697 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.93375 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.451 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.93668 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.483 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.93482 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.574 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.95469 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.235 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.96703 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.462 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1103 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1401516 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.462 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.462 -314.697 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.462 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.98906 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.814 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.00265 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.61 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.97426 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.213 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.98162 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.61 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.94668 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.699 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.9385 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.643 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.98641 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.748 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.9791 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.596 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.9382 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.162 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.87821 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.954 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1112 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1436776 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -313.964 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -313.964 -314.814 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -313.964 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.87949 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.925 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.87849 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.08 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.88381 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.389 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.88336 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.321 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.89013 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.31 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.13389 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.627 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.13848 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.665 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.07075 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.374 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.05813 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.92 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.02601 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.432 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.06692 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.667 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.05595 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.659 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.03382 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.086 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.02525 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.65 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.01847 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.88 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.03454 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.568 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.98918 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.775 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.87688 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.562 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7823 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.98 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77073 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.126 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1099 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1369524 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.034 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.034 -315.562 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.034 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.374 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.935 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.40584 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.14 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.40867 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.491 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.42618 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.856 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.42739 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.845 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.37952 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.596 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.41285 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.40511 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.423 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.36375 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.65 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1093 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1364572 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -312.718 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -312.718 -315.562 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -312.718 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.34974 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.042 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.32342 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.009 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.33297 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.678 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.30166 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.731 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.3545 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.393 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.36078 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.122 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.353 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.773 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62972 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.1 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61806 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.358 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60497 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.425 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62227 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.419 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.57882 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.284 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59348 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.502 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60918 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.695 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.58967 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.639 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60106 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1140 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1528668 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.524 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.524 -315.562 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.43353 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.126 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.42818 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.803 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.42469 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.664 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.42869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.584 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.4163 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.579 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.42103 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.606 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.42833 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.984 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.41668 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.873 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.44079 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.368 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.41881 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.255 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.4484 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.835 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61448 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.58851 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.501 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59938 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.206 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1136 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1498504 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -313.43 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -313.43 -315.562 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -313.43 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 3 -315.562 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.88544 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.175 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.71222 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.451 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.70447 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.568 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.70621 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.204 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69701 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.661 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.70318 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.034 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.71471 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.135 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.7189 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.893 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76191 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.16 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69917 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.858 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.70476 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.284 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.70465 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.184 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73759 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.708 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.71881 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.258 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.71745 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.684 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.74059 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.881 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.74163 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.83 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73181 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.836 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1104 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1395812 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -315.836 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -315.836 -316.858 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -315.836 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68388 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.811 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68629 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.538 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67751 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.679 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.6814 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.97 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.64939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.343 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65617 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.202 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.64341 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.58 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.65207 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.164 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.64604 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.879 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62297 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.218 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66234 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.431 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1092 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1360088 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -317.458 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -317.458 -317.58 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -317.458 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.70907 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.857 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75293 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.067 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.7717 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.207 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79107 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.076 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76515 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.79754 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.43 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75826 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.955 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.962 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75356 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.029 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1085 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1326212 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -318.03 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -318.03 -318.03 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -318.03 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75709 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.153 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74854 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.016 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75791 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.994 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.74533 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.18 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75425 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.216 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74298 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.065 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.70289 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.271 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72661 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.527 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.70934 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.758 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63508 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.458 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.641 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.477 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.63082 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.42 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.624 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.68205 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.431 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1083 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1332836 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -317.45 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -317.45 -318.271 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -317.45 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66227 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.67412 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.021 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.655 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.832 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.66635 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.016 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.64309 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.12 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66212 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.541 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.64139 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.772 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67509 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.322 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65467 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.231 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67978 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.399 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66177 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.469 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.6891 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.114 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72853 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.796 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69796 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.808 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1103 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1392736 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -317.821 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -317.821 -318.271 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -317.821 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.71725 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.908 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.70614 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.907 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7175 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.914 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.7185 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.2 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.71055 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69308 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.545 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66529 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.937 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1096 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1357844 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -318.937 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -318.937 -318.937 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -318.937 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.68303 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.825 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.67359 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.506 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.65809 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.558 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65727 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.839 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.64486 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.795 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68443 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.813 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67758 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.191 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.68624 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.288 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67615 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.309 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68746 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.279 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.72372 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.142 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69737 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.243 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.70023 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.448 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72531 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.66 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67362 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.765 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1107 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1384292 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -317.765 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -317.765 -318.937 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -317.765 protocols.moves.TrialCounter: kic_refine_r1 trials= 366; accepts= 0.3443; energy_drop/trial= -0.02583 protocols.moves.TrialCounter: kic_refine_r2 trials= 386; accepts= 0.4119; energy_drop/trial= 0.00348 protocols.moves.TrialCounter: repack trials= 22; accepts= 0.9545; energy_drop/trial= -0.92275 antibody2.AntibodyUtil: Utility: Checking Kink/Extended CDR H3 Base Angle antibody2.AntibodyUtil: Base Dihedral: -176.57 antibody2.AntibodyUtil: Utility: Finished Checking Kink/Extended CDR H3 Base Angle: 0 protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 3 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 983 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1046760 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -305.438 -305.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -305.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.67445 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.624 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.62133 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.258 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.58214 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.231 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.57106 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.486 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.51307 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.478 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.50323 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.76 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.51513 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -302.458 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.49976 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -302.032 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.4252 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -302.88 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.39891 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -302.789 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.39487 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.084 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.38105 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.234 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.41812 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -302.516 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.20668 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -300.942 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.19791 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -300.973 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.29155 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -298.796 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.59478 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -302.215 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 8.5394 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.083 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1026 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1159184 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -304.089 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -304.089 -305.624 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -304.089 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 8.55627 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.603 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 8.5674 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.511 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 8.58317 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.674 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 8.55337 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.681 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 8.54438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.706 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 8.59548 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.832 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 8.6014 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.711 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 8.5847 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.848 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 8.58761 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.809 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 8.56111 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.358 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 8.38901 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.822 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 8.62397 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.999 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 8.51664 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.437 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 8.52791 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.578 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 8.50289 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.497 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1020 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1161168 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -306.497 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -306.497 -307.848 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -306.497 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 8.52757 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.006 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 8.51511 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.138 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 8.5436 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.076 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 8.56474 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.571 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 8.59532 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.167 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 8.61484 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.687 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 8.63384 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.383 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 8.82977 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.793 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 8.83212 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.786 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 8.81749 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.853 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 8.83559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.021 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 951 rotamers at 43 positions. core.pack.pack_rotamers: IG: 978412 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -306.021 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -306.021 -307.848 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -306.021 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 8.73363 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.639 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 8.78064 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.144 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.64674 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.773 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.73003 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.154 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.72351 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.168 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.81375 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.616 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.79473 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.933 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.77619 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.333 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.76396 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.683 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.79278 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.276 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.78561 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.597 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.80827 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.487 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.78929 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.17 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.80417 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.942 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.79368 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.33 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 782 rotamers at 43 positions. core.pack.pack_rotamers: IG: 644836 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -308.33 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -308.33 -308.33 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -308.33 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.71033 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.86 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.65573 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.52 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.67394 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.726 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.66704 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.802 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.685 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.777 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.67212 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.227 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.69101 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.377 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.68034 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.56 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.70062 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.345 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.68418 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.848 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.42968 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.211 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.4939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.731 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.51327 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.603 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.50183 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.584 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.53134 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.432 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.50872 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.42 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.47492 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.66 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.46899 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.914 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 712 rotamers at 43 positions. core.pack.pack_rotamers: IG: 522976 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -310.914 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -310.914 -310.914 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -310.914 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.49204 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.763 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.4856 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.182 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.50335 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.04 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.49148 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.88 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.49995 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.652 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.48499 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.629 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.4927 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.05 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.47719 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.013 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.85911 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.631 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 765 rotamers at 43 positions. core.pack.pack_rotamers: IG: 599100 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -310.782 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -310.782 -311.652 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -310.782 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.87429 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.859 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.86954 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.921 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.89012 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.957 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.45963 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.3 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.43032 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.298 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.4376 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.268 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.41542 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.177 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.48455 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.621 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.5065 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.011 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.2193 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.207 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.20894 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.959 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.22248 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.168 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1008 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1093984 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -307.168 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -307.168 -311.652 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -307.168 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 2 -311.652 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.48486 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.599 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.49413 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.577 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.47198 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.938 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.39916 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.471 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.42196 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.697 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.41849 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.957 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.96649 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.264 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.95957 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.402 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.96943 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.515 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.96558 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.96242 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.512 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 991 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1073384 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -312.512 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -312.512 -312.559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -312.512 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.96139 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.241 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.95013 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.462 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.93209 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.564 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.86469 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.76 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.86986 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.56 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.85948 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.51 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.87224 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.776 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.85665 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.85958 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.745 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.87332 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.829 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.86995 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.34 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.90365 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.084 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.91213 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.261 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 717 rotamers at 43 positions. core.pack.pack_rotamers: IG: 509468 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -307.261 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -307.261 -312.559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -307.261 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.95523 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.265 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.94249 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.634 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.93093 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.104 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.95015 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.55 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.93245 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.092 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.73416 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.882 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.64927 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.907 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.16041 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.399 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.20746 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.993 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.18426 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.551 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.07006 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.627 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.72644 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.22 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.72625 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.86 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1004 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1103568 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -309.168 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -309.168 -312.559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -309.168 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.72149 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.276 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.80492 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.314 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.77715 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.051 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.84509 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.356 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.84516 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.492 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.58188 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.592 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.44941 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.554 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.45747 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.017 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.52358 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.433 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.53262 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.387 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.55434 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.799 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.59479 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.684 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.61358 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.265 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 989 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1096000 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -309.265 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -309.265 -312.559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -309.265 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.59812 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.998 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.56071 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.13 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.31092 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.896 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.33409 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.693 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.3648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.803 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.39583 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.592 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.3873 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.436 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.38492 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.211 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.39639 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.956 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.39256 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.407 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.40395 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.429 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.40367 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.713 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.41659 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.593 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.41339 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.128 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.42173 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.942 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.4117 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.878 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.41054 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.662 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.41812 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.121 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 987 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1046072 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -309.121 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -309.121 -312.559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -309.121 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.40964 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.75 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.41717 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.71 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.43808 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.385 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.45239 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.607 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.43527 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.474 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.40791 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.73 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.41769 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.885 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.40939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.094 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.42189 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.972 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.41715 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.873 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.42868 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.717 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.42531 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.602 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.43868 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.721 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.43249 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.567 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.44162 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.51 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.43024 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.615 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.41619 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.949 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.39911 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.998 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.39913 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.783 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 991 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1079856 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -310.783 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -310.783 -312.559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -310.783 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.39591 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.84 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.39462 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.339 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.38134 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.336 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.58386 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.849 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.61073 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.604 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.6004 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.034 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.34893 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.903 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.35004 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.269 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.36446 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.258 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.72359 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.92 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.68658 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.176 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.90205 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.271 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.27715 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.55 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.27991 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.051 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.26717 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.234 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.28654 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.099 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.26598 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.465 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 992 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1090060 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -311.465 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -311.465 -312.559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -311.465 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 3 -312.559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.94951 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.263 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.9485 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.186 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.93623 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.046 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.88669 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.738 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.87862 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.745 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.90287 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.779 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.89935 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.707 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.88685 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.728 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 6.89173 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.659 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 6.94112 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.534 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.48365 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.354 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.4723 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.419 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 963 rotamers at 43 positions. core.pack.pack_rotamers: IG: 990592 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -311.419 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -311.419 -312.559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -311.419 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.46873 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.229 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.4951 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.371 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.51657 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.311 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.49836 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.353 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.52208 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.436 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.58168 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.834 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.58165 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.958 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.57175 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.852 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 972 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1004196 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -311.852 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -311.852 -312.559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -311.852 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.57849 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.972 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.60581 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.693 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.60566 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.336 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.61561 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.88 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.62286 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.751 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.61862 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.743 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.62808 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.908 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.61251 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.79 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.62648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.779 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.61638 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.777 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.63059 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.647 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.62233 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.58591 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.677 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.46828 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.71 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.47085 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.366 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.45822 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.485 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1014 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1133356 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -310.485 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -310.485 -312.559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -310.485 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.45654 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.604 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.5514 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.166 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.55916 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.845 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.55841 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.94 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.56137 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.836 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.55902 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.619 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.55634 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.896 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.56207 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.586 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.55735 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.328 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.55254 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.454 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.58807 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.839 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.58147 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.158 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.5983 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.413 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.58157 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.394 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1000 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1102912 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -312.394 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -312.394 -312.94 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -312.394 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.59728 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.063 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.58832 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.169 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.60077 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.174 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.58846 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.744 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.5677 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.73 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.55877 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.828 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.54611 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.819 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.5587 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.296 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.54998 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.53 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.56067 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.631 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.55504 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.469 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1008 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1120648 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -312.469 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -312.469 -312.94 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -312.469 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.54709 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.497 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.55431 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.547 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.55321 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.402 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.56194 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.099 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.55488 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.123 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.55527 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.264 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.5631 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.282 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.55937 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.51 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.55694 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.523 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.71958 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.656 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.7117 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.77 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.71704 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.768 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.71752 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.751 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.74254 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.431 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1009 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1118248 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -312.431 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -312.431 -312.94 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -312.431 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.70975 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.228 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.72864 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.298 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.69632 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.447 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.71918 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.283 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.6989 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.256 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.71891 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.327 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.71587 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.548 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.73806 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.863 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.72693 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.048 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 7.74576 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.017 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.73177 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.94 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 7.73977 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.962 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1014 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1119792 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -310.962 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -310.962 -312.94 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -310.962 protocols.moves.TrialCounter: kic_refine_r1 trials= 375; accepts= 0.3573; energy_drop/trial= -0.00339 protocols.moves.TrialCounter: kic_refine_r2 trials= 396; accepts= 0.3914; energy_drop/trial= 0.00705 protocols.moves.TrialCounter: repack trials= 22; accepts= 1.0000; energy_drop/trial= -0.95505 antibody2.AntibodyUtil: Utility: Checking Kink/Extended CDR H3 Base Angle antibody2.AntibodyUtil: Base Dihedral: 156.718 antibody2.AntibodyUtil: Utility: Finished Checking Kink/Extended CDR H3 Base Angle: 0 protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 4 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 983 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1046760 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -305.438 -305.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -305.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.6527 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.74256 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.856 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.81561 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.273 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.77558 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.225 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.95366 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -301.903 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.90115 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -302.529 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.92751 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.581 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.89313 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.82 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.91765 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.73 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.94193 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.059 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.82421 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.858 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.75531 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.297 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.87478 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.848 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.76483 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.7 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.80232 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.79 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.83894 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.645 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.81487 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.825 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.79123 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.019 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1003 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1084300 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -306.969 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -306.969 -307.019 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -306.969 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.79676 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.956 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.24522 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.811 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.27711 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.396 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.28574 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.907 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.24975 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.695 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.246 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.714 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.25095 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.241 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.25544 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.243 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.2614 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.657 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.32683 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.606 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.34598 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.601 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.34575 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.53 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.31303 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.193 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 971 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1015332 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -309.113 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -309.113 -309.193 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -309.113 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.34826 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.647 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.34302 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.305 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.51421 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.065 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.55991 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.345 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66053 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.579 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74274 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.118 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72479 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.152 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72017 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.229 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.7364 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73615 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.768 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.94174 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.384 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.88404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.097 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.91103 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.58 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 973 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1037444 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -308.58 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -308.58 -309.647 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -308.58 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.90448 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.988 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.96035 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.98 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.96259 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.351 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.21965 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.346 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.13623 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.403 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.13997 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.29 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.1567 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.206 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.12722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.329 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.05493 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.616 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.95753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.996 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.98238 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.008 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.9634 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.489 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.97617 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.748 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.98491 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.934 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.98941 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.768 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1061 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1257088 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -311.768 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -311.768 -311.768 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -311.768 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.98922 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.49 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.01043 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.842 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.98663 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.845 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.01746 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.178 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.01597 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.341 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.00948 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.386 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.00934 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.151 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.00547 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.463 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.02336 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.133 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.05946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.139 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.03292 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.985 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.06259 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.756 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.03563 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.256 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1002 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1089404 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -310.256 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -310.256 -312.386 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -310.256 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.03991 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.731 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.10433 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.859 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.07932 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.906 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.97455 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.254 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.96982 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.145 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.96283 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.156 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.94528 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.953 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.9047 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.819 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.89954 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.23 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.95671 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.485 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.93346 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.743 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.96645 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.003 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 988 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1044388 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -312.003 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -312.003 -314.254 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -312.003 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.93303 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.86 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72117 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.003 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69372 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.327 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63554 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.329 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.66732 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.597 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63341 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.439 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66843 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.338 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.651 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.2 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58412 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.299 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66162 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.152 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65754 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.292 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.6713 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.18 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66669 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.849 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67948 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.942 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.47258 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.072 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.54054 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.257 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1067 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1266808 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -313.35 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -313.35 -314.254 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -313.35 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 2 -314.254 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.96912 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.131 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.96824 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.979 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.96445 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.98576 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.161 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.92506 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.81 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.92469 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.076 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.84657 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.886 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1059 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1263296 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -313.113 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -313.113 -314.254 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -313.113 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.86306 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.993 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.85522 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.091 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.86056 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.074 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.84297 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.77 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.86597 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.862 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.82319 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.915 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.81545 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.866 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80194 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.417 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.80624 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.676 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80601 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.725 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81884 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.387 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1053 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1225224 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -313.388 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -313.388 -314.254 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -313.388 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.84655 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.796 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59344 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.546 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.56022 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.522 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.56081 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.592 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.571 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.55052 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.815 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78383 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.329 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76062 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.71 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.78204 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.786 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77045 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.458 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1004 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1089408 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -313.498 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -313.498 -314.254 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -313.498 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63956 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.395 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60403 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.186 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.65151 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.883 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62702 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.08 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.6025 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.426 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59251 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.61 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.57979 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.164 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.79041 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.312 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81683 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.803 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.79751 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.512 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.7526 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.654 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 990 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1085704 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.654 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.654 -314.654 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.654 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78644 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.813 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.77721 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.807 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76593 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.835 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.78492 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.873 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76466 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.837 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75745 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.854 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78308 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.919 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76137 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.948 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72735 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.368 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.82389 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.542 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.86243 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.609 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.85151 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.655 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69716 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.002 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68947 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.128 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.70769 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.225 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1089 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1324536 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.225 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.225 -314.873 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.225 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.69445 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.23 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.68022 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.424 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.72281 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.252 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.73576 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.401 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.71451 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.276 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.72451 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.219 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72616 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.901 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61322 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.241 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.6131 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.21 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61133 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.109 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58165 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.282 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.977 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.58674 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.931 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58853 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.779 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1126 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1422440 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -313.779 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -313.779 -314.873 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -313.779 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.56875 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.804 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59965 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.585 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59032 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.848 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59878 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.527 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59145 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.316 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60512 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.086 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.58887 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.038 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61222 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.372 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59964 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.146 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61728 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.451 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59398 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.405 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60202 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.035 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58413 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.08 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59586 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.895 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1115 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1386548 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -311.895 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -311.895 -314.873 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -311.895 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 3 -314.873 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77192 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69411 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.983 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72504 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.103 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.72026 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.345 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.71946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.533 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.74484 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.606 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7369 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.744 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73297 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.621 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75074 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.685 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.71988 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.589 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73984 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.685 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.72963 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.498 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.73837 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.191 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73408 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.248 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.77059 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.767 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61096 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.661 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60665 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.226 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61229 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.783 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 959 rotamers at 43 positions. core.pack.pack_rotamers: IG: 994336 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -311.783 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -311.783 -314.873 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -311.783 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59613 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.522 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60283 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.671 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59133 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.077 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58271 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.557 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59395 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.003 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59581 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.063 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.58776 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.277 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59437 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.377 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59144 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.006 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61368 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.998 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60834 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.989 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62976 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.179 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1003 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1116456 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -311.179 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -311.179 -314.873 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -311.179 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62388 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.227 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63027 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.569 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76525 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.762 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75463 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.859 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76918 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.124 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.65146 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.856 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.63107 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.06 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61808 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.932 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62331 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.96 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.6347 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.029 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.63904 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.015 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1038 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1242332 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.015 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.015 -314.873 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.015 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63495 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.868 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62986 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.881 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.56757 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.792 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.57721 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.505 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60697 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.017 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61546 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.028 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62155 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.29 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62608 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.147 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.63192 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.076 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.64096 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.327 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.64835 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.214 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.64383 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.957 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.66289 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.151 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65037 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.308 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1050 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1263288 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -315.308 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -315.308 -315.505 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -315.308 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61656 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.709 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63835 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.714 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.5853 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.623 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62788 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.266 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66992 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.191 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.68369 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.162 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67503 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.63363 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.471 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.65638 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.68 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65285 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.484 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1067 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1253512 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -315.418 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -315.418 -316.191 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -315.418 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62957 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.465 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.65041 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.637 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.63966 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.035 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59605 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.791 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60132 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.746 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.593 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.222 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.5938 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.426 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59861 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.569 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60443 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.355 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60663 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.767 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59568 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.592 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60995 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.695 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1044 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1202528 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -313.695 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -313.695 -316.191 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -313.695 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.57609 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.692 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.55961 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.27 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.55085 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.179 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.54679 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.846 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.54355 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.846 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.5585 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.951 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58005 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.667 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.54728 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.927 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.53805 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.91 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1111 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1368840 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -315.91 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -315.91 -316.191 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -315.91 protocols.moves.TrialCounter: kic_refine_r1 trials= 367; accepts= 0.3542; energy_drop/trial= 0.02568 protocols.moves.TrialCounter: kic_refine_r2 trials= 384; accepts= 0.3620; energy_drop/trial= -0.04128 protocols.moves.TrialCounter: repack trials= 22; accepts= 1.0000; energy_drop/trial= -0.89588 antibody2.AntibodyUtil: Utility: Checking Kink/Extended CDR H3 Base Angle antibody2.AntibodyUtil: Base Dihedral: 143.163 antibody2.AntibodyUtil: Utility: Finished Checking Kink/Extended CDR H3 Base Angle: 0 protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 983 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1046760 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -305.438 -305.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -305.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.64723 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.09 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.66224 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.121 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.70185 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.007 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.67228 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -302.993 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.69142 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -302.983 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.70963 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.166 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.81523 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.636 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.54869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -301.667 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.3452 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -302.689 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.96125 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -302.973 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.96616 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.019 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.98423 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.956 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.97605 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.706 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.1403 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.257 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.35561 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.393 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.36771 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.266 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.34914 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.415 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.35422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.627 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1010 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1100388 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -305.228 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -305.228 -305.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -305.228 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77956 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.261 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78909 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.392 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.49396 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.525 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.52375 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.503 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.52287 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.096 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.46279 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.425 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.45963 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.44 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.46034 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.377 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.47122 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.395 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.46105 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.188 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.46942 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.254 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.47886 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.382 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.47907 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.183 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1005 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1094704 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -310.183 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -310.183 -310.44 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -310.183 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.52474 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.763 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.53306 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.989 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.53871 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.875 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.51676 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.982 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.52036 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.7 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.53403 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.953 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.53976 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.978 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.54004 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.295 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.56808 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.68 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.54999 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.609 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.48556 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.068 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.46936 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.297 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1017 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1122640 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -303.298 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -303.298 -310.44 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -303.298 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.46071 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -302.36 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.45092 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -302.405 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.46864 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.952 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.46382 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.707 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.43064 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.463 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.47272 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.346 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.44796 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.323 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.41772 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.11 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.42436 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.058 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.41104 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.335 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.47243 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.348 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.44135 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -302.659 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.42123 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -302.975 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.4439 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -302.516 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.38663 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.505 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.41768 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.657 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.40275 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.484 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.30723 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.608 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.39073 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.331 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 960 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1018340 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -306.35 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -306.35 -310.44 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -306.35 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.36706 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.326 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.35769 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.196 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.3809 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.833 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.35705 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.512 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.35855 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.277 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.34575 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.672 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.34857 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.825 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.27184 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.523 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.2735 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.354 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.28039 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.184 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.26928 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.804 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 968 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1032988 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -305.804 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -305.804 -310.44 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -305.804 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.2971 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.851 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.26622 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.461 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.26275 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.298 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.25821 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.902 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.18144 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.629 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.1675 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.062 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.16644 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.62 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.13846 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.149 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.13982 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.27 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.14366 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.129 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.12389 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.114 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.12467 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.742 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.1393 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.484 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.20967 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.496 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.19567 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.545 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.20782 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.37 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 988 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1075496 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -305.37 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -305.37 -310.44 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -305.37 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.21002 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.6 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.10955 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.796 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.15526 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.111 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.14703 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.502 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.13956 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.99 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.08367 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.511 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.09023 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.779 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.11654 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.835 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.09898 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.188 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.10714 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.353 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1047 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1221996 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -309.353 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -309.353 -310.44 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -309.353 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 2 -310.44 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.47074 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.523 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.47185 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.005 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.43129 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.87 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.47147 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.741 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.4632 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.635 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.40844 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.895 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.39218 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.978 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.38999 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.978 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.37419 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.016 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.39522 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.595 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1078 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1300772 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -307.603 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -307.603 -310.523 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -307.603 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.39872 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.668 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.40732 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.372 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.40459 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.864 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.42145 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.469 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.36921 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.491 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.39624 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.654 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.47248 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.572 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.39704 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.211 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.44572 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.022 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.42332 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.121 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.42742 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.076 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.72459 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.969 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.04589 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.995 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.99874 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.933 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.0183 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.914 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.01374 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.481 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.0051 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.732 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.93334 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.572 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 948 rotamers at 43 positions. core.pack.pack_rotamers: IG: 977604 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -308.572 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -308.572 -310.523 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -308.572 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.9205 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.607 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.92697 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.818 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.92774 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.799 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.25147 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.11 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.24648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.778 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.12121 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.476 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.12511 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.189 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.13746 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.491 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.1508 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.871 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 996 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1110252 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -307.871 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -307.871 -310.523 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -307.871 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.13475 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.062 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.14092 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.174 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.10146 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.327 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.1016 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.911 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.17577 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.499 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.19508 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.387 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.18317 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.447 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.18033 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.382 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.17487 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.609 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1031 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1193120 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -308.609 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -308.609 -310.523 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -308.609 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.19344 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.488 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.17746 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.408 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.17877 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.493 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.16134 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.45 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.14252 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.622 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.13732 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.167 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.13185 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.261 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.129 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.296 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.14449 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.169 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.13043 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.45 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.14205 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.542 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1042 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1190952 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -309.542 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -309.542 -310.622 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -309.542 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.13092 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.593 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.15053 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.646 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.12212 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.085 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.12351 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.798 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.09775 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.517 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.09999 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.68 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.08599 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.661 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.09441 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.681 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.10121 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.11 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.27023 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.728 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.29077 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.598 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.2727 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.751 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.29586 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.828 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.27035 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.937 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1107 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1421432 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -310.937 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -310.937 -310.937 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -310.937 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.84708 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.226 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.83199 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.83501 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.234 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.585 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.82881 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.583 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.80324 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.757 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.82109 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.579 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.79808 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.671 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81423 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.822 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81901 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.076 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.8274 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.143 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81871 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.292 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1113 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1406952 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -311.371 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -311.371 -312.234 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -311.371 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 3 -312.234 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.83018 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.209 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80386 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.081 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.7771 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.802 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.8634 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.015 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.88425 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.417 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.86657 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.411 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.60154 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.807 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.60143 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.214 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.60134 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.691 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.56094 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.414 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.55955 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.15 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.57065 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.21 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.56438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.184 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.57412 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.949 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.51014 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.355 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1059 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1269088 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -312.426 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -312.426 -312.426 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -312.426 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.50725 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.353 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.52028 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.581 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.53578 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.312 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.62247 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.849 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.61388 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.767 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.81596 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.718 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.83187 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.81504 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.341 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1107 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1400880 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -310.931 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -311.341 -312.559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -311.341 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.82925 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.724 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.82425 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.788 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.83461 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.819 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.77225 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.909 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.76407 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.092 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.7479 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.631 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.77552 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.803 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.77144 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.83458 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.815 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.84704 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.835 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.77345 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.806 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.75722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.427 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.63472 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.581 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.62278 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.644 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.63357 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.589 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.63844 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.528 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1085 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1329684 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.528 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.528 -314.644 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.528 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.6334 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.585 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.62645 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.776 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.62682 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.771 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.59326 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.902 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.58966 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.871 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.61345 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.32 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.6638 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.449 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.64778 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.31 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.65543 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.331 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.62611 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.376 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.61835 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.686 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.62559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.001 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1088 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1333512 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -315.001 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -315.001 -315.001 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -315.001 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.57318 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.951 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.57402 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.851 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.60438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.723 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.60189 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.653 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.61683 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.12 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.6122 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.094 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.61803 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.313 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.61745 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.197 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.68928 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.883 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.69123 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.045 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.68581 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.866 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.67869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.2 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1090 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1339800 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.2 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.2 -315.045 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.2 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.71213 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.285 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.69521 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.469 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.72855 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.3 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.71544 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.729 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.72588 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.795 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.61709 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.673 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.6264 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.95 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.65482 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.541 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.63947 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.458 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.60561 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.49 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1092 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1352136 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -313.493 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -313.493 -315.045 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -313.493 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.6145 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.567 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.53816 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.32 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.53436 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.184 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.52558 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.147 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.54161 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.181 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.44418 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.318 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1081 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1325940 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -313.325 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -313.325 -315.045 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -313.325 protocols.moves.TrialCounter: kic_refine_r1 trials= 374; accepts= 0.3262; energy_drop/trial= 0.01590 protocols.moves.TrialCounter: kic_refine_r2 trials= 381; accepts= 0.3648; energy_drop/trial= -0.02912 protocols.moves.TrialCounter: repack trials= 22; accepts= 0.9545; energy_drop/trial= -0.92427 antibody2.AntibodyUtil: Utility: Checking Kink/Extended CDR H3 Base Angle antibody2.AntibodyUtil: Base Dihedral: -164.412 antibody2.AntibodyUtil: Utility: Finished Checking Kink/Extended CDR H3 Base Angle: 0 protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 6 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 983 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1046760 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -305.438 -305.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -305.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.72934 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.28 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.70865 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.61 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.70471 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.602 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.10646 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.597 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.16469 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.296 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.16013 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.588 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.14722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.286 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.1229 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.972 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.12658 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.801 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.13172 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.555 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.92856 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -302.419 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.02902 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -294.966 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.00571 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -293.605 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.99479 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -292.983 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.00578 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -292.601 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.97785 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -298.306 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.97996 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -298.354 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.0102 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -298.721 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.03333 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -298.908 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.0346 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -299.91 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.06072 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -300.384 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.05966 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -300.836 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.06283 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -300.58 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.05851 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -300.557 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1209 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1729460 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -300.561 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -300.561 -305.61 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -300.561 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.06704 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -301.02 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.03399 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -301.068 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.03797 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -301.102 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.97439 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.987 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.97392 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.779 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.27161 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.944 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.1869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.612 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.23327 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.509 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.2765 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.754 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.26199 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.943 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.23367 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.767 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.86675 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.291 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.97771 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.43 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.95909 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.395 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.96232 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.805 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.96832 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.161 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.96046 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.232 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.96186 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.069 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 998 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1084968 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -308.069 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -308.069 -309.43 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -308.069 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.26489 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.211 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.24581 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.72 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.25616 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.677 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.24632 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.616 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.31681 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.216 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.27889 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.114 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.32135 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.811 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.30118 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.973 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.29309 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.773 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.28533 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.448 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.2853 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.212 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.28579 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.56 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.26368 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.693 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.21782 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.698 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.29616 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.349 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.23073 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.017 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.22451 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.688 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.24314 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.589 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.25437 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.981 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.24884 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.828 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1049 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1126744 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -310.828 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -310.828 -314.349 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -310.828 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.25895 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.947 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.25325 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.308 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.16455 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.959 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.23205 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.605 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.23118 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.984 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.20171 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.526 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.1249 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.266 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.13336 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.602 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.132 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.477 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.12381 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.04 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1086 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1238604 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -312.04 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -312.04 -315.959 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -312.04 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.1286 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.427 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.11905 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.009 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.14751 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.237 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.13893 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.864 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.13851 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.867 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.15124 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.896 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.15152 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.881 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.16217 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.045 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.15052 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.042 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.25898 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.546 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.24927 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.204 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.2504 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.231 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1071 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1177868 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -313.312 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -313.312 -315.959 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -313.312 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.25429 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.944 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.23493 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.703 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.23802 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.689 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.23185 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.666 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.20956 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.13874 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.487 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.13714 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.751 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.11192 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.591 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.11422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.491 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.13369 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.975 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 996 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1066704 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -315.975 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -315.975 -315.975 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -315.975 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.13203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.686 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.12194 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.584 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.13293 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.522 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.16546 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.44 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.15822 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.258 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.15298 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.979 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.133 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.322 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.13728 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.328 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.10584 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.454 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.11257 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.171 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.21084 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.955 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1057 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1156508 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -313.068 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -313.068 -315.975 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -313.068 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 2 -315.975 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.15268 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.976 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.15191 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.097 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.1428 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.16358 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.389 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.0371 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.042 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.03404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.149 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.03349 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.724 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.02859 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.169 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.98356 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.704 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.09451 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.265 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1022 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1151412 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -313.597 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -313.597 -316.097 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -313.597 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.08959 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.673 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.09087 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.714 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.08813 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.857 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.10987 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.315 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.11941 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.124 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.12478 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.484 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.12798 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.961 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.12901 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.971 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.12635 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.412 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.11854 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.532 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.12951 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.295 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.20103 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.152 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1184 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1652484 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -313.156 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -313.156 -316.097 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -313.156 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.20589 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.32 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.26749 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.021 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.23737 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.25 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.22246 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.132 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.23163 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.745 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.24012 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.302 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.24322 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.06 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.20898 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.05 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.23006 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.953 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.20163 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.493 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.19987 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.348 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.1268 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.813 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.19262 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.333 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.18937 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.523 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.19171 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.125 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.19608 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.212 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1019 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1156968 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -312.178 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -312.178 -316.097 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -312.178 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.18573 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.36 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.25897 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.164 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.25847 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.465 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.25478 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.415 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.25471 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.552 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.25795 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.093 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.24263 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.408 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.23482 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.06 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.23085 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.569 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.23175 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.835 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.22529 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.979 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.223 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.755 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1017 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1143252 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.755 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.755 -316.097 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.755 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.2031 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.379 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.21242 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.954 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.20961 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.842 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.22448 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.69 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.10673 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.744 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.09148 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.169 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.09339 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.907 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.09394 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.503 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1040 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1181328 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.503 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.503 -316.097 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.503 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.09823 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.39 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.09828 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.918 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.13399 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.441 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.12603 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.838 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.13091 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.13014 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.934 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.14009 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.392 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.09795 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.529 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.11604 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.604 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.10536 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.676 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.13678 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.898 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1031 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1169344 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -313.908 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -313.908 -316.097 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -313.908 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.13834 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.827 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.14044 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.296 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.14308 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.243 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.13641 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.385 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.13603 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.032 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.1394 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.814 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.14161 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.21 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.12816 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.011 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.17019 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.012 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.16479 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.057 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.1578 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.593 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.18581 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.361 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1026 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1167016 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.369 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.369 -316.097 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.369 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 3 -316.097 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.15033 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.184 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.15346 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.618 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.20683 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.011 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.19553 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.987 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.18536 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.909 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.1842 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.396 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.17054 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.167 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.17285 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.427 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.21972 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.448 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.20387 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.65 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.24806 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1080 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1198240 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -315.029 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -315.029 -316.184 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -315.029 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.27303 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.201 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.26423 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.215 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.22249 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.039 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.24867 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.23 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.36398 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.107 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.3375 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.552 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1064 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1162312 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -315.552 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -315.552 -316.184 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -315.552 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.32575 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.553 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.3157 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.971 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.32172 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.94 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.24466 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.334 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.22843 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.95 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.23184 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.711 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.22843 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.924 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.26736 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.483 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 981 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1034168 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -315.483 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -315.483 -316.184 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -315.483 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.26178 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.44 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.26278 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.624 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.20607 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.875 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.20334 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.667 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.21078 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.513 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.21293 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.608 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.21254 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.608 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.16418 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.808 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.16645 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.465 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1068 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1173916 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -316.465 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -316.465 -316.808 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -316.465 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.16813 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.915 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.20393 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.295 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.18568 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.259 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.17744 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.367 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.14388 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.301 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.181 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.238 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.21192 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.726 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.16957 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.704 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.17274 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.733 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.16629 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.737 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.1729 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.225 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.16861 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.529 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1069 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1187648 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -315.529 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -315.529 -316.808 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -315.529 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.16382 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.14 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.16333 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.05 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.17486 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.391 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.17442 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.378 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.17732 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.909 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.17786 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.983 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.17257 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.009 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.16774 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.688 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.16741 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.596 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.16822 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.748 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1065 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1185308 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.748 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.748 -316.808 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.748 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.16509 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.09 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.16734 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.573 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.02315 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.378 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.01171 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.617 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.01384 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.579 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.04777 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.776 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.0261 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.95 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.02589 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.921 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1007 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1092248 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -315.921 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -315.921 -316.808 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -315.921 protocols.moves.TrialCounter: kic_refine_r1 trials= 372; accepts= 0.3763; energy_drop/trial= 0.01731 protocols.moves.TrialCounter: kic_refine_r2 trials= 371; accepts= 0.2965; energy_drop/trial= -0.03089 protocols.moves.TrialCounter: repack trials= 22; accepts= 1.0000; energy_drop/trial= -0.92593 antibody2.AntibodyUtil: Utility: Checking Kink/Extended CDR H3 Base Angle antibody2.AntibodyUtil: Base Dihedral: 151.311 antibody2.AntibodyUtil: Utility: Finished Checking Kink/Extended CDR H3 Base Angle: 0 protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 7 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 983 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1046760 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -305.438 -305.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -305.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.72488 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.607 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.67631 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.627 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.66483 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.253 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.62305 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.881 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.29144 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.274 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.36251 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.721 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.3489 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.871 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.3741 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.913 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.36238 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.41348 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.6 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.39718 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.717 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.41289 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.592 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.41131 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.552 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.52133 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.683 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.53574 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.985 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.56774 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.576 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.53438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.667 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.57045 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.421 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1039 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1245576 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -309.421 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -309.421 -309.985 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -309.421 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.51073 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.412 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.51735 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.787 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.5195 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.859 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.56028 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.825 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.52235 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.026 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.53458 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.078 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.5441 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.924 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.56719 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.411 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.55487 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.464 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.56591 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.512 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.54379 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.494 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.5571 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.665 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.57193 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.445 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.54869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.807 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.5763 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.774 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1036 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1219864 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -310.774 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -310.774 -313.078 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -310.774 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.54904 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.143 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.57769 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.238 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.55263 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.323 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.56251 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.415 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.53101 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.221 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.90667 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.609 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.87525 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.061 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.89644 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.271 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.90329 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.141 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.92028 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.137 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.51991 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.57 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.94175 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.202 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76968 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.557 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77208 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.765 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.77282 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.726 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.686 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7766 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.104 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.80243 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.025 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75703 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.351 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78521 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.105 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 999 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1081792 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.09 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.09 -315.765 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.09 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.77312 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.027 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.82812 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.573 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.84982 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.278 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.82194 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.31 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.86232 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.01 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.8816 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.809 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.90586 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.085 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.97484 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.29 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.98493 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.49 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1181 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1710264 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -313.491 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -313.491 -315.765 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -313.491 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.14545 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.408 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.87443 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.423 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.88192 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.778 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.87079 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.331 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.86862 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.89849 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.167 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.87227 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.525 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.87334 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.595 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.24773 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.318 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.2239 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.202 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.21106 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.801 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.3291 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.37 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.36345 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.77 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.04473 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.395 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.99303 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.907 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.84661 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.967 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1029 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1197348 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -310.913 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -310.913 -315.765 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -310.913 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.9115 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.258 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.92214 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.482 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.91305 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.491 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.92258 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.833 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.88893 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.644 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.87466 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.682 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.89343 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.781 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.89321 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.729 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.86211 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.396 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.86181 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.42 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.8737 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.58 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1185 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1697804 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -311.58 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -311.58 -315.765 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -311.58 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.87023 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.449 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.85349 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.468 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.81831 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.551 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81295 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.097 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.87169 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.272 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.83861 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.379 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.8605 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.509 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.87649 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.583 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.86021 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.351 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.86492 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.435 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81805 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.675 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.83391 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.807 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80889 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.206 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.82202 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.533 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.81547 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.52 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.84188 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.937 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.80852 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.64 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79606 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.743 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.81445 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.52 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.85725 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.164 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1184 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1659612 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -312.169 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -312.169 -315.765 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -312.169 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 2 -315.765 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7651 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.735 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77384 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.622 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78174 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.275 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77643 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.996 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.80955 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.385 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76608 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.485 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.78004 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.507 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75587 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.108 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78768 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.43 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7549 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.033 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.73854 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.662 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76085 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.851 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74685 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.093 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 964 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1003404 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -315.093 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -315.093 -315.851 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -315.093 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.72575 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.589 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73028 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.702 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.77005 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.004 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73779 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.909 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66626 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.025 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75562 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.883 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7149 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.726 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.74225 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.823 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.72767 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.222 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73611 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.385 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.72567 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.334 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72983 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.868 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74865 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.032 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.71706 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.537 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.73703 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.802 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.72084 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.241 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1059 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1244084 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -315.241 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -315.241 -315.851 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -315.241 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74503 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.687 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80292 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.107 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76772 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.875 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.79897 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.968 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77079 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.038 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78017 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.686 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77198 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.685 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76748 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.755 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.78058 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.615 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77629 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.637 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77382 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.637 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78429 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.112 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.77504 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.611 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79053 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.076 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76681 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.664 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.7716 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.251 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76744 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.057 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75858 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.928 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.88241 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.853 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1049 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1222512 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -313.955 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -313.955 -317.755 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -313.955 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.8437 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.067 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.00295 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.597 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.02117 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.59 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.9295 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.97 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.92614 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.511 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.90798 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.645 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.90937 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.53 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.92219 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.305 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.92555 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.044 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1013 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1113056 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.044 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.044 -317.755 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.044 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.9243 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.791 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.00888 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.016 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.89482 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.931 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.91854 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.897 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.90465 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.063 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.83078 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.919 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.86252 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.073 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61306 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.163 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59367 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.6098 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.418 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60279 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.659 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60873 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.586 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61384 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.052 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61894 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.628 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60925 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.152 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1005 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1105748 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -315.152 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -315.152 -317.755 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -315.152 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65222 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.968 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62848 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.769 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62113 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.15 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61477 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.997 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.628 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.962 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62375 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.896 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59272 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.128 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61402 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.392 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61028 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.175 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.73366 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.636 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.70422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.847 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73595 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.827 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.64341 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.333 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62416 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.533 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65132 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.6487 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.509 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65494 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.971 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1023 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1138096 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -315.971 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -315.971 -317.755 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -315.971 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.64439 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.122 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62363 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.599 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.64561 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.374 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60975 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.218 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.53832 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.327 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.53776 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.174 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.47527 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.408 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.47268 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.709 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.48754 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.943 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58599 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.209 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.54879 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.251 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.56718 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.513 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59021 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.187 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 998 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1075940 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -318.191 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -318.191 -318.513 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -318.191 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 3 -318.513 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61343 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.606 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.6052 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.116 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.50524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.806 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58148 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.376 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.56185 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.533 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60544 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.328 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61927 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.436 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62969 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.514 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62854 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.554 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.64053 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.807 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66107 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.588 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.6535 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.681 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.64292 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.579 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.64737 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.621 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63537 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.568 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.64497 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.055 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1076 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1303936 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -318.055 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -318.055 -318.513 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -318.055 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62789 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.584 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60245 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.002 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62151 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.017 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61217 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.243 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62375 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.205 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61358 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.123 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.616 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.382 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61754 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.497 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.58871 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.215 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.57617 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.727 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1056 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1242164 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -318.14 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -318.14 -318.513 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -318.14 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.5853 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.284 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.58254 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.361 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60176 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.37 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58763 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.415 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.58979 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.512 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58544 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.533 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.58017 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.001 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58596 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.592 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.58377 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.754 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.5823 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.797 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.55776 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.706 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.57227 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.803 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.55599 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.562 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.53874 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.199 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1061 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1258836 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -317.143 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -317.143 -318.513 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -317.143 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.56144 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.243 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.54554 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.1 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.54215 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.641 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.55802 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.287 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62424 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.963 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.63922 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.208 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.63391 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.441 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61552 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.576 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66121 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.21 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.72166 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.022 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69183 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.568 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69186 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.736 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67239 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.623 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.67781 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.967 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.64446 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.111 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60604 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.228 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60582 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.204 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1059 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1246112 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -317.109 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -317.109 -318.513 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -317.109 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59865 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.115 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60121 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.729 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.53916 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.142 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.52803 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.848 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.54537 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.841 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.53356 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.882 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.52409 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.444 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.49985 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.46516 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.822 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.46908 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.903 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.47737 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.073 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.46855 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.399 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.48906 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.275 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.47219 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.811 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.44017 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.327 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.43058 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.258 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1029 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1158628 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.523 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.523 -318.513 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.523 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.40098 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.668 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.395 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.914 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.40737 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.847 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61545 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60837 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.555 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61561 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.903 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61314 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.827 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.56807 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.521 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60848 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.205 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61223 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.054 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.57787 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.769 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1090 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1331464 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -313.769 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -313.769 -318.513 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -313.769 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58826 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.01 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.58102 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.132 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58761 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.06 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.48994 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.425 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.32394 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.837 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.30276 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.909 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.3003 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.9 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.47006 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.7 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.47328 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.552 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.46909 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.45 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.489 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.762 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.4608 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.228 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.46886 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.22 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.46132 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.296 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.46972 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.277 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.48938 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.357 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1024 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1136888 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.36 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.36 -318.513 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.36 protocols.moves.TrialCounter: kic_refine_r1 trials= 367; accepts= 0.4523; energy_drop/trial= -0.00067 protocols.moves.TrialCounter: kic_refine_r2 trials= 375; accepts= 0.3867; energy_drop/trial= -0.00583 protocols.moves.TrialCounter: repack trials= 22; accepts= 1.0000; energy_drop/trial= -1.00528 antibody2.AntibodyUtil: Utility: Checking Kink/Extended CDR H3 Base Angle antibody2.AntibodyUtil: Base Dihedral: 142.316 antibody2.AntibodyUtil: Utility: Finished Checking Kink/Extended CDR H3 Base Angle: 0 protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 8 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 983 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1046760 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -305.438 -305.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -305.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.65327 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.911 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.65854 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.889 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.61566 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.826 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.63356 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.916 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.16482 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.953 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.15835 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.708 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.18135 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.4 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.16567 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.066 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.194 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.798 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.30196 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.34 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.27815 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.562 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.64058 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.702 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 970 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1013008 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -311.712 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -311.712 -311.712 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -311.712 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63047 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.456 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.65201 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.73 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65672 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.47 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.55134 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.916 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.51851 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.814 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73889 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.406 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80036 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.604 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67321 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.288 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.80208 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.894 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.80429 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.098 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78593 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.405 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81802 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.204 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.80817 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.176 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.73337 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.656 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.63739 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.588 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 984 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1037668 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -310.742 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -310.742 -311.712 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -310.742 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60204 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.678 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.58933 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.478 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.55687 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.81 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.58502 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.426 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.5631 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.778 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.58847 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.819 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65048 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.037 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63088 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.424 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66147 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.309 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65346 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.337 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.64441 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.134 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.63203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61245 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.743 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80852 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.744 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 993 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1062152 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -310.794 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -310.794 -312.424 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -310.794 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.84518 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.469 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77904 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.057 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.77919 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.071 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77834 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.091 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.82225 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.418 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.80249 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.226 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.82782 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.425 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80026 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.585 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76282 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.915 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75779 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.33 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61535 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.349 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.70186 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.777 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.70104 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.65 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.70705 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.375 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69978 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.68 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.69904 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.878 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 997 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1087400 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -313.878 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -313.878 -313.878 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -313.878 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.73617 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.782 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74703 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.659 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58061 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.708 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.57616 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.94 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58188 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.852 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63273 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.985 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.68114 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.419 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.66176 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.336 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.6822 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.906 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67344 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.801 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 991 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1083056 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -313.801 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -313.801 -314.419 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -313.801 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.6032 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.334 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60516 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.716 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67212 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.917 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.66025 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.456 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.6538 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.458 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.66638 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.39 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80929 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.749 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.57292 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.405 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7994 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.431 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81037 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.603 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1062 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1273148 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -312.603 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -312.603 -314.917 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -312.603 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.8266 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.892 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.0988 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.846 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.08066 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.99 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.08036 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.763 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.17916 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.175 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.84076 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.587 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66085 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.955 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66212 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.9 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.64799 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.063 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63965 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.819 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66411 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.449 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.66433 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.708 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61556 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.381 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.65092 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.065 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60627 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.053 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59021 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.321 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58172 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.253 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1025 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1136524 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -311.253 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -311.253 -314.917 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -311.253 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 2 -314.917 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.65883 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.414 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65347 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.02 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.64231 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.882 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80153 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.787 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7855 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.388 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80321 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.538 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.84379 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.027 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.83052 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.217 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.85488 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.121 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80895 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.629 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81228 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.812 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77983 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.269 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 986 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1075660 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.269 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.269 -314.917 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.269 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7892 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.026 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77565 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.989 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81815 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.719 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.537 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79332 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.176 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76853 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.229 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77345 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.639 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.78631 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.091 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79897 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.747 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74328 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.732 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.73794 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.449 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.74476 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.622 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.74608 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.257 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72789 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.379 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72567 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.784 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1061 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1267968 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -313.82 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -313.82 -314.917 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -313.82 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.70708 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.806 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72094 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.429 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61349 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.724 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.913 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61299 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.429 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.63489 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.863 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62261 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1032 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1192344 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -315.119 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -315.119 -315.119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -315.119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63853 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.406 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62389 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.147 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.6415 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.406 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61874 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.415 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.64298 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.902 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62788 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.83 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.63443 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.877 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61562 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.308 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62846 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.295 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61818 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.334 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60138 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.548 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.992 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66235 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.244 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.67476 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.167 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 991 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1075084 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.167 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.167 -315.548 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.167 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.56436 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.105 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.5906 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.832 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.57652 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.69 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.56624 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.045 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58252 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.315 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.57816 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.696 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.57572 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.656 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.57782 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.183 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59401 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.987 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.57876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.942 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58774 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.961 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.58358 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.194 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.57579 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.767 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60739 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.206 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60394 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.322 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.8011 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.162 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80456 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.4 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1065 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1275532 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.41 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.41 -315.548 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.41 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78564 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.407 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80365 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.536 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.74801 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.113 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76843 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.66722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.52 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.67377 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.596 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.69736 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.308 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7249 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.137 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.70894 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.384 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.70535 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.581 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73258 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.708 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.6736 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.129 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68288 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.879 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1040 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1188344 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -313.879 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -313.879 -315.548 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -313.879 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67702 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.877 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67912 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.858 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.69964 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.372 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68945 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.272 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67642 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.485 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68757 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.531 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.67756 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.494 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.67465 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.92 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.68322 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.823 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.70153 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.941 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.69202 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.797 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.69778 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.908 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1012 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1115980 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.908 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.908 -315.548 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.908 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 3 -315.548 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69435 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67245 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.386 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68652 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.446 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.6839 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.475 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.78172 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.408 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.82446 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.434 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.352 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65241 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.451 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62337 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.463 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.67095 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.687 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7772 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.406 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1105 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1359076 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -313.764 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -313.764 -315.722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -313.764 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75153 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.636 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76755 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.603 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75026 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.778 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76188 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.806 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.73147 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.024 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.73939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.6 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68719 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.101 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68159 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.044 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.69841 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.755 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73106 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.531 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74867 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.343 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.98827 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.368 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.98884 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.326 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.78932 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.938 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1119 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1407544 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -313.966 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -313.966 -315.722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -313.966 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77924 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.019 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7715 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.89 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.83553 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.814 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.82619 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.543 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.79892 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.059 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80489 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.14 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.78943 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.216 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.78952 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.283 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78062 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.295 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.77545 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.261 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.7969 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.213 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.79048 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.391 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75498 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.622 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77241 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.327 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7902 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.605 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1068 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1288020 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -312.605 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -312.605 -315.722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -312.605 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76855 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.229 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.77804 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.31 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.74956 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.366 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.77499 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.239 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.74823 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.999 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.5212 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.942 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.52956 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.848 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.51776 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.919 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.52706 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.966 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.56498 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.888 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.55864 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.958 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.56844 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.019 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.56868 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.824 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1108 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1363052 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -311.912 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -311.912 -315.722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -311.912 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79238 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.316 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.80354 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.492 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.84834 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.988 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.82774 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.086 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.84352 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.715 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.86147 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.794 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.03014 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.983 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.01617 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.763 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.00024 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.678 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.00278 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.729 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1073 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1290360 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.729 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.729 -315.722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.729 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.99936 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.731 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.99834 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.589 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.00106 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.577 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.99939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.299 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.00307 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.306 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.99239 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.359 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.9978 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.706 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.96807 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.676 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.94815 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.078 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.9648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.378 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.93982 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.512 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.95262 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.376 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.94304 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.458 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.95328 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.489 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.96043 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.413 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.95069 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.502 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1015 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1121424 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.502 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.502 -315.722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.502 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.93963 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.642 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.95079 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.744 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.93292 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.781 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.93992 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.576 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.91954 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.672 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.92976 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.697 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1054 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1233380 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.697 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.697 -315.722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.697 protocols.moves.TrialCounter: kic_refine_r1 trials= 371; accepts= 0.3315; energy_drop/trial= -0.01128 protocols.moves.TrialCounter: kic_refine_r2 trials= 381; accepts= 0.3832; energy_drop/trial= -0.00010 protocols.moves.TrialCounter: repack trials= 22; accepts= 1.0000; energy_drop/trial= -0.92174 antibody2.AntibodyUtil: Utility: Checking Kink/Extended CDR H3 Base Angle antibody2.AntibodyUtil: Base Dihedral: 140.699 antibody2.AntibodyUtil: Utility: Finished Checking Kink/Extended CDR H3 Base Angle: 0 protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 9 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 983 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1046760 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -305.438 -305.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -305.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.62522 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.162 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.65857 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.729 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.61684 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.744 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.61307 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.098 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.69159 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.414 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.37777 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.117 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.38356 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.269 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.38227 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.46 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.42229 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.989 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.48607 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.756 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.49385 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.595 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.48582 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.702 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.48588 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.092 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.48598 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.907 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1005 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1099584 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -308.907 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -308.907 -309.46 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -308.907 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.46384 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.45512 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.142 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.48354 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.192 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.47064 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.29 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.47924 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.805 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.49216 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.519 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.48195 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.82 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.45432 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.432 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.50162 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.021 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.38635 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.584 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.42049 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.856 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.43927 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.71 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.46087 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.849 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.44118 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.189 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1092 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1322500 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -310.189 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -310.189 -311.82 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -310.189 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.45315 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.028 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.46536 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.53374 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.425 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59015 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.67 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.51964 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.385 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.05204 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.15 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.03746 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.137 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.95671 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.435 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.9695 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.14 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.95107 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.787 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.93649 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.553 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.92033 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.863 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.93668 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.991 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.9338 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.914 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.32513 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.274 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.24934 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.516 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.28979 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.251 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.66373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.123 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1030 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1204716 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -303.228 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -303.228 -311.82 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -303.228 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.11597 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.944 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.0937 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.436 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.09573 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.338 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.11825 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.623 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.1048 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.07507 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.539 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.03767 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.347 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.02689 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.694 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.0633 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.164 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.95049 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.855 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.96566 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.09 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.91343 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.044 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.72089 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.881 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.23259 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.428 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.70792 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.547 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.70872 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.131 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1020 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1128024 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -308.131 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -308.131 -312.164 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -308.131 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.73537 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.453 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.70437 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.111 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.73599 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.038 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.71777 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.067 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.83766 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.338 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.82776 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.986 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.84289 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.931 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.83709 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.609 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.84627 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.339 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.81325 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.995 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.77465 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.111 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.76596 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.509 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.74966 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.509 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.77096 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.48 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.74992 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.71985 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.187 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.75137 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.767 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.81734 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.642 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.84387 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.834 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 979 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1058308 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -307.834 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -307.834 -312.164 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -307.834 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.83046 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.8445 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.608 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.98834 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.934 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.99307 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.077 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.99304 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.724 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.9181 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.916 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.031 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.612 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.05049 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.784 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.04536 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.646 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.99132 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.658 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.8763 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.747 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.85129 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.57 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.18804 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.874 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.17663 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.586 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 950 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1000440 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -307.676 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -307.676 -312.164 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -307.676 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.24776 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.914 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.27742 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.682 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.45723 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.187 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.42798 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.82 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.55963 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.299 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.5458 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.117 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.52582 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.844 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.54187 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.243 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.52119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.81 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.54008 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.03 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.53863 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.661 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.54948 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.596 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.5285 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.686 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.4765 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.823 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.50877 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.067 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.5044 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.075 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1065 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1306044 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -307.075 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -307.075 -312.164 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -307.075 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 2 -312.164 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.05483 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.195 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.07558 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.346 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.05452 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.878 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.01517 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.384 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65128 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.09 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.66072 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.922 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66048 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.932 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.6431 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.568 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.65347 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.755 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67573 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.461 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65537 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.371 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.70355 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.611 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.70598 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.612 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.65419 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.824 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1044 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1254256 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.828 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.828 -314.828 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.828 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66476 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.705 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.6589 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.616 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66551 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.625 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.66073 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.359 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63435 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.174 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.64954 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.813 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.63189 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.805 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62395 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.184 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67144 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.934 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66624 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.643 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.67367 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.217 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.65481 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.723 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68246 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.058 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.69198 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.964 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 992 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1078888 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -315.964 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -315.964 -316.058 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -315.964 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63481 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.66 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.6576 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.217 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.64614 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.532 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66162 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.65 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66589 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.734 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73642 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.73775 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.637 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75311 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.584 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61107 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.486 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.739 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61036 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.664 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1061 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1249912 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -315.664 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -315.664 -316.058 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -315.664 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59205 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.673 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.63609 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.516 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.56139 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.262 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60636 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.045 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.81267 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.762 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81358 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.059 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.82366 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.882 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.79788 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.625 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81428 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.762 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.93434 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.119 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1023 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1175320 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.178 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.178 -316.058 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.178 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.96992 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.42 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.92011 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.657 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.95458 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.471 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.94537 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.068 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.94814 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.072 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.94614 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.625 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.96451 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.194 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.88846 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.168 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.87801 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.315 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.90583 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.316 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.90096 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.099 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.9158 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.123 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.90372 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.8 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.91255 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.45 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1039 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1228544 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.45 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.45 -316.058 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.45 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.79314 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.316 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.81999 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.529 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81345 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.548 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.83223 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.84528 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.234 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.83 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.601 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.84138 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.738 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.83123 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.738 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73763 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.13 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74736 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.346 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.64238 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.956 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.69676 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.942 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67572 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.226 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.68321 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.443 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.70058 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.971 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65912 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.903 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69443 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.721 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65019 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.717 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66615 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.763 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1033 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1163740 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -315.763 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -315.763 -316.058 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -315.763 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63637 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.142 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.64402 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.827 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65431 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.416 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65877 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.578 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.65548 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.632 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.66065 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.647 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.6625 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.758 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.6651 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.518 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67651 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.278 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67043 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.843 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.65045 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.183 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.63573 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.141 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.95734 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.579 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1023 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1160428 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -317.802 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -317.802 -317.802 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -317.802 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 3 -317.802 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.92692 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.682 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.92268 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.775 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.82562 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.865 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.81167 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.764 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79842 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.642 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.81058 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.134 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81833 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.343 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81796 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.986 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.80003 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.646 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81431 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.41 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.77546 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.234 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.89404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.068 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.91254 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.751 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.89126 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.562 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.89097 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.085 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.89907 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.031 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.8991 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.923 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1041 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1204892 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.811 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.811 -317.802 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.811 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.99685 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.706 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.00518 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.086 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.00461 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.077 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.98245 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.285 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80555 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.519 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.78426 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.291 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.82238 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.999 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79788 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.102 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80894 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.972 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79746 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.733 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.80224 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.129 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.81536 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.78021 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.907 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.81196 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78538 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.111 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1044 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1190160 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -316.111 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -316.111 -318.291 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -316.111 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.80524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.15 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.80449 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.029 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.80502 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.174 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.83514 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.381 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76702 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.433 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75043 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.205 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75362 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.477 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76812 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.458 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.72922 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.252 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75713 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76713 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.043 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.775 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.538 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.78364 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.024 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1008 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1112340 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -316.024 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -316.024 -318.291 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -316.024 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.77255 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.755 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77992 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.759 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.89508 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.213 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.89547 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.439 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.84802 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.009 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.88872 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.214 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.88637 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.766 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.86586 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.703 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.87542 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.644 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.88514 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.82 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74822 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.191 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75979 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.271 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1030 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1167828 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -318.296 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -318.296 -318.296 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -318.296 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.78201 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.491 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76745 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.491 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77836 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.63 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.7876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.713 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78537 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.836 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79255 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.645 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78552 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.39 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.78923 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.844 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80468 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.49 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80563 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.667 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.77501 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75752 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.389 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1011 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1108960 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -317.389 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -317.389 -318.836 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -317.389 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75088 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.994 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.7523 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.988 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.73306 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.008 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.74238 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.886 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.72902 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.594 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75508 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.626 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74665 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.292 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76652 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.974 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74806 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.236 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75918 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.927 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75673 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.75 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1050 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1211092 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -317.75 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -317.75 -318.836 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -317.75 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76798 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.584 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75612 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.186 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75225 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.146 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.81131 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.118 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79768 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.453 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80032 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.636 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79003 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.572 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79914 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.434 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78734 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.385 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76596 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.327 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76036 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.414 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 976 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1003276 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -317.414 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -317.414 -318.836 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -317.414 protocols.moves.TrialCounter: kic_refine_r1 trials= 373; accepts= 0.4021; energy_drop/trial= -0.02427 protocols.moves.TrialCounter: kic_refine_r2 trials= 376; accepts= 0.3910; energy_drop/trial= 0.00682 protocols.moves.TrialCounter: repack trials= 22; accepts= 1.0000; energy_drop/trial= -0.90640 antibody2.AntibodyUtil: Utility: Checking Kink/Extended CDR H3 Base Angle antibody2.AntibodyUtil: Base Dihedral: 139.09 antibody2.AntibodyUtil: Utility: Finished Checking Kink/Extended CDR H3 Base Angle: 0 protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 10 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 983 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1046760 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -305.438 -305.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -305.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.70253 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.573 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.68238 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.54 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.71219 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.406 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.69413 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -302.675 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.64122 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.977 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.92203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.298 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.70276 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.278 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.69402 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.647 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.03457 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.051 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.93102 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.913 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.21543 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.249 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.22742 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.454 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.24753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.591 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.48911 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.43 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.48371 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.56 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.49328 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.778 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.47797 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.09 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.45477 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.363 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.29098 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.281 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1029 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1199644 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -309.614 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -309.614 -310.363 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -309.614 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.25016 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.961 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.29609 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.849 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.26896 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.808 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.2273 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.527 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.26978 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.729 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.27724 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.751 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.26498 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.974 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.21573 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.046 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.34827 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.148 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.30333 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.542 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.31363 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.871 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.31413 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.767 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.26552 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.099 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.39518 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.895 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62567 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.558 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77208 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.78781 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.677 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.82048 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.137 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.85088 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.065 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.84084 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.763 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1035 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1165664 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -310.763 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -310.763 -311.137 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -310.763 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68638 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.271 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69525 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.643 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.7157 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.822 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63207 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.237 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60053 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.898 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.43271 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.958 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.47926 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.729 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.45522 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.007 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.46581 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.929 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.55864 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.468 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.54465 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.603 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.4735 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.901 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.4896 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.346 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.51265 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.581 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.66584 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.35 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.84744 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.567 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 966 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1001164 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -311.638 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -311.638 -312.468 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -311.638 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.7712 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.947 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.78117 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.825 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.71296 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.566 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.71014 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.572 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69417 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.398 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.66433 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.082 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76071 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.308 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.78798 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.781 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75757 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.133 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.71111 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.327 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.65873 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.058 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.71022 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.901 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67816 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.231 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.70115 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.586 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.55301 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.86 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.53565 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.431 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1073 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1283356 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -311.431 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -311.431 -313.133 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -311.431 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.57922 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.505 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.55915 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.424 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.56394 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.16 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59765 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.333 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.58127 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.63 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.5769 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.55674 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.13 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61893 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.161 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61402 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.356 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62922 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.417 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62226 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.689 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62767 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.775 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62742 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.193 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1009 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1104840 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -311.193 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -311.193 -313.133 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -311.193 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61221 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.086 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59127 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.236 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.57939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.978 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59662 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.03 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.57342 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.224 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59226 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.181 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.58607 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.875 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.55939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.29 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.58481 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.857 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.53989 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.951 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.55919 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.034 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59091 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.583 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58227 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.071 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1072 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1265868 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -310.942 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -310.942 -313.133 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -310.942 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.64123 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.439 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.64085 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.449 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61959 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.796 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.64035 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.488 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62606 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.522 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.6631 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.309 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67063 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.581 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65224 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.747 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65966 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.828 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.68788 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.395 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66041 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.532 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67525 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.065 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.63598 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.169 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1039 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1215788 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -311.171 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -311.171 -313.133 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -311.171 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 2 -313.133 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.74098 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.747 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73789 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.804 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.74474 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59523 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.664 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62054 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.123 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62032 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.621 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61344 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.521 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.6449 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.611 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63331 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.328 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.63867 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.825 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60419 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.787 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59924 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 996 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1075384 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -313.651 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -313.651 -313.825 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -313.651 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.96467 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.347 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.94322 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.963 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.92696 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.913 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.95449 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.04 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.94082 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.327 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.94961 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.032 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75073 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.443 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.74201 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.489 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.70618 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.134 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.71562 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.922 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.69493 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.549 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68764 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.355 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.71786 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.96 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.71569 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.694 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69283 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.898 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.676 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.284 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1015 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1145168 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -309.285 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -309.285 -313.825 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -309.285 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.65937 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.09 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.64503 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.168 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.68976 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.998 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.57622 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.821 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75885 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.191 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.72667 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.884 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73537 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.77 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.77054 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.623 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.833 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.986 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.81106 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.846 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.78753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.268 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78006 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.881 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.84115 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.528 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79518 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.102 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.82076 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.022 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.79028 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.433 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81027 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.319 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1003 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1084072 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -312.319 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -312.319 -313.825 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -312.319 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.79395 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.186 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.94031 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.429 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.02836 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.976 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.92399 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.595 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.95247 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.803 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.97205 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.223 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.94812 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.297 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.97668 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.476 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.00418 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.975 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.97484 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.98068 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.02 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.87576 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.967 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1047 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1214964 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -313.967 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -313.967 -313.967 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -313.967 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.87212 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.695 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.87906 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.396 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.88678 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.678 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.13957 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.453 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.14401 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.385 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.13376 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.241 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.18078 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.741 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.1957 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.55 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1012 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1110040 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -309.572 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -309.572 -313.967 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -309.572 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.18986 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.94 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.18067 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.476 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.17984 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.516 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.19866 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.072 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.18742 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.039 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.14424 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.86 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.1265 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.885 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.14723 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.211 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.12596 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.923 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -309.24 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.67244 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.806 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.6452 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.949 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 993 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1082696 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -312.949 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -312.949 -313.967 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -312.949 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67602 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.078 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.68848 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.196 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.65645 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.016 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66844 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.742 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68765 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.986 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68339 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.823 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.69539 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63074 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.468 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65407 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.884 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.7195 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.982 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 980 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1051240 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -310.996 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -310.996 -313.967 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -310.996 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 3 -313.967 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.8644 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.955 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.86208 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.973 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.86504 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.738 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.8728 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.797 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.8469 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.539 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.87735 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.429 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.86228 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.444 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.88393 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.57 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.83588 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.395 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1007 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1089508 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -313.395 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -313.395 -313.973 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -313.395 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.83728 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.174 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.89458 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.168 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.90678 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.189 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.93928 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.99 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.94798 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.122 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.92425 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.957 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.95949 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.892 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.66126 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.412 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62865 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.209 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.56124 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.303 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.58127 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.054 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1019 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1116832 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -312.054 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -312.054 -313.973 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -312.054 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.56841 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.178 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.57814 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.289 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.54777 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.991 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61332 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.023 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.6296 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.67 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60762 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.631 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68573 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.19 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.71468 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.074 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69469 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.387 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.66854 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.473 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.6934 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.229 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.67593 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.832 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.6908 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.69 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.68535 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.85 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.67219 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.133 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.68266 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.021 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67884 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.737 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1091 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1337540 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -312.737 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -312.737 -314.473 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -312.737 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.64637 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.955 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67637 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.817 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.56163 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.988 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.67647 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.336 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.66163 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.282 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.67077 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.464 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.67687 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.509 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.68486 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.07 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.67903 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.437 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66323 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.547 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.6955 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.46 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69751 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.746 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1068 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1267040 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -311.746 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -311.746 -314.473 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -311.746 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.67706 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.638 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.68601 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.658 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.66563 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.435 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76855 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.714 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77296 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.811 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7381 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.18 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76714 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.456 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.74929 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.421 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.6106 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.356 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59334 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.275 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62054 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.987 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60725 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.865 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1076 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1287696 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -311.865 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -311.865 -314.473 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -311.865 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59372 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.058 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.43526 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.511 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.44309 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.708 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.47752 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.628 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.49996 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.574 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.46729 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.432 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.4786 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.41118 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.362 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.38946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.114 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.3985 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.143 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1091 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1345976 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -312.143 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -312.143 -314.473 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -312.143 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.44707 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.223 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.44866 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.205 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.54297 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.727 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.51501 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.416 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.54687 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.481 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.69905 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.376 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.68607 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.324 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67726 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.88 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.66856 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.97 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67379 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.227 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65577 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.286 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1094 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1348984 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -315.07 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -315.07 -315.481 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -315.07 protocols.moves.TrialCounter: kic_refine_r1 trials= 374; accepts= 0.3770; energy_drop/trial= -0.03429 protocols.moves.TrialCounter: kic_refine_r2 trials= 376; accepts= 0.3670; energy_drop/trial= 0.02189 protocols.moves.TrialCounter: repack trials= 22; accepts= 1.0000; energy_drop/trial= -0.89303 antibody2.AntibodyUtil: Utility: Checking Kink/Extended CDR H3 Base Angle antibody2.AntibodyUtil: Base Dihedral: 142.839 antibody2.AntibodyUtil: Utility: Finished Checking Kink/Extended CDR H3 Base Angle: 0 protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 11 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 983 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1046760 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -305.438 -305.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -305.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.61121 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.132 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.64027 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.486 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.83198 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.718 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.77625 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.363 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.7937 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.922 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.78784 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.987 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.79778 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.231 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.95466 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.39086 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.736 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.40802 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -306.115 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.38153 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.071 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.35574 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -305.157 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.36151 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.818 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.87275 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.293 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.89942 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -308.452 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.89186 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.825 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.88377 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -307.852 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1184 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1726360 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -307.852 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -307.852 -308.452 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -307.852 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.88286 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.916 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.80941 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.244 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81809 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.397 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80527 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.546 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.82498 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.708 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.8086 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.803 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.84334 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.646 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.82091 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.431 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79772 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.554 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.82848 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.913 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.81744 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.679 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.80773 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.166 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79539 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.702 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1196 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1751024 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -312.676 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -312.676 -312.702 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -312.676 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.82325 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.605 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.8174 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.472 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.85157 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.082 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.83094 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.734 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.86862 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.295 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.85162 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.413 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.84565 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.477 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.88092 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.835 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.86194 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.949 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.84143 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.022 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.86939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.165 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.9176 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.541 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.87661 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.276 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.85852 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.83696 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.995 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.85136 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.107 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.84245 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.97 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.81132 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.675 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.82785 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.737 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79411 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -310.702 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67904 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.805 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.66342 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.579 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.66064 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.426 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1217 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1782776 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -311.426 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -311.426 -312.702 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -311.426 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.69447 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.36 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.67051 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.539 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61904 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.756 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.66282 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.124 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63154 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.427 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.666 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.899 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.65532 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.279 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.83787 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.798 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.83813 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.084 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.83257 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.979 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.83555 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.026 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.8644 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.155 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.84444 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.305 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.84967 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.973 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.83382 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.018 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1245 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1896572 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -313.018 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -313.018 -315.084 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -313.018 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.86468 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.791 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.194 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.895 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.476 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.03636 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.152 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.81906 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.339 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.85924 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.42 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.84365 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.339 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.82916 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.85141 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -311.882 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.51744 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.733 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.57125 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.64818 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.745 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.65245 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.95 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78397 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.504 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.81835 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.733 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1001 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1080276 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -314.733 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -314.733 -315.745 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -314.733 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.80218 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.833 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.82021 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.388 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79245 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.178 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74023 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.641 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.78727 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.541 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.44594 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.797 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.42308 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -313.106 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.40103 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.808 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.42094 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -312.361 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63593 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.021 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61755 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.172 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1000 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1102712 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -316.172 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -316.172 -316.172 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -316.172 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63799 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.148 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65725 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.966 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.66972 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.854 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.70151 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.922 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69267 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.908 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.69693 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.071 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69127 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.966 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.70632 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.845 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.79651 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.084 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76803 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.272 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66654 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.217 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.63806 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.265 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76319 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.846 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76864 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.641 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79443 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.893 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1006 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1098596 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -316.893 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -316.893 -317.966 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -316.893 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 2 -317.966 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.69195 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.284 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76664 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.326 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74152 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.136 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75749 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.323 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75385 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.316 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.6262 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.456 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.65661 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.408 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.65509 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.436 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1042 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1207692 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -317.436 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -317.436 -317.966 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -317.436 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.67724 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.834 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65932 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.963 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.046 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.66734 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.679 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.65723 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.356 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.68203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.718 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67356 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.472 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62867 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.798 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.5946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.234 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.73683 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.35 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73214 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.337 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.65056 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.08 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59567 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.074 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59884 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.264 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1031 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1159892 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -316.283 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -316.283 -318.046 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -316.283 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.63159 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.1 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61697 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.692 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74275 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.41 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67903 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.675 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.70381 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.525 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.69249 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.665 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.69825 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.618 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67701 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.09 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68748 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.016 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63218 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.926 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.65597 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.873 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65757 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.821 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1028 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1151700 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -315.823 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -315.823 -318.046 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -315.823 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.6312 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.652 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62823 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.437 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61796 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.625 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62994 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.194 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60428 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.154 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.97 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60247 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.182 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.6255 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.6314 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.515 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65121 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.347 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62596 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.417 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65011 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.619 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76924 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.493 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.82002 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.704 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78909 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.47 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.82969 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.599 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7696 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.871 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 990 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1060984 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -317 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -317 -318.046 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -317 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.78891 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.982 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78945 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.065 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75566 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.07 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73932 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.25 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.73199 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.034 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7452 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.047 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74636 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.425 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.99631 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.089 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.98551 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.861 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.99442 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.936 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.9337 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.735 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.96716 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.533 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.94253 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -314.876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.97301 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.31 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.95512 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.394 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77045 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.593 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1089 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1332248 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -316.68 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -316.68 -318.046 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -316.68 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.73151 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.488 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.70387 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.181 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.69712 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.276 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74429 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.409 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74741 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.71665 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.564 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.67519 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.144 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.65891 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.575 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67904 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.739 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66984 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.517 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68337 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.676 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67901 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.016 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.69479 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.257 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1093 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1342064 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -317.259 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -317.259 -318.488 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -317.259 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66583 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.019 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.67333 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.098 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.665 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.459 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66972 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.621 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.66335 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.069 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.67827 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.17 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.68175 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.708 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72658 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.44 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.70507 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.195 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.6996 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.112 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69151 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.87379 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.497 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.88712 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.623 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1001 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1099036 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -315.624 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -315.624 -318.488 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -315.624 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 3 -318.488 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.73025 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.483 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72383 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.474 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7177 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.44 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72406 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.405 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7577 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.188 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77089 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.384 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75896 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.546 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76053 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.872 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74762 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.803 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75797 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.813 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78491 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.938 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75631 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.189 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73841 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.714 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.7096 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.681 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75739 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.074 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1058 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1239600 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -317.074 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -317.074 -318.488 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -317.074 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74649 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.88 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72324 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.011 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76562 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.262 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74929 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.159 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73859 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.638 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.84969 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.114 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.88091 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.591 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.81363 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.003 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80001 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.922 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1056 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1239964 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -318.18 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -318.18 -318.488 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -318.18 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.81035 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.65 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.8056 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.126 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78151 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.686 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77767 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.838 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.79038 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.231 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.71996 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.46 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.70702 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.265 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.7311 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.173 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7281 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.129 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.74637 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.201 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73243 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.98 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74122 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.155 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75708 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.492 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76479 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.028 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1015 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1119984 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -317.028 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -317.028 -318.488 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -317.028 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77915 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.936 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75278 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.324 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7424 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.69 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.71791 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.984 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7093 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.633 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.66224 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -315.71 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68798 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.606 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.70203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.611 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67158 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.815 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.70057 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.292 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68698 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.57 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1086 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1323176 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -318.57 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -318.57 -318.57 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -318.57 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69614 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.244 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72733 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.052 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.71073 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.986 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.71919 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.604 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68886 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.96 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1076 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1295096 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -316.96 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -316.96 -318.57 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -316.96 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.70779 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -316.816 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77402 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.112 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.79162 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.735 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.78031 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.526 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.78185 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.013 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77534 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.016 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.84477 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.783 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.80909 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.916 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75212 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.532 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.7372 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.992 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.72782 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.417 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75148 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.491 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73896 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.149 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1102 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1349244 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -318.108 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -318.108 -318.992 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -318.108 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74287 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.302 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.72578 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.031 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75079 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -317.926 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.74519 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.095 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75161 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.372 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.8879 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.862 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.87822 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -318.665 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1070 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1279932 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -318.665 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -318.665 -318.992 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -318.665 protocols.moves.TrialCounter: kic_refine_r1 trials= 376; accepts= 0.3644; energy_drop/trial= -0.01110 protocols.moves.TrialCounter: kic_refine_r2 trials= 370; accepts= 0.3757; energy_drop/trial= -0.01266 protocols.moves.TrialCounter: repack trials= 22; accepts= 1.0000; energy_drop/trial= -0.90805 antibody2.AntibodyUtil: Utility: Checking Kink/Extended CDR H3 Base Angle antibody2.AntibodyUtil: Base Dihedral: 146.864 antibody2.AntibodyUtil: Utility: Finished Checking Kink/Extended CDR H3 Base Angle: 0 protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 12 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 983 rotamers at 43 positions. core.pack.pack_rotamers: IG: 1046760 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -305.438 -305.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -305.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.64048 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.852 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.90458 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -303.309 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.91111 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -304.5 protocols.loops.loop_mover.refine.LoopMover_Re