core.init: Rosetta version 8070f8c8d052ad735f4fe1fc0e9f5af080f1d6f6 2013-08-23 22:23:39 -0400 from https://github.com/RosettaCommons/main.git
core.init: command: /home/rosie/rosie.32/rosie.back/data/meta/bin/fixbb.static.linuxgccrelease -database /home/rosie/rosie.32/rosie.back/data/meta/database -s protein.pdb -resfile repack.resfile -scorefile pack_score.sf -out:path:pdb .
core.init: 'RNG device' seed mode, using '/dev/urandom', seed=-632762668 seed_offset=0 real_seed=-632762668
core.init.random: RandomGenerator:init: Normal mode, seed=-632762668 RG_type=mt19937
core.scoring.ScoreFunctionFactory: SCOREFUNCTION: talaris2013
core.scoring.etable: Starting energy table calculation
core.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well
core.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6)
core.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6)
core.scoring.etable: Finished calculating energy tables.
basic.io.database: Database file opened: scoring/score_functions/hbonds/sp2_elec_params/HBPoly1D.csv
basic.io.database: Database file opened: scoring/score_functions/hbonds/sp2_elec_params/HBFadeIntervals.csv
basic.io.database: Database file opened: scoring/score_functions/hbonds/sp2_elec_params/HBEval.csv
basic.io.database: Database file opened: scoring/score_functions/rama/Rama_smooth_dyn.dat_ss_6.4
basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA
basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_n
basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_pp
protocols.jd2.PDBJobInputter: Instantiate PDBJobInputter
protocols.jd2.PDBJobInputter: PDBJobInputter::fill_jobs
protocols.jd2.PDBJobInputter: pushed protein.pdb nstruct index 1
protocols.evaluation.ChiWellRmsdEvaluatorCreator: Evaluation Creator active ... 
protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job
protocols.jd2.PDBJobInputter: filling pose from PDB protein.pdb
core.chemical.ResidueTypeSet: Finished initializing fa_standard residue type set.  Created 9172 residue types
core.conformation.Conformation: [ WARNING ] missing heavyatom:  OXT on residue PRO_p:CtermProteinFull 139
core.conformation.Conformation: [ WARNING ] missing heavyatom:  OXT on residue PRO_p:CtermProteinFull 278
core.pack.task: Packer task: initialize from command line() 
core.pack.task: Packer task: initialize from command line() 
core.pack.dunbrack: Dunbrack 2010 library took 0.37 seconds to load from binary
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 10710 rotamers at 278 positions.
core.pack.pack_rotamers: IG: 26260636 bytes
protocols.jd2.JobDistributor: protein_0001 reported success in 26 seconds
protocols.jd2.JobDistributor: no more batches to process... 
protocols.jd2.JobDistributor: 1 jobs considered, 1 jobs attempted in 27 seconds