core.init: Mini-Rosetta version 52530 from https://svn.rosettacommons.org/source/trunk/rosetta/rosetta_source core.init: command: condor_exec.exe -seed_offset 30 -database /home/rosie/rosie/rosie.back/data/antibody/rosetta_database -s FR_0001.pdb -scorefile score.sf -multiple_processes_writing_to_one_directory -ex1 -ex2 -antibody::remodel perturb_kic -antibody::snugfit true -antibody::refine refine_kic -antibody::cter_insert false -antibody::flank_residue_min true -antibody::h3_filter true -antibody::h3_filter_tolerance 20 -antibody::h3_no_stem_graft true -nstruct 50 core.init: 'RNG device' seed mode, using '/dev/urandom', seed=2027843061 seed_offset=30 real_seed=2027843091 core.init.random: RandomGenerator:init: Normal mode, seed=2027843091 RG_type=mt19937 protocols.antibody2.AntibodyModelerProtocol: Setting Up defaults.......... protocols.antibody2.AntibodyModelerProtocol: Start Reading and Setting Options ... protocols.antibody2.AntibodyModelerProtocol: Finish Reading and Setting Options !!! core.scoring.etable: Starting energy table calculation core.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well core.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6) core.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6) core.scoring.etable: Finished calculating energy tables. basic.io.database: Database file opened: scoring/score_functions/PairEPotential/pdb_pair_stats_fine basic.io.database: Database file opened: scoring/score_functions/hbonds/standard_params/HBPoly1D.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/standard_params/HBFadeIntervals.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/standard_params/HBEval.csv basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/env_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cbeta_den.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/pair_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cenpack_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/env_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cbeta_den.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/pair_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cenpack_log.txt basic.io.database: Database file opened: scoring/score_functions/MembranePotential/CEN6_mem_env_log.txt basic.io.database: Database file opened: scoring/score_functions/MembranePotential/CEN10_mem_env_log.txt basic.io.database: Database file opened: scoring/score_functions/MembranePotential/memcbeta_den.txt basic.io.database: Database file opened: scoring/score_functions/MembranePotential/mem_pair_log.txt basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_n basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_pp basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/env_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cbeta_den.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/pair_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cenpack_log.txt basic.io.database: Database file opened: scoring/score_functions/rama/Rama_smooth_dyn.dat_ss_6.4 protocols.antibody2: //////////////////////////////////////////////////////////////////////////////// protocols.antibody2: /// protocols.antibody2: /// Rosetta 3 Antibody Modeler /// protocols.antibody2: /// /// protocols.antibody2: /// camelid : 0 protocols.antibody2: /// protocols.antibody2: /// ****** model_h3 : 1 protocols.antibody2: /// h3_perturb_type = 'perturb_kic' protocols.antibody2: /// cter_insert = 0 protocols.antibody2: /// h3_filter = 1 protocols.antibody2: /// protocols.antibody2: /// ****** snugfit : 1 protocols.antibody2: /// LH_repulsive_ramp = 1 protocols.antibody2: /// protocols.antibody2: /// ****** refine_h3 : 1 protocols.antibody2: /// h3_refine_type = 'refine_kic' protocols.antibody2: /// h3_filter = 1 protocols.antibody2: /// h3_filter_tolerance = 20 protocols.antibody2: /// protocols.antibody2: //////////////////////////////////////////////////////////////////////////////// protocols.antibody2: protocols.jd2.PDBJobInputter: Instantiate PDBJobInputter protocols.jd2.PDBJobInputter: PDBJobInputter::fill_jobs protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 2 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 3 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 4 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 5 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 6 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 7 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 8 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 9 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 10 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 11 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 12 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 13 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 14 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 15 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 16 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 17 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 18 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 19 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 20 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 21 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 22 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 23 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 24 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 25 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 26 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 27 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 28 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 29 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 30 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 31 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 32 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 33 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 34 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 35 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 36 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 37 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 38 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 39 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 40 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 41 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 42 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 43 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 44 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 45 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 46 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 47 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 48 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 49 protocols.jd2.PDBJobInputter: pushing FR_0001.pdb nstruct index 50 protocols.evaluation.ChiWellRmsdEvaluatorCreator: Evaluation Creator active ... protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from PDB FR_0001.pdb core.chemical.ResidueTypeSet: Finished initializing fa_standard residue type set. Created 6352 residue types core.conformation.Conformation: Found disulfide between residues 132 206 core.conformation.Conformation: current variant for 132 CYS core.conformation.Conformation: current variant for 206 CYS core.conformation.Conformation: current variant for 132 CYD core.conformation.Conformation: current variant for 206 CYD core.pack.task: Packer task: initialize from command line() protocols.antibody2.AntibodyModelerProtocol: AAAAAAAA cst_weight: 0 protocols.antibody2.AntibodyModelerProtocol: Danger Will Robinson! Native is an impostor! protocols.antibody2.AntibodyModelerProtocol: 'native_pose' is just a copy of the 'input_pose' protocols.antibody2.AntibodyModelerProtocol: since you didn't sepcifiy the native pdb name antibody2.AntibodyInfo: Successfully finished the CDR defintion antibody2.AntibodyInfo: AC Detecting Regular CDR H3 Stem Type antibody2.AntibodyInfo: AC Finished Detecting Regular CDR H3 Stem Type: KINKED antibody2.AntibodyInfo: AC Finished Detecting Regular CDR H3 Stem Type: Kink: 1 Extended: 0 protocols.antibody2.AntibodyModelerProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.antibody2.AntibodyModelerProtocol: /// Rosetta Antibody Info /// protocols.antibody2.AntibodyModelerProtocol: /// /// protocols.antibody2.AntibodyModelerProtocol: /// Antibody Type: Regular Antibody protocols.antibody2.AntibodyModelerProtocol: /// Predict H3 Cterminus Base: KINKED protocols.antibody2.AntibodyModelerProtocol: /// protocols.antibody2.AntibodyModelerProtocol: /// H1 info: protocols.antibody2.AntibodyModelerProtocol: /// length: 10 protocols.antibody2.AntibodyModelerProtocol: /// sequence: GYTFTNYGMN protocols.antibody2.AntibodyModelerProtocol: /// loop_info: LOOP 136 145 141 0 0 protocols.antibody2.AntibodyModelerProtocol: /// H2 info: protocols.antibody2.AntibodyModelerProtocol: /// length: 17 protocols.antibody2.AntibodyModelerProtocol: /// sequence: WINTYTGEPTYADDFKE protocols.antibody2.AntibodyModelerProtocol: /// loop_info: LOOP 160 176 168 0 0 protocols.antibody2.AntibodyModelerProtocol: /// H3 info: protocols.antibody2.AntibodyModelerProtocol: /// length: 14 protocols.antibody2.AntibodyModelerProtocol: /// sequence: DYYGSTYPYYAMDY protocols.antibody2.AntibodyModelerProtocol: /// loop_info: LOOP 209 222 210 0 0 protocols.antibody2.AntibodyModelerProtocol: /// L1 info: protocols.antibody2.AntibodyModelerProtocol: /// length: 12 protocols.antibody2.AntibodyModelerProtocol: /// sequence: RASSSVSSSYLH protocols.antibody2.AntibodyModelerProtocol: /// loop_info: LOOP 24 35 30 0 0 protocols.antibody2.AntibodyModelerProtocol: /// L2 info: protocols.antibody2.AntibodyModelerProtocol: /// length: 7 protocols.antibody2.AntibodyModelerProtocol: /// sequence: STSNLAS protocols.antibody2.AntibodyModelerProtocol: /// loop_info: LOOP 51 57 54 0 0 protocols.antibody2.AntibodyModelerProtocol: /// L3 info: protocols.antibody2.AntibodyModelerProtocol: /// length: 9 protocols.antibody2.AntibodyModelerProtocol: /// sequence: QQYSGYPYT protocols.antibody2.AntibodyModelerProtocol: /// loop_info: LOOP 90 98 94 0 0 protocols.antibody2.AntibodyModelerProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.antibody2.AntibodyModelerProtocol: protocols.antibody2.H3CterInsert: Reading CDR H3 C-ter Fragments protocols.antibody2.H3CterInsert: LOOP 209 222 210 0 0 protocols.antibody2.H3CterInsert: cdr_h3_size=14 protocols.antibody2.H3CterInsert: aa_1name.size()=18 protocols.antibody2.H3CterInsert: ARDYYGSTYPYYAMDYWG protocols.antibody2.H3CterInsert: Finished reading CDR H3 C-ter Fragments protocols.antibody2.ModelCDRH3: Applying CDR H3 modeler antibody2.AntibodyUtil: Utility: Setting up simple one loop fold tree antibody2.AntibodyUtil: Utility: Finished setting up simple one loop fold tree core.chemical.ResidueTypeSet: Finished initializing centroid residue type set. Created 1980 residue types core.conformation.Conformation: Found disulfide between residues 22 96 core.conformation.Conformation: current variant for 22 CYS core.conformation.Conformation: current variant for 96 CYS core.conformation.Conformation: current variant for 22 CYD core.conformation.Conformation: current variant for 96 CYD core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: ALL_LOOPS:LOOP begin end cut skip_rate extended protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: LOOP 209 222 210 0 1 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: SELECTEDLOOPS:LOOP begin end cut skip_rate extended protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: LOOP 209 222 210 0 1 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: protocols.loops.loops_main: Pose fold tree FOLD_TREE EDGE 1 207 -1 EDGE 207 210 -1 EDGE 207 224 1 EDGE 224 211 -1 EDGE 224 232 -1 protocols.loops.loops_main: protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: Setting extended torsions: LOOP 209 222 210 0 1 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: Building Loop: LOOP 209 222 210 0 1 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: Building Loop attempt: 0 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: perturb_one_loop_with_KIC: 209 14 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: remodel init temp: 2 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: remodel final temp: 1 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: kinematic initial perturb with start_res: 209 middle res: 215 end_res: 222 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: loop rmsd before initial kinematic perturbation:0 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: Attempting loop building: 0 ... protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: initial kinematic perturbation complete protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: loop rmsd after initial kinematic perturbation:8.83695 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -66.0682 -66.0682 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.92464 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.93089 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.93187 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.518 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.5284 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.5425 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.43145 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.40797 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.41312 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.3172 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.29407 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.22242 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.71259 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.79147 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.79183 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.78458 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.79797 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.06725 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.06501 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.95156 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.62688 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.67088 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.6769 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.71675 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.71749 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.71498 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.74476 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.82865 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.84582 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.1544 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.10584 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.1205 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.13076 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.14783 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.10206 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.07994 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.06989 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.069 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.96907 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.96876 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.97085 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.97348 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.82976 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.82732 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 10.0101 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.95581 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.95649 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.94537 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 9.94547 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.8649 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.86395 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.88961 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.73425 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.70214 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.78619 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.78923 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.76387 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.75625 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.75538 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.75809 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.47497 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.67192 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.88506 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.65236 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.65445 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.19608 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.62838 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.63099 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.62444 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.58584 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.58813 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.96588 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.95613 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.89202 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.90002 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.84627 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.85034 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.01058 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.7007 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.69599 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.67347 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.67935 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.24736 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.15225 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.18798 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.86471 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.50722 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.47354 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.47511 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.46943 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.48023 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.49673 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.50441 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.56175 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.56523 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.56172 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.69939 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.68056 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.53595 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.46865 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.47617 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.4716 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.38344 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.38183 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.31092 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.34934 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.33524 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.32001 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.31762 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.33245 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.44453 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.451 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.30215 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.30051 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.3684 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.23852 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.23883 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.24194 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.24325 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.27775 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.2819 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.28304 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.23054 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.23558 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.27763 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.28657 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.21382 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.21031 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.17287 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.15482 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.18467 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.17276 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.17238 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.1775 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.15176 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.14546 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.13682 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.12862 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.12814 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.13746 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.21557 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.19282 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.14777 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.14924 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.13578 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.11879 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.96265 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.9675 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.9611 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.71225 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.56574 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.57076 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.59032 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.58838 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.63125 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.6359 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.54628 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.49484 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.5332 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.53273 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.52723 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.5472 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.6169 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.625 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.60232 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.60383 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.60691 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.54404 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.57254 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.568 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.50831 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.6616 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.58471 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.57877 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.58585 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.59162 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.63953 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.72491 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.57992 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.55205 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.21091 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.20323 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.19885 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.14839 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.15003 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.135 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.12023 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.11164 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.11102 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.91387 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.9147 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.91123 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.19953 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.19737 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.19881 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.19216 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.23781 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.24548 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.45249 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.46536 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.41438 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.373 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.27597 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.13663 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.13953 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.17288 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.73041 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.73827 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.74565 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.69448 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.69526 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.69232 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.69004 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.76233 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.80236 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.48187 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.47564 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.37038 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.36837 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.79329 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.91418 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.90973 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.88978 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.90167 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.84612 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.8481 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.81665 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.9568 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.94018 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.95268 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.95688 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.94076 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.9425 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.96445 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.20583 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.24026 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.09943 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.06163 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.05931 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.10496 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.17737 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.0984 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.22657 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.99282 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.00942 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.01397 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.35476 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.36415 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.3546 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.40083 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.96414 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.25776 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.25752 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.19437 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.2821 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.78494 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.79017 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.79073 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.79072 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.78886 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.81329 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.10937 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.11225 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.12622 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.1433 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.13942 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.14272 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.11911 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.35844 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.35798 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.35883 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.35624 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.35531 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.3221 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.48668 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.4931 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.48946 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.48576 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.46316 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.3101 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.36937 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.0158 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.07364 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.17823 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.9346 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.90679 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.90401 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.89951 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.8841 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.8842 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.88654 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.88704 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.84862 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.8911 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.86921 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 4.86218 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.04369 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.93228 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.91776 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.66303 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.65955 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.65852 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.58123 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.61588 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.64043 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.50705 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.91552 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.58105 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.4373 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.43878 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.45176 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.42879 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.5038 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.52651 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.53573 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.54344 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.47563 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.49105 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.55338 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.54263 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.47008 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.45927 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.46526 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.44479 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.40033 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.39304 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.38772 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.47908 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.40337 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.44065 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.50199 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.51022 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.45809 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.47208 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.28463 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.73618 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.73469 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.6761 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.68243 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.18447 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.18279 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.17569 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.38447 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.35839 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.42645 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.41778 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.42611 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.40155 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.41406 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.76963 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.76112 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.192 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.40283 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.36894 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.46735 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.46677 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.47488 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.52034 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.00121 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.00753 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.95193 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.98536 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.9666 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.98499 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.97353 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.98722 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.0121 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.98952 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.98902 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.97241 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.99862 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.01952 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.92968 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.91833 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.8567 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.20971 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.04999 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.01019 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.00926 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.02975 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.03068 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.97278 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.98099 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.84528 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.83544 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.82873 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.12629 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.12542 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.22679 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.23425 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.47274 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.36914 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.39104 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.39139 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.38687 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.48391 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.30033 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.30103 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.33622 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.11859 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.09322 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.07983 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.08674 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.0685 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.06699 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.05776 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.0255 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.0172 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.00733 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.03747 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.03362 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.0297 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.0402 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.02215 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 5.99924 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.21681 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.23422 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.22992 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.2268 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.22712 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.22779 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.23414 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.23746 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.24244 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.24212 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.25718 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.25178 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.25358 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.23303 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.04849 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.04851 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.04379 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.07052 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.06529 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.06406 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.06863 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.06778 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.06174 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.0571 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.05772 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.0602 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.08681 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.0897 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.09 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.08687 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.08016 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.09621 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.10498 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.49892 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.4872 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.46856 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.48265 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.4832 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.49658 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.09168 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.06533 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.07508 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.07081 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.07129 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 6.06583 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.1218 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.1383 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.14835 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.15771 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.17721 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.16509 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.14135 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.14204 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.12619 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.14235 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.11326 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.13639 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.11085 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.12008 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.11334 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.11565 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.11031 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.11052 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.10981 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.11051 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.4166 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.40314 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.74692 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.25622 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.25517 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.24702 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.2415 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.24186 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.24523 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.24445 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.24445 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.24085 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.23352 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.22159 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.25881 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.23428 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.32424 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.32551 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.30037 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.29135 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.28714 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.28949 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.30282 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.46778 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.62578 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.62967 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.22885 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.22653 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.21911 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.54416 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.53237 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.34062 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.33892 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.35677 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.36264 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.36268 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.35484 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.31941 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.31751 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.32007 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.31652 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.31643 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.30245 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.39618 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.39628 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.39909 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 7.4291 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.22218 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.29267 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.26417 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.28633 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.27699 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.28989 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.31224 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.28341 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: new centroid perturb rmsd: 8.2837 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: result of loop closure:0 success, 3 failure 0 protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC: Loopstat: 209 222 209 222 14 time 155.0 0 time 0.0 -85.5871 ext protocols.antibody2.ModelCDRH3: Finished Modeling Centroid CDR H3 loop protocols.antibody2.ModelCDRH3: Finished applying CDR H3 modeler protocols::checkpoint: Deleting checkpoints of LoopMover protocols.antibody2.CDRsMinPackMin: FOLD_TREE EDGE 1 23 -1 EDGE 23 36 1 EDGE 23 30 -1 EDGE 36 31 -1 EDGE 36 50 -1 EDGE 50 58 2 EDGE 50 54 -1 EDGE 58 55 -1 EDGE 58 89 -1 EDGE 89 99 3 EDGE 89 94 -1 EDGE 99 95 -1 EDGE 99 135 -1 EDGE 135 146 4 EDGE 135 141 -1 EDGE 146 142 -1 EDGE 146 159 -1 EDGE 159 177 5 EDGE 159 168 -1 EDGE 177 169 -1 EDGE 177 208 -1 EDGE 208 223 6 EDGE 208 210 -1 EDGE 223 211 -1 EDGE 223 232 -1 protocols.antibody2.CDRsMinPackMin: protocols.loops.loops_main: Added cutpoint variants: RES: 30 protocols.loops.loops_main: Added cutpoint variants: RES: 54 protocols.loops.loops_main: Added cutpoint variants: RES: 94 protocols.loops.loops_main: Added cutpoint variants: RES: 141 protocols.loops.loops_main: Added cutpoint variants: RES: 168 protocols.loops.loops_main: Added cutpoint variants: RES: 210 basic.io.database: Database file opened: scoring/score_functions/disulfides/fa_SS_distance_score core.pack.dunbrack: Dunbrack library took 0.05 seconds to load from binary antibody2.AntibodyUtil: Utility: Setting Up Packer Task antibody2.AntibodyUtil: Utility: Done: Setting Up Packer Task core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 4200 rotamers at 148 positions. core.pack.pack_rotamers: IG: 7076576 bytes protocols.antibody2.RefineBetaBarrel: start finalize_setup function ... antibody2.AntibodyUtil: Utility: Setting Up Packer Task antibody2.AntibodyUtil: Utility: Done: Setting Up Packer Task core.pack.task: Packer task: initialize from command line() protocols.antibody2.RefineBetaBarrel: FOLD_TREE EDGE 1 23 -1 EDGE 23 30 -1 EDGE 23 36 2 EDGE 36 31 -1 EDGE 36 50 -1 EDGE 50 54 -1 EDGE 50 58 3 EDGE 58 55 -1 EDGE 58 87 -1 EDGE 87 89 -1 EDGE 89 94 -1 EDGE 87 206 1 EDGE 89 99 4 EDGE 99 95 -1 EDGE 99 110 -1 EDGE 206 177 -1 EDGE 206 208 -1 EDGE 208 210 -1 EDGE 177 159 6 EDGE 159 146 -1 EDGE 159 168 -1 EDGE 177 169 -1 EDGE 208 223 7 EDGE 223 211 -1 EDGE 223 232 -1 EDGE 146 135 5 EDGE 135 111 -1 EDGE 135 141 -1 EDGE 146 142 -1 protocols.antibody2.RefineBetaBarrel: protocols.loops.loops_main: Added cutpoint variants: RES: 30 protocols.loops.loops_main: Added cutpoint variants: RES: 54 protocols.loops.loops_main: Added cutpoint variants: RES: 94 protocols.loops.loops_main: Added cutpoint variants: RES: 141 protocols.loops.loops_main: Added cutpoint variants: RES: 168 protocols.loops.loops_main: Added cutpoint variants: RES: 210 protocols.antibody2.RefineBetaBarrel: finish finalize_setup function !!! protocols.antibody2.LHRepulsiveRamp: start apply function ... protocols.antibody2.LHRepulsiveRamp: repulsive ramp cycle 1: rep_weight = 0.02 protocols.docking.DockMCMCycle: Setting up defaults for DockMCMCycle: protocols.docking.DockMCMCycle: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockMCMCycle: /// Dockable Jumps: 1 /// protocols.docking.DockMCMCycle: /// Translation: 0.1 /// protocols.docking.DockMCMCycle: /// Rotation: 2 /// protocols.docking.DockMCMCycle: /// Scorefunction: /// protocols.docking.DockMCMCycle: ScoreFunction::show(): weights: (fa_atr 0.338) (fa_rep 0.02) (fa_sol 0.242) (hack_elec 0.026) (fa_pair 0.164) (hbond_sr_bb 0.245) (hbond_lr_bb 0.245) (hbond_bb_sc 0.245) (hbond_sc 0.245) (dslf_ss_dst 0.5) (dslf_cs_ang 2) (dslf_ss_dih 5) (dslf_ca_dih 5) (fa_dun 0.036) (chainbreak 1) (overlap_chainbreak 3.33333) energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 0 EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_protein_protein_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_monomer_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_max_dis: 5.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_min_dis: 1.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_die: 10 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_no_dis_dep_die: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockMCMCycle: HBondOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: include_intra_res_RNA_: false protocols.docking.DockMCMCycle: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockMCMCycle: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockMCMCycle: HBondOptions::show: params_database_tag_: standard_params protocols.docking.DockMCMCycle: HBondOptions::show: use_incorrect_deriv_: false protocols.docking.DockMCMCycle: HBondOptions::show: use_sp2_chi_penalty_: false protocols.docking.DockMCMCycle: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockMCMCycle: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: false protocols.docking.DockMCMCycle: HBondOptions::show: Mbhbond: false protocols.docking.DockMCMCycle: protocols.docking.DockMCMCycle: /// Packing scorefunction: /// protocols.docking.DockMCMCycle: ScoreFunction::show(): weights: (fa_atr 0.8) (fa_rep 0.44) (fa_sol 0.65) (fa_intra_rep 0.004) (pro_close 1) (fa_pair 0.49) (hbond_sr_bb 1.17) (hbond_lr_bb 1.17) (hbond_bb_sc 1.17) (hbond_sc 1.1) (dslf_ss_dst 0.5) (dslf_cs_ang 2) (dslf_ss_dih 5) (dslf_ca_dih 5) (fa_dun 0.56) (p_aa_pp 0.64) (ref 1) energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 0 EnergyMethodOptions::show: method_weights: ref 0.16 1.7 -0.67 -0.81 0.63 -0.17 0.56 0.24 -0.65 -0.1 -0.34 -0.89 0.02 -0.97 -0.98 -0.37 -0.27 0.29 0.91 0.51 EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_protein_protein_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_monomer_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_max_dis: 5.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_min_dis: 1.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_die: 10 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_no_dis_dep_die: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockMCMCycle: HBondOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: include_intra_res_RNA_: false protocols.docking.DockMCMCycle: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockMCMCycle: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockMCMCycle: HBondOptions::show: params_database_tag_: standard_params protocols.docking.DockMCMCycle: HBondOptions::show: use_incorrect_deriv_: false protocols.docking.DockMCMCycle: HBondOptions::show: use_sp2_chi_penalty_: false protocols.docking.DockMCMCycle: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockMCMCycle: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: false protocols.docking.DockMCMCycle: HBondOptions::show: Mbhbond: false protocols.docking.DockMCMCycle: protocols.docking.DockMCMCycle: //////////////////////////////////////////////////////////////////////////////// core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 1 core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 2 core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 3 core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 4 protocols.antibody2.LHRepulsiveRamp: repulsive ramp cycle 2: rep_weight = 0.10284 protocols.docking.DockMCMCycle: Setting up defaults for DockMCMCycle: protocols.docking.DockMCMCycle: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockMCMCycle: /// Dockable Jumps: 1 /// protocols.docking.DockMCMCycle: /// Translation: 0.1 /// protocols.docking.DockMCMCycle: /// Rotation: 2 /// protocols.docking.DockMCMCycle: /// Scorefunction: /// protocols.docking.DockMCMCycle: ScoreFunction::show(): weights: (fa_atr 0.338) (fa_rep 0.10284) (fa_sol 0.242) (hack_elec 0.026) (fa_pair 0.164) (hbond_sr_bb 0.245) (hbond_lr_bb 0.245) (hbond_bb_sc 0.245) (hbond_sc 0.245) (dslf_ss_dst 0.5) (dslf_cs_ang 2) (dslf_ss_dih 5) (dslf_ca_dih 5) (fa_dun 0.036) (chainbreak 1) (overlap_chainbreak 3.33333) energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 0 EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_protein_protein_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_monomer_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_max_dis: 5.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_min_dis: 1.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_die: 10 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_no_dis_dep_die: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockMCMCycle: HBondOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: include_intra_res_RNA_: false protocols.docking.DockMCMCycle: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockMCMCycle: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockMCMCycle: HBondOptions::show: params_database_tag_: standard_params protocols.docking.DockMCMCycle: HBondOptions::show: use_incorrect_deriv_: false protocols.docking.DockMCMCycle: HBondOptions::show: use_sp2_chi_penalty_: false protocols.docking.DockMCMCycle: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockMCMCycle: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: false protocols.docking.DockMCMCycle: HBondOptions::show: Mbhbond: false protocols.docking.DockMCMCycle: protocols.docking.DockMCMCycle: /// Packing scorefunction: /// protocols.docking.DockMCMCycle: ScoreFunction::show(): weights: (fa_atr 0.8) (fa_rep 0.44) (fa_sol 0.65) (fa_intra_rep 0.004) (pro_close 1) (fa_pair 0.49) (hbond_sr_bb 1.17) (hbond_lr_bb 1.17) (hbond_bb_sc 1.17) (hbond_sc 1.1) (dslf_ss_dst 0.5) (dslf_cs_ang 2) (dslf_ss_dih 5) (dslf_ca_dih 5) (fa_dun 0.56) (p_aa_pp 0.64) (ref 1) energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 0 EnergyMethodOptions::show: method_weights: ref 0.16 1.7 -0.67 -0.81 0.63 -0.17 0.56 0.24 -0.65 -0.1 -0.34 -0.89 0.02 -0.97 -0.98 -0.37 -0.27 0.29 0.91 0.51 EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_protein_protein_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_monomer_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_max_dis: 5.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_min_dis: 1.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_die: 10 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_no_dis_dep_die: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockMCMCycle: HBondOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: include_intra_res_RNA_: false protocols.docking.DockMCMCycle: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockMCMCycle: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockMCMCycle: HBondOptions::show: params_database_tag_: standard_params protocols.docking.DockMCMCycle: HBondOptions::show: use_incorrect_deriv_: false protocols.docking.DockMCMCycle: HBondOptions::show: use_sp2_chi_penalty_: false protocols.docking.DockMCMCycle: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockMCMCycle: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: false protocols.docking.DockMCMCycle: HBondOptions::show: Mbhbond: false protocols.docking.DockMCMCycle: protocols.docking.DockMCMCycle: //////////////////////////////////////////////////////////////////////////////// core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 1 core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 2 core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 3 core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 4 protocols.antibody2.LHRepulsiveRamp: repulsive ramp cycle 3: rep_weight = 0.18568 protocols.docking.DockMCMCycle: Setting up defaults for DockMCMCycle: protocols.docking.DockMCMCycle: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockMCMCycle: /// Dockable Jumps: 1 /// protocols.docking.DockMCMCycle: /// Translation: 0.1 /// protocols.docking.DockMCMCycle: /// Rotation: 2 /// protocols.docking.DockMCMCycle: /// Scorefunction: /// protocols.docking.DockMCMCycle: ScoreFunction::show(): weights: (fa_atr 0.338) (fa_rep 0.18568) (fa_sol 0.242) (hack_elec 0.026) (fa_pair 0.164) (hbond_sr_bb 0.245) (hbond_lr_bb 0.245) (hbond_bb_sc 0.245) (hbond_sc 0.245) (dslf_ss_dst 0.5) (dslf_cs_ang 2) (dslf_ss_dih 5) (dslf_ca_dih 5) (fa_dun 0.036) (chainbreak 1) (overlap_chainbreak 3.33333) energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 0 EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_protein_protein_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_monomer_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_max_dis: 5.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_min_dis: 1.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_die: 10 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_no_dis_dep_die: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockMCMCycle: HBondOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: include_intra_res_RNA_: false protocols.docking.DockMCMCycle: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockMCMCycle: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockMCMCycle: HBondOptions::show: params_database_tag_: standard_params protocols.docking.DockMCMCycle: HBondOptions::show: use_incorrect_deriv_: false protocols.docking.DockMCMCycle: HBondOptions::show: use_sp2_chi_penalty_: false protocols.docking.DockMCMCycle: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockMCMCycle: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: false protocols.docking.DockMCMCycle: HBondOptions::show: Mbhbond: false protocols.docking.DockMCMCycle: protocols.docking.DockMCMCycle: /// Packing scorefunction: /// protocols.docking.DockMCMCycle: ScoreFunction::show(): weights: (fa_atr 0.8) (fa_rep 0.44) (fa_sol 0.65) (fa_intra_rep 0.004) (pro_close 1) (fa_pair 0.49) (hbond_sr_bb 1.17) (hbond_lr_bb 1.17) (hbond_bb_sc 1.17) (hbond_sc 1.1) (dslf_ss_dst 0.5) (dslf_cs_ang 2) (dslf_ss_dih 5) (dslf_ca_dih 5) (fa_dun 0.56) (p_aa_pp 0.64) (ref 1) energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 0 EnergyMethodOptions::show: method_weights: ref 0.16 1.7 -0.67 -0.81 0.63 -0.17 0.56 0.24 -0.65 -0.1 -0.34 -0.89 0.02 -0.97 -0.98 -0.37 -0.27 0.29 0.91 0.51 EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_protein_protein_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_monomer_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_max_dis: 5.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_min_dis: 1.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_die: 10 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_no_dis_dep_die: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockMCMCycle: HBondOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: include_intra_res_RNA_: false protocols.docking.DockMCMCycle: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockMCMCycle: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockMCMCycle: HBondOptions::show: params_database_tag_: standard_params protocols.docking.DockMCMCycle: HBondOptions::show: use_incorrect_deriv_: false protocols.docking.DockMCMCycle: HBondOptions::show: use_sp2_chi_penalty_: false protocols.docking.DockMCMCycle: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockMCMCycle: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: false protocols.docking.DockMCMCycle: HBondOptions::show: Mbhbond: false protocols.docking.DockMCMCycle: protocols.docking.DockMCMCycle: //////////////////////////////////////////////////////////////////////////////// core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 1 core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 2 core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 3 core.pack.task: Packer task: initialize from command line() protocols.antibody2.LHRepulsiveRamp: doing rb_mover_min_trial in the DockMCMCycle ... 4 protocols.antibody2.LHRepulsiveRamp: finish apply function !!! protocols.antibody2.RefineBetaBarrel: finish repulsive ramping ! protocols.docking.DockMCMProtocol: in DockMCMProtocol.apply protocols.docking.DockMCMProtocol: Using the DockingTaskFactory. protocols.docking.DockMCMCycle: Setting up defaults for DockMCMCycle: protocols.docking.DockMCMCycle: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockMCMCycle: /// Dockable Jumps: 1 /// protocols.docking.DockMCMCycle: /// Translation: 0.1 /// protocols.docking.DockMCMCycle: /// Rotation: 5 /// protocols.docking.DockMCMCycle: /// Scorefunction: /// protocols.docking.DockMCMCycle: ScoreFunction::show(): weights: (fa_atr 0.338) (fa_rep 0.18568) (fa_sol 0.242) (hack_elec 0.026) (fa_pair 0.164) (hbond_sr_bb 0.245) (hbond_lr_bb 0.245) (hbond_bb_sc 0.245) (hbond_sc 0.245) (dslf_ss_dst 0.5) (dslf_cs_ang 2) (dslf_ss_dih 5) (dslf_ca_dih 5) (fa_dun 0.036) (chainbreak 1) (overlap_chainbreak 3.33333) energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 0 EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_protein_protein_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_monomer_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_max_dis: 5.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_min_dis: 1.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_die: 10 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_no_dis_dep_die: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockMCMCycle: HBondOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: include_intra_res_RNA_: false protocols.docking.DockMCMCycle: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockMCMCycle: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockMCMCycle: HBondOptions::show: params_database_tag_: standard_params protocols.docking.DockMCMCycle: HBondOptions::show: use_incorrect_deriv_: false protocols.docking.DockMCMCycle: HBondOptions::show: use_sp2_chi_penalty_: false protocols.docking.DockMCMCycle: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockMCMCycle: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: false protocols.docking.DockMCMCycle: HBondOptions::show: Mbhbond: false protocols.docking.DockMCMCycle: protocols.docking.DockMCMCycle: /// Packing scorefunction: /// protocols.docking.DockMCMCycle: ScoreFunction::show(): weights: (fa_atr 0.8) (fa_rep 0.44) (fa_sol 0.65) (fa_intra_rep 0.004) (pro_close 1) (fa_pair 0.49) (hbond_sr_bb 1.17) (hbond_lr_bb 1.17) (hbond_bb_sc 1.17) (hbond_sc 1.1) (dslf_ss_dst 0.5) (dslf_cs_ang 2) (dslf_ss_dih 5) (dslf_ca_dih 5) (fa_dun 0.56) (p_aa_pp 0.64) (ref 1) energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 0 EnergyMethodOptions::show: method_weights: ref 0.16 1.7 -0.67 -0.81 0.63 -0.17 0.56 0.24 -0.65 -0.1 -0.34 -0.89 0.02 -0.97 -0.98 -0.37 -0.27 0.29 0.91 0.51 EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_protein_protein_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_monomer_hack_elec: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_max_dis: 5.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_min_dis: 1.5 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_die: 10 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: hackelec_no_dis_dep_die: false protocols.docking.DockMCMCycle: EnergyMethodOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockMCMCycle: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockMCMCycle: HBondOptions::show: exclude_DNA_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: include_intra_res_RNA_: false protocols.docking.DockMCMCycle: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockMCMCycle: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockMCMCycle: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockMCMCycle: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockMCMCycle: HBondOptions::show: params_database_tag_: standard_params protocols.docking.DockMCMCycle: HBondOptions::show: use_incorrect_deriv_: false protocols.docking.DockMCMCycle: HBondOptions::show: use_sp2_chi_penalty_: false protocols.docking.DockMCMCycle: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockMCMCycle: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: false protocols.docking.DockMCMCycle: HBondOptions::show: Mbhbond: false protocols.docking.DockMCMCycle: protocols.docking.DockMCMCycle: //////////////////////////////////////////////////////////////////////////////// core.pack.task: Packer task: initialize from command line() core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1261 rotamers at 44 positions. core.pack.pack_rotamers: IG: 1283612 bytes core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1243 rotamers at 45 positions. core.pack.pack_rotamers: IG: 1220552 bytes core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1328 rotamers at 46 positions. core.pack.pack_rotamers: IG: 1371588 bytes core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1230 rotamers at 44 positions. core.pack.pack_rotamers: IG: 1185984 bytes core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1305 rotamers at 46 positions. core.pack.pack_rotamers: IG: 1365436 bytes core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1305 rotamers at 46 positions. core.pack.pack_rotamers: IG: 1365436 bytes core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() core.pack.task: Packer task: initialize from command line() protocols.antibody2.RefineBetaBarrel: finish L_H Docking ! protocols.antibody2.RefineBetaBarrel: FINISH BETA BARREL REFINEMENT STEP !! antibody2.AntibodyUtil: Utility: Setting up simple fold tree antibody2.AntibodyUtil: Utility: Finished setting up simple fold tree protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 1 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1120 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1222388 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -278.953 -278.953 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -278.953 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.07831 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.959 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.03408 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.466 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.30383 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.511 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.11234 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.541 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.06826 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.428 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.13605 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.943 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.14621 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.655 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.12839 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.123 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.20646 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.734 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.2102 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.333 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.21028 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.377 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.20474 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.439 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.18494 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.548 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.31305 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.381 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.31221 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.269 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.30983 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.243 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.31316 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.225 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 904 rotamers at 47 positions. core.pack.pack_rotamers: IG: 880852 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -276.225 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -276.225 -278.953 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -276.225 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.30984 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.249 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.87347 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.33 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.86911 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.216 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.86955 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.147 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.86805 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.246 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.90345 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.773 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.82968 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.28 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.82922 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.1 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.84209 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.015 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.85868 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.863 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.82761 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.752 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.82003 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.02 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1381 rotamers at 47 positions. core.pack.pack_rotamers: IG: 2010632 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -280.02 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -280.02 -280.28 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -280.02 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.82179 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.514 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.82951 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.882 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.82032 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.913 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.86033 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.289 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.8869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.166 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.88432 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.081 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.68581 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.434 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.62908 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.391 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.64561 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.221 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.63771 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.436 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.63889 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.182 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.64836 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.727 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.66066 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.707 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.65839 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.639 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.64276 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.678 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.65857 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.678 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1024 rotamers at 47 positions. core.pack.pack_rotamers: IG: 990724 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -285.678 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -285.678 -285.727 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -285.678 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.5843 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.642 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.61517 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.049 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.62785 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.321 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.63532 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.369 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.65119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.584 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.51623 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.654 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.54968 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.552 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.53916 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.509 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.53652 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.62 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.52677 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.418 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.55899 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.523 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.5827 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.548 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.49274 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.888 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.50204 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.241 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.48256 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.174 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.50652 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.747 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.5004 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.246 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1020 rotamers at 47 positions. core.pack.pack_rotamers: IG: 984352 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -285.246 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -285.246 -286.747 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -285.246 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.50463 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.847 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.48865 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.704 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.51204 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.711 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.5306 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.786 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.50793 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.246 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.51529 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.087 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.48833 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.593 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.5562 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.53 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.57397 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.674 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.58745 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.742 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.58531 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.789 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.58894 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.725 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.58907 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.707 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.58726 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.968 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.58041 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.182 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1158 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1410200 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -287.182 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -287.182 -287.182 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -287.182 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.58562 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.155 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.60685 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.029 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.60503 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.259 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.59311 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.498 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.61274 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.657 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.54403 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.159 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.55854 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.277 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.46858 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.173 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.44925 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.104 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.45785 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.768 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.48709 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.884 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1191 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1434544 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -285.884 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -285.884 -287.657 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -285.884 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.50236 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.49235 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.908 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.47781 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.083 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.49756 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.248 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.48848 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.296 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.49307 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.379 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.47763 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.083 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.50243 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.931 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.4618 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.929 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.48231 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.951 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.49339 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.129 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.46972 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.032 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.47635 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.772 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.48947 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.699 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.46598 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.463 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.49758 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.058 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.50595 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.102 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.51468 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.031 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.5281 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.946 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1029 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1001704 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -284.946 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -284.946 -287.657 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -284.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 2 -287.657 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.58767 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.534 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.61889 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.809 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.60746 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.325 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.61369 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.923 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.6107 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.124 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.61951 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.712 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.61412 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.74902 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.268 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.76035 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.186 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.83945 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.362 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.83513 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.458 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1204 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1484032 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -285.458 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -285.458 -287.809 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -285.458 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.79871 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.324 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.80774 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.99 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.8038 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.917 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.79809 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.87 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.71067 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.77 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.70296 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.662 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.71638 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.628 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.74986 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.698 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.70028 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.72 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.65987 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.76 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.66286 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.712 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.66349 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.775 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.65989 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.654 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.67964 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.097 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.65387 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.269 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.62739 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.341 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1368 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1836592 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -285.341 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -285.341 -287.809 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -285.341 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.63572 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.498 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.67176 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.093 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.65957 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.157 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.71709 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.723 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.72102 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.977 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.71683 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.964 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.7128 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.118 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.71761 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.2 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.70484 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.911 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.71626 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.043 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.71329 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.106 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.72272 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.831 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.71472 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.478 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.72065 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.763 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.70907 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.093 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1387 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1942456 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -284.093 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -284.093 -287.809 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -284.093 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.72249 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.032 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.72598 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.177 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.6863 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.03 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.61905 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.659 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.65181 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.906 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.65413 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.857 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.65125 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.21 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.67716 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.93 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.68575 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.054 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.67822 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.918 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.67972 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.978 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.67462 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.337 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.59865 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.252 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1379 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1892740 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -287.262 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -287.262 -287.809 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -287.262 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.60055 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.158 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.57809 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.04 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.57882 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.333 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.57834 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.347 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.57675 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.343 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.57694 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.977 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.57734 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.808 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.56077 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.302 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.53901 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.243 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.53811 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.319 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1219 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1526312 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -285.319 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -285.319 -287.809 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -285.319 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.70145 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.644 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.70701 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.719 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.70162 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.904 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.69275 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.944 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.6997 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.799 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.69464 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.461 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.68568 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.768 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.68111 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.331 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.70327 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.055 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.69716 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.116 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.72292 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.942 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.6974 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.803 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1236 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1565468 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -284.818 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -284.818 -287.809 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -284.818 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.72164 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.186 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.6199 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.849 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.62928 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.882 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.63928 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.618 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.64587 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.169 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.55871 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.183 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.55119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.416 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.55077 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.401 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.6614 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.173 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.64813 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.77 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.63771 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.62703 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.683 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.63592 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.002 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.62345 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.875 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1418 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1996236 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -285.875 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -285.875 -288.173 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -285.875 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 3 -288.173 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.65438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.097 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.62833 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.756 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.64336 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.892 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.63838 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.062 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.62554 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.123 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.6357 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.29 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.59386 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.321 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.58151 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.342 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1264 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1649468 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -288.612 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -288.612 -288.612 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -288.612 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.58612 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.67 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.56302 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.78 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.58772 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.405 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.78728 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.553 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.8325 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.396 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.77733 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -291.083 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.77233 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.727 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.78381 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.748 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.77499 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.75 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.78307 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.594 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.77524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.796 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1238 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1608180 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -289.796 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -289.796 -291.083 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -289.796 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.75739 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.814 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.75065 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.215 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.70908 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.179 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.73377 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.696 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.72728 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.73296 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.359 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.72648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.609 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.68269 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.861 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.72829 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.536 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.70927 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.67088 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.481 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.66213 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.701 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.66205 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.554 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.66026 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.516 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1259 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1674956 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -288.745 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -288.745 -291.083 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -288.745 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.65236 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.804 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.66007 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.772 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.65517 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.539 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.665 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.12 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.65863 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.264 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.66662 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.199 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.66058 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.424 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.62336 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.286 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.61343 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.13 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1254 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1662260 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -290.13 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -290.13 -291.083 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -290.13 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.60559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.423 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.60893 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.093 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.64819 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.027 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.63741 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.765 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.61045 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.169 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.5978 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.989 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.61419 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.747 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1260 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1658204 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -288.747 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -288.747 -291.083 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -288.747 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.64326 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.733 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.64008 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.555 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.63698 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.893 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.71967 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -292.079 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.71582 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -292.365 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.70383 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -292.114 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.6964 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -292.274 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.70091 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -292.288 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1276 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1739972 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -292.29 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -292.29 -292.365 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -292.29 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.65702 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -291.983 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.66061 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -291.971 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.66089 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -292.039 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.6863 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -291.816 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.67288 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -291.952 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1271 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1719968 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -291.952 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -291.952 -292.365 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -291.952 protocols.moves.TrialCounter: kic_refine_r1 trials= 364; accepts= 0.3736; energy_drop/trial= 0.00110 protocols.moves.TrialCounter: kic_refine_r2 trials= 366; accepts= 0.3388; energy_drop/trial= -0.02149 protocols.moves.TrialCounter: repack trials= 22; accepts= 1.0000; energy_drop/trial= -1.71295 antibody2.AntibodyUtil: Utility: Checking Kink/Extended CDR H3 Base Angle antibody2.AntibodyUtil: Base Dihedral: 84.9829 antibody2.AntibodyUtil: Utility: Finished Checking Kink/Extended CDR H3 Base Angle: 0 protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 2 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1120 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1222388 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -277.414 -277.414 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -277.414 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.57376 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.773 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.36693 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.805 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.3425 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.045 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.8113 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.9 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.86629 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.42 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.86897 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.556 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.86588 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.427 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.03396 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.261 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.0774 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.551 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.93357 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.254 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.83346 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.651 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.8374 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.691 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.85589 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.435 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.8561 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.465 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.84091 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.382 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.8495 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.775 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1067 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1064052 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -284.775 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -284.775 -286.42 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -284.775 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.863 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.2103 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.973 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.51781 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.365 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.50669 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.144 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.51654 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.933 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.49328 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.89 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.45028 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.493 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.46378 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.124 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.45607 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.454 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.5275 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.86 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.49116 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.184 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1147 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1240316 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -285.185 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -285.185 -286.42 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -285.185 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.4881 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.067 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.49532 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.326 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.48813 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.016 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.35556 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.912 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.35075 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.397 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.36476 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.379 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.37023 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.194 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.36666 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.28 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.44421 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.391 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.4372 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.426 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.44951 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.01 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.47439 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.188 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.47491 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.98 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.39823 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.216 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.39153 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.93 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.38462 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.718 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.40662 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.777 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.39525 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.582 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1135 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1197920 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -286.717 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -286.717 -286.717 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -286.717 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.40231 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.554 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.38492 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.846 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.37713 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.382 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.40963 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.984 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.47484 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.736 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.47134 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.793 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.47127 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.651 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.45263 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.575 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.44127 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.44628 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.192 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.44926 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.715 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.43871 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.794 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.44247 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.111 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.3914 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.732 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1205 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1375684 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -284.735 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -284.735 -286.984 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -284.735 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.40993 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.851 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.4093 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.911 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.3717 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.262 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.36523 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.476 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.35252 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.105 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.38374 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.299 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.42109 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.556 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.43097 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.795 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.45645 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.995 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.44876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.349 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.5414 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.785 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.52447 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.265 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.51698 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.23 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.52016 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.022 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.52936 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.887 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.51508 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.068 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.68125 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.152 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68818 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.181 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.67798 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.304 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68324 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.323 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1146 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1233104 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -284.323 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -284.323 -286.984 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -284.323 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68916 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.457 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68817 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.873 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.69356 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.361 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.64036 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.105 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.57648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.795 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.36553 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.145 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.48577 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.236 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.47753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.046 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.49287 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.637 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.52599 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.675 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.51688 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.668 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.51942 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.52187 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.796 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.49136 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.82 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1105 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1164968 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -284.82 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -284.82 -286.984 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -284.82 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.49611 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.925 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.479 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.354 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.46673 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.971 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.47248 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.079 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.47028 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.704 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.47989 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.466 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.49224 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.885 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.46404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.126 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.10901 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.774 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.09249 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.069 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.0813 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.993 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.05489 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.707 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.07035 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.864 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.04814 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.314 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.86979 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.165 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72092 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.987 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1152 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1228284 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -288.987 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -288.987 -288.987 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -288.987 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 2 -288.987 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.71995 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.724 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72582 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.583 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.725 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.002 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73521 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.351 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.70318 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.338 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.70912 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.191 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.69621 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.039 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.70247 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.143 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.87394 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.448 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.85225 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.659 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.85904 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.637 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.86386 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.882 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.64722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.853 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1099 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1142468 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -287.854 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -287.854 -288.987 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -287.854 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.593 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.66548 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.564 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74684 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.566 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75602 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.782 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.74286 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73684 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.945 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.74936 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.255 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73773 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.162 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1133 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1179084 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -287.162 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -287.162 -288.987 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -287.162 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.73276 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.518 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.88084 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.213 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.87726 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.077 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.88733 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.916 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73892 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.055 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72792 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.737 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.71552 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.758 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75645 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.968 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61993 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.475 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62201 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.87 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1130 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1209628 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -289.87 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -289.87 -290.475 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -289.87 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62647 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.134 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62091 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.181 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62886 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.362 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62214 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.974 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.6256 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.889 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61611 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.11 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61305 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.034 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61476 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.153 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1131 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1211808 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -290.153 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -290.153 -290.475 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -290.153 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61141 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.405 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61409 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.217 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59534 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.86 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.63625 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.868 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.65839 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.796 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69449 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.766 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.69635 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.561 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.69826 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.171 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69882 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.521 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.68516 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.227 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.67911 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.958 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1153 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1285784 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -288.958 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -288.958 -290.475 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -288.958 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.68269 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.515 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.52254 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.258 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.53193 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.003 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.53389 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.858 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.54286 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.86 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.54343 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.363 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.55578 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.386 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.13343 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.194 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.14695 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.627 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.14712 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.484 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.15059 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.599 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.14876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.172 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1080 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1102060 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -286.172 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -286.172 -290.475 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -286.172 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.1139 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.978 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.11348 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.183 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.12399 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.479 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.11666 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.449 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.20306 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.308 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.20589 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.824 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.2025 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.206 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.20478 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.442 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.2012 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.508 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.19872 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.641 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.20111 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.891 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.19513 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.719 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.16633 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.524 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1089 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1128612 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -287.524 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -287.524 -290.475 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -287.524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 3 -290.475 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59831 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.174 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59683 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.171 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60009 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.106 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.5946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.285 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60337 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.789 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59701 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.903 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.52933 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.553 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.51438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.677 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.4898 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.016 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.49101 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.701 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.4932 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.545 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1129 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1243944 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -288.545 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -288.545 -290.475 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -288.545 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.48604 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.666 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.48483 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.432 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.48346 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.304 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.39667 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.51 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.40439 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.371 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.40758 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.405 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.40679 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.503 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.42311 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.626 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.42282 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.332 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.42714 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.527 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.42723 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.365 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.44958 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.187 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1191 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1411004 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -290.187 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -290.187 -290.626 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -290.187 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.44595 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.269 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.44985 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.104 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.44835 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.125 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.47503 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.338 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.50085 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.522 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.49263 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.334 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.4994 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.409 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.48001 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.967 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.42704 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.473 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.41824 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.223 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.42392 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.262 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.42395 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.136 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.44386 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.227 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1203 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1438508 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -289.227 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -289.227 -290.626 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -289.227 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.44063 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.428 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.44517 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.415 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.5307 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.877 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.52323 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.03 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.51777 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.095 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.51447 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.28 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.48797 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.335 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.49161 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.539 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.51088 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.547 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.50133 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.806 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.5203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.362 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.53998 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.271 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1160 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1295872 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -289.271 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -289.271 -290.626 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -289.271 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.53093 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.974 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.52159 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.91 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.52642 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.715 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.5322 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.227 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.53477 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.255 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.53387 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.378 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.53054 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.214 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61151 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.15 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63513 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.846 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1148 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1277372 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -290.846 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -290.846 -290.846 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -290.846 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.6331 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.815 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62954 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.886 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.57864 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.659 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.58371 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.608 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.5814 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.51 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.57922 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.44 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.58311 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.044 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.55915 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.099 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.5359 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.904 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.7109 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.48 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.69322 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.513 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.71149 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.599 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.70222 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.864 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7014 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -291.049 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.70418 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -291.235 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.699 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -291.117 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1161 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1297296 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -291.117 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -291.117 -291.235 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -291.117 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.70269 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.771 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.70157 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.851 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.77184 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.631 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7716 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.526 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75592 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -291.065 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75018 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -291.106 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72274 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.24 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7086 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.297 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.70496 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.45 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.70243 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.29 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.69193 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.338 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68786 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.563 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.67832 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.446 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62896 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -291.008 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1168 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1332796 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -291.008 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -291.008 -291.235 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -291.008 protocols.moves.TrialCounter: kic_refine_r1 trials= 382; accepts= 0.3482; energy_drop/trial= -0.03382 protocols.moves.TrialCounter: kic_refine_r2 trials= 384; accepts= 0.3594; energy_drop/trial= 0.00629 protocols.moves.TrialCounter: repack trials= 22; accepts= 1.0000; energy_drop/trial= -1.97164 antibody2.AntibodyUtil: Utility: Checking Kink/Extended CDR H3 Base Angle antibody2.AntibodyUtil: Base Dihedral: 164.525 antibody2.AntibodyUtil: Utility: Finished Checking Kink/Extended CDR H3 Base Angle: 0 protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 3 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1120 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1222388 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -277.414 -277.414 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -277.414 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.59752 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.441 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.63721 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.317 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.63502 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.897 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.63116 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.877 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.5203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.949 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.54675 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.22 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.69327 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.671 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.68037 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.95 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.6874 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.96 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.83312 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.52 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.8414 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.76 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.33396 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.133 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.3226 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.954 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.25668 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.902 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.25263 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.284 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.19409 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.123 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.19127 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.945 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1188 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1372164 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -279.059 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -279.059 -282.902 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -279.059 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.16646 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.15228 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.882 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.17235 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.926 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.15933 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.075 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.16006 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.239 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.15336 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.532 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.0933 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.064 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.10344 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.301 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.10056 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.213 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.07764 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.383 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.07343 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.371 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.52775 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.439 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.15628 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.185 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.14308 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.973 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.14566 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.548 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1146 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1251320 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -277.548 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -277.548 -282.926 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -277.548 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.14491 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.403 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.21499 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.364 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.10091 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.587 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.98154 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.484 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.15854 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.004 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.17267 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.064 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.12361 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.534 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.12856 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.239 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.12801 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.362 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.33035 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.227 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.34778 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.707 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.19084 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.25 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.19226 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.252 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.20252 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.554 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.17212 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.77 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.15744 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.557 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.18579 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.295 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1190 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1355212 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -279.295 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -279.295 -282.926 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -279.295 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.19383 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.235 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.26689 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.911 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.24801 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.674 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.16696 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.791 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.17285 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.342 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.20637 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.541 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.24462 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.138 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.24383 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.727 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.21468 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.859 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.17707 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.29 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.17732 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.269 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.443 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.642 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.46402 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.691 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.45778 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.137 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.46285 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.216 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.43041 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.293 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1211 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1440992 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -282.192 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -282.293 -283.642 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -282.293 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.43507 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.397 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.44089 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.104 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.43694 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.673 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.43908 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.714 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.44094 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.4429 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.943 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.44709 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.899 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.4431 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.981 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.44271 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.541 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.44666 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.44 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.43683 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.95 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.43947 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.676 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.43702 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.41 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.43721 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.428 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.43939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.478 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.48718 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.25 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1218 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1437100 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -284.25 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -284.25 -284.25 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -284.25 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.49461 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.111 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.49476 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.642 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.5074 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.727 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.46967 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.924 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.50493 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.272 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.51295 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.051 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.47754 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.581 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.4708 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.229 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.49678 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.792 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.50005 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.51682 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.662 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.51733 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.952 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.50629 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.454 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.50897 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.633 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.56587 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.012 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.57632 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.371 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.56879 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.391 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1252 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1467212 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -284.391 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -284.391 -286.373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -284.391 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.57333 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.638 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.51227 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.762 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.51934 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.929 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.52701 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.257 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.53206 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.43 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.53916 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.452 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.54716 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.169 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.53634 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.651 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.51319 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.02 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1205 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1407616 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -282.02 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -282.02 -286.373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -282.02 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 2 -286.373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.50612 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.204 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.50494 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.128 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.50576 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.298 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.51304 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.375 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.52168 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.646 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.58474 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.567 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.58408 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.201 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.58447 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.165 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.58688 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.671 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.56679 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.197 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.4824 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.487 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.48163 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.553 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.48548 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.241 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.48389 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.247 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.49884 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.513 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.49835 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.086 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.49883 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.957 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.49843 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.947 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.50428 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.277 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1216 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1436740 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -283.277 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -283.277 -286.373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -283.277 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.50012 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.295 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.52732 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.987 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.51292 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.09 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.50877 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.843 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.50312 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.794 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.50816 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.035 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.49808 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.502 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.47751 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.575 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.4795 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.739 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.47669 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.779 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.47769 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.561 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.478 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.435 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.53909 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.313 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.53362 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.634 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1214 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1434424 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -281.634 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -281.634 -286.373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -281.634 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.5446 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.82 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.55354 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.604 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.55237 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.108 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.54864 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.046 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.5449 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.275 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.55101 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.177 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.57372 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.183 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.58243 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.937 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.58412 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.692 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.56583 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.937 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.56607 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.817 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.53948 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.561 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.54645 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.107 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.55419 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.292 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.5543 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.473 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.55446 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.312 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1264 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1511804 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -284.312 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -284.312 -286.373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -284.312 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.55611 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.739 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.52402 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.21 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.52468 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.966 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.52687 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.189 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.52653 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.353 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.53041 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.013 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.52459 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.785 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.51884 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.284 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.52706 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.186 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1233 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1488680 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -282.186 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -282.186 -286.373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -282.186 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.71489 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.815 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.63014 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.906 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.63305 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.286 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.6372 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.459 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.70943 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.036 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.70646 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.689 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.70239 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.377 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.70843 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.794 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.71907 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.908 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.72577 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.705 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.72232 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.693 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.7142 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.642 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.71473 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.036 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1300 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1653444 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -285.036 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -285.036 -286.373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -285.036 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.71195 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.027 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.70851 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.70687 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.758 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.67382 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.588 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.67591 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.82 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.66896 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.469 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.7051 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.158 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.70333 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.674 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.69852 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.781 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.68671 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.252 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.69117 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.286 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.68696 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.545 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.68247 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.275 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1288 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1603436 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -283.276 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -283.276 -286.373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -283.276 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.68387 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.126 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.67935 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.442 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.5984 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.938 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.57961 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.685 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.58874 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.61 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.75563 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.533 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.75198 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.728 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.74519 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.591 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.74217 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.425 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.74021 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.828 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.7417 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.742 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.74038 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.548 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.73362 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.64 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.7354 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.936 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1290 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1619332 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -285.936 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -285.936 -286.373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -285.936 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 3 -286.373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.49748 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.793 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.49193 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.626 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.49404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.4929 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.62 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.49147 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.914 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.48827 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.402 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1211 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1415828 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -286.402 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -286.402 -286.402 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -286.402 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.48859 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.245 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.48654 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.116 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.48602 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.22 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.32927 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.473 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.24776 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.742 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.28194 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.174 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.28026 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.642 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.28681 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.964 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.28757 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.158 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.28712 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.375 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.28627 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.443 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.29872 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.591 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.29957 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.517 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.27074 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.968 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.33533 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.7 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.33215 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.321 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.3327 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.442 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1213 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1411432 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -282.442 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -282.442 -286.402 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -282.442 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.32978 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.904 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.32574 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.597 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.41384 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.52 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.41559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.915 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.3807 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.318 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.37131 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.62 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.37364 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.706 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.37538 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.794 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1195 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1375020 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -283.268 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -283.794 -286.402 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -283.794 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.37671 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.813 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.36302 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.987 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.36231 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.361 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.35915 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.427 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.35742 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.272 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.33947 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.81 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.33443 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.01 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.33819 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.205 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.33947 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.113 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.34021 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.915 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.34495 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.921 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.34805 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.887 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1227 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1438776 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -285.887 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -285.887 -286.402 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -285.887 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.349 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.74 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.35164 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.22 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.41765 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.47 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.41799 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.586 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.41468 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.451 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.41452 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.34 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1216 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1408604 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -286.34 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -286.34 -286.586 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -286.34 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.41089 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.41331 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.312 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.40989 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.081 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.40737 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.711 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.40803 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.426 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.40124 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.414 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.40365 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.056 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.40198 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.796 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.28062 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.446 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.28044 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.311 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.27842 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.373 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1202 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1373616 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -286.373 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -286.373 -286.796 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -286.373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.2767 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.798 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.27637 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.704 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.2844 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.28168 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.591 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.27364 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.001 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.27177 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.598 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1198 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1364396 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -285.598 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -285.598 -286.798 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -285.598 protocols.moves.TrialCounter: kic_refine_r1 trials= 381; accepts= 0.3491; energy_drop/trial= -0.02961 protocols.moves.TrialCounter: kic_refine_r2 trials= 386; accepts= 0.3575; energy_drop/trial= 0.02073 protocols.moves.TrialCounter: repack trials= 22; accepts= 0.9091; energy_drop/trial= -1.97052 antibody2.AntibodyUtil: Utility: Checking Kink/Extended CDR H3 Base Angle antibody2.AntibodyUtil: Base Dihedral: 164.869 antibody2.AntibodyUtil: Utility: Finished Checking Kink/Extended CDR H3 Base Angle: 0 protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 4 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1120 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1222388 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -277.414 -277.414 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -277.414 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.45335 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.025 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.45945 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.67 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.47475 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.268 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.4737 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.197 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.53253 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.117 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.55015 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.4 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.43395 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.962 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.47672 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.854 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.55078 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.056 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.63808 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.627 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.80852 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.034 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.04669 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.959 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.10887 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.103 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.01376 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.961 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.01532 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.394 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.00735 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.033 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.99485 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.1 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1079 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1103292 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -283.1 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -283.1 -284.103 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -283.1 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.99684 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.126 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.99192 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.065 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.00259 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.025 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.01576 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.884 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.96079 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.176 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.96605 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.979 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.98796 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.255 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.92966 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.587 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.94845 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.363 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.94696 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.906 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.02631 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.921 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.03117 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.353 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.02604 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.566 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.14822 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.074 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.15638 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.507 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.15953 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.864 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1131 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1175352 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -283.864 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -283.864 -284.921 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -283.864 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.17089 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.739 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.19116 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.1832 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.541 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.17629 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.717 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.10307 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.608 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.13887 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.265 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.15445 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.797 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.14327 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.394 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.91352 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.278 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.94938 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.733 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.93793 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.484 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.02386 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.186 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.9772 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.944 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1196 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1363188 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -283.944 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -283.944 -284.921 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -283.944 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.98335 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.2 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.97393 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.925 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.09305 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.962 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.09658 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.725 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.16531 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.797 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.12134 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.82 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.92873 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.57 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.94066 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.384 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.96858 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.291 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.97023 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.057 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.98298 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.988 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.90842 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.667 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.81043 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.146 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.81186 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.067 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.89295 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.169 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.90454 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.564 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1245 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1492148 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -286.564 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -286.564 -286.57 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -286.564 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.90471 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.511 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.90463 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.459 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.90349 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.529 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.91687 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.596 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.88077 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.737 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.88744 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.432 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.88095 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.116 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.88073 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.993 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.88187 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.795 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1212 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1449108 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -281.795 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -281.795 -286.57 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -281.795 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.87931 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.375 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.87771 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.493 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.88504 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.629 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.87603 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.527 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.8769 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.185 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.87869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.341 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.87648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.623 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.88162 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.875 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.86749 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.774 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.87054 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.87033 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.26 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1102 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1153872 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -281.26 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -281.26 -286.57 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -281.26 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69505 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.903 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75378 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.381 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75602 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.33 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.90241 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.996 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.8024 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.32 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.83338 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.178 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.8284 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.145 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.84674 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.078 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.84279 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.156 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.05064 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.638 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.06305 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.05 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.05912 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.883 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.0515 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.151 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1132 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1235752 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -286.151 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -286.151 -286.57 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -286.151 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 2 -286.57 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.95208 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.457 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.90113 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.018 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.89984 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.291 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.90391 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.106 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.89906 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.962 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.90076 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.553 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.97049 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.21 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.93963 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.936 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.95329 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.851 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.95539 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.97745 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.515 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58557 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.72322 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.333 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.72124 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.561 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73532 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.247 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.73997 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.416 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.70014 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.452 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.99234 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.368 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1091 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1112700 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -287.368 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -287.368 -289.452 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -287.368 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.02796 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.174 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.03419 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.217 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.02539 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.783 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.03995 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.406 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.03937 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.452 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.96075 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.63 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.90432 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.098 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.92104 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.675 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.91839 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.84 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.92863 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.327 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.9331 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.128 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.92227 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.281 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.93514 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.477 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.93353 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.035 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1107 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1156560 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -287.035 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -287.035 -289.452 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -287.035 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.94027 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.378 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.92358 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.525 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.91394 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.288 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.90295 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.717 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.73622 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.908 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.77846 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.219 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.76605 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.022 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.76173 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.633 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.79613 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.779 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.78723 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.793 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7568 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.031 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75799 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.713 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75523 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.614 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1081 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1102176 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -288.614 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -288.614 -290.022 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -288.614 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.71595 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.582 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68729 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.285 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68889 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.494 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69539 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.332 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72478 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.856 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.71262 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.852 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.70576 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.163 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.72025 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.32 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.7147 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.466 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.6795 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.212 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68393 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.76 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1165 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1302900 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -287.76 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -287.76 -290.022 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -287.76 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.68197 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.149 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.69087 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.705 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.68136 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.999 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.68953 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.525 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.71165 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.341 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.6549 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.088 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60773 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.824 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60723 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.734 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61051 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61116 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.679 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60382 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.783 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60622 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.654 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60458 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.671 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1145 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1255536 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -290.671 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -290.671 -290.876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -290.671 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60263 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.748 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59735 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.444 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59893 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.231 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59771 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.286 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.003 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.51962 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.314 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.51432 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.808 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.51123 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.926 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.48495 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.857 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.46552 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.212 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.47155 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.209 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1131 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1218860 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -289.209 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -289.209 -290.876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -289.209 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.47042 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.98 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.47179 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.077 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.44986 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.352 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59733 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.952 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.52101 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.959 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.52525 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.793 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.53105 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.661 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.53373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.369 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.54318 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.311 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.53885 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.391 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.52987 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.554 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.5233 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.793 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.54095 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.857 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.52473 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.743 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.53402 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.608 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.52711 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.904 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1137 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1232648 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -287.904 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -287.904 -290.876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -287.904 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 3 -290.876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61291 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.599 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61099 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.27 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60999 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.347 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60459 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.769 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60603 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.773 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60259 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.859 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60765 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.807 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60766 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.498 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62061 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.935 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1151 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1271248 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -289.935 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -289.935 -290.876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -289.935 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61663 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.591 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.6181 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.425 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61135 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.911 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59321 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.8 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58267 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.543 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.56249 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.812 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.54612 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.506 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.53139 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.347 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.53722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.652 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1162 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1298868 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -289.652 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -289.652 -290.876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -289.652 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.53821 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.745 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58162 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.168 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.57891 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.764 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7232 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.887 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.71125 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.177 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7202 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.097 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1148 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1261840 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -289.097 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -289.097 -290.876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -289.097 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.7176 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.103 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.682 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.575 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.67363 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.147 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62731 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.123 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.55043 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.136 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.54933 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.147 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.55113 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.069 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.55005 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.152 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.55677 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.19 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1155 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1277968 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -290.19 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -290.19 -290.876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -290.19 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63542 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.589 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63908 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.824 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63317 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.857 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.63756 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.858 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.57768 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.861 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.58278 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58104 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.523 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58602 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.316 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.58367 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.942 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59139 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.556 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1126 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1218384 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -289.556 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -289.556 -290.876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -289.556 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60149 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.28 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58929 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59229 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.079 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.144 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.5201 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.51475 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.867 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.53869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.405 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.5017 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.16 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.51322 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.117 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60825 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.916 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61243 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.932 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61549 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.703 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62123 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.639 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.61306 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.158 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.82858 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.493 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.83666 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.557 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1121 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1231352 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -288.557 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -288.557 -290.876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -288.557 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.83318 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.506 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.83765 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.921 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.83356 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.701 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.84177 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.7 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.74737 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.114 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.74863 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.916 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74897 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.934 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74322 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.478 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.73298 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.112 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75713 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.93 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.75984 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.827 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.75338 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.84 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.74741 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.598 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.74839 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.306 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1141 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1211096 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -288.37 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -288.37 -290.876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -288.37 protocols.moves.TrialCounter: kic_refine_r1 trials= 379; accepts= 0.3694; energy_drop/trial= -0.01858 protocols.moves.TrialCounter: kic_refine_r2 trials= 372; accepts= 0.3333; energy_drop/trial= -0.00123 protocols.moves.TrialCounter: repack trials= 22; accepts= 1.0000; energy_drop/trial= -1.96825 antibody2.AntibodyUtil: Utility: Checking Kink/Extended CDR H3 Base Angle antibody2.AntibodyUtil: Base Dihedral: 164.443 antibody2.AntibodyUtil: Utility: Finished Checking Kink/Extended CDR H3 Base Angle: 0 protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1120 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1222388 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -277.414 -277.414 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -277.414 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.09001 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.371 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.2424 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.47 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.2453 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.58 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.26353 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.07 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.27123 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.934 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.25137 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.556 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.25948 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.716 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.26408 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.488 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.12763 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.746 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.12062 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.43 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.11609 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.965 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.1175 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.69 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.12374 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.174 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.18124 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.303 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.17882 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.186 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.20604 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.78 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.25242 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.718 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.21592 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.452 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.21544 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.685 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.19633 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -273.724 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.16147 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.635 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.15837 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.711 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1130 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1181648 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -279.711 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -279.711 -279.711 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -279.711 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.15997 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.469 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.16324 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.112 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.15909 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.209 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.16298 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.751 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.19171 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.159 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.19639 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.067 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.13298 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.849 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.29134 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.517 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.33919 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.859 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.33019 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.12 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.2702 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.055 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.26215 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.449 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.2712 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.197 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.26299 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.667 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1120 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1151224 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -279.682 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -279.682 -281.12 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -279.682 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.18705 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.494 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.26727 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.92 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.26812 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.107 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.2711 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.525 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.27196 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.406 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.31943 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.344 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.23866 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.987 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.51564 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.714 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.51924 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.783 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.53629 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.223 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.53137 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.364 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.53408 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.294 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.7221 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.994 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.7303 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.194 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.72408 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.341 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.72205 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.835 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.7181 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.215 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.7588 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.306 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.75236 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.597 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.74908 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.53 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.75008 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.855 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.74859 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.756 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1175 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1321660 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -280.756 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -280.756 -281.12 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -280.756 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.75462 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.287 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.74908 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.084 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.74224 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.089 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.73999 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.408 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.74104 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.948 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.74289 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.837 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.78083 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.517 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.52166 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.23 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.52042 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.52 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.45461 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.057 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.44593 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.527 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.33562 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.819 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.95367 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.39 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.95823 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.9 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.95203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.166 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.85256 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.342 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.86887 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.095 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.87107 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.062 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.86041 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.586 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1068 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1209492 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -280.075 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -280.586 -283.39 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -280.586 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.97185 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.273 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.98266 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.336 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.7129 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.82 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.43582 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.822 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.4399 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.858 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.44495 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.503 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.44435 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.823 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.4137 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.471 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.43429 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.352 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.4167 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.092 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.41062 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.896 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.3583 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.814 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.35772 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.444 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.3509 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.431 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.35397 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.35134 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.786 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.34216 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.7 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1026 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1131756 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -283.7 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -283.7 -284.444 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -283.7 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.34551 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.78 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.33406 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.686 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.34126 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.74 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.35467 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.027 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.35644 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.501 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.35732 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.223 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.3217 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.319 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.31014 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.891 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.2866 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.405 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.27185 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.631 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.26436 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.675 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.27761 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.924 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.28493 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.859 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.24791 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.449 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.25593 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.365 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.84653 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.649 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.84563 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.894 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.84287 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.858 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.84488 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.931 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1022 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1140600 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -282.931 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -282.931 -284.501 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -282.931 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.91673 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.427 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.83469 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.84295 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.539 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.78424 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.095 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.7738 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.442 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.25496 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.448 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.26626 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.351 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.23938 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.236 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.2695 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.904 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.27945 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.027 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.98831 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.921 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.98355 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.192 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.00462 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.379 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.00845 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.917 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.01964 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.01481 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.997 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.08153 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.428 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1192 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1427804 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -284.428 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -284.428 -284.501 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -284.428 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 2 -284.501 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.35705 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.98 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.35012 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.853 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.34939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.925 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.35575 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.053 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.64682 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.962 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.64542 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.288 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.6482 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.247 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.49143 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.008 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.49342 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.159 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.48392 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.509 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.49997 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.304 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.49858 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.39 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.49975 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.518 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.48938 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.95 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.4897 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.024 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.48805 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.968 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.12246 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.222 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1197 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1428216 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -281.222 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -281.222 -284.501 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -281.222 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.24438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.417 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.3822 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.032 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.38005 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.095 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.38063 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.411 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.38106 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.15 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.37266 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.048 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.37255 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.899 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.35483 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.433 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.36401 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.725 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.36937 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.987 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1200 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1440940 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -285.987 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -285.987 -286.411 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -285.987 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.36998 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.038 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.3693 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.436 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.37543 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.881 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.37203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.034 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.44857 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.59 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.44964 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.746 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.44622 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.211 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.44614 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.027 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.436 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.499 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.43686 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.915 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.4394 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.835 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.43636 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.796 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.30729 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.427 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.31517 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.752 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.31479 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.434 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1032 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1138568 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -284.434 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -284.434 -286.411 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -284.434 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.31215 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.923 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.32168 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.693 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.32321 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.955 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.32691 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.229 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.39534 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.53 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.39596 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.48 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.31445 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.988 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.34011 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.165 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.338 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.143 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.33708 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.235 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.80126 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.682 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.54728 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.222 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.55063 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.267 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.54658 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.54869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.466 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.53911 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.852 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1211 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1401852 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -287.852 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -287.852 -288.466 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -287.852 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.53595 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.659 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.53567 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.664 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.53387 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.79 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.56411 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.471 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.57429 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.922 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.57361 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.281 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.57804 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.554 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.582 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.41 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.60578 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.728 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.60702 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.863 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.46926 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.234 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.43052 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.744 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.44463 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.33797 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.667 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.34327 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.614 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.34423 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.591 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.34214 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.498 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.34378 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.18 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.35383 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.176 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.35212 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.895 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.35656 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.749 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1221 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1434560 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -285.749 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -285.749 -288.466 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -285.749 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.45782 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.658 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.59345 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.747 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.6337 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.788 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.63377 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.601 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.6307 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.184 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.6355 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.855 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.58042 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.271 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.51986 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.116 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.50978 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.11 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.74649 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.718 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.73709 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.89663 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.991 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.83336 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.721 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.83112 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.736 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.80961 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.77454 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.78154 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.388 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.76795 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.945 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.80406 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.016 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.79881 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.114 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.79672 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.26 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1199 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1352032 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -287.26 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -287.26 -288.736 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -287.26 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.77554 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.696 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.7562 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.216 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.78557 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.122 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.77929 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.956 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.83253 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.546 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.83071 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.459 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.83138 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.82477 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.253 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.82212 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.778 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.81014 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.909 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1183 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1313316 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -287.909 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -287.909 -288.736 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -287.909 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 3 -288.736 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.80967 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.462 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.81272 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.546 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.81271 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.691 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.81113 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.783 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.81225 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.782 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.81253 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.798 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.81134 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.713 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.8055 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.592 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.79266 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.261 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.78882 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.159 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.83398 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.246 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1211 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1388380 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -288.246 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -288.246 -288.798 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -288.246 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.8312 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.025 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.8331 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.058 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.83666 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.854 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.83544 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1205 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1370336 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -287.939 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -287.939 -288.798 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -287.939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.83724 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.806 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.83333 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.489 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.76976 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.939 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.76209 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.423 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.7647 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.923 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.50145 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.076 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.50013 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.781 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.49002 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.095 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.49136 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.83 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.48738 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.834 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.47635 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.906 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1186 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1317236 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -286.906 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -286.906 -288.798 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -286.906 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.47093 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.959 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.47922 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.294 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.49432 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.518 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.49233 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.613 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.48825 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.056 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.48652 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.043 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.48875 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.847 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.48915 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.476 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.48735 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.43 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.48839 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.248 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1236 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1449320 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -286.248 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -286.248 -288.798 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -286.248 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.48562 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.94 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.36742 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.492 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.3642 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.678 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.36367 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.58 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.34291 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.271 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.32965 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.431 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.32755 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.171 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.3265 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.346 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.31902 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.39 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.32517 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.246 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.24393 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.831 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.19262 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.427 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.17483 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.107 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.16001 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.971 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.15784 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.119 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1254 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1489720 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -287.119 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -287.119 -288.798 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -287.119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.15813 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.221 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.15859 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.75 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.15885 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.748 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.16289 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.582 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.17272 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.17145 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.016 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.18072 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.767 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.17836 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.125 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.17332 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.336 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.16589 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.737 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1248 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1478728 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -286.737 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -286.737 -288.798 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -286.737 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.14259 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.801 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.1512 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.494 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.15234 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.555 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.15928 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.173 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.15699 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.007 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.15421 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.604 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.15403 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.65 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.15213 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.681 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.1502 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.82 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.17926 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.237 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.18817 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.282 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1247 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1472592 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -286.282 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -286.282 -288.798 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -286.282 protocols.moves.TrialCounter: kic_refine_r1 trials= 381; accepts= 0.4173; energy_drop/trial= -0.02944 protocols.moves.TrialCounter: kic_refine_r2 trials= 375; accepts= 0.4080; energy_drop/trial= 0.00870 protocols.moves.TrialCounter: repack trials= 22; accepts= 0.9545; energy_drop/trial= -1.96598 antibody2.AntibodyUtil: Utility: Checking Kink/Extended CDR H3 Base Angle antibody2.AntibodyUtil: Base Dihedral: 164.114 antibody2.AntibodyUtil: Utility: Finished Checking Kink/Extended CDR H3 Base Angle: 0 protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 6 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1120 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1222388 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -277.414 -277.414 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -277.414 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.42957 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.172 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.47745 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.811 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.56712 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.199 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.527 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.926 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.53623 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.193 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.53651 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.944 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.41088 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.093 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.39417 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.996 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.39407 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.299 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.41638 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.267 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.28329 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.667 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.27647 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.593 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.26961 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.725 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1090 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1142608 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -282.725 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -282.725 -283.667 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -282.725 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.27131 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.259 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.2623 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.003 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.65045 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.033 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.64635 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.272 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.64792 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.679 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.64191 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.017 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.2762 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.854 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.28249 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.746 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1112 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1197704 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -284.746 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -284.746 -284.854 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -284.746 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.28247 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.905 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.36922 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.89 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.37063 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.904 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.35002 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.27 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.68751 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.57 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.6836 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.894 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.67724 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.428 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.696 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.317 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.68799 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.558 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.3856 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.578 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.09382 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.49 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.08899 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.618 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.59011 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.463 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.50546 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -272.439 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.80627 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -274.467 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.79707 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -276.753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.80555 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.017 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.91856 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.452 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1112 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1203832 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -277.452 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -277.452 -284.905 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -277.452 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.47337 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.289 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.47683 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.401 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.33425 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.73 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.33553 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.744 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.28791 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.336 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.18153 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.668 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.20174 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.282 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.20803 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.14 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.20856 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.242 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.1787 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.517 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.18578 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.652 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.147 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.264 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.89861 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.089 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.92902 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.489 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.93991 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.467 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.94497 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.596 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.93759 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.805 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1196 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1412004 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -282.805 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -282.805 -284.905 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -282.805 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.08565 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.421 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.07898 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.518 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.14294 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.547 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.10371 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.321 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.11667 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.137 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.24358 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.211 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.25275 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.006 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.24633 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.928 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.24301 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.909 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.2644 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.278 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.27259 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.049 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.23351 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.477 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.22902 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.857 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.21655 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.983 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.41083 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.561 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.39383 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.958 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.37506 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.67 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.45758 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.246 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1168 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1329072 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -286.251 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -286.251 -288.561 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -286.251 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.46018 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.081 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.45726 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.932 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.45142 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.508 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.44826 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.107 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.41259 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.575 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.41649 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.103 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.4257 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.584 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.3097 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.425 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.3656 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.307 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.36425 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.115 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.36655 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.173 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.36712 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.188 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.38261 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.267 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.3829 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.14 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1160 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1291368 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -287.14 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -287.14 -288.561 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -287.14 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.45038 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.084 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.45127 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.648 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.32403 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.656 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.37022 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.822 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.26965 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.348 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.32246 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.924 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.31878 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.965 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.28081 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.832 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.28388 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.955 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.30755 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.872 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.38487 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.425 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.28545 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.111 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.36528 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.554 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.34418 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.265 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.35113 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.63 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.36402 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.548 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.36712 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.588 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1157 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1294380 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -288.588 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -288.588 -288.63 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -288.588 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 2 -288.63 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.34271 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.69 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.34637 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.23124 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.665 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.20532 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.356 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.21943 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.564 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.22101 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.43 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.19489 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.811 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.595 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.099 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.59784 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.544 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.58966 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.435 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.60314 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.587 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.60761 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.628 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.60255 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.674 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.60104 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.594 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.61665 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.587 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1173 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1360768 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -288.587 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -288.587 -288.69 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -288.587 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.59176 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.361 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.60322 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.211 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.5915 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.379 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.59948 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.448 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.58197 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.306 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.57925 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.996 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.59255 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.387 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.58836 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.444 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.59236 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.23 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.5898 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.488 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.59009 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.464 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.59817 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.476 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.57677 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.095 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.63882 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.117 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.68279 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.002 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.56627 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.455 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.58723 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.319 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1170 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1357520 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -285.319 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -285.319 -288.69 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -285.319 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.64041 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.514 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.6298 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.681 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.61783 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.602 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.62459 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.655 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.62872 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.677 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.63267 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.55 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.64152 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.868 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.71357 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.432 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.73142 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.481 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.69443 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.962 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.71424 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.841 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.70376 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.279 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.71311 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.085 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.70501 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.16 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1172 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1359640 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -286.16 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -286.16 -288.69 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -286.16 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.92659 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.399 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.93052 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.484 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.92494 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.282 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.7038 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.188 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.6931 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.233 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.80927 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.223 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.82371 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.206 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.81068 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.037 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.75305 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.168 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.72568 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.072 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.797 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.794 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.79185 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.815 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.82201 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.83604 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.416 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.82074 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.001 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.77589 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.192 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.86186 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.577 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1182 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1405672 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -286.577 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -286.577 -288.69 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -286.577 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.80383 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.289 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.82798 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.552 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.94319 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.219 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.83598 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.133 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.84533 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.598 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.8313 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.28 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.83378 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.061 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.82505 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.346 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.83452 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.287 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.89634 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.305 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.90498 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.318 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.89683 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.324 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.90378 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.193 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1163 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1329020 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -288.194 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -288.194 -289.133 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -288.194 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.86748 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.118 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.87876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.299 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.87871 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.346 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.84446 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.906 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.85642 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.963 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.8356 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.944 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.70718 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.085 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.71177 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.183 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.6519 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.933 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.64833 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.776 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.63013 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.306 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.63758 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.596 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1178 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1401748 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -287.597 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -287.597 -289.183 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -287.597 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.61858 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.971 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.56199 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.895 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.57991 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.95 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.5732 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.279 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.59036 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.537 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.58477 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.396 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.58914 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.217 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.58817 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.31 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.61029 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.258 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.60227 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.941 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.57689 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.888 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.5856 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.558 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.58897 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.334 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.60862 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.501 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.61333 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.245 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.60084 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.988 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.59654 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.836 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1179 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1403128 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -286.836 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -286.836 -289.183 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -286.836 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 3 -289.183 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.71223 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.191 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.71632 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.723 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.70745 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.734 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.72349 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.665 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.71913 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.503 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.72655 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.46 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1173 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1383192 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -288.46 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -288.46 -289.191 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -288.46 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.68689 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.694 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.68924 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.817 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.69077 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.645 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.6738 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.858 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.63013 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.991 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.62117 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.423 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.60811 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.541 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.63537 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.054 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.66487 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.911 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.67454 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.985 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1156 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1346176 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -287.985 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -287.985 -289.191 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -287.985 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.67015 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.734 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.67527 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.686 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.64373 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.786 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.49076 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.769 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.48615 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.715 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.48248 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.99 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.47089 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.852 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.48372 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.908 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.48105 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.16 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1110 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1267008 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -286.16 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -286.16 -289.191 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -286.16 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.48983 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.774 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.4914 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.92 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.47291 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.326 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.48136 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.538 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.47362 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.375 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.48348 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.631 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.44156 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.681 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.61503 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.751 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.66786 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.427 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.77618 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.392 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.7758 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.994 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1084 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1173064 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -285.994 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -285.994 -289.191 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -285.994 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.78573 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.6 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.79285 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.308 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.79077 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.446 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.77723 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.808 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.73753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.624 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.74615 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.355 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.74244 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.026 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.74992 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.27 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.74776 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.222 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.66803 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.178 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.81685 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.416 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.94942 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.491 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.94633 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.166 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.94728 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.965 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.77397 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.488 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.66284 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.392 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.69645 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.737 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.71744 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.472 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.69162 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.426 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.70587 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.628 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.6972 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.247 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.71897 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.017 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 100/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1083 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1171568 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -287.017 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -287.017 -289.191 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -287.017 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.71094 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.77 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.72655 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.929 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.72362 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.017 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.72892 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.107 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.72732 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.249 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.73131 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.284 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1224 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1576044 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -286.284 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -286.284 -289.191 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -286.284 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.65869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.144 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.6685 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.726 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.65522 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.854 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.74015 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.674 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.74596 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.776 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.75662 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.646 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.75497 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.762 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.76998 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.855 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1219 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1552464 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -288.855 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -288.855 -289.191 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -288.855 protocols.moves.TrialCounter: kic_refine_r1 trials= 388; accepts= 0.3479; energy_drop/trial= -0.00730 protocols.moves.TrialCounter: kic_refine_r2 trials= 399; accepts= 0.3684; energy_drop/trial= -0.01557 protocols.moves.TrialCounter: repack trials= 22; accepts= 1.0000; energy_drop/trial= -1.96554 antibody2.AntibodyUtil: Utility: Checking Kink/Extended CDR H3 Base Angle antibody2.AntibodyUtil: Base Dihedral: -157.625 antibody2.AntibodyUtil: Utility: Finished Checking Kink/Extended CDR H3 Base Angle: 0 protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 7 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1120 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1222388 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -277.414 -277.414 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -277.414 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.47331 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.387 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.46819 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.155 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.32261 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.218 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.43372 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.352 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.5518 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.444 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.64223 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.048 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.68023 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.222 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 3.66958 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.565 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.47052 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.001 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 3.35182 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.449 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.65514 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.33 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.63748 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.47 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.74717 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.126 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1195 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1403748 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -281.126 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -281.126 -282.048 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -281.126 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.75835 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.083 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.97831 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.967 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.97786 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.78 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.97509 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.748 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.99029 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.00028 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.742 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.55431 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.512 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.31517 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.543 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.28689 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.044 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.29685 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.959 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.30659 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.51 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.32339 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.969 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.2848 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.707 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.28787 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.078 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.2734 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.531 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.2747 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.327 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.26693 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.552 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1186 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1377208 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -283.552 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -283.552 -284.044 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -283.552 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.26375 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.299 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.2415 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.902 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.22596 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.389 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.15372 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.622 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.15199 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.704 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.19641 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.097 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.59986 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.596 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.61264 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.078 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.60916 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.477 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.66563 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.945 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.68869 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.408 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.67832 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.543 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.67225 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.681 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.6849 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.292 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.67896 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.301 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.69779 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.328 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1219 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1453732 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -285.328 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -285.328 -285.945 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -285.328 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.69413 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.994 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.70861 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.846 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.69503 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.133 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.70907 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.91 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.88793 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.91986 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.937 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.91039 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.334 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.82574 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.96 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.06468 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.408 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.02777 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.804 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.8507 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.135 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.83784 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.564 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.83836 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.283 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.84055 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.619 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.83365 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.81022 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.77781 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.787 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1181 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1333584 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -283.234 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -283.234 -286.619 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -283.234 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.77872 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.083 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.78163 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.665 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.7736 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.972 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.76584 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.483 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.6643 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.163 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.66491 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.839 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.66106 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.342 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.66256 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.2 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.69321 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.219 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.6979 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.742 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.70702 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.406 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.68573 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.572 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.69566 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.007 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1178 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1322328 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -284.007 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -284.007 -286.619 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -284.007 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.70255 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.729 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.7477 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.361 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.70562 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.618 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.77556 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.905 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.76718 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.292 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.86652 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.704 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.86384 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.904 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.85579 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.703 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.86655 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.778 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.914 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.754 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.90132 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.621 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.84234 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.659 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.50952 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.235 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.48712 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.544 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.48438 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.576 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.49582 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.679 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 120/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1093 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1038532 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -283.679 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -283.679 -286.619 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -283.679 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.47796 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.368 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.50271 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.383 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.48683 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.521 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.8616 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.67 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.88232 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.258 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.86204 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.063 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.28988 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.272 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.50055 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.369 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.48165 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.585 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.48128 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.336 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.45735 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.797 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 140/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1167 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1303776 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -284.797 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -284.797 -286.619 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -284.797 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 2 -286.619 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.83679 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.43 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.75094 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.25 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.74112 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.401 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.74275 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.458 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.73261 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.487 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.73553 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.506 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.73219 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.752 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.92261 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.455 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.90212 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.664 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.96339 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.656 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.97432 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.849 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.9475 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.664 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.96303 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.108 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.97288 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.132 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.96866 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.787 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1221 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1483028 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -287.829 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -287.829 -287.849 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -287.829 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.97104 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.041 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.97069 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.59 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.9707 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.529 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.93187 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.953 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.93753 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.885 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.92042 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.131 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.91638 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.218 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.96256 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.97 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.94496 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.977 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.95402 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.088 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.96344 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.041 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.95788 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.016 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1180 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1340472 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -288.017 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -288.017 -288.218 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -288.017 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.82296 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.335 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.83853 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.015 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.83349 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.228 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.83927 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.629 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.8404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.331 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.84083 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.301 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.82208 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.71 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.7817 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.572 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.82644 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.287 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.83664 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.377 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.83389 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.437 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.83538 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.328 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.84991 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.174 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.85701 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.284 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.86899 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.173 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1199 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1385108 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -288.38 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -288.38 -288.629 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -288.38 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.85317 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.143 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.85455 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.549 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.85554 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.666 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.86011 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.872 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.87057 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.857 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.87787 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.938 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.88146 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.155 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.88374 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.911 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.93299 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -291.121 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1172 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1345632 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -291.121 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -291.121 -291.121 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -291.121 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.93574 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -291.199 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.94246 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -291.189 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.95155 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.617 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.94835 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.843 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.95232 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.862 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.94632 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.839 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.95803 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.95774 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.529 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.95086 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.264 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.95377 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.553 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.9392 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.498 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.90946 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.702 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1171 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1344752 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -290.702 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -290.702 -291.199 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -290.702 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.93193 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.807 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.93076 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.91 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.9287 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.163 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.94694 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.314 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.94353 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.505 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.95638 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.766 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.94895 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.892 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.948 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.717 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.93842 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.335 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.92497 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.347 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.94379 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.897 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.94043 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.145 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.94053 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.83 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.94566 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.823 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.94647 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.272 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.93464 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.492 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.94176 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.655 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1148 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1232300 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -287.655 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -287.655 -291.199 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -287.655 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.9501 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.245 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.86644 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.855 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.8639 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.477 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.8598 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.643 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.84186 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.691 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.84455 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.474 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.83462 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.312 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.94441 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.903 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.95379 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.856 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.95419 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.813 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.95482 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.78 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.95494 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.758 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1169 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1319424 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -289.758 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -289.758 -291.199 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -289.758 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 3 -291.199 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.93411 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -291.078 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.93699 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -291.25 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.93595 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -291.238 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.93477 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -291.106 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 20/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1173 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1345324 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -291.106 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -291.106 -291.25 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -291.106 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.93762 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -291.116 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.96791 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.847 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.94751 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.849 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.96616 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.828 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.96333 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.764 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.95961 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.277 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.96513 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.423 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.96891 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.522 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.95077 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.524 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1171 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1343916 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -290.524 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -290.524 -291.25 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -290.524 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.96234 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.834 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.94668 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.457 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.96876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.296 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.96185 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.015 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.01618 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.372 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.02011 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.4 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.02813 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.557 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.01675 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.826 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.02155 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.462 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1170 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1347044 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -290.462 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -290.462 -291.25 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -290.462 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.02185 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.606 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.01833 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.366 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.0197 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.585 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.01849 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.651 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.02618 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.709 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.02333 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.973 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.97184 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -291.247 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.9938 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.591 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 80/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1174 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1355784 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -290.591 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -290.591 -291.25 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -290.591 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.98624 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.851 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.98715 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -291.057 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.98713 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.628 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.98716 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.658 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.98687 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.861 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.98271 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.936 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.98361 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -291.008 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.98558 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -291.038 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.03267 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.064 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.02537 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.169 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.02612 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.993 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.02168 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.928 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.02122 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.781 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.01629 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.975 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1173 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1349744 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -289.975 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -289.975 -291.25 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -289.975 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.00738 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.983 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.01028 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.985 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.01213 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.119 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.99776 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.842 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.99974 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.036 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.96135 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -290.267 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 4.96738 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.688 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.96937 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.531 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 4.97549 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.495 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.21703 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.269 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.22055 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.293 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.23528 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -288.263 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.08375 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.326 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1137 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1231276 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -289.326 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -289.326 -291.25 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -289.326 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.06873 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.419 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.07654 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.478 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.07394 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.134 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.07247 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.437 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.11859 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.1 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.14611 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.649 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.15187 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.719 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 5.15403 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.71 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 3/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 5.15172 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -289.611 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1136 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1232428 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -289.611 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -289.611 -291.25 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -289.611 protocols.moves.TrialCounter: kic_refine_r1 trials= 381; accepts= 0.3491; energy_drop/trial= -0.00704 protocols.moves.TrialCounter: kic_refine_r2 trials= 388; accepts= 0.3299; energy_drop/trial= -0.01432 protocols.moves.TrialCounter: repack trials= 22; accepts= 1.0000; energy_drop/trial= -1.99692 antibody2.AntibodyUtil: Utility: Checking Kink/Extended CDR H3 Base Angle antibody2.AntibodyUtil: Base Dihedral: 135.142 antibody2.AntibodyUtil: Utility: Finished Checking Kink/Extended CDR H3 Base Angle: 0 protocols.antibody2.RefineOneCDRLoop: Trying Refinement ................. 8 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine init temp: 1.5 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refine final temp: 0.5 core.pack.task: Packer task: initialize from command line() protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: Not designing core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1120 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1222388 bytes core.pack.task: Packer task: initialize from command line() protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -277.414 -277.414 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 1 -277.414 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.09605 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.775 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.995 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.477 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.90581 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.861 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.11159 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.069 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.10068 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.933 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.12161 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.048 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.11463 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.914 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.14378 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.165 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.19774 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.537 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.18835 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.264 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.19697 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -279.942 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.19092 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.179 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.54772 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.542 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60188 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.734 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.58898 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.155 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.59998 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.175 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60149 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.145 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.53269 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.49094 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.162 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.50617 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.785 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1152 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1248364 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -284.785 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -284.785 -285.422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -284.785 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.60432 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.875 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60837 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.699 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.59374 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.60484 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.811 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.62332 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.075 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.61096 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.192 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.62525 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.722 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.44275 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.386 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.39858 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.91 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.41046 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.651 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 40/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1135 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1200968 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -285.651 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -285.651 -286.192 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -285.651 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.41656 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.844 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.40316 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.78 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.53689 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.089 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.52652 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.51749 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.26 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.45364 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.402 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.40991 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.983 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.02931 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.39 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.06907 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.883 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 60/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.08724 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.201 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1146 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1246792 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -286.206 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -286.206 -287.203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -286.206 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.06559 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.31 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.06075 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.541 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.29755 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.867 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.17388 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.339 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.71471 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.167 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.72629 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.218 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.7302 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.976 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.76787 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.606 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.77745 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.296 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.8346 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.529 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.84195 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.513 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.84956 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.613 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.93417 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.824 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1053 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1028356 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -285.824 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -285.824 -287.203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -285.824 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.85118 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.981 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.92845 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.36 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.95276 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.009 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.88617 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.94 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.88538 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.332 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.0311 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.447 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.985 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.783 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.76879 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.037 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.77582 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.757 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.7841 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.661 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.82729 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.819 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.72538 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.174 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1117 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1147728 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -285.303 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -285.303 -287.203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -285.303 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.7258 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.668 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.72899 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.607 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.73008 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.434 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.27778 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.557 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.28188 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.592 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.28699 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.644 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.29899 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.344 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.19482 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.161 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.2562 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.985 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.1915 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.346 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 115/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 116/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.17924 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.176 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 117/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.1761 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 118/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.02164 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.576 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 119/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.02786 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.11 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 120/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.029 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -275.399 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1129 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1256296 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -275.399 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -275.399 -287.203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -275.399 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 121/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.9765 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -277.253 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 122/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.90169 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -278.483 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.90597 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.827 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 123/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.92766 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.074 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.91657 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.12 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 124/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.94493 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.461 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 125/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 126/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.90324 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.961 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.84228 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.355 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 127/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.81516 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.769 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 128/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.01227 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.085 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 129/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.12058 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.077 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 130/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 131/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.8273 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.876 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 132/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.7452 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.987 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.73891 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 133/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.74574 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.214 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 134/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.69815 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.32 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 135/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.84714 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.384 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 136/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 137/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 138/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 139/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.85179 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.253 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 1/3 140/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.80772 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.543 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1103 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1186012 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -283.543 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -283.543 -287.203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -283.543 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: cycle: 2 -287.203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 1/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 2/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 3/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.53511 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.132 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 4/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.5291 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.845 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.53169 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.75 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 5/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.52593 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.699 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.02842 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.235 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 6/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 7/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 8/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 9/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 10/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.03175 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.589 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 11/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 12/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 13/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.0164 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.03 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.04322 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.724 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 14/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.02042 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.382 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.02365 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.706 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 15/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.95649 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.697 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 16/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.92769 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.695 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 17/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.93411 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.767 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.93763 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.923 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 18/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 19/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.94202 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.865 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 20/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.95206 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.44 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1072 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1088376 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -283.44 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -283.44 -287.203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -283.44 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 21/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 22/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 23/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.99684 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.278 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 24/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 25/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.9991 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.321 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 26/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 27/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 28/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 29/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.98864 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.845 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 30/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.98138 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.261 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.84497 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.016 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 31/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 32/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 33/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 34/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 35/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 36/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.85051 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.026 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 37/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.83198 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.079 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 38/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.8359 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -283.182 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 39/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 40/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.98948 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.195 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1065 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1059960 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -282.197 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -282.197 -287.203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -282.197 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 41/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 42/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.81253 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.283 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 43/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.84391 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -280.933 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 44/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.8381 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.423 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 45/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 46/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.8867 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.763 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 47/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 48/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.83721 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -281.516 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 49/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.91024 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.368 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 50/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.89015 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.192 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.90404 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.324 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 51/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 52/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.90084 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.758 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 53/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.07081 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.551 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 54/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.06605 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.625 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 55/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 56/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 57/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.0756 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.195 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 58/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.14076 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -282.647 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.13575 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.844 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 59/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.1434 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.952 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 60/140 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1072 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1074416 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -284.952 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -284.952 -287.203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -284.952 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 61/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 62/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.14667 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.925 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 63/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 64/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.11109 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.628 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 65/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.12309 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.247 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 66/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 67/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.10893 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.749 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 68/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.111 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.708 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 69/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.72649 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.857 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 70/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.83352 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.947 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 71/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 72/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 73/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 74/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 75/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 76/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.83358 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.755 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 77/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.83706 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.991 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 78/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 79/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.83554 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.729 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 80/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.83382 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.839 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.86049 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.569 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1123 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1166012 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -286.574 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -286.574 -287.203 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -286.574 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 81/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.89659 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.079 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 82/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.3177 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.202 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 83/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 84/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 85/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.48057 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.608 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 86/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.46782 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.09 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 87/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.45542 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.225 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 88/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.45108 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.03 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 89/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 90/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 91/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.45021 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.938 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 92/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 93/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.45236 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.2 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 94/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 95/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 96/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 97/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.4483 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -287.19 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 98/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.44192 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.969 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 99/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.4426 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.949 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 100/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.38015 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.2 core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 1134 rotamers at 47 positions. core.pack.pack_rotamers: IG: 1199232 bytes protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after design: -285.414 protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -285.414 -287.225 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after repack: -285.414 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 101/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.32684 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.039 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 102/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.31865 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.96 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 2.32725 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.43 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 103/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.3161 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.527 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 104/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 105/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 106/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 2.32457 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -284.134 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 107/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.82355 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.318 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 108/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.84422 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.97 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 109/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.88798 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.511 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.91348 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.396 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 110/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.90513 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.418 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 111/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 112/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.90358 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -285.256 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.89477 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.793 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 113/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: refinement cycle (outer/inner): 2/3 114/140 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 1 move on loop 1: 1.89887 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: -286.7 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: RMS to native after accepted kinematic round 2 move on loop 1: 1.89894 protocols.loops.loop_mover.refine.LoopMover_Refine_KIC: energy after accepted move: